-
1
-
-
24644457076
-
Novel patterns of gene expression in polyploid plants
-
Adams, K.L. and Wendel, J.F. (2005) Novel patterns of gene expression in polyploid plants. Trends Genet. 21, 539-543.
-
(2005)
Trends Genet.
, vol.21
, pp. 539-543
-
-
Adams, K.L.1
Wendel, J.F.2
-
2
-
-
67749088031
-
Single nucleotide polymorphism genotyping in polyploidy wheat with the Illumina GoldenGate assay
-
Akhunov, E., Nicolet, C. and Dvorak, J. (2009) Single nucleotide polymorphism genotyping in polyploidy wheat with the Illumina GoldenGate assay. Theor. Appl. Genet. 119, 507-517.
-
(2009)
Theor. Appl. Genet.
, vol.119
, pp. 507-517
-
-
Akhunov, E.1
Nicolet, C.2
Dvorak, J.3
-
3
-
-
78649998799
-
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes
-
Akhunov, E.D., Akhunova, A.R., Anderson, O.D., Anderson, J.A., Blake, N., Clegg, M.T., Coleman-Derr, D., Conley, E.J., Crossman, C.C., Deal, K.R., Dubcovsky, J., Gill, B.S., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Luo, M.C., Ma, Y.Q., Matthews, D.E., McGuire, P.E., Morrell, P.L., Qualset, C.O., Renfro, J., Tabanao, D., Talbert, L.E., Tian, C., Toleno, D.M., Warburton, M.L., You, F.M., Zhang, W. and Dvorak, J. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics, 11, 702.
-
(2010)
BMC Genomics
, vol.11
, pp. 702
-
-
Akhunov, E.D.1
Akhunova, A.R.2
Anderson, O.D.3
Anderson, J.A.4
Blake, N.5
Clegg, M.T.6
Coleman-Derr, D.7
Conley, E.J.8
Crossman, C.C.9
Deal, K.R.10
Dubcovsky, J.11
Gill, B.S.12
Gu, Y.Q.13
Hadam, J.14
Heo, H.15
Huo, N.16
Lazo, G.R.17
Luo, M.C.18
Ma, Y.Q.19
Matthews, D.E.20
McGuire, P.E.21
Morrell, P.L.22
Qualset, C.O.23
Renfro, J.24
Tabanao, D.25
Talbert, L.E.26
Tian, C.27
Toleno, D.M.28
Warburton, M.L.29
You, F.M.30
Zhang, W.31
Dvorak, J.32
more..
-
4
-
-
79952114068
-
Homoeolog-specific transcriptional bias in allopolyploid wheat
-
Akhunova, A.R., Matniyazov, R.T., Liang, H. and Akhunov, E.D. (2010) Homoeolog-specific transcriptional bias in allopolyploid wheat. BMC Genomics, 11, 505.
-
(2010)
BMC Genomics
, vol.11
, pp. 505
-
-
Akhunova, A.R.1
Matniyazov, R.T.2
Liang, H.3
Akhunov, E.D.4
-
5
-
-
80955133916
-
Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)
-
Allen, A.M., Barker, G.L., Berry, S.T., Coghill, J.A., Gwilliam, R., Kirby, S., Robinson, P., Brenchley, R.C., D'Amore, R., McKenzie, N., Waite, D., Hall, A., Bevan, M., Hall, N. and Edwards, K.J. (2011) Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol. J. 9, 1086-1099.
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 1086-1099
-
-
Allen, A.M.1
Barker, G.L.2
Berry, S.T.3
Coghill, J.A.4
Gwilliam, R.5
Kirby, S.6
Robinson, P.7
Brenchley, R.C.8
D'Amore, R.9
McKenzie, N.10
Waite, D.11
Hall, A.12
Bevan, M.13
Hall, N.14
Edwards, K.J.15
-
6
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
7
-
-
84858592204
-
Next generation sequencing applications for wheat crop improvement
-
Berkman, P.J., Lai, K., Lorenc, M.T. and Edwards, D. (2012) Next generation sequencing applications for wheat crop improvement. Am. J. Bot. 99, 365-371.
-
(2012)
Am. J. Bot.
, vol.99
, pp. 365-371
-
-
Berkman, P.J.1
Lai, K.2
Lorenc, M.T.3
Edwards, D.4
-
8
-
-
80052851827
-
Exome sequencing: the expert view
-
Biesecker, L.G., Shianna, K.V. and Mullikin, J.C. (2011) Exome sequencing: the expert view. Genome Biol. 12, 128.
-
(2011)
Genome Biol.
, vol.12
, pp. 128
-
-
Biesecker, L.G.1
Shianna, K.V.2
Mullikin, J.C.3
-
9
-
-
3142733558
-
Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor
-
Caldwell, K.S., Dvorak, J., Lagudah, E.S., Akhunov, E., Luo, M.C., Wolters, P. and Powell, W. (2004) Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics, 167, 941-947.
-
(2004)
Genetics
, vol.167
, pp. 941-947
-
-
Caldwell, K.S.1
Dvorak, J.2
Lagudah, E.S.3
Akhunov, E.4
Luo, M.C.5
Wolters, P.6
Powell, W.7
-
10
-
-
56649109801
-
Analysis of gene-derived SNP marker polymorphism in US wheat (Triticum aestivum L.) cultivars
-
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M.C. and Dubcovsky, J. (2009) Analysis of gene-derived SNP marker polymorphism in US wheat (Triticum aestivum L.) cultivars. Mol. Breed. 23, 23-33.
-
(2009)
Mol. Breed.
, vol.23
, pp. 23-33
-
-
Chao, S.1
Zhang, W.2
Akhunov, E.3
Sherman, J.4
Ma, Y.5
Luo, M.C.6
Dubcovsky, J.7
-
11
-
-
78650614679
-
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)
-
Chao, S., Dubcovsky, J., Dvorak, J., Luo, M.C., Baenziger, S.P., Matnyazov, R., Clark, D.R., Talbert, L.E., Anderson, J.A., Dreisigacker, S., Glover, K., Chen, J., Campbell, K., Bruckner, P.L., Rudd, J.C., Haley, S., Carver, B.F., Perry, S., Sorrells, M.E. and Akhunov, E.D. (2010) Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics, 11, 727.
-
(2010)
BMC Genomics
, vol.11
, pp. 727
-
-
Chao, S.1
Dubcovsky, J.2
Dvorak, J.3
Luo, M.C.4
Baenziger, S.P.5
Matnyazov, R.6
Clark, D.R.7
Talbert, L.E.8
Anderson, J.A.9
Dreisigacker, S.10
Glover, K.11
Chen, J.12
Campbell, K.13
Bruckner, P.L.14
Rudd, J.C.15
Haley, S.16
Carver, B.F.17
Perry, S.18
Sorrells, M.E.19
Akhunov, E.D.20
more..
-
12
-
-
33646538701
-
Characterisation of single nucleotide polymorphisms in sugarcane ESTs
-
Cordeiro, G.M., Eliott, F., McIntyre, C.L., Casu, R.E. and Henry, R.J. (2006) Characterisation of single nucleotide polymorphisms in sugarcane ESTs. Theor. Appl. Genet. 113, 331-343.
-
(2006)
Theor. Appl. Genet.
, vol.113
, pp. 331-343
-
-
Cordeiro, G.M.1
Eliott, F.2
McIntyre, C.L.3
Casu, R.E.4
Henry, R.J.5
-
13
-
-
70349301773
-
Transitioning wheat research to serve the future needs of the developing world
-
(Dixon, J., Braun, H.J. and Kosina, P., eds) -. Mexico: CIMMYT.
-
Dixon, J., Braun, H.J. and Crouch, J. (2009) Transitioning wheat research to serve the future needs of the developing world. In: Wheat Facts and Futures (Dixon, J., Braun, H.J. and Kosina, P., eds), pp. 1-19. Mexico: CIMMYT.
-
(2009)
Wheat Facts and Futures
, pp. 1-19
-
-
Dixon, J.1
Braun, H.J.2
Crouch, J.3
-
14
-
-
34347399464
-
Genome plasticity a key factor in the success of polyploid wheat under domestication
-
Dubcovsky, J. and Dvorak, J. (2007) Genome plasticity a key factor in the success of polyploid wheat under domestication. Science, 316, 1862-1866.
-
(2007)
Science
, vol.316
, pp. 1862-1866
-
-
Dubcovsky, J.1
Dvorak, J.2
-
15
-
-
34547672834
-
Grinding up wheat: a massive loss of nucleotide diversity since domestication
-
Haudry, A., Cenci, A., Ravel, C., Bataillon, T., Brunel, D., Poncet, C., Hochu, I., Poirier, S., Santoni, S., Glémin, S. and David, J. (2007) Grinding up wheat: a massive loss of nucleotide diversity since domestication. Mol. Biol. Evol. 24, 1506-1517.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1506-1517
-
-
Haudry, A.1
Cenci, A.2
Ravel, C.3
Bataillon, T.4
Brunel, D.5
Poncet, C.6
Hochu, I.7
Poirier, S.8
Santoni, S.9
Glémin, S.10
David, J.11
-
16
-
-
79551699087
-
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82
-
Haun, W.J., Hyten, D.L., Xu, W.W., Gerhardt, D.J., Albert, T.J., Richmond, T., Jeddeloh, J.A., Jia, G., Springer, N.M., Vance, C.P. and Stupar, R.M. (2011) The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol. 155, 645-655.
-
(2011)
Plant Physiol.
, vol.155
, pp. 645-655
-
-
Haun, W.J.1
Hyten, D.L.2
Xu, W.W.3
Gerhardt, D.J.4
Albert, T.J.5
Richmond, T.6
Jeddeloh, J.A.7
Jia, G.8
Springer, N.M.9
Vance, C.P.10
Stupar, R.M.11
-
17
-
-
84855261534
-
Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species
-
Kaur, S., Francki, M.G. and Forster, J.W. (2012) Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species. Plant Biotechnol. J. 10, 125-138.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 125-138
-
-
Kaur, S.1
Francki, M.G.2
Forster, J.W.3
-
18
-
-
0000732266
-
The estimation of map distances from recombination values
-
Kosambi, D.D. (1944) The estimation of map distances from recombination values. Ann. Eugen. 12, 172-175.
-
(1944)
Ann. Eugen.
, vol.12
, pp. 172-175
-
-
Kosambi, D.D.1
-
19
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
20
-
-
18744382780
-
PowerMarker: an integrated analysis environment for genetic marker analysis
-
Liu, K. and Muse, S.V. (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128-2129.
-
(2005)
Bioinformatics
, vol.21
, pp. 2128-2129
-
-
Liu, K.1
Muse, S.V.2
-
21
-
-
70349294301
-
Rapid genomic changes in polyploid wheat and related species: implications for genome evolution and genetic improvement
-
Liu, B., Xu, C., Zhao, N., Qi, B., Kimatu, J.N., Pang, J. and Han, F. (2009) Rapid genomic changes in polyploid wheat and related species: implications for genome evolution and genetic improvement. J. Genet. Genomics, 36, 519-528.
-
(2009)
J. Genet. Genomics
, vol.36
, pp. 519-528
-
-
Liu, B.1
Xu, C.2
Zhao, N.3
Qi, B.4
Kimatu, J.N.5
Pang, J.6
Han, F.7
-
22
-
-
84865409707
-
MapDisto: fast and efficient computation of genetic linkage maps
-
Lorieux, M. (2012) MapDisto: fast and efficient computation of genetic linkage maps. Mol. Breeding, 30, 1231-1235.
-
(2012)
Mol. Breeding
, vol.30
, pp. 1231-1235
-
-
Lorieux, M.1
-
23
-
-
73949088815
-
Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat
-
Paux, E., Faure, S., Choulet, F., Roger, D., Gauthier, V., Martinant, J.P., Sourdille, P., Balfourier, F., Le Paslier, M.C., Chauveau, A., Cakir, M., Gandon, B. and Feuillet, C. (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol. J. 8, 196-210.
-
(2010)
Plant Biotechnol. J.
, vol.8
, pp. 196-210
-
-
Paux, E.1
Faure, S.2
Choulet, F.3
Roger, D.4
Gauthier, V.5
Martinant, J.P.6
Sourdille, P.7
Balfourier, F.8
Le Paslier, M.C.9
Chauveau, A.10
Cakir, M.11
Gandon, B.12
Feuillet, C.13
-
24
-
-
84866374321
-
Sequence-based marker development in wheat: advances and applications to breeding
-
Paux, E., Sourdille, P., Mackay, I. and Feuillet, C. (2011) Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol. Adv. http://dx.doi.org/10.1016/j.bbr.2011.03.031.
-
(2011)
Biotechnol. Adv.
-
-
Paux, E.1
Sourdille, P.2
Mackay, I.3
Feuillet, C.4
-
25
-
-
66249096014
-
Raising yield potential in wheat
-
Reynolds, M., Foulkes, M.J., Slafer, G.A., Berry, P., Parry, M.A.J., Snape, J.W. and Angus, W.J. (2009) Raising yield potential in wheat. J. Exp. Bot. 60, 1899-1918.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 1899-1918
-
-
Reynolds, M.1
Foulkes, M.J.2
Slafer, G.A.3
Berry, P.4
Parry, M.A.J.5
Snape, J.W.6
Angus, W.J.7
-
27
-
-
78549273825
-
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
-
Swanson-Wagner, R.A., Eichten, S.R., Kumari, S., Tiffin, P., Stein, J.C., Ware, D. and Springer, N.M. (2010) Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res. 20, 1689-1699.
-
(2010)
Genome Res.
, vol.20
, pp. 1689-1699
-
-
Swanson-Wagner, R.A.1
Eichten, S.R.2
Kumari, S.3
Tiffin, P.4
Stein, J.C.5
Ware, D.6
Springer, N.M.7
-
28
-
-
64749090107
-
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
-
Trick, M., Long, Y., Meng, J. and Bancroft, I. (2009) Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol. J. 7, 334-346.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 334-346
-
-
Trick, M.1
Long, Y.2
Meng, J.3
Bancroft, I.4
-
29
-
-
84856121095
-
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
-
Trick, M., Adamski, N., Mugford, S.G., Jiang, C., Febrer, M. and Uauy, C. (2012) Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat. BMC Plant Biol. 12, 1-14.
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 1-14
-
-
Trick, M.1
Adamski, N.2
Mugford, S.G.3
Jiang, C.4
Febrer, M.5
Uauy, C.6
-
30
-
-
0036256695
-
MapChart: software for the graphical presentation of linkage maps and QTLs
-
Voorrips, R.E. (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93, 77-78.
-
(2002)
J. Hered.
, vol.93
, pp. 77-78
-
-
Voorrips, R.E.1
-
31
-
-
84863604990
-
Targeted re-sequencing of the allohexaploid wheat exome
-
Winfield, M.O., Wilkinson, P.A., Allen, A.M., Barker, G.L.A., Coghill, J.A., Burridge, A., Hall, A., Brenchley, R.C., D'Amore, R., Hall, N., Bevan, M., Richmond, T., Gerhardt, D.J., Jeddeloh, J.A. and Edwards, K.J. (2012) Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnol. J. 10, 733-742.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 733-742
-
-
Winfield, M.O.1
Wilkinson, P.A.2
Allen, A.M.3
Barker, G.L.A.4
Coghill, J.A.5
Burridge, A.6
Hall, A.7
Brenchley, R.C.8
D'Amore, R.9
Hall, N.10
Bevan, M.11
Richmond, T.12
Gerhardt, D.J.13
Jeddeloh, J.A.14
Edwards, K.J.15
-
32
-
-
84865747346
-
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome
-
Yu, J.Z., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V. and Percy, R.G. (2012) A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes Genomes Genetics, 2, 43-58.
-
(2012)
Genes Genomes Genetics
, vol.2
, pp. 43-58
-
-
Yu, J.Z.1
Kohel, R.J.2
Fang, D.D.3
Cho, J.4
Van Deynze, A.5
Ulloa, M.6
Hoffman, S.M.7
Pepper, A.E.8
Stelly, D.M.9
Jenkins, J.N.10
Saha, S.11
Kumpatla, S.P.12
Shah, M.R.13
Hugie, W.V.14
Percy, R.G.15
|