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Volumn 86, Issue , 2017, Pages 515-539

Engineering and in vivo applications of riboswitches

Author keywords

Aptamer; Biosensor; Metabolite sensing; Riboswitch; RNA

Indexed keywords

APTAMER; CYCLIC NUCLEOTIDE; FLAVINE MONONUCLEOTIDE; PURINE; TRANSFER RNA; LIGAND; RIBOSWITCH;

EID: 85021690473     PISSN: 00664154     EISSN: 15454509     Source Type: Book Series    
DOI: 10.1146/annurev-biochem-060815-014628     Document Type: Review
Times cited : (110)

References (147)
  • 1
    • 84877766936 scopus 로고    scopus 로고
    • Molecular mechanisms of RNA interference
    • Wilson RC, Doudna JA. (2013). Molecular mechanisms of RNA interference. Annu. Rev. Biophys. 42: 217-39
    • (2013) Annu. Rev. Biophys , vol.42 , pp. 217-239
    • Wilson, R.C.1    Doudna, J.A.2
  • 2
    • 84954214717 scopus 로고    scopus 로고
    • Biology and applications of CRISPR systems: Harnessing natures toolbox for genome engineering
    • Wright AV, Nũnez JK, Doudna JA. (2016). Biology and applications of CRISPR systems: harnessing natures toolbox for genome engineering. Cell 164: 29-44
    • (2016) Cell , vol.164 , pp. 29-44
    • Wright, A.V.1    Nũnez, J.K.2    Doudna, J.A.3
  • 3
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • Serganov A, Nudler E. (2013). A decade of riboswitches. Cell 152: 17-24
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 4
    • 40849147457 scopus 로고    scopus 로고
    • Riboswitches that sense S-Adenosylhomocysteine and activate genes involved in coenzyme recycling
    • Wang JX, Lee ER, Morales DR, Lim J, Breaker RR. (2008). Riboswitches that sense S-Adenosylhomocysteine and activate genes involved in coenzyme recycling. Mol. Cell 29: 691-702
    • (2008) Mol. Cell , vol.29 , pp. 691-702
    • Wang, J.X.1    Lee, E.R.2    Morales, D.R.3    Lim, J.4    Breaker, R.R.5
  • 5
    • 0038210214 scopus 로고    scopus 로고
    • Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR. (2003). Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113: 577-86
    • (2003) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 6
    • 0842334528 scopus 로고    scopus 로고
    • Adenine riboswitches and gene activation by disruption of a transcription terminator
    • Mandal M, Breaker RR. (2004). Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat. Struct. Mol. Biol. 11: 29-35
    • (2004) Nat. Struct. Mol. Biol , vol.11 , pp. 29-35
    • Mandal, M.1    Breaker, R.R.2
  • 7
    • 9244225713 scopus 로고    scopus 로고
    • Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
    • Batey RT, Gilbert SD, Montange RK. (2004). Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432: 411-15
    • (2004) Nature , vol.432 , pp. 411-415
    • Batey, R.T.1    Gilbert, S.D.2    Montange, R.K.3
  • 8
    • 10644250950 scopus 로고    scopus 로고
    • Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
    • Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, et al. (2004). Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. 11: 1729-41
    • (2004) Chem. Biol , vol.11 , pp. 1729-1741
    • Serganov, A.1    Yuan, Y.R.2    Pikovskaya, O.3    Polonskaia, A.4    Malinina, L.5
  • 9
    • 13444271576 scopus 로고    scopus 로고
    • An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs
    • Noeske J, Richter C, Grundl MA, Nasiri HR, Schwalbe H, Wöhnert J. (2005). An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs. PNAS 102: 1372-77
    • (2005) PNAS , vol.102 , pp. 1372-1377
    • Noeske, J.1    Richter, C.2    Grundl, M.A.3    Nasiri, H.R.4    Schwalbe, H.5    Wöhnert, J.6
  • 10
    • 33646768226 scopus 로고    scopus 로고
    • Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
    • Gilbert SD, Stoddard CD, Wise SJ, Batey RT. (2006). Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. J. Mol. Biol. 359: 754-68
    • (2006) J. Mol. Biol , vol.359 , pp. 754-768
    • Gilbert, S.D.1    Stoddard, C.D.2    Wise, S.J.3    Batey, R.T.4
  • 11
    • 36248982074 scopus 로고    scopus 로고
    • Mutational analysis of the purine riboswitch aptamer domain
    • Gilbert SD, Love CE, Edwards AL, Batey RT. (2007). Mutational analysis of the purine riboswitch aptamer domain. Biochemistry 46: 13297-309
    • (2007) Biochemistry , vol.46 , pp. 13297-13309
    • Gilbert, S.D.1    Love, C.E.2    Edwards, A.L.3    Batey, R.T.4
  • 12
    • 79960991166 scopus 로고    scopus 로고
    • Constitutive regulatory activity of an evolutionarily excluded riboswitch variant
    • Tremblay R, Lemay JF, Blouin S, Mulhbacher J, Bonneau É , et al. (2011). Constitutive regulatory activity of an evolutionarily excluded riboswitch variant. J. Biol. Chem. 286: 27406-15
    • (2011) J. Biol. Chem , vol.286 , pp. 27406-27415
    • Tremblay, R.1    Lemay, J.F.2    Blouin, S.3    Mulhbacher, J.4    Bonneau, É.5
  • 13
    • 36048942754 scopus 로고    scopus 로고
    • Guanine riboswitch variants from Mesoplasma florum selectively recognize 2-deoxyguanosine
    • Kim JN, Roth A, Breaker RR. (2007). Guanine riboswitch variants from Mesoplasma florum selectively recognize 2-deoxyguanosine. PNAS 104: 16092-97
    • (2007) PNAS , vol.104 , pp. 16092-16097
    • Kim, J.N.1    Roth, A.2    Breaker, R.R.3
  • 14
    • 58149138753 scopus 로고    scopus 로고
    • A structural basis for the recognition of 2-deoxyguanosine by the purine riboswitch
    • Edwards AL, Batey RT. (2009). A structural basis for the recognition of 2-deoxyguanosine by the purine riboswitch. J. Mol. Biol. 385: 938-48
    • (2009) J. Mol. Biol , vol.385 , pp. 938-948
    • Edwards, A.L.1    Batey, R.T.2
  • 15
    • 80052967464 scopus 로고    scopus 로고
    • Structural principles of nucleoside selectivity in a 2-deoxyguanosine riboswitch
    • Pikovskaya O, Polonskaia A, Patel DJ, Serganov A. (2011). Structural principles of nucleoside selectivity in a 2-deoxyguanosine riboswitch. Nat. Chem. Biol. 7: 748-55
    • (2011) Nat. Chem. Biol , vol.7 , pp. 748-755
    • Pikovskaya, O.1    Polonskaia, A.2    Patel, D.J.3    Serganov, A.4
  • 16
    • 33750712046 scopus 로고    scopus 로고
    • Modified pyrimidines specifically bind the purine riboswitch
    • Gilbert SD, Mediatore SJ, Batey RT. (2006). Modified pyrimidines specifically bind the purine riboswitch. J. Am. Chem. Soc. 128: 14214-15
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 14214-14215
    • Gilbert, S.D.1    Mediatore, S.J.2    Batey, R.T.3
  • 17
    • 66349133602 scopus 로고    scopus 로고
    • Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs
    • Gilbert SD, Reyes FE, Edwards AL, Batey RT. (2009). Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs. Structure 17: 857-68
    • (2009) Structure , vol.17 , pp. 857-868
    • Gilbert, S.D.1    Reyes, F.E.2    Edwards, A.L.3    Batey, R.T.4
  • 19
    • 84934434885 scopus 로고    scopus 로고
    • Generation of orthogonally selective bacterial riboswitches by targeted mutagenesis and in vivo screening
    • Vincent HA, Robinson CJ, WuM-C, Dixon N, Micklefield J. (2014). Generation of orthogonally selective bacterial riboswitches by targeted mutagenesis and in vivo screening. Methods Mol. Biol. 1111: 107-29
    • (2014) Methods Mol. Biol , vol.1111 , pp. 107-129
    • Vincent, H.A.1    Robinson, C.J.2    WuM-C Dixon, N.3    Micklefield, J.4
  • 21
    • 84905229942 scopus 로고    scopus 로고
    • Modular riboswitch toolsets for synthetic genetic control in diverse bacterial species
    • Robinson CJ, Vincent HA, Wu MC, Lowe PT, Dunstan MS, et al. (2014). Modular riboswitch toolsets for synthetic genetic control in diverse bacterial species. J. Am. Chem. Soc. 136: 10615-24
    • (2014) J. Am. Chem. Soc , vol.136 , pp. 10615-10624
    • Robinson, C.J.1    Vincent, H.A.2    Wu, M.C.3    Lowe, P.T.4    Dunstan, M.S.5
  • 22
    • 34247181095 scopus 로고    scopus 로고
    • A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
    • Roth A, Winkler WC, Regulski EE, Lee BWK, Lim J, et al. 2007.A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nat. Struct. Mol. Biol. 14: 308-17
    • (2007) Nat. Struct. Mol. Biol , vol.14 , pp. 308-317
    • Roth, A.1    Winkler, W.C.2    Regulski, E.E.3    Lee, B.W.K.4    Lim, J.5
  • 23
    • 41649108068 scopus 로고    scopus 로고
    • Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria
    • Meyer MM, Roth A, Chervin SM, Garcia GA, Breaker RR. (2008). Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. RNA 14: 685-95
    • (2008) RNA , vol.14 , pp. 685-695
    • Meyer, M.M.1    Roth, A.2    Chervin, S.M.3    Garcia, G.A.4    Breaker, R.R.5
  • 24
    • 84904555761 scopus 로고    scopus 로고
    • Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes
    • McCown PJ, Liang JJ, Weinberg Z, Breaker RR. (2014). Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes. Chem. Biol. 21: 880-89
    • (2014) Chem. Biol , vol.21 , pp. 880-889
    • McCown, P.J.1    Liang, J.J.2    Weinberg, Z.3    Breaker, R.R.4
  • 25
    • 62549154008 scopus 로고    scopus 로고
    • Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA
    • Kang M, Peterson R, Feigon J. (2009). Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA. Mol. Cell 33: 784-90
    • (2009) Mol. Cell , vol.33 , pp. 784-790
    • Kang, M.1    Peterson, R.2    Feigon, J.3
  • 26
    • 62049086072 scopus 로고    scopus 로고
    • Cocrystal structure of a class i preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase
    • Klein DJ, Edwards TE, Ferre-DAmare AR. (2009). Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nat. Struct. Mol. Biol. 16: 343-44
    • (2009) Nat. Struct. Mol. Biol , vol.16 , pp. 343-344
    • Klein, D.J.1    Edwards, T.E.2    Ferre-D'Amare, A.R.3
  • 27
    • 84937683269 scopus 로고    scopus 로고
    • Rational re-engineering of a transcriptional silencing PreQ1 riboswitch
    • Wu M-C, Lowe PT, Robinson CJ, Vincent HA, Dixon N, et al. (2015). Rational re-engineering of a transcriptional silencing PreQ1 riboswitch. J. Am. Chem. Soc. 137: 9015-21
    • (2015) J. Am. Chem. Soc , vol.137 , pp. 9015-9021
    • Wu, M.-C.1    Lowe, P.T.2    Robinson, C.J.3    Vincent, H.A.4    Dixon, N.5
  • 29
    • 0037058920 scopus 로고    scopus 로고
    • AnmRNAstructure that controls gene expression by binding FMN
    • Winkler WC, Cohen-Chalamish S, Breaker RR. (2002). AnmRNAstructure that controls gene expression by binding FMN. PNAS 99: 15908-13
    • (2002) PNAS , vol.99 , pp. 15908-15913
    • Winkler, W.C.1    Cohen-Chalamish, S.2    Breaker, R.R.3
  • 30
    • 62249156218 scopus 로고    scopus 로고
    • Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch
    • Serganov A, Huang L, Patel DJ. (2009). Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch. Nature 458: 233-37
    • (2009) Nature , vol.458 , pp. 233-237
    • Serganov, A.1    Huang, L.2    Patel, D.J.3
  • 31
    • 85011936077 scopus 로고    scopus 로고
    • Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression
    • Lee ER, Blount KF, Breaker RR. (2009). Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression. RNA Biol. 6: 187-94
    • (2009) RNA Biol , vol.6 , pp. 187-194
    • Lee, E.R.1    Blount, K.F.2    Breaker, R.R.3
  • 32
    • 67650474303 scopus 로고    scopus 로고
    • The RFN riboswitch of Bacillus subtilis is a target for the antibiotic roseoflavin produced by Streptomyces davawensis
    • Ott E, Stolz J, Lehmann M, Mack M. (2009). The RFN riboswitch of Bacillus subtilis is a target for the antibiotic roseoflavin produced by Streptomyces davawensis. RNA Biol. 6: 276-80
    • (2009) RNA Biol , vol.6 , pp. 276-280
    • Ott, E.1    Stolz, J.2    Lehmann, M.3    Mack, M.4
  • 33
    • 79960081500 scopus 로고    scopus 로고
    • The riboflavin analog roseoflavin targets an FMN-riboswitch and blocks Listeria monocytogenes growth, but also stimulates virulence gene-expression and infection
    • Mansjö M, Johansson J. (2011). The riboflavin analog roseoflavin targets an FMN-riboswitch and blocks Listeria monocytogenes growth, but also stimulates virulence gene-expression and infection. RNA Biol. 8: 674-80
    • (2011) RNA Biol , vol.8 , pp. 674-680
    • Mansjö, M.1    Johansson, J.2
  • 34
    • 84866891749 scopus 로고    scopus 로고
    • A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis
    • Pedrolli DB, Matern A, Wang J, Ester M, Siedler K, et al. (2012). A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis. Nucleic Acids Res. 40: 8662-73
    • (2012) Nucleic Acids Res , vol.40 , pp. 8662-8673
    • Pedrolli, D.B.1    Matern, A.2    Wang, J.3    Ester, M.4    Siedler, K.5
  • 35
    • 15944382675 scopus 로고    scopus 로고
    • The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
    • Wickiser JK, Winkler WC, Breaker RR, Crothers DM. (2005). The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 18: 49-60
    • (2005) Mol. Cell , vol.18 , pp. 49-60
    • Wickiser, J.K.1    Winkler, W.C.2    Breaker, R.R.3    Crothers, D.M.4
  • 36
    • 84920816915 scopus 로고    scopus 로고
    • Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties
    • Rode AB, Endoh T, Sugimoto N. (2015). Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties. Angew. Chem. Int. Ed. Engl. 54: 905-9
    • (2015) Angew. Chem. Int. Ed. Engl , vol.54 , pp. 905-909
    • Rode, A.B.1    Endoh, T.2    Sugimoto, N.3
  • 37
    • 34547873145 scopus 로고    scopus 로고
    • Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
    • Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, et al. (2007). Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res. 35: 4809-19
    • (2007) Nucleic Acids Res , vol.35 , pp. 4809-4819
    • Weinberg, Z.1    Barrick, J.E.2    Yao, Z.3    Roth, A.4    Kim, J.N.5
  • 38
    • 47749152941 scopus 로고    scopus 로고
    • Riboswitches in eubacteria sense the second messenger cyclic di-GMP
    • Sudarsan N, Lee ER, Weinberg Z, Moy RH, Kim JN, et al. (2008). Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321: 411-13
    • (2008) Science , vol.321 , pp. 411-413
    • Sudarsan, N.1    Lee, E.R.2    Weinberg, Z.3    Moy, R.H.4    Kim, J.N.5
  • 39
    • 71449123530 scopus 로고    scopus 로고
    • Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
    • Kulshina N, Baird NJ, Ferre-DAmare AR. (2009). Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat. Struct. Mol. Biol. 16: 1212-17
    • (2009) Nat. Struct. Mol. Biol , vol.16 , pp. 1212-1217
    • Kulshina, N.1    Baird, N.J.2    Ferre-D'Amare, A.R.3
  • 41
    • 80053311154 scopus 로고    scopus 로고
    • Differential analogue binding by two classes of c-di-GMP riboswitches
    • Shanahan CA, Gaffney BL, Jones RA, Strobel SA. (2011). Differential analogue binding by two classes of c-di-GMP riboswitches. J. Am. Chem. Soc. 133: 15578-92
    • (2011) J. Am. Chem. Soc , vol.133 , pp. 15578-15592
    • Shanahan, C.A.1    Gaffney, B.L.2    Jones, R.A.3    Strobel, S.A.4
  • 42
    • 84875784381 scopus 로고    scopus 로고
    • RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP
    • Kellenberger CA, Wilson SC, Sales-Lee J, Hammond MC. (2013). RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. J. Am. Chem. Soc. 135: 4906-9
    • (2013) J. Am. Chem. Soc , vol.135 , pp. 4906-4909
    • Kellenberger, C.A.1    Wilson, S.C.2    Sales-Lee, J.3    Hammond, M.C.4
  • 44
    • 84928570713 scopus 로고    scopus 로고
    • GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP
    • Kellenberger CA, Wilson SC, Hickey SF, Gonzalez TL, Su Y, et al. (2015). GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP. PNAS 112: 5383-88
    • (2015) PNAS , vol.112 , pp. 5383-5388
    • Kellenberger, C.A.1    Wilson, S.C.2    Hickey, S.F.3    Gonzalez, T.L.4    Su, Y.5
  • 46
    • 84927695413 scopus 로고    scopus 로고
    • Structural basis for molecular discrimination by a 3, 3-cGAMP sensing riboswitch
    • Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, et al. (2015). Structural basis for molecular discrimination by a 3, 3-cGAMP sensing riboswitch. Cell Rep. 11: 1-12
    • (2015) Cell Rep , vol.11 , pp. 1-12
    • Ren, A.1    Wang, X.C.2    Kellenberger, C.A.3    Rajashankar, K.R.4    Jones, R.A.5
  • 47
    • 77955630859 scopus 로고    scopus 로고
    • An allosteric self-splicing ribozyme triggered by a bacterial second messenger
    • Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR. (2010). An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 329: 845-48
    • (2010) Science , vol.329 , pp. 845-848
    • Lee, E.R.1    Baker, J.L.2    Weinberg, Z.3    Sudarsan, N.4    Breaker, R.R.5
  • 48
    • 79956338019 scopus 로고    scopus 로고
    • Structural basis of differential ligand recognition by two classes of bis-(3-5)-cyclic dimeric guanosine monophosphate-binding riboswitches
    • Smith KD, Shanahan CA, Moore EL, Simon AC, Strobel SA. (2011). Structural basis of differential ligand recognition by two classes of bis-(3-5)-cyclic dimeric guanosine monophosphate-binding riboswitches. PNAS 108: 7757-62
    • (2011) PNAS , vol.108 , pp. 7757-7762
    • Smith, K.D.1    Shanahan, C.A.2    Moore, E.L.3    Simon, A.C.4    Strobel, S.A.5
  • 49
    • 85006952437 scopus 로고    scopus 로고
    • An RNA-based fluorescent biosensor for high-Throughput analysis of the cGAS-cGAMP-STING pathway
    • Bose D, Su Y, Marcus A, Raulet DH, Hammond MC. (2016). An RNA-based fluorescent biosensor for high-Throughput analysis of the cGAS-cGAMP-STING pathway. Cell Chem. Biol. 23: 1539-49
    • (2016) Cell Chem. Biol , vol.23 , pp. 1539-1549
    • Bose, D.1    Su, Y.2    Marcus, A.3    Raulet, D.H.4    Hammond, M.C.5
  • 50
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • Winkler W, Nahvi A, Breaker RR. (2002). Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419: 952-56
    • (2002) Nature , vol.419 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 51
    • 84859475820 scopus 로고    scopus 로고
    • Riboswitch control of Rhodependent transcription termination
    • Hollands K, Proshkin S, Sklyarova S, Epshtein V, Mironov A, et al. (2012). Riboswitch control of Rhodependent transcription termination. PNAS 109: 5376-81
    • (2012) PNAS , vol.109 , pp. 5376-5381
    • Hollands, K.1    Proshkin, S.2    Sklyarova, S.3    Epshtein, V.4    Mironov, A.5
  • 52
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR. (2004). Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428: 281-86
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 53
    • 34249278470 scopus 로고    scopus 로고
    • Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
    • Cheah MT, Wachter A, Sudarsan N, Breaker RR. (2007). Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature 447: 497-500
    • (2007) Nature , vol.447 , pp. 497-500
    • Cheah, M.T.1    Wachter, A.2    Sudarsan, N.3    Breaker, R.R.4
  • 54
    • 38049169167 scopus 로고    scopus 로고
    • Thiamine biosynthesis in algae is regulated by riboswitches
    • Croft MT, Moulin M, Webb ME, Smith AG. (2007). Thiamine biosynthesis in algae is regulated by riboswitches. PNAS 104: 20770-75
    • (2007) PNAS , vol.104 , pp. 20770-20775
    • Croft, M.T.1    Moulin, M.2    Webb, M.E.3    Smith, A.G.4
  • 55
    • 36248989143 scopus 로고    scopus 로고
    • Riboswitch-dependent gene regulation and its evolution in the plant kingdom
    • Bocobza S, Adato A, Mandel T, Shapira M, Nudler E, Aharoni A. (2007). Riboswitch-dependent gene regulation and its evolution in the plant kingdom. Genes Dev. 21: 2874-79
    • (2007) Genes Dev , vol.21 , pp. 2874-2879
    • Bocobza, S.1    Adato, A.2    Mandel, T.3    Shapira, M.4    Nudler, E.5    Aharoni, A.6
  • 56
    • 37849045636 scopus 로고    scopus 로고
    • Riboswitch control of gene expression in plants by splicing and alternative 3 end processing of mRNAs
    • Wachter A, Tunc-Ozdemir M, Grove BC, Green PJ, Shintani DK, Breaker RR. (2007). Riboswitch control of gene expression in plants by splicing and alternative 3 end processing of mRNAs. Plant Cell 19: 3437-50
    • (2007) Plant Cell , vol.19 , pp. 3437-3450
    • Wachter, A.1    Tunc-Ozdemir, M.2    Grove, B.C.3    Green, P.J.4    Shintani, D.K.5    Breaker, R.R.6
  • 57
    • 33646193306 scopus 로고    scopus 로고
    • Control of mammalian translation by mRNA structure near caps
    • Babendure JR, Babendure JL, Ding J, Tsien RY. (2006). Control of mammalian translation by mRNA structure near caps. RNA 12: 851-61
    • (2006) RNA , vol.12 , pp. 851-861
    • Babendure, J.R.1    Babendure, J.L.2    Ding, J.3    Tsien, R.Y.4
  • 58
    • 77952330657 scopus 로고    scopus 로고
    • A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression
    • Auslander S, Ketzer P, Hartig JS. (2010). A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression. Mol. Biosyst. 6: 807-14
    • (2010) Mol. Biosyst , vol.6 , pp. 807-814
    • Auslander, S.1    Ketzer, P.2    Hartig, J.S.3
  • 59
    • 35448990907 scopus 로고    scopus 로고
    • A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
    • Win MN, Smolke CD. (2007). A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. PNAS 104: 14283-88
    • (2007) PNAS , vol.104 , pp. 14283-14288
    • Win, M.N.1    Smolke, C.D.2
  • 60
    • 70349631634 scopus 로고    scopus 로고
    • Conditional RNA interference mediated by allosteric ribozyme
    • Kumar D, An CI, Yokobayashi Y. (2009). Conditional RNA interference mediated by allosteric ribozyme. J. Am. Chem. Soc. 131: 13906-7
    • (2009) J. Am. Chem. Soc , vol.131 , pp. 13906-13907
    • Kumar, D.1    An, C.I.2    Yokobayashi, Y.3
  • 61
    • 79954610188 scopus 로고    scopus 로고
    • Design of small molecule-responsive microRNAs based on structural requirements for Drosha processing
    • Beisel CL, Chen YY, Culler SJ, Hoff KG, Smolke CD. (2011). Design of small molecule-responsive microRNAs based on structural requirements for Drosha processing. Nucleic Acids Res. 39: 2981-94
    • (2011) Nucleic Acids Res , vol.39 , pp. 2981-2994
    • Beisel, C.L.1    Chen, Y.Y.2    Culler, S.J.3    Hoff, K.G.4    Smolke, C.D.5
  • 64
    • 84882622399 scopus 로고    scopus 로고
    • Modularity of select riboswitch expression platform enables facile engineering of novel genetic regulatory devices
    • Ceres P, Garst AD, Marcano-Velázquez JG, Batey RT. (2013). Modularity of select riboswitch expression platform enables facile engineering of novel genetic regulatory devices. ACS Synth. Biol. 2: 463-72
    • (2013) ACS Synth. Biol , vol.2 , pp. 463-472
    • Ceres, P.1    Garst, A.D.2    Marcano-Velázquez, J.G.3    Batey, R.T.4
  • 65
    • 84907020062 scopus 로고    scopus 로고
    • Engineering of Bacillus subtilis strains to allow rapid characterization of heterologous diguanylate cyclases and phosphodiesterases
    • Gao X, Dong X, Subramanian S, Matthews PM, Cooper CA, et al. (2014). Engineering of Bacillus subtilis strains to allow rapid characterization of heterologous diguanylate cyclases and phosphodiesterases. Appl. Environ. Microbiol. 80: 6167-74
    • (2014) Appl. Environ. Microbiol , vol.80 , pp. 6167-6174
    • Gao, X.1    Dong, X.2    Subramanian, S.3    Matthews, P.M.4    Cooper, C.A.5
  • 66
    • 84890327325 scopus 로고    scopus 로고
    • Engineering modular on RNA switches using biological components
    • Ceres P, Trausch JJ, Batey RT. (2013). Engineering modular ON RNA switches using biological components. Nucleic Acids Res. 41: 10449-61
    • (2013) Nucleic Acids Res , vol.41 , pp. 10449-10461
    • Ceres, P.1    Trausch, J.J.2    Batey, R.T.3
  • 67
    • 2542601538 scopus 로고    scopus 로고
    • A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
    • Suess B, Fink B, Berens C, Stentz R, Hillen W. (2004). A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res. 32: 1610-14
    • (2004) Nucleic Acids Res , vol.32 , pp. 1610-1614
    • Suess, B.1    Fink, B.2    Berens, C.3    Stentz, R.4    Hillen, W.5
  • 68
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison RD, Gill SC, Pardi A, Polisky B. (1994). High-resolution molecular discrimination by RNA. Science 263: 1425-29
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 69
    • 0033616774 scopus 로고    scopus 로고
    • Engineering precision RNA molecular switches
    • Soukup GA, Breaker RR. (1999). Engineering precision RNA molecular switches. PNAS 96: 3584-89
    • (1999) PNAS , vol.96 , pp. 3584-3589
    • Soukup, G.A.1    Breaker, R.R.2
  • 71
    • 6044261460 scopus 로고    scopus 로고
    • Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
    • Desai SK, Gallivan JP. (2004). Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc. 126: 13247-54
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 13247-13254
    • Desai, S.K.1    Gallivan, J.P.2
  • 72
    • 79851499341 scopus 로고    scopus 로고
    • Comparative study between transcriptionally- and translationally-Acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms
    • Lemay J-F, Desnoyers G, Blouin S, Heppell B, Bastet L, et al. (2011). Comparative study between transcriptionally- and translationally-Acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms. PLOS Genet. 7: e1001278
    • (2011) PLOS Genet , vol.7 , pp. e1001278
    • Lemay, J.-F.1    Desnoyers, G.2    Blouin, S.3    Heppell, B.4    Bastet, L.5
  • 73
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW. (1990). In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-22
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 74
    • 79960372206 scopus 로고    scopus 로고
    • Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast
    • Wittmann A, Suess B. (2011). Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast. Mol. Biosyst. 7: 2419-27
    • (2011) Mol. Biosyst , vol.7 , pp. 2419-2427
    • Wittmann, A.1    Suess, B.2
  • 75
    • 33847039871 scopus 로고    scopus 로고
    • A high-Throughput screen for synthetic riboswitches reveals mechanistic insights into their function
    • Lynch SA, Desai SK, Sajja HK, Gallivan JP. (2007). A high-Throughput screen for synthetic riboswitches reveals mechanistic insights into their function. Chem. Biol. 14: 173-84
    • (2007) Chem. Biol , vol.14 , pp. 173-184
    • Lynch, S.A.1    Desai, S.K.2    Sajja, H.K.3    Gallivan, J.P.4
  • 76
    • 38849129508 scopus 로고    scopus 로고
    • Random walks to synthetic riboswitches-A high-Throughput selection based on cell motility
    • Topp S, Gallivan JP. (2008). Random walks to synthetic riboswitches-A high-Throughput selection based on cell motility. ChemBioChem 9: 210-13
    • (2008) ChemBioChem , vol.9 , pp. 210-213
    • Topp, S.1    Gallivan, J.P.2
  • 77
    • 58549088724 scopus 로고    scopus 로고
    • A flow cytometry-based screen for synthetic riboswitches
    • Lynch SA, Gallivan JP. (2009). A flow cytometry-based screen for synthetic riboswitches. Nucleic Acids Res. 37: 184-92
    • (2009) Nucleic Acids Res , vol.37 , pp. 184-192
    • Lynch, S.A.1    Gallivan, J.P.2
  • 78
    • 84869070585 scopus 로고    scopus 로고
    • A high-Throughput, quantitative cell-based screen for efficient tailoring of RNA device activity
    • Liang JC, Chang AL, Kennedy AB, Smolke CD. (2012). A high-Throughput, quantitative cell-based screen for efficient tailoring of RNA device activity. Nucleic Acids Res. 40: 1-14
    • (2012) Nucleic Acids Res , vol.40 , pp. 1-14
    • Liang, J.C.1    Chang, A.L.2    Kennedy, A.B.3    Smolke, C.D.4
  • 79
    • 36148970816 scopus 로고    scopus 로고
    • Reengineering a natural riboswitch by dual genetic selection
    • Nomura Y, Yokobayashi Y. (2007). Reengineering a natural riboswitch by dual genetic selection. J. Am. Chem. Soc. 129: 13814-15
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 13814-13815
    • Nomura, Y.1    Yokobayashi, Y.2
  • 80
    • 57149117140 scopus 로고    scopus 로고
    • Engineering complex riboswitch regulation by dual genetic selection
    • Sharma V, Nomura Y, Yokobayashi Y. (2008). Engineering complex riboswitch regulation by dual genetic selection. J. Am. Chem. Soc. 130: 16310-15
    • (2008) J. Am. Chem. Soc , vol.130 , pp. 16310-16315
    • Sharma, V.1    Nomura, Y.2    Yokobayashi, Y.3
  • 81
    • 70350523604 scopus 로고    scopus 로고
    • Mechanism-guided library design and dual genetic selection of synthetic off riboswitches
    • Muranaka N, Abe K, Yokobayashi Y. (2009). Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches. ChemBioChem 10: 2375-81
    • (2009) ChemBioChem , vol.10 , pp. 2375-2381
    • Muranaka, N.1    Abe, K.2    Yokobayashi, Y.3
  • 82
    • 63249090231 scopus 로고    scopus 로고
    • An efficient platform for genetic selection and screening of gene switches in Escherichia coli
    • Muranaka N, Sharma V, Nomura Y, Yokobayashi Y. (2009). An efficient platform for genetic selection and screening of gene switches in Escherichia coli. Nucleic Acids Res. 37: e39
    • (2009) Nucleic Acids Res , vol.37 , pp. e39
    • Muranaka, N.1    Sharma, V.2    Nomura, Y.3    Yokobayashi, Y.4
  • 83
    • 84929574689 scopus 로고    scopus 로고
    • Ribozyme-based aminoglycoside switches of gene expression engineered by genetic selection in S cerevisiae
    • Klauser B, Atanasov J, Siewert LK, Hartig JS. (2015). Ribozyme-based aminoglycoside switches of gene expression engineered by genetic selection in S. cerevisiae. ACS Synth. Biol. 4: 516-25
    • (2015) ACS Synth. Biol , vol.4 , pp. 516-525
    • Klauser, B.1    Atanasov, J.2    Siewert, L.K.3    Hartig, J.S.4
  • 84
    • 84874216535 scopus 로고    scopus 로고
    • A yeast-based rapid prototype platform for gene control elements in mammalian cells
    • Wei KY, Chen YY, Smolke CD. (2013). A yeast-based rapid prototype platform for gene control elements in mammalian cells. Biotechnol. Bioeng. 110: 1201-10
    • (2013) Biotechnol. Bioeng , vol.110 , pp. 1201-1210
    • Wei, K.Y.1    Chen, Y.Y.2    Smolke, C.D.3
  • 85
    • 84929590046 scopus 로고    scopus 로고
    • Conditional control of mammalian gene expression by tetracycline-dependent hammerhead ribozymes
    • Beilstein K, Wittmann A, Grez M, Suess B. (2015). Conditional control of mammalian gene expression by tetracycline-dependent hammerhead ribozymes. ACS Synth. Biol. 4: 526-34
    • (2015) ACS Synth. Biol , vol.4 , pp. 526-534
    • Beilstein, K.1    Wittmann, A.2    Grez, M.3    Suess, B.4
  • 86
    • 66249084560 scopus 로고    scopus 로고
    • Design principles for riboswitch function
    • Beisel CL, Smolke CD. (2009). Design principles for riboswitch function. PLOS Comput. Biol. 5: e1000363
    • (2009) PLOS Comput. Biol , vol.5 , pp. e1000363
    • Beisel, C.L.1    Smolke, C.D.2
  • 88
    • 84928267620 scopus 로고    scopus 로고
    • Design criteria for synthetic riboswitches acting on transcription
    • Wachsmuth M, Domin G, Lorenz R, Serfling R, Findeiss S, et al. (2015). Design criteria for synthetic riboswitches acting on transcription. RNA Biol. 12: 221-31
    • (2015) RNA Biol , vol.12 , pp. 221-231
    • Wachsmuth, M.1    Domin, G.2    Lorenz, R.3    Serfling, R.4    Findeiss, S.5
  • 89
    • 84959368267 scopus 로고    scopus 로고
    • Automated physics-based design of synthetic riboswitches from diverse RNA aptamers
    • Espah Borujeni A, Mishler DM, Wang J, Huso W, Salis HM. (2016). Automated physics-based design of synthetic riboswitches from diverse RNA aptamers. Nucleic Acids Res. 44: 1-13
    • (2016) Nucleic Acids Res , vol.44 , pp. 1-13
    • Espah Borujeni, A.1    Mishler, D.M.2    Wang, J.3    Huso, W.4    Salis, H.M.5
  • 91
    • 33744548059 scopus 로고    scopus 로고
    • Nucleic acid aptamers and enzymes as sensors
    • Navani NK, Li Y. (2006). Nucleic acid aptamers and enzymes as sensors. Curr. Opin. Chem. Biol. 10: 272-81
    • (2006) Curr. Opin. Chem. Biol , vol.10 , pp. 272-281
    • Navani, N.K.1    Li, Y.2
  • 92
    • 84992751988 scopus 로고    scopus 로고
    • RNA fluorescence with light-up aptamers
    • Ouellet J. (2016). RNA fluorescence with light-up aptamers. Front. Chem. 4: 29
    • (2016) Front. Chem , vol.4 , pp. 29
    • Ouellet, J.1
  • 93
    • 0344430112 scopus 로고    scopus 로고
    • Aptamers switch on fluorescence of triphenylmethane dyes
    • Babendure JR, Adams SR, Tsien RY. (2003). Aptamers switch on fluorescence of triphenylmethane dyes. J. Am. Chem. Soc. 125: 14716-17
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 14716-14717
    • Babendure, J.R.1    Adams, S.R.2    Tsien, R.Y.3
  • 94
    • 79960959180 scopus 로고    scopus 로고
    • RNA mimics of green fluorescent protein
    • Paige JS, Wu KY, Jaffrey SR. (2011). RNA mimics of green fluorescent protein. Science 333: 642-46
    • (2011) Science , vol.333 , pp. 642-646
    • Paige, J.S.1    Wu, K.Y.2    Jaffrey, S.R.3
  • 95
    • 84888883550 scopus 로고    scopus 로고
    • A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA
    • Strack R, Disney M, Jaffrey S. (2013). A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA. Nat. Methods 10: 1219-24
    • (2013) Nat. Methods , vol.10 , pp. 1219-1224
    • Strack, R.1    Disney, M.2    Jaffrey, S.3
  • 96
    • 84913570361 scopus 로고    scopus 로고
    • Broccoli: Rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution
    • Filonov GS, Moon JD, Svensen N, Jaffrey SR. (2014). Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution. J. Am. Chem. Soc. 136: 16299-308
    • (2014) J. Am. Chem. Soc , vol.136 , pp. 16299-16308
    • Filonov, G.S.1    Moon, J.D.2    Svensen, N.3    Jaffrey, S.R.4
  • 97
    • 84858030373 scopus 로고    scopus 로고
    • Fluorescence imaging of cellular metabolites with RNA
    • Paige JS, Nguyen-Duc T, Song W, Jaffrey SR. (2012). Fluorescence imaging of cellular metabolites with RNA. Science 335: 1194
    • (2012) Science , vol.335 , pp. 1194
    • Paige, J.S.1    Nguyen-Duc, T.2    Song, W.3    Jaffrey, S.R.4
  • 98
    • 84991216424 scopus 로고    scopus 로고
    • Next-generation RNA-based fluorescent biosensors enable anaerobic detection of cyclic di-GMP
    • Wang XC, Wilson SC, Hammond MC.2016. Next-generation RNA-based fluorescent biosensors enable anaerobic detection of cyclic di-GMP. Nucleic Acids Res. 44: e139
    • (2016) Nucleic Acids Res , vol.44 , pp. e139
    • Wang, X.C.1    Wilson, S.C.2    Hammond, M.C.3
  • 99
    • 84930227399 scopus 로고    scopus 로고
    • RNA-based fluorescent biosensors for live cell imaging of second messenger cyclic di-AMP
    • Kellenberger CA, Chen C, Whiteley AT, Portnoy DA, Hammond MC. (2015). RNA-based fluorescent biosensors for live cell imaging of second messenger cyclic di-AMP. J. Am. Chem. Soc. 137: 6432-35
    • (2015) J. Am. Chem. Soc , vol.137 , pp. 6432-6435
    • Kellenberger, C.A.1    Chen, C.2    Whiteley, A.T.3    Portnoy, D.A.4    Hammond, M.C.5
  • 100
    • 84974851306 scopus 로고    scopus 로고
    • In vitro and in vivo enzyme activity screening via RNA-based fluorescent biosensors for S-Adenosyl-L-homocysteine (SAH
    • Su Y, Hickey SF, Keyser SGL, Hammond MC. (2016). In vitro and in vivo enzyme activity screening via RNA-based fluorescent biosensors for S-Adenosyl-L-homocysteine (SAH). J. Am. Chem. Soc. 138: 7040-47
    • (2016) J. Am. Chem. Soc , vol.138 , pp. 7040-7047
    • Su, Y.1    Hickey, S.F.2    Keyser, S.G.L.3    Hammond, M.C.4
  • 101
    • 84930227077 scopus 로고    scopus 로고
    • Imaging metabolite dynamics in living cells using a Spinach-based riboswitch
    • You M, Litke JL, Jaffrey SR. (2015). Imaging metabolite dynamics in living cells using a Spinach-based riboswitch. PNAS 112: E2756-65
    • (2015) PNAS , vol.112 , pp. E2756-E2765
    • You, M.1    Litke, J.L.2    Jaffrey, S.R.3
  • 102
    • 84979257985 scopus 로고    scopus 로고
    • Engineering and characterization of fluorogenic glycine riboswitches
    • Ketterer S, Gladis L, Kozica A, Meier M. (2016). Engineering and characterization of fluorogenic glycine riboswitches. Nucleic Acids Res. 44: 5983-92
    • (2016) Nucleic Acids Res , vol.44 , pp. 5983-5992
    • Ketterer, S.1    Gladis, L.2    Kozica, A.3    Meier, M.4
  • 103
    • 84889649107 scopus 로고    scopus 로고
    • Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer
    • Sunbul M, Jaschke A. (2013). Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer. Angew. Chem. Int. Ed. Engl. 52: 13401-4
    • (2013) Angew. Chem. Int. Ed. Engl , vol.52 , pp. 13401-13404
    • Sunbul, M.1    Jaschke, A.2
  • 104
    • 84908193573 scopus 로고    scopus 로고
    • RNA mango aptamerfluorophore: A bright, high-Affinity complex for RNA labeling and tracking
    • Dolgosheina EV, Jeng SC, Panchapakesan SS, Cojocaru R, Chen PS, et al. (2014). RNA mango aptamerfluorophore: a bright, high-Affinity complex for RNA labeling and tracking. ACS Chem. Biol. 9: 2412-20
    • (2014) ACS Chem. Biol , vol.9 , pp. 2412-2420
    • Dolgosheina, E.V.1    Jeng, S.C.2    Panchapakesan, S.S.3    Cojocaru, R.4    Chen, P.S.5
  • 107
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, et al. (2004). A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306: 275-79
    • (2004) Science , vol.306 , pp. 275-279
    • Mandal, M.1    Lee, M.2    Barrick, J.E.3    Weinberg, Z.4    Emilsson, G.M.5
  • 108
    • 77955465509 scopus 로고    scopus 로고
    • Using a riboswitch sensor to examine coenzyme B12 metabolism and transport in e coli
    • Fowler CC, Brown ED, Li Y. (2010). Using a riboswitch sensor to examine coenzyme B12 metabolism and transport in E coli. Chem. Biol. 17: 756-65
    • (2010) Chem. Biol , vol.17 , pp. 756-765
    • Fowler, C.C.1    Brown, E.D.2    Li, Y.3
  • 109
    • 84890856317 scopus 로고    scopus 로고
    • Exploring intermolecular interactions of a substrate binding protein using a riboswitch-based sensor
    • Fowler CC, Sugiman-Marangos S, Junop MS, Brown ED, Li Y. (2013). Exploring intermolecular interactions of a substrate binding protein using a riboswitch-based sensor. Chem. Biol. 20: 1502-12
    • (2013) Chem. Biol , vol.20 , pp. 1502-1512
    • Fowler, C.C.1    Sugiman-Marangos, S.2    Junop, M.S.3    Brown, E.D.4    Li, Y.5
  • 110
    • 84958998902 scopus 로고    scopus 로고
    • Characterization of a natural triple-Tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter
    • Zhou H, Zheng C, Su J, Chen B, Fu Y, et al. (2016). Characterization of a natural triple-Tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter. Sci. Rep. 6: 20871
    • (2016) Sci. Rep , vol.6 , pp. 20871
    • Zhou, H.1    Zheng, C.2    Su, J.3    Chen, B.4    Fu, Y.5
  • 111
    • 84862167101 scopus 로고    scopus 로고
    • High-Throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
    • Michener JK, Smolke CD. (2012). High-Throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab. Eng. 14: 306-16
    • (2012) Metab. Eng , vol.14 , pp. 306-316
    • Michener, J.K.1    Smolke, C.D.2
  • 112
    • 84941993348 scopus 로고    scopus 로고
    • Evolution of a chimeric aspartate kinase for L-lysine production using a synthetic RNA device
    • Wang J, Gao D, Yu X, Li W, Qi Q. (2015). Evolution of a chimeric aspartate kinase for L-lysine production using a synthetic RNA device. Appl. Microbiol. Biotechnol. 99: 8527-36
    • (2015) Appl. Microbiol. Biotechnol , vol.99 , pp. 8527-8536
    • Wang, J.1    Gao, D.2    Yu, X.3    Li, W.4    Qi, Q.5
  • 113
    • 84879164975 scopus 로고    scopus 로고
    • Synthetic RNA devices to expedite the evolution of metabolite-producing microbes
    • Yang J, Seo SW, Jang S, Shin SI, Lim CH, et al. (2013). Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat. Commun. 4: 1413
    • (2013) Nat. Commun , vol.4 , pp. 1413
    • Yang, J.1    Seo, S.W.2    Jang, S.3    Shin, S.I.4    Lim, C.H.5
  • 114
    • 84937923660 scopus 로고    scopus 로고
    • Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors
    • Meyer A, Pellaux R, Potot S, Becker K, Hohmann H-P, et al. (2015). Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors. Nat. Chem. 7: 673-78
    • (2015) Nat. Chem , vol.7 , pp. 673-678
    • Meyer, A.1    Pellaux, R.2    Potot, S.3    Becker, K.4    Hohmann, H.-P.5
  • 116
    • 84872157744 scopus 로고    scopus 로고
    • Riboswitches for intracellular study of genes involved in Francisella pathogenesis
    • Reynoso CMK, Miller MA, Bina JE, Gallivan JP, Weiss DS. (2012). Riboswitches for intracellular study of genes involved in Francisella pathogenesis. mBio 3: e00253-12
    • (2012) MBio , vol.3 , pp. e00253-e00312
    • Reynoso, C.M.K.1    Miller, M.A.2    Bina, J.E.3    Gallivan, J.P.4    Weiss, D.S.5
  • 118
    • 84885929738 scopus 로고    scopus 로고
    • Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in cyanobacterium Synechococcus elongatus PCC 7942
    • Nakahira Y, Ogawa A, Asano H, Oyama T, Tozawa Y. (2013). Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in cyanobacterium Synechococcus elongatus PCC 7942. Plant Cell Physiol. 54: 1724-35
    • (2013) Plant Cell Physiol , vol.54 , pp. 1724-1735
    • Nakahira, Y.1    Ogawa, A.2    Asano, H.3    Oyama, T.4    Tozawa, Y.5
  • 119
    • 84879802355 scopus 로고    scopus 로고
    • Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor
    • Rudolph MM, Vockenhuber MP, Suess B. (2013). Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor. Microbiology 159: 1416-22
    • (2013) Microbiology , vol.159 , pp. 1416-1422
    • Rudolph, M.M.1    Vockenhuber, M.P.2    Suess, B.3
  • 120
    • 84914159675 scopus 로고    scopus 로고
    • Regulation of gene expression in diverse cyanobacterial species by using theophylline-responsive riboswitches
    • Ma AT, Schmidt CM, Golden JW. (2014). Regulation of gene expression in diverse cyanobacterial species by using theophylline-responsive riboswitches. Appl. Environ. Microbiol. 80: 6704-13
    • (2014) Appl. Environ. Microbiol , vol.80 , pp. 6704-6713
    • Ma, A.T.1    Schmidt, C.M.2    Golden, J.W.3
  • 122
    • 0037388001 scopus 로고    scopus 로고
    • Conditional gene expression by controlling translation with tetracycline-binding aptamers
    • Suess B, Hanson S, Berens C, Fink B, Schroeder R, Hillen W. (2003). Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res. 31: 1853-58
    • (2003) Nucleic Acids Res , vol.31 , pp. 1853-1858
    • Suess, B.1    Hanson, S.2    Berens, C.3    Fink, B.4    Schroeder, R.5    Hillen, W.6
  • 123
    • 38049004429 scopus 로고    scopus 로고
    • Screening for engineered neomycin riboswitches that control translation initiation
    • Weigand JE, Sanchez M, Gunnesch E-B, Zeiher S, Schroeder R, Suess B. (2008). Screening for engineered neomycin riboswitches that control translation initiation. RNA 14: 89-97
    • (2008) RNA , vol.14 , pp. 89-97
    • Weigand, J.E.1    Sanchez, M.2    Gunnesch, E.-B.3    Zeiher, S.4    Schroeder, R.5    Suess, B.6
  • 124
    • 27144526390 scopus 로고    scopus 로고
    • An artificial riboswitch for controlling pre-mRNA splicing
    • Kim D-S, Gusti V, Pillai SG, Gaur RK. (2005). An artificial riboswitch for controlling pre-mRNA splicing. RNA 11: 1667-77
    • (2005) RNA , vol.11 , pp. 1667-1677
    • Kim, D.-S.1    Gusti, V.2    Pillai, S.G.3    Gaur, R.K.4
  • 125
    • 34547639506 scopus 로고    scopus 로고
    • Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast
    • Weigand JE, Suess B. (2007). Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast. Nucleic Acids Res. 35: 4179-85
    • (2007) Nucleic Acids Res , vol.35 , pp. 4179-4185
    • Weigand, J.E.1    Suess, B.2
  • 126
    • 34547512146 scopus 로고    scopus 로고
    • Riboswitching on RNA virus replication
    • Wang S, White KA. (2007). Riboswitching on RNA virus replication. PNAS 104: 10406-11
    • (2007) PNAS , vol.104 , pp. 10406-10411
    • Wang, S.1    White, K.A.2
  • 127
    • 77950885839 scopus 로고    scopus 로고
    • Inducible gene expression from the plastid genome by a synthetic riboswitch
    • Verhounig A, Karcher D, Bock R. (2010). Inducible gene expression from the plastid genome by a synthetic riboswitch. PNAS 107: 6204-9
    • (2010) PNAS , vol.107 , pp. 6204-6209
    • Verhounig, A.1    Karcher, D.2    Bock, R.3
  • 128
    • 84870601954 scopus 로고    scopus 로고
    • Synthetic riboswitches for external regulation of genes transferred by replication-deficient and oncolytic adenoviruses
    • Ketzer P, Haas SF, Engelhardt S, Hartig JS, Nettelbeck DM. (2012). Synthetic riboswitches for external regulation of genes transferred by replication-deficient and oncolytic adenoviruses. Nucleic Acids Res. 40: e167
    • (2012) Nucleic Acids Res , vol.40 , pp. e167
    • Ketzer, P.1    Haas, S.F.2    Engelhardt, S.3    Hartig, J.S.4    Nettelbeck, D.M.5
  • 129
    • 84893473726 scopus 로고    scopus 로고
    • Artificial riboswitches for gene expression and replication control of DNA and RNA viruses
    • Ketzer P, Kaufmann JK, Engelhardt S, Bossow S, von Kalle C, et al. (2014). Artificial riboswitches for gene expression and replication control of DNA and RNA viruses. PNAS 111: E554-62
    • (2014) PNAS , vol.111 , pp. E554-E562
    • Ketzer, P.1    Kaufmann, J.K.2    Engelhardt, S.3    Bossow, S.4    Von Kalle, C.5
  • 130
    • 84929631056 scopus 로고    scopus 로고
    • Control of alphavirus-based gene expression using engineered riboswitches
    • Bell CL, Yu D, Smolke CD, Geall AJ, Beard CW, Mason PW. (2015). Control of alphavirus-based gene expression using engineered riboswitches. Virology 483: 302-11
    • (2015) Virology , vol.483 , pp. 302-311
    • Bell, C.L.1    Yu, D.2    Smolke, C.D.3    Geall, A.J.4    Beard, C.W.5    Mason, P.W.6
  • 131
    • 34249806305 scopus 로고    scopus 로고
    • Guiding bacteria with small molecules and RNA
    • Topp S, Gallivan JP. (2008). Guiding bacteria with small molecules and RNA. J. Am. Chem. Soc. 129: 6807-11
    • (2008) J. Am. Chem. Soc , vol.129 , pp. 6807-6811
    • Topp, S.1    Gallivan, J.P.2
  • 132
    • 77952679687 scopus 로고    scopus 로고
    • Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems
    • Chen YY, Jensen MC, Smolke CD. (2010). Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems. PNAS 107: 8531-36
    • (2010) PNAS , vol.107 , pp. 8531-8536
    • Chen, Y.Y.1    Jensen, M.C.2    Smolke, C.D.3
  • 133
    • 84881408628 scopus 로고    scopus 로고
    • Dynamically reshaping signaling networks to program cell fate via genetic controllers
    • Galloway KE, Franco E, Smolke CD. (2013). Dynamically reshaping signaling networks to program cell fate via genetic controllers. Science 341: 1235005
    • (2013) Science , vol.341 , pp. 1235005
    • Galloway, K.E.1    Franco, E.2    Smolke, C.D.3
  • 134
    • 84947564362 scopus 로고    scopus 로고
    • Engineering dynamic cell cycle control with synthetic small moleculeresponsive RNA devices
    • Wei KY, Smolke CD. (2015). Engineering dynamic cell cycle control with synthetic small moleculeresponsive RNA devices. J. Biol. Eng. 9: 21
    • (2015) J. Biol. Eng , vol.9 , pp. 21
    • Wei, K.Y.1    Smolke, C.D.2
  • 135
    • 70350666262 scopus 로고    scopus 로고
    • A fast and efficient translational control system for conditional expression of yeast genes
    • Kötter P, Weigand JE, Meyer B, Entian K-D, Suess B. (2009). A fast and efficient translational control system for conditional expression of yeast genes. Nucleic Acids Res. 37: e120
    • (2009) Nucleic Acids Res , vol.37 , pp. e120
    • Kötter, P.1    Weigand, J.E.2    Meyer, B.3    Entian, K.-D.4    Suess, B.5
  • 136
    • 70350366781 scopus 로고    scopus 로고
    • Use of a riboswitch-controlled conditional hypomorphic mutation to uncover a role for the essential csrA gene in bacterial autoaggregation
    • Jin Y, Watt RM, Danchin A, Huang JD. (2009). Use of a riboswitch-controlled conditional hypomorphic mutation to uncover a role for the essential csrA gene in bacterial autoaggregation. J. Biol. Chem. 284: 28738-45
    • (2009) J. Biol. Chem , vol.284 , pp. 28738-28745
    • Jin, Y.1    Watt, R.M.2    Danchin, A.3    Huang, J.D.4
  • 137
    • 33749986680 scopus 로고    scopus 로고
    • Tandem riboswitch architectures exhibit complex gene control functions
    • Sudarsan N, Hammond MC, Block KF, Welz R, Barrick JE, et al. (2006). Tandem riboswitch architectures exhibit complex gene control functions. Science 314: 300-4
    • (2006) Science , vol.314 , pp. 300-304
    • Sudarsan, N.1    Hammond, M.C.2    Block, K.F.3    Welz, R.4    Barrick, J.E.5
  • 138
    • 33947714417 scopus 로고    scopus 로고
    • Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis
    • Welz R, Breaker RR. (2007). Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis. RNA 13: 573-82
    • (2007) RNA , vol.13 , pp. 573-582
    • Welz, R.1    Breaker, R.R.2
  • 139
    • 54249113318 scopus 로고    scopus 로고
    • Higher-order cellular information processing with synthetic RNA devices
    • Win MN, Smolke CD. (2008). Higher-order cellular information processing with synthetic RNA devices. Science 322: 456-60
    • (2008) Science , vol.322 , pp. 456-460
    • Win, M.N.1    Smolke, C.D.2
  • 140
    • 84864694015 scopus 로고    scopus 로고
    • Post-Transcriptional Boolean computation by combining aptazymes controlling mRNA translation initiation and tRNA activation
    • Klauser B, Saragliadis A, Ausländer S, Wieland M, Berthold MR, Hartig JS. (2012). Post-Transcriptional Boolean computation by combining aptazymes controlling mRNA translation initiation and tRNA activation. Mol. Biosyst. 8: 2242
    • (2012) Mol. Biosyst , vol.8 , pp. 2242
    • Klauser, B.1    Saragliadis, A.2    Ausländer, S.3    Wieland, M.4    Berthold, M.R.5    Hartig, J.S.6
  • 141
    • 77956324713 scopus 로고    scopus 로고
    • A synthetic riboswitch with chemical band-pass response
    • Muranaka N, Yokobayashi Y. (2010). A synthetic riboswitch with chemical band-pass response. Chem. Commun. 46: 6825-27
    • (2010) Chem. Commun , vol.46 , pp. 6825-6827
    • Muranaka, N.1    Yokobayashi, Y.2
  • 142
    • 84934907570 scopus 로고    scopus 로고
    • Exploring lysine riboswitch for metabolic flux control and improvement of L-lysine synthesis in Corynebacterium glutamicum
    • Zhou LB, Zeng AP. (2015). Exploring lysine riboswitch for metabolic flux control and improvement of L-lysine synthesis in Corynebacterium glutamicum. ACS Synth. Biol. 4: 729-34
    • (2015) ACS Synth. Biol , vol.4 , pp. 729-734
    • Zhou, L.B.1    Zeng, A.P.2
  • 143
    • 84952794328 scopus 로고    scopus 로고
    • Engineering a lysine-ON riboswitch for metabolic control of lysine production in Corynebacterium glutamicum
    • Zhou LB, Zeng AP. (2015). Engineering a lysine-ON riboswitch for metabolic control of lysine production in Corynebacterium glutamicum. ACS Synth. Biol. 4: 1335-40
    • (2015) ACS Synth. Biol , vol.4 , pp. 1335-1340
    • Zhou, L.B.1    Zeng, A.P.2
  • 144
  • 145
    • 0028580734 scopus 로고
    • Wavelength mutations and posttranslational autoxidation of green fluorescent protein
    • Heim R, Prasher DC, Tsien RY. (1994). Wavelength mutations and posttranslational autoxidation of green fluorescent protein. PNAS 91: 12501-4
    • (1994) PNAS , vol.91 , pp. 12501-12504
    • Heim, R.1    Prasher, D.C.2    Tsien, R.Y.3
  • 146
    • 77953362042 scopus 로고    scopus 로고
    • Quantitative liquid chromatography-Tandem mass spectrometry profiling of activated methyl cycle metabolites involved in LuxS-dependent quorum sensing in Escherichia coli
    • Halliday NM, Hardie KR, Williams P, Winzer K, Barrett DA. (2010). Quantitative liquid chromatography-Tandem mass spectrometry profiling of activated methyl cycle metabolites involved in LuxS-dependent quorum sensing in Escherichia coli. Anal. Biochem. 403: 20-29
    • (2010) Anal. Biochem , vol.403 , pp. 20-29
    • Halliday, N.M.1    Hardie, K.R.2    Williams, P.3    Winzer, K.4    Barrett, D.A.5
  • 147
    • 84959440981 scopus 로고    scopus 로고
    • Hybrid promiscuous (Hypr GGDEF enzymes produce cyclic AMP-GMP (3, 3-cGAMP
    • Hallberg ZF, Wang XC, Wright TA, Nan B, Ad O, et al. (2016). Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3, 3-cGAMP). PNAS 113: 1790-95
    • (2016) PNAS , vol.113 , pp. 1790-1795
    • Hallberg, Z.F.1    Wang, X.C.2    Wright, T.A.3    Nan, B.4    Ad, O.5


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