-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0043195635
-
Genetic and physical localization of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS-LRR genes
-
Ashfield T, Bocian A, Held D, Henk AD, Marek LF, Danesh D, Peñuela S, Meksem K, Lightfoot DA, Young ND, et al (2003) Genetic and physical localization of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS-LRR genes. Mol Plant Microbe Interact 16: 817-826
-
(2003)
Mol Plant Microbe Interact
, vol.16
, pp. 817-826
-
-
Ashfield, T.1
Bocian, A.2
Held, D.3
Henk, A.D.4
Marek, L.F.5
Danesh, D.6
Peñuela, S.7
Meksem, K.8
Lightfoot, D.A.9
Young, N.D.10
-
3
-
-
84860549964
-
Evolution of a complex disease resistance gene cluster in diploid Pha-seolus and tetraploid Glycine
-
Ashfield T, Egan AN, Pfeil BE, Chen NW, Podicheti R, Ratnaparkhe MB, Ameline-Torregrosa C, Denny R, Cannon S, Doyle JJ, et al (2012) Evolution of a complex disease resistance gene cluster in diploid Pha-seolus and tetraploid Glycine. Plant Physiol 159: 336-354
-
(2012)
Plant Physiol
, vol.159
, pp. 336-354
-
-
Ashfield, T.1
Egan, A.N.2
Pfeil, B.E.3
Chen, N.W.4
Podicheti, R.5
Ratnaparkhe, M.B.6
Ameline-Torregrosa, C.7
Denny, R.8
Cannon, S.9
Doyle, J.J.10
-
4
-
-
1042267608
-
Convergent evolution of disease resistance gene specificity in two flowering plant families
-
Ashfield T, Ong LE, Nobuta K, Schneider CM, Innes RW (2004) Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell 16: 309-318
-
(2004)
Plant Cell
, vol.16
, pp. 309-318
-
-
Ashfield, T.1
Ong, L.E.2
Nobuta, K.3
Schneider, C.M.4
Innes, R.W.5
-
5
-
-
61849179574
-
Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance
-
Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu J, Matsumoto T, Ono K, Yano M (2008) Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics 180: 2267-2276
-
(2008)
Genetics
, vol.180
, pp. 2267-2276
-
-
Ashikawa, I.1
Hayashi, N.2
Yamane, H.3
Kanamori, H.4
Wu, J.5
Matsumoto, T.6
Ono, K.7
Yano, M.8
-
6
-
-
75849136053
-
Al-lelic genome structural variations in maize detected by array comparative genome hybridization
-
Beló A, Beatty MK, Hondred D, Fengler KA, Li B, Rafalski A (2010) Al-lelic genome structural variations in maize detected by array comparative genome hybridization. Theor Appl Genet 120: 355-367
-
(2010)
Theor Appl Genet
, vol.120
, pp. 355-367
-
-
Beló, A.1
Beatty, M.K.2
Hondred, D.3
Fengler, K.A.4
Li, B.5
Rafalski, A.6
-
7
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
Bennetzen JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42: 251-269
-
(2000)
Plant Mol Biol
, vol.42
, pp. 251-269
-
-
Bennetzen, J.L.1
-
8
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
9
-
-
3042672020
-
Functional annotation of the Arabidopsis genome using controlled vocabularies
-
Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, et al (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol 135: 745-755
-
(2004)
Plant Physiol
, vol.135
, pp. 745-755
-
-
Berardini, T.Z.1
Mundodi, S.2
Reiser, L.3
Huala, E.4
Garcia-Hernandez, M.5
Zhang, P.6
Mueller, L.A.7
Yoon, J.8
Doyle, A.9
Lander, G.10
-
10
-
-
70449477656
-
Next generation software for functional trend analysis
-
Berriz GF, Beaver JE, Cenik C, Tasan M, Roth FP (2009) Next generation software for functional trend analysis. Bioinformatics 25: 3043-3044
-
(2009)
Bioinformatics
, vol.25
, pp. 3043-3044
-
-
Berriz, G.F.1
Beaver, J.E.2
Cenik, C.3
Tasan, M.4
Roth, F.P.5
-
11
-
-
21444449723
-
Identification of a large cluster of coiled coil-nucleotide binding site-leucine rich repeat-type genes from the Rps1 region containing Phytophthora resistance genes in soybean
-
Bhattacharyya MK, Narayanan NN, Gao H, Santra DK, Salimath SS, Kasuga T, Liu Y, Espinosa B, Ellison L, Marek L, et al (2005) Identification of a large cluster of coiled coil-nucleotide binding site-leucine rich repeat-type genes from the Rps1 region containing Phytophthora resistance genes in soybean. Theor Appl Genet 111: 75-86
-
(2005)
Theor Appl Genet
, vol.111
, pp. 75-86
-
-
Bhattacharyya, M.K.1
Narayanan, N.N.2
Gao, H.3
Santra, D.K.4
Salimath, S.S.5
Kasuga, T.6
Liu, Y.7
Espinosa, B.8
Ellison, L.9
Marek, L.10
-
12
-
-
0034625046
-
Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution
-
Bishop JG, Dean AM, Mitchell-Olds T (2000) Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution. Proc Natl Acad Sci USA 97: 5322-5327
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5322-5327
-
-
Bishop, J.G.1
Dean, A.M.2
Mitchell-Olds, T.3
-
13
-
-
66249135697
-
A renaissance of elicitors: Perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors
-
Boller T, Felix G (2009) A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol 60: 379-406
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 379-406
-
-
Boller, T.1
Felix, G.2
-
14
-
-
79956046982
-
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean
-
Bolon YT, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, et al (2011) Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol 156: 240-253
-
(2011)
Plant Physiol
, vol.156
, pp. 240-253
-
-
Bolon, Y.T.1
Haun, W.J.2
Xu, W.W.3
Grant, D.4
Stacey, M.G.5
Nelson, R.T.6
Gerhardt, D.J.7
Jeddeloh, J.A.8
Stacey, G.9
Muehlbauer, G.J.10
-
15
-
-
34247231965
-
Hybrid necrosis: Autoimmunity as a potential gene-flow barrier in plant species
-
Bomblies K, Weigel D (2007) Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nat Rev Genet 8: 382-393
-
(2007)
Nat Rev Genet
, vol.8
, pp. 382-393
-
-
Bomblies, K.1
Weigel, D.2
-
16
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, et al (2011) Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet 43: 956-963
-
(2011)
Nat Genet
, vol.43
, pp. 956-963
-
-
Cao, J.1
Schneeberger, K.2
Ossowski, S.3
Günther, T.4
Bender, S.5
Fitz, J.6
Koenig, D.7
Lanz, C.8
Stegle, O.9
Lippert, C.10
-
17
-
-
77649190691
-
Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives
-
Chen Q, Han Z, Jiang H, Tian D, Yang S (2010) Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives. J Mol Evol 70: 137-148
-
(2010)
J Mol Evol
, vol.70
, pp. 137-148
-
-
Chen, Q.1
Han, Z.2
Jiang, H.3
Tian, D.4
Yang, S.5
-
20
-
-
84865865592
-
Copy number variation in the genomes of domestic animals
-
(in press)
-
Clop A, Vidal O, Amills M (2012) Copy number variation in the genomes of domestic animals. Anim Genet (in press)
-
(2012)
Anim Genet
-
-
Clop, A.1
Vidal, O.2
Amills, M.3
-
21
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, et al (2010) Origins and functional impact of copy number variation in the human genome. Nature 464: 704-712
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
Zhang, Y.6
Aerts, J.7
Andrews, T.D.8
Barnes, C.9
Campbell, P.10
-
22
-
-
77950405093
-
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
-
Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, et al (2010) Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature 464: 713-720
-
(2010)
Nature
, vol.464
, pp. 713-720
-
-
Craddock, N.1
Hurles, M.E.2
Cardin, N.3
Pearson, R.D.4
Plagnol, V.5
Robson, S.6
Vukcevic, D.7
Barnes, C.8
Conrad, D.F.9
Giannoulatou, E.10
-
23
-
-
18744371557
-
The molecular basis of co-evolution between Cladosporium ful-vum and tomato
-
de Wit PJ, Brandwagt BF, van den Burg HA, Cai X, van der Hoorn RA, de Jong CF, van Klooster J, de Kock MJ, Kruijt M, Lindhout WH, et al (2002) The molecular basis of co-evolution between Cladosporium ful-vum and tomato. Antonie van Leeuwenhoek 81: 409-412
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 409-412
-
-
de Wit, P.J.1
Brandwagt, B.F.2
van den Burg, H.A.3
Cai, X.4
van der Hoorn, R.A.5
de Jong, C.F.6
van Klooster, J.7
de Kock, M.J.8
Kruijt, M.9
Lindhout, W.H.10
-
24
-
-
33846272114
-
Plant NBS-LRR proteins in pathogen sensing and host defense
-
DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7: 1243-1249
-
(2006)
Nat Immunol
, vol.7
, pp. 1243-1249
-
-
Deyoung, B.J.1
Innes, R.W.2
-
25
-
-
84858733836
-
Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum)
-
Díaz A, Zikhali M, Turner AS, Isaac P, Laurie DA (2012) Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum). PLoS One 7: e33234
-
(2012)
PLoS One
, vol.7
-
-
Díaz, A.1
Zikhali, M.2
Turner, A.S.3
Isaac, P.4
Laurie, D.A.5
-
26
-
-
38049150491
-
A portrait of copy-number polymorphism in Drosophila melanogaster
-
Dopman EB, Hartl DL (2007) A portrait of copy-number polymorphism in Drosophila melanogaster. Proc Natl Acad Sci USA 104: 19920-19925
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19920-19925
-
-
Dopman, E.B.1
Hartl, D.L.2
-
27
-
-
77649149766
-
SoyTEdb: A comprehensive database of transposable elements in the soybean genome
-
Du J, Grant D, Tian Z, Nelson RT, Zhu L, Shoemaker RC, Ma J (2010) SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics 11: 113
-
(2010)
BMC Genomics
, vol.11
, pp. 113
-
-
Du, J.1
Grant, D.2
Tian, Z.3
Nelson, R.T.4
Zhu, L.5
Shoemaker, R.C.6
Ma, J.7
-
28
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23: 205-211
-
(2009)
Genome Inform
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
29
-
-
46249105777
-
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
-
Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M (2008) Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science 320: 1629-1631
-
(2008)
Science
, vol.320
, pp. 1629-1631
-
-
Emerson, J.J.1
Cardoso-Moreira, M.2
Borevitz, J.O.3
Long, M.4
-
30
-
-
33847290449
-
Intra-cultivar variation for seed weight and other agronomic traits within three elite soybean cultivars
-
Fasoula VA, Boerma HR (2007) Intra-cultivar variation for seed weight and other agronomic traits within three elite soybean cultivars. Crop Sci 47: 367-373
-
(2007)
Crop Sci
, vol.47
, pp. 367-373
-
-
Fasoula, V.A.1
Boerma, H.R.2
-
32
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, et al (2010) The Pfam protein families database. Nucleic Acids Res 38: D211-D222
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
-
33
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, et al (2011) Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477: 419-423
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
Stegle, O.2
Behr, J.3
Steffen, J.G.4
Drewe, P.5
Hildebrand, K.L.6
Lyngsoe, R.7
Schultheiss, S.J.8
Osborne, E.J.9
Sreedharan, V.T.10
-
34
-
-
80053542924
-
Copy number variation analysis in the great apes reveals species-specific patterns of structural variation
-
Gazave E, Darré F, Morcillo-Suarez C, Petit-Marty N, Carreño A, Marigorta UM, Ryder OA, Blancher A, Rocchi M, Bosch E, et al (2011) Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome Res 21: 1626-1639
-
(2011)
Genome Res
, vol.21
, pp. 1626-1639
-
-
Gazave, E.1
Darré, F.2
Morcillo-Suarez, C.3
Petit-Marty, N.4
Carreño, A.5
Marigorta, U.M.6
Ryder, O.A.7
Blancher, A.8
Rocchi, M.9
Bosch, E.10
-
35
-
-
80755187820
-
Human copy number variation and complex genetic disease
-
Girirajan S, Campbell CD, Eichler EE (2011) Human copy number variation and complex genetic disease. Annu Rev Genet 45: 203-226
-
(2011)
Annu Rev Genet
, vol.45
, pp. 203-226
-
-
Girirajan, S.1
Campbell, C.D.2
Eichler, E.E.3
-
36
-
-
79957639498
-
Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection
-
Gokcumen O, Babb PL, Iskow R, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, et al (2011) Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection. Genome Biol 12: R52
-
(2011)
Genome Biol
, vol.12
-
-
Gokcumen, O.1
Babb, P.L.2
Iskow, R.3
Zhu, Q.4
Shi, X.5
Mills, R.E.6
Ionita-Laza, I.7
Vallender, E.J.8
Clark, A.G.9
Johnson, W.E.10
-
37
-
-
84861075586
-
KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant
-
Golzio C, Willer J, Talkowski ME, Oh EC, Taniguchi Y, Jacquemont S, Reymond A, Sun M, Sawa A, Gusella JF, et al (2012) KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant. Nature 485: 363-367
-
(2012)
Nature
, vol.485
, pp. 363-367
-
-
Golzio, C.1
Willer, J.2
Talkowski, M.E.3
Oh, E.C.4
Taniguchi, Y.5
Jacquemont, S.6
Reymond, A.7
Sun, M.8
Sawa, A.9
Gusella, J.F.10
-
38
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, et al (2009) A first-generation haplotype map of maize. Science 326: 1115-1117
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Peiffer, J.A.7
McMullen, M.D.8
Grills, G.S.9
Ross-Ibarra, J.10
-
39
-
-
33846614650
-
A high-resolution map of segmental DNA copy number variation in the mouse genome
-
Graubert TA, Cahan P, Edwin D, Selzer RR, Richmond TA, Eis PS, Shannon WD, Li X, McLeod HL, Cheverud JM, et al (2007) A high-resolution map of segmental DNA copy number variation in the mouse genome. PLoS Genet 3: e3
-
(2007)
PLoS Genet
, vol.3
-
-
Graubert, T.A.1
Cahan, P.2
Edwin, D.3
Selzer, R.R.4
Richmond, T.A.5
Eis, P.S.6
Shannon, W.D.7
Li, X.8
McLeod, H.L.9
Cheverud, J.M.10
-
40
-
-
80053598318
-
Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis
-
Guo YL, Fitz J, Schneeberger K, Ossowski S, Cao J, Weigel D (2011) Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol 157: 757-769
-
(2011)
Plant Physiol
, vol.157
, pp. 757-769
-
-
Guo, Y.L.1
Fitz, J.2
Schneeberger, K.3
Ossowski, S.4
Cao, J.5
Weigel, D.6
-
41
-
-
42649117472
-
Distribution and functional impact of DNA copy number variation in the rat
-
Guryev V, Saar K, Adamovic T, Verheul M, van Heesch SA, Cook S, Pravenec M, Aitman T, Jacob H, Shull JD, et al (2008) Distribution and functional impact of DNA copy number variation in the rat. Nat Genet 40: 538-545
-
(2008)
Nat Genet
, vol.40
, pp. 538-545
-
-
Guryev, V.1
Saar, K.2
Adamovic, T.3
Verheul, M.4
van Heesch, S.A.5
Cook, S.6
Pravenec, M.7
Aitman, T.8
Jacob, H.9
Shull, J.D.10
-
42
-
-
79551699087
-
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82
-
Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, et al (2011) The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol 155: 645-655
-
(2011)
Plant Physiol
, vol.155
, pp. 645-655
-
-
Haun, W.J.1
Hyten, D.L.2
Xu, W.W.3
Gerhardt, D.J.4
Albert, T.J.5
Richmond, T.6
Jeddeloh, J.A.7
Jia, G.8
Springer, N.M.9
Vance, C.P.10
-
43
-
-
1642397611
-
Recombination within a nucleotide-binding-site/leucine-rich-repeat gene cluster produces new variants conditioning resistance to soybean mosaic virus in soybeans
-
Hayes AJ, Jeong SC, Gore MA, Yu YG, Buss GR, Tolin SA, Maroof MA (2004) Recombination within a nucleotide-binding-site/leucine-rich-repeat gene cluster produces new variants conditioning resistance to soybean mosaic virus in soybeans. Genetics 166: 493-503
-
(2004)
Genetics
, vol.166
, pp. 493-503
-
-
Hayes, A.J.1
Jeong, S.C.2
Gore, M.A.3
Yu, Y.G.4
Buss, G.R.5
Tolin, S.A.6
Maroof, M.A.7
-
44
-
-
84858442084
-
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle
-
Hou Y, Liu GE, Bickhart DM, Matukumalli LK, Li C, Song J, Gasbarre LC, Van Tassell CP, Sonstegard TS (2012) Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics 12: 81-92
-
(2012)
Funct Integr Genomics
, vol.12
, pp. 81-92
-
-
Hou, Y.1
Liu, G.E.2
Bickhart, D.M.3
Matukumalli, L.K.4
Li, C.5
Song, J.6
Gasbarre, L.C.7
van Tassell, C.P.8
Sonstegard, T.S.9
-
45
-
-
76749107192
-
A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping
-
Hyten DL, Choi IY, Song QJ, Specht JE, Carter TE, Shoemaker RC, Hwang EY, Matukumalli LK, Cregan PB (2010) A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping. Crop Sci 50: 960-968
-
(2010)
Crop Sci
, vol.50
, pp. 960-968
-
-
Hyten, D.L.1
Choi, I.Y.2
Song, Q.J.3
Specht, J.E.4
Carter, T.E.5
Shoemaker, R.C.6
Hwang, E.Y.7
Matukumalli, L.K.8
Cregan, P.B.9
-
46
-
-
33750964714
-
Impacts of genetic bottlenecks on soybean genome diversity
-
Hyten DL, Song Q, Zhu Y, Choi IY, Nelson RL, Costa JM, Specht JE, Shoemaker RC, Cregan PB (2006) Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci USA 103: 16666-16671
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16666-16671
-
-
Hyten, D.L.1
Song, Q.2
Zhu, Y.3
Choi, I.Y.4
Nelson, R.L.5
Costa, J.M.6
Specht, J.E.7
Shoemaker, R.C.8
Cregan, P.B.9
-
47
-
-
57749105200
-
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean
-
Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, et al (2008) Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol 148: 1740-1759
-
(2008)
Plant Physiol
, vol.148
, pp. 1740-1759
-
-
Innes, R.W.1
Ameline-Torregrosa, C.2
Ashfield, T.3
Cannon, E.4
Cannon, S.B.5
Chacko, B.6
Chen, N.W.7
Couloux, A.8
Dalwani, A.9
Denny, R.10
-
48
-
-
33751100626
-
The plant immune system
-
Jones JD, Dangl JL (2006) The plant immune system. Nature 444: 323-329
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.D.1
Dangl, J.L.2
-
49
-
-
18744403991
-
An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes
-
Kahsay RY, Gao G, Liao L (2005) An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. Bioinformatics 21: 1853-1858
-
(2005)
Bioinformatics
, vol.21
, pp. 1853-1858
-
-
Kahsay, R.Y.1
Gao, G.2
Liao, L.3
-
50
-
-
78650668282
-
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
-
Kim MY, Lee S, Van K, Kim TH, Jeong SC, Choi IY, Kim DS, Lee YS, Park D, Ma J, et al (2010) Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci USA 107: 22032-22037
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 22032-22037
-
-
Kim, M.Y.1
Lee, S.2
Van, K.3
Kim, T.H.4
Jeong, S.C.5
Choi, I.Y.6
Kim, D.S.7
Lee, Y.S.8
Park, D.9
Ma, J.10
-
51
-
-
77955502865
-
CBF gene copy number variation at frost resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals
-
Knox AK, Dhillon T, Cheng H, Tondelli A, Pecchioni N, Stockinger EJ (2010) CBF gene copy number variation at frost resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals. Theor Appl Genet 121: 21-35
-
(2010)
Theor Appl Genet
, vol.121
, pp. 21-35
-
-
Knox, A.K.1
Dhillon, T.2
Cheng, H.3
Tondelli, A.4
Pecchioni, N.5
Stockinger, E.J.6
-
52
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
53
-
-
13844321118
-
Receptor-like proteins involved in plant disease resistance
-
Kruijt M, DE Kock MJ, de Wit PJ (2005) Receptor-like proteins involved in plant disease resistance. Mol Plant Pathol 6: 85-97
-
(2005)
Mol Plant Pathol
, vol.6
, pp. 85-97
-
-
Kruijt, M.1
de Kock, M.J.2
de Wit, P.J.3
-
54
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai J, Li R, Xu X, Jin W, Xu M, Zhao H, Xiang Z, Song W, Ying K, Zhang M, et al (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 42: 1027-1030
-
(2010)
Nat Genet
, vol.42
, pp. 1027-1030
-
-
Lai, J.1
Li, R.2
Xu, X.3
Jin, W.4
Xu, M.5
Zhao, H.6
Xiang, Z.7
Song, W.8
Ying, K.9
Zhang, M.10
-
55
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, Qin N, Wang B, et al (2010) Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet 42: 1053-1059
-
(2010)
Nat Genet
, vol.42
, pp. 1053-1059
-
-
Lam, H.M.1
Xu, X.2
Liu, X.3
Chen, W.4
Yang, G.5
Wong, F.L.6
Li, M.W.7
He, W.8
Qin, N.9
Wang, B.10
-
56
-
-
0029014401
-
Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another
-
Lark KG, Chase K, Adler F, Mansur LM, Orf JH (1995) Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another. Proc Natl Acad Sci USA 92: 4656-4660
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 4656-4660
-
-
Lark, K.G.1
Chase, K.2
Adler, F.3
Mansur, L.M.4
Orf, J.H.5
-
57
-
-
41849091509
-
Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies
-
Lee AS, Gutiérrez-Arcelus M, Perry GH, Vallender EJ, Johnson WE, Miller GM, Korbel JO, Lee C (2008) Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies. Hum Mol Genet 17: 1127-1136
-
(2008)
Hum Mol Genet
, vol.17
, pp. 1127-1136
-
-
Lee, A.S.1
Gutiérrez-Arcelus, M.2
Perry, G.H.3
Vallender, E.J.4
Johnson, W.E.5
Miller, G.M.6
Korbel, J.O.7
Lee, C.8
-
58
-
-
67650302503
-
Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes
-
Lee SK, Song MY, Seo YS, Kim HK, Ko S, Cao PJ, Suh JP, Yi G, Roh JH, Lee S, et al (2009) Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes. Genetics 181: 1627-1638
-
(2009)
Genetics
, vol.181
, pp. 1627-1638
-
-
Lee, S.K.1
Song, M.Y.2
Seo, Y.S.3
Kim, H.K.4
Ko, S.5
Cao, P.J.6
Suh, J.P.7
Yi, G.8
Roh, J.H.9
Lee, S.10
-
59
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
60
-
-
77951798133
-
Analysis of copy number variations among diverse cattle breeds
-
Liu GE, Hou Y, Zhu B, Cardone MF, Jiang L, Cellamare A, Mitra A, Alexander LJ, Coutinho LL, Dell'Aquila ME, et al (2010) Analysis of copy number variations among diverse cattle breeds. Genome Res 20: 693-703
-
(2010)
Genome Res
, vol.20
, pp. 693-703
-
-
Liu, G.E.1
Hou, Y.2
Zhu, B.3
Cardone, M.F.4
Jiang, L.5
Cellamare, A.6
Mitra, A.7
Alexander, L.J.8
Coutinho, L.L.9
Dell'Aquila, M.E.10
-
61
-
-
84863229351
-
Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis
-
Lu P, Han X, Qi J, Yang J, Wijeratne AJ, Li T, Ma H (2012) Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis. Genome Res 22: 508-518
-
(2012)
Genome Res
, vol.22
, pp. 508-518
-
-
Lu, P.1
Han, X.2
Qi, J.3
Yang, J.4
Wijeratne, A.J.5
Li, T.6
Ma, H.7
-
62
-
-
80055085714
-
Successive increases in the resistance of Drosophila to viral infection through a transposon insertion followed by a duplication
-
Magwire MM, Bayer F, Webster CL, Cao C, Jiggins FM (2011) Successive increases in the resistance of Drosophila to viral infection through a transposon insertion followed by a duplication. PLoS Genet 7: e1002337
-
(2011)
PLoS Genet
, vol.7
-
-
Magwire, M.M.1
Bayer, F.2
Webster, C.L.3
Cao, C.4
Jiggins, F.M.5
-
63
-
-
76949092432
-
Copy number variation in the genomes of twelve natural isolates of Caeno-rhabditis elegans
-
Maydan JS, Lorch A, Edgley ML, Flibotte S, Moerman DG (2010) Copy number variation in the genomes of twelve natural isolates of Caeno-rhabditis elegans. BMC Genomics 11: 62
-
(2010)
BMC Genomics
, vol.11
, pp. 62
-
-
Maydan, J.S.1
Lorch, A.2
Edgley, M.L.3
Flibotte, S.4
Moerman, D.G.5
-
64
-
-
0037390933
-
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
-
Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15: 809-834
-
(2003)
Plant Cell
, vol.15
, pp. 809-834
-
-
Meyers, B.C.1
Kozik, A.2
Griego, A.3
Kuang, H.4
Michelmore, R.W.5
-
65
-
-
27844526579
-
Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana
-
Mondragón-Palomino M, Gaut BS (2005) Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol Biol Evol 22: 2444-2456
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2444-2456
-
-
Mondragón-Palomino, M.1
Gaut, B.S.2
-
66
-
-
0036739297
-
Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana
-
Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS (2002) Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res 12: 1305-1315
-
(2002)
Genome Res
, vol.12
, pp. 1305-1315
-
-
Mondragón-Palomino, M.1
Meyers, B.C.2
Michelmore, R.W.3
Gaut, B.S.4
-
68
-
-
80051625199
-
A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog
-
Nicholas TJ, Baker C, Eichler EE, Akey JM (2011) A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog. BMC Genomics 12: 414
-
(2011)
BMC Genomics
, vol.12
, pp. 414
-
-
Nicholas, T.J.1
Baker, C.2
Eichler, E.E.3
Akey, J.M.4
-
69
-
-
61849144443
-
The genomic architecture of segmental duplications and associated copy number variants in dogs
-
Nicholas TJ, Cheng Z, Ventura M, Mealey K, Eichler EE, Akey JM (2009) The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res 19: 491-499
-
(2009)
Genome Res
, vol.19
, pp. 491-499
-
-
Nicholas, T.J.1
Cheng, Z.2
Ventura, M.3
Mealey, K.4
Eichler, E.E.5
Akey, J.M.6
-
70
-
-
0033399549
-
Genetics of soybean agronomic traits. I. Comparison of three related recombinant inbred populations
-
Orf JH, Chase K, Jarvik T, Mansur LM, Cregan PB, Adler FR, Lark KG (1999) Genetics of soybean agronomic traits. I. Comparison of three related recombinant inbred populations. Crop Sci 39: 1642-1651
-
(1999)
Crop Sci
, vol.39
, pp. 1642-1651
-
-
Orf, J.H.1
Chase, K.2
Jarvik, T.3
Mansur, L.M.4
Cregan, P.B.5
Adler, F.R.6
Lark, K.G.7
-
71
-
-
1542320127
-
Registration of 'MN1302' soybean
-
Orf JH, Denny RL (2004) Registration of 'MN1302' soybean. Crop Sci 44: 693
-
(2004)
Crop Sci
, vol.44
, pp. 693
-
-
Orf, J.H.1
Denny, R.L.2
-
72
-
-
82755162948
-
Molecular characterisation of Rht-1 dwarfing genes in hexaploid wheat
-
Pearce S, Saville R, Vaughan SP, Chandler PM, Wilhelm EP, Sparks CA, Korolev A, Al-Kaff N, Boulton MI, Phillips AL, et al (2011) Molecular characterisation of Rht-1 dwarfing genes in hexaploid wheat. Plant Physiol 157: 1820-1831
-
(2011)
Plant Physiol
, vol.157
, pp. 1820-1831
-
-
Pearce, S.1
Saville, R.2
Vaughan, S.P.3
Chandler, P.M.4
Wilhelm, E.P.5
Sparks, C.A.6
Korolev, A.7
Al-Kaff, N.8
Boulton, M.I.9
Phillips, A.L.10
-
73
-
-
34748895999
-
Diet and the evolution of human amylase gene copy number variation
-
Perry GH, Dominy NJ, Claw KG, Lee AS, Fiegler H, Redon R, Werner J, Villanea FA, Mountain JL, Misra R, et al (2007) Diet and the evolution of human amylase gene copy number variation. Nat Genet 39: 1256-1260
-
(2007)
Nat Genet
, vol.39
, pp. 1256-1260
-
-
Perry, G.H.1
Dominy, N.J.2
Claw, K.G.3
Lee, A.S.4
Fiegler, H.5
Redon, R.6
Werner, J.7
Villanea, F.A.8
Mountain, J.L.9
Misra, R.10
-
74
-
-
33744455443
-
Hotspots for copy number variation in chimpanzees and humans
-
Perry GH, Tchinda J, McGrath SD, Zhang J, Picker SR, Cáceres AM, Iafrate AJ, Tyler-Smith C, Scherer SW, Eichler EE, et al (2006) Hotspots for copy number variation in chimpanzees and humans. Proc Natl Acad Sci USA 103: 8006-8011
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8006-8011
-
-
Perry, G.H.1
Tchinda, J.2
McGrath, S.D.3
Zhang, J.4
Picker, S.R.5
Cáceres, A.M.6
Iafrate, A.J.7
Tyler-Smith, C.8
Scherer, S.W.9
Eichler, E.E.10
-
75
-
-
55549143682
-
Copy number variation and evolution in humans and chimpanzees
-
Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Stone AC, Hurles ME, Tyler-Smith C, et al (2008) Copy number variation and evolution in humans and chimpanzees. Genome Res 18: 1698-1710
-
(2008)
Genome Res
, vol.18
, pp. 1698-1710
-
-
Perry, G.H.1
Yang, F.2
Marques-Bonet, T.3
Murphy, C.4
Fitzgerald, T.5
Lee, A.S.6
Hyland, C.7
Stone, A.C.8
Hurles, M.E.9
Tyler-Smith, C.10
-
76
-
-
78649723391
-
Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease
-
Ravensdale M, Nemri A, Thrall PH, Ellis JG, Dodds PN (2011) Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease. Mol Plant Pathol 12: 93-102
-
(2011)
Mol Plant Pathol
, vol.12
, pp. 93-102
-
-
Ravensdale, M.1
Nemri, A.2
Thrall, P.H.3
Ellis, J.G.4
Dodds, P.N.5
-
77
-
-
0036136234
-
Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution
-
Richly E, Kurth J, Leister D (2002) Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution. Mol Biol Evol 19: 76-84
-
(2002)
Mol Biol Evol
, vol.19
, pp. 76-84
-
-
Richly, E.1
Kurth, J.2
Leister, D.3
-
78
-
-
79953190777
-
Diversity in copy number and structure of a silkworm morphogenetic gene as a result of domestication
-
Sakudoh T, Nakashima T, Kuroki Y, Fujiyama A, Kohara Y, Honda N, Fujimoto H, Shimada T, Nakagaki M, Banno Y, et al (2011) Diversity in copy number and structure of a silkworm morphogenetic gene as a result of domestication. Genetics 187: 965-976
-
(2011)
Genetics
, vol.187
, pp. 965-976
-
-
Sakudoh, T.1
Nakashima, T.2
Kuroki, Y.3
Fujiyama, A.4
Kohara, Y.5
Honda, N.6
Fujimoto, H.7
Shimada, T.8
Nakagaki, M.9
Banno, Y.10
-
79
-
-
11244304325
-
Deletion of a disease resistance nucleotide-binding-site leucine-rich-repeat-like sequence is associated with the loss of the Phytophthora resistance gene Rps4 in soybean
-
Sandhu D, Gao H, Cianzio S, Bhattacharyya MK (2004) Deletion of a disease resistance nucleotide-binding-site leucine-rich-repeat-like sequence is associated with the loss of the Phytophthora resistance gene Rps4 in soybean. Genetics 168: 2157-2167
-
(2004)
Genetics
, vol.168
, pp. 2157-2167
-
-
Sandhu, D.1
Gao, H.2
Cianzio, S.3
Bhattacharyya, M.K.4
-
80
-
-
77349109984
-
Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays
-
Santuari L, Pradervand S, Amiguet-Vercher AM, Thomas J, Dorcey E, Harshman K, Xenarios I, Juenger TE, Hardtke CS (2010) Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays. Genome Biol 11: R4
-
(2010)
Genome Biol
, vol.11
-
-
Santuari, L.1
Pradervand, S.2
Amiguet-Vercher, A.M.3
Thomas, J.4
Dorcey, E.5
Harshman, K.6
Xenarios, I.7
Juenger, T.E.8
Hardtke, C.S.9
-
81
-
-
77954154377
-
Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus
-
Schmidt JM, Good RT, Appleton B, Sherrard J, Raymant GC, Bogwitz MR, Martin J, Daborn PJ, Goddard ME, Batterham P, et al (2010) Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus. PLoS Genet 6: e1000998
-
(2010)
PLoS Genet
, vol.6
-
-
Schmidt, J.M.1
Good, R.T.2
Appleton, B.3
Sherrard, J.4
Raymant, G.C.5
Bogwitz, M.R.6
Martin, J.7
Daborn, P.J.8
Goddard, M.E.9
Batterham, P.10
-
82
-
-
74549221016
-
Genome sequence of the pa-laeopolyploid soybean
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, et al (2010) Genome sequence of the pa-laeopolyploid soybean. Nature 463: 178-183
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
-
83
-
-
0001477801
-
Registration of Essex soybean
-
Smith TJ, Camper HM (1973) Registration of Essex soybean. Crop Sci 13: 495
-
(1973)
Crop Sci
, vol.13
, pp. 495
-
-
Smith, T.J.1
Camper, H.M.2
-
84
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, et al (2009) Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet 5: e1000734
-
(2009)
PLoS Genet
, vol.5
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
Ji, T.4
Yeh, C.T.5
Jia, Y.6
Wu, W.7
Richmond, T.8
Kitzman, J.9
Rosenbaum, H.10
-
85
-
-
77949831756
-
Structural variation in the human genome and its role in disease
-
Stankiewicz P, Lupski JR (2010) Structural variation in the human genome and its role in disease. Annu Rev Med 61: 437-455
-
(2010)
Annu Rev Med
, vol.61
, pp. 437-455
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
86
-
-
78049412267
-
Diversity of human copy number variation and multicopy genes
-
Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE (2010) Diversity of human copy number variation and multicopy genes. Science 330: 641-646
-
(2010)
Science
, vol.330
, pp. 641-646
-
-
Sudmant, P.H.1
Kitzman, J.O.2
Antonacci, F.3
Alkan, C.4
Malig, M.5
Tsalenko, A.6
Sampas, N.7
Bruhn, L.8
Shendure, J.9
Eichler, E.E.10
-
87
-
-
36749007180
-
Boron-toxicity tolerance in barley arising from efflux transporter amplification
-
Sutton T, Baumann U, Hayes J, Collins NC, Shi BJ, Schnurbusch T, Hay A, Mayo G, Pallotta M, Tester M, et al (2007) Boron-toxicity tolerance in barley arising from efflux transporter amplification. Science 318: 1446-1449
-
(2007)
Science
, vol.318
, pp. 1446-1449
-
-
Sutton, T.1
Baumann, U.2
Hayes, J.3
Collins, N.C.4
Shi, B.J.5
Schnurbusch, T.6
Hay, A.7
Mayo, G.8
Pallotta, M.9
Tester, M.10
-
88
-
-
78549273825
-
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
-
Swanson-Wagner RA, Eichten SR, Kumari S, Tiffin P, Stein JC, Ware D, Springer NM (2010) Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res 20: 1689-1699
-
(2010)
Genome Res
, vol.20
, pp. 1689-1699
-
-
Swanson-Wagner, R.A.1
Eichten, S.R.2
Kumari, S.3
Tiffin, P.4
Stein, J.C.5
Ware, D.6
Springer, N.M.7
-
89
-
-
75149181819
-
The arms race between tomato and Fusarium oxysporum
-
Takken F, Rep M (2010) The arms race between tomato and Fusarium oxysporum. Mol Plant Pathol 11: 309-314
-
(2010)
Mol Plant Pathol
, vol.11
, pp. 309-314
-
-
Takken, F.1
Rep, M.2
-
90
-
-
0037653656
-
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
-
Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J (2003) Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423: 74-77
-
(2003)
Nature
, vol.423
, pp. 74-77
-
-
Tian, D.1
Traw, M.B.2
Chen, J.Q.3
Kreitman, M.4
Bergelson, J.5
-
91
-
-
3042671841
-
Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLAVATA2 and tomato Cf-9
-
Tör M, Brown D, Cooper A, Woods-Tör A, Sjölander K, Jones JD, Holub EB (2004) Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLAVATA2 and tomato Cf-9. Plant Physiol 135: 1100-1112
-
(2004)
Plant Physiol
, vol.135
, pp. 1100-1112
-
-
Tör, M.1
Brown, D.2
Cooper, A.3
Woods-Tör, A.4
Sjölander, K.5
Jones, J.D.6
Holub, E.B.7
-
92
-
-
80052923508
-
Rapid genotyping of soybean cultivars using high throughput sequencing
-
Varala K, Swaminathan K, Li Y, Hudson ME (2011) Rapid genotyping of soybean cultivars using high throughput sequencing. PLoS ONE 6: e24811
-
(2011)
PLoS ONE
, vol.6
-
-
Varala, K.1
Swaminathan, K.2
Li, Y.3
Hudson, M.E.4
-
93
-
-
57749085447
-
Replication of nonautonomous retroelements in soybean appears to be both recent and common
-
Wawrzynski A, Ashfield T, Chen NW, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, et al (2008) Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiol 148: 1760-1771
-
(2008)
Plant Physiol
, vol.148
, pp. 1760-1771
-
-
Wawrzynski, A.1
Ashfield, T.2
Chen, N.W.3
Mammadov, J.4
Nguyen, A.5
Podicheti, R.6
Cannon, S.B.7
Thareau, V.8
Ameline-Torregrosa, C.9
Cannon, E.10
-
94
-
-
19744371138
-
The effects of artificial selection on the maize genome
-
Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS (2005) The effects of artificial selection on the maize genome. Science 308: 1310-1314
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
McMullen, M.D.6
Gaut, B.S.7
-
95
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
-
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, et al (2012) Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol 30: 105-111
-
(2012)
Nat Biotechnol
, vol.30
, pp. 105-111
-
-
Xu, X.1
Liu, X.2
Ge, S.3
Jensen, J.D.4
Hu, F.5
Li, X.6
Dong, Y.7
Gutenkunst, R.N.8
Fang, L.9
Huang, L.10
-
96
-
-
84863927733
-
SSR-marker analysis of the in-tracultivar phenotypic variation discovered within 3 soybean cultivars
-
Yates JL, Boerma HR, Fasoula VA (2012) SSR-marker analysis of the in-tracultivar phenotypic variation discovered within 3 soybean cultivars. J Hered 103: 570-578
-
(2012)
J Hered
, vol.103
, pp. 570-578
-
-
Yates, J.L.1
Boerma, H.R.2
Fasoula, V.A.3
-
97
-
-
79960559334
-
Detection of copy number variations in rice using array-based comparative genomic hybridization
-
Yu P, Wang C, Xu Q, Feng Y, Yuan X, Yu H, Wang Y, Tang S, Wei X (2011) Detection of copy number variations in rice using array-based comparative genomic hybridization. BMC Genomics 12: 372
-
(2011)
BMC Genomics
, vol.12
, pp. 372
-
-
Yu, P.1
Wang, C.2
Xu, Q.3
Feng, Y.4
Yuan, X.5
Yu, H.6
Wang, Y.7
Tang, S.8
Wei, X.9
-
98
-
-
78049405533
-
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors
-
Zhang M, Wu YH, Lee MK, Liu YH, Rong Y, Santos TS, Wu C, Xie F, Nelson RL, Zhang HB (2010) Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors. Nucleic Acids Res 38: 6513-6525
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6513-6525
-
-
Zhang, M.1
Wu, Y.H.2
Lee, M.K.3
Liu, Y.H.4
Rong, Y.5
Santos, T.S.6
Wu, C.7
Xie, F.8
Nelson, R.L.9
Zhang, H.B.10
-
99
-
-
79952214722
-
Relative evolutionary rates of NBS-encoding genes revealed by soybean seg-mental duplication
-
Zhang X, Feng Y, Cheng H, Tian D, Yang S, Chen JQ (2011) Relative evolutionary rates of NBS-encoding genes revealed by soybean seg-mental duplication. Mol Genet Genomics 285: 79-90
-
(2011)
Mol Genet Genomics
, vol.285
, pp. 79-90
-
-
Zhang, X.1
Feng, Y.2
Cheng, H.3
Tian, D.4
Yang, S.5
Chen, J.Q.6
-
100
-
-
81355147024
-
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
-
Zheng LY, Guo XS, He B, Sun LJ, Peng Y, Dong SS, Liu TF, Jiang S, Ramachandran S, Liu CM, et al (2011) Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol 12: R114
-
(2011)
Genome Biol
, vol.12
-
-
Zheng, L.Y.1
Guo, X.S.2
He, B.3
Sun, L.J.4
Peng, Y.5
Dong, S.S.6
Liu, T.F.7
Jiang, S.8
Ramachandran, S.9
Liu, C.M.10
-
101
-
-
0037355118
-
Single-nu-cleotide polymorphisms in soybean
-
Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Cregan PB (2003) Single-nu-cleotide polymorphisms in soybean. Genetics 163: 1123-1134
-
(2003)
Genetics
, vol.163
, pp. 1123-1134
-
-
Zhu, Y.L.1
Song, Q.J.2
Hyten, D.L.3
van Tassell, C.P.4
Matukumalli, L.K.5
Grimm, D.R.6
Hyatt, S.M.7
Fickus, E.W.8
Young, N.D.9
Cregan, P.B.10
-
102
-
-
68149128399
-
Early molecular events in PAMP-triggered immunity
-
Zipfel C (2009) Early molecular events in PAMP-triggered immunity. Curr Opin Plant Biol 12: 414-420
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 414-420
-
-
Zipfel, C.1
|