메뉴 건너뛰기




Volumn 242, Issue 6, 2015, Pages 1335-1347

A high-density genetic map for P genome of Agropyron Gaertn. based on specific-locus amplified fragment sequencing (SLAF-seq)

Author keywords

Agropyron; Genetic map; High density; SLAF marker

Indexed keywords

AGROPYRON; GENETICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING; QUANTITATIVE TRAIT LOCUS;

EID: 84944355178     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-015-2372-7     Document Type: Article
Times cited : (42)

References (26)
  • 1
    • 84866184137 scopus 로고    scopus 로고
    • Inheritance and availability of high grain number per spike in two wheat germplasm lines
    • Chen D, Zhang J, Wang J, Yang X, Liu W, Gao A, Li X, Li L (2012) Inheritance and availability of high grain number per spike in two wheat germplasm lines. J Integr Agr 11:1409–1416
    • (2012) J Integr Agr , vol.11 , pp. 1409-1416
    • Chen, D.1    Zhang, J.2    Wang, J.3    Yang, X.4    Liu, W.5    Gao, A.6    Li, X.7    Li, L.8
  • 2
    • 84888090877 scopus 로고    scopus 로고
    • Genetic diversity and relationships among accessions of five crested wheatgrass species (Poaceae: Agropyron) based on gliadin analysis
    • COI: 1:STN:280:DC%2BC2c3jtFymtQ%3D%3D, PID: 24301939
    • Chen S, Ma X, Zhang X, Huang L, Zhou J (2013) Genetic diversity and relationships among accessions of five crested wheatgrass species (Poaceae: Agropyron) based on gliadin analysis. Genet Mol Res 12:5704
    • (2013) Genet Mol Res , vol.12 , pp. 5704
    • Chen, S.1    Ma, X.2    Zhang, X.3    Huang, L.4    Zhou, J.5
  • 3
    • 0001678358 scopus 로고
    • The genomic system of classification as a guide to intergeneric hybridization with the perennial Triticeae
    • Gustafson JP, (ed), Springer, US, New York
    • Dewey DR (1984) The genomic system of classification as a guide to intergeneric hybridization with the perennial Triticeae. In: Gustafson JP (ed) Gene manipulation in plant improvement, 16th Stadler Genetics Symposium. Springer, US, New York, pp 209–279
    • (1984) Gene manipulation in plant improvement, 16th Stadler Genetics Symposium , pp. 209-279
    • Dewey, D.R.1
  • 4
    • 0026641949 scopus 로고
    • Desirable characteristics in perennial Triticeae collected in China for wheat improvement
    • Dong Y, Zhou R, Xu S, Li L, Cauderon Y, Wang R (1992) Desirable characteristics in perennial Triticeae collected in China for wheat improvement. Hereditas 116:175–178
    • (1992) Hereditas , vol.116 , pp. 175-178
    • Dong, Y.1    Zhou, R.2    Xu, S.3    Li, L.4    Cauderon, Y.5    Wang, R.6
  • 6
    • 84897102534 scopus 로고    scopus 로고
    • Genetic rearrangements of six wheat–Agropyron cristatum 6P addition lines revealed by molecular markers
    • PID: 24595330
    • Han H, Bai L, Su J, Zhang J, Song L, Gao A, Yang X, Li X, Liu W, Li L (2014) Genetic rearrangements of six wheat–Agropyroncristatum 6P addition lines revealed by molecular markers. PLoS ONE 9:e91066
    • (2014) PLoS ONE , vol.9 , pp. e91066
    • Han, H.1    Bai, L.2    Su, J.3    Zhang, J.4    Song, L.5    Gao, A.6    Yang, X.7    Li, X.8    Liu, W.9    Li, L.10
  • 7
    • 84876720256 scopus 로고    scopus 로고
    • Construction of an integrated genetic map based on maternal and paternal lineages of tea (Camellia sinensis)
    • Hu C-Y, Lee T-C, Tsai H-T, Tsai Y-Z, Lin S-F (2013) Construction of an integrated genetic map based on maternal and paternal lineages of tea (Camellia sinensis). Euphytica 191:141–152
    • (2013) Euphytica , vol.191 , pp. 141-152
    • Hu, C.-Y.1    Lee, T.-C.2    Tsai, H.-T.3    Tsai, Y.-Z.4    Lin, S.-F.5
  • 8
    • 76749130701 scopus 로고    scopus 로고
    • Highthroughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    • Hyten D, Cannon S, Song Q, Weeks N, Fickus E, Shoemaker R, Specht J, Farmer A, May G, Cregan P (2010) Highthroughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genom 11:38
    • (2010) BMC Genom , vol.11 , pp. 38
    • Hyten, D.1    Cannon, S.2    Song, Q.3    Weeks, N.4    Fickus, E.5    Shoemaker, R.6    Specht, J.7    Farmer, A.8    May, G.9    Cregan, P.10
  • 9
    • 0036226603 scopus 로고    scopus 로고
    • BLAT—the BLAST-like alignment tool
    • COI: 1:CAS:528:DC%2BD38XivVemtLw%3D, PID: 11932250
    • Kent WJ (2002) BLAT—the BLAST-like alignment tool. Genome Res 12:656–664
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 10
    • 4644292296 scopus 로고    scopus 로고
    • Introduction of desirable genes from Agropyron cristatum into common wheat by intergeneric hybridization
    • COI: 1:CAS:528:DyaK1MXitFCmtrw%3D
    • Li L, Yang X, Li X, Dong Y, Chen X (1998) Introduction of desirable genes from Agropyron cristatum into common wheat by intergeneric hybridization. Sci Agric Sinica 31:1–6
    • (1998) Sci Agric Sinica , vol.31 , pp. 1-6
    • Li, L.1    Yang, X.2    Li, X.3    Dong, Y.4    Chen, X.5
  • 11
    • 77953936123 scopus 로고    scopus 로고
    • Production and identification of wheat- Agropyron cristatum (1.4P) alien translocation lines
    • COI: 1:CAS:528:DC%2BC3cXnsFKjtrc%3D, PID: 20555436
    • Liu W, Luan Y, Wang J, Wang X, Su J, Zhang J, Yang X, Gao A, Li L (2010) Production and identification of wheat-Agropyron cristatum (1.4P) alien translocation lines. Genome 53:472–481
    • (2010) Genome , vol.53 , pp. 472-481
    • Liu, W.1    Luan, Y.2    Wang, J.3    Wang, X.4    Su, J.5    Zhang, J.6    Yang, X.7    Gao, A.8    Li, L.9
  • 12
    • 84902590946 scopus 로고    scopus 로고
    • Construction and analysis of high-density linkage map using high-throughput sequencing data
    • PID: 24905985
    • Liu D, Ma C, Hong W, Huang L, Liu M, Liu H, Zeng H, Deng D, Xin H, Song J (2014) Construction and analysis of high-density linkage map using high-throughput sequencing data. PLoS ONE 9:e98855
    • (2014) PLoS ONE , vol.9 , pp. e98855
    • Liu, D.1    Ma, C.2    Hong, W.3    Huang, L.4    Liu, M.5    Liu, H.6    Zeng, H.7    Deng, D.8    Xin, H.9    Song, J.10
  • 13
    • 77953686687 scopus 로고    scopus 로고
    • Production and identification of wheat- Agropyron cristatum 6P translocation lines
    • COI: 1:CAS:528:DC%2BC3cXnsFGru7s%3D, PID: 20490543
    • Luan Y, Wang X, Liu W, Li C, Zhang J, Gao A, Wang Y, Yang X, Li L (2010) Production and identification of wheat-Agropyron cristatum 6P translocation lines. Planta 232:501–510
    • (2010) Planta , vol.232 , pp. 501-510
    • Luan, Y.1    Wang, X.2    Liu, W.3    Li, C.4    Zhang, J.5    Gao, A.6    Wang, Y.7    Yang, X.8    Li, L.9
  • 14
    • 84914671543 scopus 로고    scopus 로고
    • Molecular and cytogenetic characterization of a common wheat- Agropyron cristatum chromosome translocation conferring resistance to leaf rust
    • Ochoa V, Madrid E, Said M, Rubiales D, Cabrera A (2015) Molecular and cytogenetic characterization of a common wheat-Agropyron cristatum chromosome translocation conferring resistance to leaf rust. Euphytica 201:89–95
    • (2015) Euphytica , vol.201 , pp. 89-95
    • Ochoa, V.1    Madrid, E.2    Said, M.3    Rubiales, D.4    Cabrera, A.5
  • 15
    • 79959297013 scopus 로고    scopus 로고
    • Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
    • COI: 1:STN:280:DC%2BC3MvmtVWmug%3D%3D, PID: 21344184
    • Pfender W, Saha M, Johnson E, Slabaugh M (2011) Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor Appl Genet 122:1467–1480
    • (2011) Theor Appl Genet , vol.122 , pp. 1467-1480
    • Pfender, W.1    Saha, M.2    Johnson, E.3    Slabaugh, M.4
  • 16
    • 0031526548 scopus 로고    scopus 로고
    • Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
    • COI: 1:CAS:528:DyaK2sXivVejsbs%3D
    • Porebski S, Bailey LG, Baum BR (1997) Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep 15:8–15
    • (1997) Plant Mol Biol Rep , vol.15 , pp. 8-15
    • Porebski, S.1    Bailey, L.G.2    Baum, B.R.3
  • 17
    • 84912526965 scopus 로고    scopus 로고
    • A high-density genetic map for soybean based on specific length amplified fragment sequencing
    • PID: 25118194
    • Qi Z, Huang L, Zhu R, Xin D, Liu C, Han X, Jiang H, Hong W, Hu G, Zheng H (2014) A high-density genetic map for soybean based on specific length amplified fragment sequencing. PLoS ONE 9:e104871
    • (2014) PLoS ONE , vol.9 , pp. e104871
    • Qi, Z.1    Huang, L.2    Zhu, R.3    Xin, D.4    Liu, C.5    Han, X.6    Jiang, H.7    Hong, W.8    Hu, G.9    Zheng, H.10
  • 18
    • 84879766022 scopus 로고    scopus 로고
    • Efficient induction of wheat- Agropyron cristatum 6P translocation lines and GISH detection
    • COI: 1:CAS:528:DC%2BC3sXhtFGjsbjO, PID: 23874966
    • Song L, Jiang L, Han H, Gao A, Yang X, Li L, Liu W (2013) Efficient induction of wheat-Agropyron cristatum 6P translocation lines and GISH detection. PLoS ONE 8:e69501
    • (2013) PLoS ONE , vol.8 , pp. e69501
    • Song, L.1    Jiang, L.2    Han, H.3    Gao, A.4    Yang, X.5    Li, L.6    Liu, W.7
  • 19
    • 7344254829 scopus 로고
    • Construction of integrated genetic linkage maps by means of a new computer package: Join Map
    • COI: 1:CAS:528:DyaK3sXlvFKktLc%3D
    • Stam P (1993) Construction of integrated genetic linkage maps by means of a new computer package: Join Map. Plant J 3:739–744
    • (1993) Plant J , vol.3 , pp. 739-744
    • Stam, P.1
  • 20
    • 84875117473 scopus 로고    scopus 로고
    • SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing
    • COI: 1:CAS:528:DC%2BC3sXltFSktbg%3D, PID: 23527008
    • Sun X, Liu D, Zhang X, Li W, Liu H, Hong W, Jiang C, Guan N, Ma C, Zeng H (2013) SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing. PLoS ONE 8:e58700
    • (2013) PLoS ONE , vol.8 , pp. e58700
    • Sun, X.1    Liu, D.2    Zhang, X.3    Li, W.4    Liu, H.5    Hong, W.6    Jiang, C.7    Guan, N.8    Ma, C.9    Zeng, H.10
  • 21
    • 84871572868 scopus 로고    scopus 로고
    • Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing
    • COI: 1:CAS:528:DC%2BC3sXhtlGit7c%3D, PID: 22908993
    • Wang N, Fang L, Xin H, Wang L, Li S (2012) Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing. BMC Plant Biol 12:148
    • (2012) BMC Plant Biol , vol.12 , pp. 148
    • Wang, N.1    Fang, L.2    Xin, H.3    Wang, L.4    Li, S.5
  • 22
    • 33751218302 scopus 로고    scopus 로고
    • The introgression of chromosome 6P specifying for increased numbers of florets and kernels from Agropyron cristatum into wheat
    • COI: 1:CAS:528:DC%2BD28Xht1WltrnN, PID: 17031609
    • Wu J, Yang X, Wang H, Li H, Li L, Li X, Liu W (2006) The introgression of chromosome 6P specifying for increased numbers of florets and kernels from Agropyron cristatum into wheat. Theor Appl Genet 114:13–20
    • (2006) Theor Appl Genet , vol.114 , pp. 13-20
    • Wu, J.1    Yang, X.2    Wang, H.3    Li, H.4    Li, L.5    Li, X.6    Liu, W.7
  • 23
    • 77954029915 scopus 로고    scopus 로고
    • Cloning and characterization of repetitive sequences and development of SCAR markers specific for the P genome of Agropyron cristatum
    • COI: 1:CAS:528:DC%2BC3cXivVGqtL4%3D
    • Wu M, Zhang J, Wang J, Yang X, Gao A, Zhang X, Liu W, Li L (2010) Cloning and characterization of repetitive sequences and development of SCAR markers specific for the P genome of Agropyron cristatum. Euphytica 172:363–372
    • (2010) Euphytica , vol.172 , pp. 363-372
    • Wu, M.1    Zhang, J.2    Wang, J.3    Yang, X.4    Gao, A.5    Zhang, X.6    Liu, W.7    Li, L.8
  • 24
    • 84859388199 scopus 로고    scopus 로고
    • A genetic linkage map of crested wheatgrass based on AFLP and RAPD markers
    • COI: 1:CAS:528:DC%2BC38Xoslehsrs%3D
    • Yu X, Li X, Ma Y, Yu Z, Li Z, Gulick P (2012) A genetic linkage map of crested wheatgrass based on AFLP and RAPD markers. Genome 55:327–335
    • (2012) Genome , vol.55 , pp. 327-335
    • Yu, X.1    Li, X.2    Ma, Y.3    Yu, Z.4    Li, Z.5    Gulick, P.6
  • 25
    • 84877798670 scopus 로고    scopus 로고
    • Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing
    • PID: 24060091
    • Zhang Y, Wang L, Xin H, Li D, Ma C, Ding X, Hong W, Zhang X (2013) Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing. BMC Plant Biol 13:141
    • (2013) BMC Plant Biol , vol.13 , pp. 141
    • Zhang, Y.1    Wang, L.2    Xin, H.3    Li, D.4    Ma, C.5    Ding, X.6    Hong, W.7    Zhang, X.8
  • 26
    • 84939468428 scopus 로고    scopus 로고
    • De novo transcriptome sequencing of Agropyron cristatum to identify available gene resources for the enhancement of wheat
    • Zhang J, Liu W, Han H, Song L, Bai L, Gao Z, Zhang Y, Yang X, Li X, Gao A, Li L (2015) De novo transcriptome sequencing of Agropyron cristatum to identify available gene resources for the enhancement of wheat. Genomics. doi:10.1016/j.ygeno.2015.04.003
    • (2015) Genomics
    • Zhang, J.1    Liu, W.2    Han, H.3    Song, L.4    Bai, L.5    Gao, Z.6    Zhang, Y.7    Yang, X.8    Li, X.9    Gao, A.10    Li, L.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.