-
1
-
-
84859772410
-
Synthetic biology and the development of tools for metabolic engineering
-
Keasling, J.D. (2012) Synthetic biology and the development of tools for metabolic engineering. Metab. Eng., 14, 189-195.
-
(2012)
Metab. Eng.
, vol.14
, pp. 189-195
-
-
Keasling, J.D.1
-
2
-
-
84865297453
-
Synthetic biology with RNA: Progress report
-
Benenson, Y. (2012) Synthetic biology with RNA: progress report. Curr. Opin. Chem. Biol., 16, 278-284.
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, pp. 278-284
-
-
Benenson, Y.1
-
3
-
-
78349306846
-
Ligand-dependent regulatory RNA parts for synthetic biology in eukaryotes
-
Wieland, M. and Fussenegger, M. (2010) Ligand-dependent regulatory RNA parts for synthetic biology in eukaryotes. Curr. Opin. Chem. Biol., 21, 760-765.
-
(2010)
Curr. Opin. Chem. Biol.
, vol.21
, pp. 760-765
-
-
Wieland, M.1
Fussenegger, M.2
-
4
-
-
33646582649
-
RNA synthetic biology
-
Isaacs, F.J., Dwyer, D.J. and Collins, J.J. (2006) RNA synthetic biology. Nat. Biotechnol., 24, 545-554.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 545-554
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Collins, J.J.3
-
5
-
-
84863617223
-
Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators
-
Wittmann, A. and Suess, B. (2012) Engineered riboswitches: expanding researchers' toolbox with synthetic RNA regulators. FEBS Lett., 586, 2076-2083.
-
(2012)
FEBS Lett.
, vol.586
, pp. 2076-2083
-
-
Wittmann, A.1
Suess, B.2
-
6
-
-
75749138167
-
Emerging applications of riboswitches in chemical biology
-
Topp, S. and Gallivan, J.P. (2010) Emerging applications of riboswitches in chemical biology. ACS Chem. Biol., 5, 139-148.
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 139-148
-
-
Topp, S.1
Gallivan, J.P.2
-
7
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk, C. and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-510.
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
8
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
Joyce, G.F. (2004) Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem., 73, 791-836.
-
(2004)
Annu. Rev. Biochem
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
10
-
-
84863878432
-
Riboswitches: Structures and mechanisms
-
Garst, A.D., Edwards, A.L. and Batey, R.T. (2011) Riboswitches: structures and mechanisms. Cold Spring Harb. Perspect. Biol., 3, a003533.
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
-
-
Garst, A.D.1
Edwards, A.L.2
Batey, R.T.3
-
11
-
-
77955465509
-
Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in e
-
Fowler, C.C., Brown, E.D. and Li, Y. (2010) Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. Coli. Chem. Biol., 17, 756-765.
-
(2010)
Coli. Chem. Biol.
, vol.17
, pp. 756-765
-
-
Fowler, C.C.1
Brown, E.D.2
Li, Y.3
-
12
-
-
77952507419
-
Reprogramming bacteria to seek and destroy an herbicide
-
Sinha, J., Reyes, S.J. and Gallivan, J.P. (2010) Reprogramming bacteria to seek and destroy an herbicide. Nat. Chem. Biol., 6, 464-470.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 464-470
-
-
Sinha, J.1
Reyes, S.J.2
Gallivan, J.P.3
-
13
-
-
84862167101
-
High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
-
Michener, J.K. and Smolke, C.D. (2012) High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab. Eng., 14, 306-316.
-
(2012)
Metab. Eng.
, vol.14
, pp. 306-316
-
-
Michener, J.K.1
Smolke, C.D.2
-
14
-
-
78650368337
-
Synthetic riboswitches that induce gene expression in diverse bacterial species
-
Topp, S., Reynoso, C.M., Seeliger, J.C., Goldlust, I.S., Desai, S.K., Murat, D., Shen, A., Puri, A.W., Komeili, A., Bertozzi, C.R. et al. (2010) Synthetic riboswitches that induce gene expression in diverse bacterial species. Appl. Environ. Microbiol., 76, 7881-7884.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7881-7884
-
-
Topp, S.1
Reynoso, C.M.2
Seeliger, J.C.3
Goldlust, I.S.4
Desai, S.K.5
Murat, D.6
Shen, A.7
Puri, A.W.8
Komeili, A.9
Bertozzi, C.R.10
-
15
-
-
70350523604
-
Mechanismguided library design and dual genetic selection of synthetic off riboswitches
-
Muranaka, N., Abe, K. and Yokobayashi, Y. (2009) Mechanismguided library design and dual genetic selection of synthetic OFF riboswitches. Chembiochem, 10, 2375-2381.
-
(2009)
Chembiochem
, vol.10
, pp. 2375-2381
-
-
Muranaka, N.1
Abe, K.2
Yokobayashi, Y.3
-
16
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
Suess, B., Fink, B., Berens, C., Stentz, R. and Hillen, W. (2004) A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res., 32, 1610-1614.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stentz, R.4
Hillen, W.5
-
17
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai, S.K. and Gallivan, J.P. (2004) Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc., 126, 13247-13254.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
18
-
-
0141677751
-
Tetracycline-aptamer-mediated translational regulation in yeast
-
Hanson, S., Berthelot, K., Fink, B., McCarthy, J.E. and Suess, B. (2003) Tetracycline-aptamer-mediated translational regulation in yeast. Mol. Microbiol., 49, 1627-1637.
-
(2003)
Mol. Microbiol
, vol.49
, pp. 1627-1637
-
-
Hanson, S.1
Berthelot, K.2
Fink, B.3
McCarthy, J.E.4
Suess, B.5
-
19
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
Win, M.N. and Smolke, C.D. (2008) Higher-order cellular information processing with synthetic RNA devices. Science, 322, 456-460.
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
20
-
-
35448990907
-
A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
-
Win, M.N. and Smolke, C.D. (2007) A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc. Natl Acad. Sci. USA, 104, 14283-14288.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 14283-14288
-
-
Win, M.N.1
Smolke, C.D.2
-
21
-
-
84882622399
-
Modularity of select riboswitch expression platform enables facile engineering of novel genetic regulatory devices
-
Ceres, P., Garst, A.D., Marcano-Velá zquez, J.G. and Batey, R.T. (2013) Modularity of select riboswitch expression platform enables facile engineering of novel genetic regulatory devices. ACS Synth. Biol., 2, 463-472.
-
(2013)
ACS Synth. Biol.
, vol.2
, pp. 463-472
-
-
Ceres, P.1
Garst, A.D.2
Marcano-Velázquez, J.G.3
Batey, R.T.4
-
22
-
-
68349141373
-
RNA synthetic biology inspired from bacteria: Construction of transcription attenuators under antisense regulation
-
Dawid, A., Cayrol, B. and Isambert, H. (2009) RNA synthetic biology inspired from bacteria: construction of transcription attenuators under antisense regulation. Phys. Biol., 6, 025007.
-
(2009)
Phys. Biol
, vol.6
, pp. 025007
-
-
Dawid, A.1
Cayrol, B.2
Isambert, H.3
-
23
-
-
84876376374
-
De novo design of a synthetic riboswitch that regulates transcription termination
-
Wachsmuth, M., Findeiss, S., Weissheimer, N., Stadler, P.F. and Morl, M. (2013) De novo design of a synthetic riboswitch that regulates transcription termination. Nucleic Acids Res., 41, 2541-2551.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2541-2551
-
-
Wachsmuth, M.1
Findeiss, S.2
Weissheimer, N.3
Stadler, P.F.4
Morl, M.5
-
24
-
-
70350771280
-
A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
-
Loh, E., Dussurget, O., Gripenland, J., Vaitkevicius, K., Tiensuu, T., Mandin, P., Repoila, F., Buchrieser, C., Cossart, P. and Johansson, J. (2009) A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes. Cell, 139, 770-779.
-
(2009)
Cell
, vol.139
, pp. 770-779
-
-
Loh, E.1
Dussurget, O.2
Gripenland, J.3
Vaitkevicius, K.4
Tiensuu, T.5
Mandin, P.6
Repoila, F.7
Buchrieser, C.8
Cossart, P.9
Johansson, J.10
-
25
-
-
84863226500
-
Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
-
Qi, L., Lucks, J.B., Liu, C.C., Mutalik, V.K. and Arkin, A.P. (2012) Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res., 40, 5775-5786.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5775-5786
-
-
Qi, L.1
Lucks, J.B.2
Liu, C.C.3
Mutalik, V.K.4
Arkin, A.P.5
-
26
-
-
79957700542
-
Versatile RNA-sensing transcriptional regulators for engineering genetic networks
-
Lucks, J.B., Qi, L., Mutalik, V.K., Wang, D. and Arkin, A.P. (2011) Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc. Natl Acad. Sci. USA, 108, 8617-8622.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 8617-8622
-
-
Lucks, J.B.1
Qi, L.2
Mutalik, V.K.3
Wang, D.4
Arkin, A.P.5
-
27
-
-
84883467214
-
A modular strategy for engineering orthogonal chimeric RNA transcription regulators
-
Takahashi, M. and Lucks, J.B. (2013) A modular strategy for engineering orthogonal chimeric RNA transcription regulators. Nucleic Acids Res, 41, 7577-7588.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7577-7588
-
-
Takahashi, M.1
Lucks, J.B.2
-
28
-
-
79957467767
-
From SELEX to cell dual selections for synthetic riboswitches
-
Sinha, J., Topp, S. and Gallivan, J.P. (2011) From SELEX to cell dual selections for synthetic riboswitches. Methods Enzymol., 497, 207-220.
-
(2011)
Methods Enzymol.
, vol.497
, pp. 207-220
-
-
Sinha, J.1
Topp, S.2
Gallivan, J.P.3
-
29
-
-
0032831634
-
Relationship between internucleotide linkage geometry and the stability of RNA
-
Soukup, G.A. and Breaker, R.R. (1999) Relationship between internucleotide linkage geometry and the stability of RNA. RNA, 5, 1308-1325.
-
(1999)
RNA
, vol.5
, pp. 1308-1325
-
-
Soukup, G.A.1
Breaker, R.R.2
-
30
-
-
79960372206
-
Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast
-
Wittmann, A. and Suess, B. (2011) Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast. Mol. Biosyst., 7, 2419-2427.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2419-2427
-
-
Wittmann, A.1
Suess, B.2
-
31
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
Wickiser, J.K., Winkler, W.C., Breaker, R.R. and Crothers, D.M. (2005) The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell, 18, 49-60.
-
(2005)
Mol. Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
32
-
-
0003903343
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Sambrook, J. and Russel, D.W. (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(2001)
Molecular Cloning: A Laboratory Manual, 3rd Edn
-
-
Sambrook, J.1
Russel, D.W.2
-
33
-
-
0027050148
-
Recursive PCR: A novel technique for total gene synthesis
-
Prodromou, C. and Pearl, L.H. (1992) Recursive PCR: a novel technique for total gene synthesis. Protein Eng., 5, 827-829.
-
(1992)
Protein Eng
, vol.5
, pp. 827-829
-
-
Prodromou, C.1
Pearl, L.H.2
-
34
-
-
0020048592
-
Binding of Escherichia coli RNA polymerase holoenzyme to bacteriophage T7 DNA. Measurements of binding at bacteriophage T7 promoter A1 using a template competition assay
-
Kadesch, T.R., Rosenberg, S. and Chamberlin, M.J. (1982) Binding of Escherichia coli RNA polymerase holoenzyme to bacteriophage T7 DNA. Measurements of binding at bacteriophage T7 promoter A1 using a template competition assay. J. Mol. Biol., 155, 1-29.
-
(1982)
J. Mol. Biol
, vol.155
, pp. 1-29
-
-
Kadesch, T.R.1
Rosenberg, S.2
Chamberlin, M.J.3
-
35
-
-
57349085197
-
In vitro approaches to analysis of transcription termination
-
Artsimovitch, I. and Henkin, T.M. (2009) In vitro approaches to analysis of transcription termination. Methods, 47, 37-43.
-
(2009)
Methods
, vol.47
, pp. 37-43
-
-
Artsimovitch, I.1
Henkin, T.M.2
-
36
-
-
34548253368
-
Structure and mechanism of a metal-sensing regulatory RNA
-
Dann, C.E., Wakeman, C.A., Sieling, C.L., Baker, S.B., Irnov, I. and Winkler, W.C. (2007) Structure and mechanism of a metal-sensing regulatory RNA. Cell, 130, 878-892.
-
(2007)
Cell
, vol.130
, pp. 878-892
-
-
Dann, C.E.1
Wakeman, C.A.2
Sieling, C.L.3
Baker, S.B.4
Irnov, I.5
Winkler, W.C.6
-
37
-
-
84866340759
-
Insights into the regulatory landscape of the lysine riboswitch
-
Garst, A.D., Porter, E.B. and Batey, R.T. (2012) Insights into the regulatory landscape of the lysine riboswitch. J. Mol. Biol., 423, 17-33.
-
(2012)
J. Mol. Biol.
, vol.423
, pp. 17-33
-
-
Garst, A.D.1
Porter, E.B.2
Batey, R.T.3
-
38
-
-
65649133549
-
Monitoring RNA-ligand interactions using isothermal titration calorimetry
-
Gilbert, S.D. and Batey, R.T. (2009) Monitoring RNA-ligand interactions using isothermal titration calorimetry. Methods Mol. Biol., 540, 97-114.
-
(2009)
Methods Mol. Biol
, vol.540
, pp. 97-114
-
-
Gilbert, S.D.1
Batey, R.T.2
-
39
-
-
80052769856
-
Revisiting the optimal c value for isothermal titration calorimetry
-
Broecker, J., Vargas, C. and Keller, S. (2011) Revisiting the optimal c value for isothermal titration calorimetry. Anal. Biochemi., 418, 307-309.
-
(2011)
Anal. Biochemi.
, vol.418
, pp. 307-309
-
-
Broecker, J.1
Vargas, C.2
Keller, S.3
-
40
-
-
0345293146
-
On the value of c: Can low affinity systems be studied by isothermal titration calorimetry J
-
Turnbull, W.B. and Daranas, A.H. (2003) On the value of c: can low affinity systems be studied by isothermal titration calorimetry J. Am. Chem. Soc., 125, 14859-14866.
-
(2003)
Am. Chem. Soc
, vol.125
, pp. 14859-14866
-
-
Turnbull, W.B.1
Daranas, A.H.2
-
41
-
-
0020649604
-
The tac promoter: A functional hybrid derived from the trp and lac promoters
-
de Boer, H.A., Comstock, L.J. and Vasser, M. (1983) The tac promoter: a functional hybrid derived from the trp and lac promoters. Proc. Natl Acad. Sci. USA, 80, 21-25.
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 21-25
-
-
De Boer, H.A.1
Comstock, L.J.2
Vasser, M.3
-
42
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame single-gene knockout mutants: The Keio collection
-
2006.0008
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K.A., Tomita, M., Wanner, B.L. and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol., 2, 2006.0008.
-
(2006)
Mol. Syst. Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
43
-
-
46349083026
-
The distributions, mechanisms, and structures of metabolite-binding riboswitches
-
Barrick, J.E. and Breaker, R.R. (2007) The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol., 8, R239.
-
(2007)
Genome Biol
, vol.8
-
-
Barrick, J.E.1
Breaker, R.R.2
-
44
-
-
42149091618
-
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
-
Wang, J.X. and Breaker, R.R. (2008) Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem. Cell. Biol., 86, 157-168.
-
(2008)
Biochem. Cell. Biol
, vol.86
, pp. 157-168
-
-
Wang, J.X.1
Breaker, R.R.2
-
45
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee, E.R., Baker, J.L., Weinberg, Z., Sudarsan, N. and Breaker, R.R. (2010) An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science, 329, 845-848.
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
46
-
-
80054769140
-
Mechanism for gene control by a natural allosteric group i ribozyme
-
Chen, A.G., Sudarsan, N. and Breaker, R.R. (2011) Mechanism for gene control by a natural allosteric group I ribozyme. RNA, 17, 1967-1972.
-
(2011)
RNA
, vol.17
, pp. 1967-1972
-
-
Chen, A.G.1
Sudarsan, N.2
Breaker, R.R.3
-
47
-
-
0842334528
-
Adenine riboswitches and gene activation by disruption of a transcription terminator
-
Mandal, M. and Breaker, R.R. (2004) Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat. Struct. Mol. Biol., 11, 29-35.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 29-35
-
-
Mandal, M.1
Breaker, R.R.2
-
48
-
-
79851499341
-
Comparative study between transcriptionally-and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms
-
Lemay, J.F., Desnoyers, G., Blouin, S., Heppell, B., Bastet, L., St-Pierre, P., Masse, E. and Lafontaine, D.A. (2011) Comparative study between transcriptionally-and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms. PLoS Genet., 7, e1001278.
-
(2011)
PLoS Genet.
, vol.7
-
-
Lemay, J.F.1
Desnoyers, G.2
Blouin, S.3
Heppell, B.4
Bastet, L.5
St-Pierre, P.6
Masse, E.7
Lafontaine, D.A.8
-
49
-
-
26444620938
-
The kinetics of ligand binding by an adenine-sensing riboswitch
-
Wickiser, J.K., Cheah, M.T., Breaker, R.R. and Crothers, D.M. (2005) The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry, 44, 13404-13414.
-
(2005)
Biochemistry
, vol.44
, pp. 13404-13414
-
-
Wickiser, J.K.1
Cheah, M.T.2
Breaker, R.R.3
Crothers, D.M.4
-
50
-
-
84867629183
-
Direct observation of cotranscriptional folding in an adenine riboswitch
-
Frieda, K.L. and Block, S.M. (2012) Direct observation of cotranscriptional folding in an adenine riboswitch. Science, 338, 397-400.
-
(2012)
Science
, vol.338
, pp. 397-400
-
-
Frieda, K.L.1
Block, S.M.2
-
51
-
-
33747345020
-
Folding of the adenine riboswitch
-
Lemay, J.F., Penedo, J.C., Tremblay, R., Lilley, D.M. and Lafontaine, D.A. (2006) Folding of the adenine riboswitch. Chem. Biol., 13, 857-868.
-
(2006)
Chem. Biol
, vol.13
, pp. 857-868
-
-
Lemay, J.F.1
Penedo, J.C.2
Tremblay, R.3
Lilley, D.M.4
Lafontaine, D.A.5
-
52
-
-
38649086717
-
Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM in vivo and in vitro
-
Tomsic, J., McDaniel, B.A., Grundy, F.J. and Henkin, T.M. (2008) Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro. J. Bacteriol., 190, 823-833.
-
(2008)
J. Bacteriol
, vol.190
, pp. 823-833
-
-
Tomsic, J.1
McDaniel, B.A.2
Grundy, F.J.3
Henkin, T.M.4
-
53
-
-
78649529299
-
SAM recognition and conformational switching mechanism in the Bacillus subtilis yitJ S box/SAM-I riboswitch
-
Lu, C., Ding, F., Chowdhury, A., Pradhan, V., Tomsic, J., Holmes, W.M., Henkin, T.M. and Ke, A. (2010) SAM recognition and conformational switching mechanism in the Bacillus subtilis yitJ S box/SAM-I riboswitch. J. Mol. Biol., 404, 803-818.
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 803-818
-
-
Lu, C.1
Ding, F.2
Chowdhury, A.3
Pradhan, V.4
Tomsic, J.5
Holmes, W.M.6
Henkin, T.M.7
Ke, A.8
-
54
-
-
33745628336
-
Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
-
Montange, R.K. and Batey, R.T. (2006) Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature, 441, 1172-1175.
-
(2006)
Nature
, vol.441
, pp. 1172-1175
-
-
Montange, R.K.1
Batey, R.T.2
-
55
-
-
33846929128
-
Encoding folding paths of RNA switches
-
Xayaphoummine, A., Viasnoff, V., Harlepp, S. and Isambert, H. (2007) Encoding folding paths of RNA switches. Nucleic Acids Res., 35, 614-622.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 614-622
-
-
Xayaphoummine, A.1
Viasnoff, V.2
Harlepp, S.3
Isambert, H.4
-
56
-
-
0033120034
-
The mechanism of intrinsic transcription termination
-
Gusarov, I. and Nudler, E. (1999) The mechanism of intrinsic transcription termination. Mol. Cell, 3, 495-504.
-
(1999)
Mol. Cell
, vol.3
, pp. 495-504
-
-
Gusarov, I.1
Nudler, E.2
-
57
-
-
0036668461
-
Transcription termination and anti-termination in E. Coli
-
Nudler, E. and Gottesman, M.E. (2002) Transcription termination and anti-termination in E. Coli. Genes Cells, 7, 755-768.
-
(2002)
Genes Cells
, vol.7
, pp. 755-768
-
-
Nudler, E.1
Gottesman, M.E.2
-
58
-
-
0028224199
-
Highresolution molecular discrimination by RNA
-
Jenison, R.D., Gill, S.C., Pardi, A. and Polisky, B. (1994) Highresolution molecular discrimination by RNA. Science, 263, 1425-1429.
-
(1994)
Science
, vol.263
, pp. 1425-1429
-
-
Jenison, R.D.1
Gill, S.C.2
Pardi, A.3
Polisky, B.4
-
59
-
-
0347536265
-
Analysis of the intrinsic transcription termination mechanism and its control
-
Nudler, E. and Gusarov, I. (2003) Analysis of the intrinsic transcription termination mechanism and its control. Methods Enzymol., 371, 369-382.
-
(2003)
Methods Enzymol
, vol.371
, pp. 369-382
-
-
Nudler, E.1
Gusarov, I.2
-
60
-
-
78149300889
-
Structural basis for recognition of S-adenosylhomocysteine by riboswitches
-
Edwards, A.L., Reyes, F.E., Heroux, A. and Batey, R.T. (2010) Structural basis for recognition of S-adenosylhomocysteine by riboswitches. RNA, 16, 2144-2155.
-
(2010)
RNA
, vol.16
, pp. 2144-2155
-
-
Edwards, A.L.1
Reyes, F.E.2
Heroux, A.3
Batey, R.T.4
-
61
-
-
40849147457
-
Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling
-
Wang, J.X., Lee, E.R., Morales, D.R., Lim, J. and Breaker, R.R. (2008) Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling. Mol. Cell, 29, 691-702.
-
(2008)
Mol. Cell
, vol.29
, pp. 691-702
-
-
Wang, J.X.1
Lee, E.R.2
Morales, D.R.3
Lim, J.4
Breaker, R.R.5
-
62
-
-
0034853943
-
A tetracyclinebinding RNA aptamer
-
Berens, C., Thain, A. and Schroeder, R. (2001) A tetracyclinebinding RNA aptamer. Bioorg. Med. Chem., 9, 2549-2556.
-
(2001)
Bioorg. Med. Chem
, vol.9
, pp. 2549-2556
-
-
Berens, C.1
Thain, A.2
Schroeder, R.3
-
63
-
-
85011936087
-
Engineered riboswitches: Overview, problems and trends
-
Suess, B. and Weigand, J.E. (2008) Engineered riboswitches: overview, problems and trends. RNA Biol., 5, 24-29.
-
(2008)
RNA Biol
, vol.5
, pp. 24-29
-
-
Suess, B.1
Weigand, J.E.2
-
64
-
-
72149126118
-
A switch in time: Detailing the life of a riboswitch
-
Garst, A.D. and Batey, R.T. (2009) A switch in time: detailing the life of a riboswitch. Biochim. Biophys. Acta, 1789, 584-591.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 584-591
-
-
Garst, A.D.1
Batey, R.T.2
-
65
-
-
34249278470
-
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
-
Cheah, M.T., Wachter, A., Sudarsan, N. and Breaker, R.R. (2007) Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature, 447, 497-500.
-
(2007)
Nature
, vol.447
, pp. 497-500
-
-
Cheah, M.T.1
Wachter, A.2
Sudarsan, N.3
Breaker, R.R.4
-
66
-
-
0038136962
-
Metabolitebinding RNA domains are present in the genes of eukaryotes
-
Sudarsan, N., Barrick, J.E. and Breaker, R.R. (2003) Metabolitebinding RNA domains are present in the genes of eukaryotes. RNA, 9, 644-647.
-
(2003)
RNA
, vol.9
, pp. 644-647
-
-
Sudarsan, N.1
Barrick, J.E.2
Breaker, R.R.3
-
67
-
-
37849045636
-
Riboswitch control of gene expression in plants by splicing and alternative 30 end processing of mRNAs
-
Wachter, A., Tunc-Ozdemir, M., Grove, B.C., Green, P.J., Shintani, D.K. and Breaker, R.R. (2007) Riboswitch control of gene expression in plants by splicing and alternative 30 end processing of mRNAs. Plant Cell, 19, 3437-3450.
-
(2007)
Plant Cell
, vol.19
, pp. 3437-3450
-
-
Wachter, A.1
Tunc-Ozdemir, M.2
Grove, B.C.3
Green, P.J.4
Shintani, D.K.5
Breaker, R.R.6
|