-
1
-
-
77952679687
-
Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems
-
Chen, Y.Y., Jensen, M.C. and Smolke, C.D. (2010) Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems. Proc. Natl. Acad. Sci. USA, 107, 8531-8536.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8531-8536
-
-
Chen, Y.Y.1
Jensen, M.C.2
Smolke, C.D.3
-
2
-
-
78649429678
-
Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins
-
Culler, S.J., Hoff, K.G. and Smolke, C.D. (2010) Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins. Science, 330, 1251-1255.
-
(2010)
Science
, vol.330
, pp. 1251-1255
-
-
Culler, S.J.1
Hoff, K.G.2
Smolke, C.D.3
-
3
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro, D.-K., Paradise, E.M., Ouellet, M., Fisher, K.J., Newman, K.L., Ndungu, J.M., Ho, K.A., Eachus, R.A., Ham, T.S., Kirby, J. et al. (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature, 440, 940-943.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
-
4
-
-
77952507419
-
Reprogramming bacteria to seek and destroy an herbicide
-
Sinha, J., Reyes, S.J. and Gallivan, J.P. (2010) Reprogramming bacteria to seek and destroy an herbicide. Nat. Chem. Biol., 6, 464-470.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 464-470
-
-
Sinha, J.1
Reyes, S.J.2
Gallivan, J.P.3
-
5
-
-
34548311711
-
Forty years of in vitro evolution
-
Joyce, G.F. (2007) Forty years of in vitro evolution. Angew. Chem. Int. Ed. Engl., 46, 6420-6436.
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 6420-6436
-
-
Joyce, G.F.1
-
6
-
-
14744285972
-
From genes to machines: DNA nanomechanical devices
-
Seeman, N.C. (2005) From genes to machines: DNA nanomechanical devices. Trends Biochem. Sci., 30, 119-125.
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 119-125
-
-
Seeman, N.C.1
-
7
-
-
62649171253
-
Frameworks for programming biological function through RNA parts and devices
-
Win, M.N., Liang, J.C. and Smolke, C.D. (2009) Frameworks for programming biological function through RNA parts and devices. Chem. Biol., 16, 298-310.
-
(2009)
Chem. Biol.
, vol.16
, pp. 298-310
-
-
Win, M.N.1
Liang, J.C.2
Smolke, C.D.3
-
9
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel, D.P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
10
-
-
35448990907
-
A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
-
Win, M.N. and Smolke, C.D. (2007) A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc. Natl. Acad. Sci. USA, 104, 14283-14288.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 14283-14288
-
-
Win, M.N.1
Smolke, C.D.2
-
11
-
-
34547519117
-
Engineering high-speed allosteric hammerhead ribozymes
-
Link, K.H., Guo, L., Ames, T.D., Yen, L., Mulligan, R.C. and Breaker, R.R. (2007) Engineering high-speed allosteric hammerhead ribozymes. Biol. Chem., 388, 779-786.
-
(2007)
Biol. Chem.
, vol.388
, pp. 779-786
-
-
Link, K.H.1
Guo, L.2
Ames, T.D.3
Yen, L.4
Mulligan, R.C.5
Breaker, R.R.6
-
12
-
-
79960372206
-
Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast
-
Wittmann, A. and Suess, B. (2011) Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast. Mol. Biosyst., 7, 2419-2427.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2419-2427
-
-
Wittmann, A.1
Suess, B.2
-
13
-
-
70350107527
-
Direct selection for ribozyme cleavage activity in cells
-
Chen, X., Denison, L., Levy, M. and Ellington, A.D. (2009) Direct selection for ribozyme cleavage activity in cells. RNA, 15, 2035-2045.
-
(2009)
RNA
, vol.15
, pp. 2035-2045
-
-
Chen, X.1
Denison, L.2
Levy, M.3
Ellington, A.D.4
-
14
-
-
58549088724
-
A flow cytometry-based screen for synthetic riboswitches
-
Lynch, S.A. and Gallivan, J.P. (2009) A flow cytometry-based screen for synthetic riboswitches. Nucleic Acids Res., 37, 184-192.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 184-192
-
-
Lynch, S.A.1
Gallivan, J.P.2
-
15
-
-
54349119816
-
A FACS-based approach to engineering artificial riboswitches
-
Fowler, C.C., Brown, E.D. and Li, Y. (2008) A FACS-based approach to engineering artificial riboswitches. Chembiochem: Eur. J. Chem. Biol, 9, 1906-1911.
-
(2008)
Chembiochem: Eur. J. Chem. Biol
, vol.9
, pp. 1906-1911
-
-
Fowler, C.C.1
Brown, E.D.2
Li, Y.3
-
16
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai, S.K. and Gallivan, J.P. (2004) Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc., 126, 13247-13254.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
17
-
-
38849129508
-
Random walks to synthetic riboswitches-A high-throughput selection based on cell motility
-
Topp, S. and Gallivan, J.P. (2008) Random walks to synthetic riboswitches-a high-throughput selection based on cell motility. Chembiochem: Eur. J. Chem. Biol., 9, 210-213.
-
(2008)
Chembiochem: Eur. J. Chem. Biol.
, vol.9
, pp. 210-213
-
-
Topp, S.1
Gallivan, J.P.2
-
18
-
-
34447099807
-
Dual selection of a genetic switch by a single selection marker
-
Nomura, Y. and Yokobayashi, Y. (2007) Dual selection of a genetic switch by a single selection marker. Biosystems, 90, 115-120.
-
(2007)
Biosystems
, vol.90
, pp. 115-120
-
-
Nomura, Y.1
Yokobayashi, Y.2
-
20
-
-
0028894022
-
Genetic dissection of thyroid hormone receptor beta: Identification of mutations that separate hormone binding and transcriptional activation
-
Uppaluri, R. and Towle, H.C. (1995) Genetic dissection of thyroid hormone receptor beta: identification of mutations that separate hormone binding and transcriptional activation. Mol. Cell. Biol., 15, 1499-1512.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1499-1512
-
-
Uppaluri, R.1
Towle, H.C.2
-
21
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner, N.C., Campbell, R.E., Steinbach, P.A., Giepmans, B.N., Palmer, A.E. and Tsien, R.Y. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol., 22, 1567-1572.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
Tsien, R.Y.6
-
22
-
-
0030798070
-
A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
-
Gari, E., Piedrafita, L., Aldea, M. and Herrero, E. (1997) A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast, 13, 837-848.
-
(1997)
Yeast
, vol.13
, pp. 837-848
-
-
Gari, E.1
Piedrafita, L.2
Aldea, M.3
Herrero, E.4
-
23
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski, R.S. and Hieter, P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics, 122, 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
24
-
-
0036270543
-
Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
-
Gietz, R.D. and Woods, R.A. (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol., 350, 87-96.
-
(2002)
Methods Enzymol.
, vol.350
, pp. 87-96
-
-
Gietz, R.D.1
Woods, R.A.2
-
25
-
-
34247176809
-
Isolating and engineering human antibodies using yeast surface display
-
Chao, G., Lau, W.L., Hackel, B.J., Sazinsky, S.L., Lippow, S.M. and Wittrup, K.D. (2006) Isolating and engineering human antibodies using yeast surface display. Nat. Protoc., 1, 755-768.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 755-768
-
-
Chao, G.1
Lau, W.L.2
Hackel, B.J.3
Sazinsky, S.L.4
Lippow, S.M.5
Wittrup, K.D.6
-
26
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz, M.B., Levine, A.J., Siggia, E.D. and Swain, P.S. (2002) Stochastic gene expression in a single cell. Science, 297, 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
27
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser, J.M. and O'Shea, E.K. (2004) Control of stochasticity in eukaryotic gene expression. Science, 304, 1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
28
-
-
0028224199
-
High-resolution molecular discrimination by RNA
-
Jenison, R.D., Gill, S.C., Pardi, A. and Polisky, B. (1994) High-resolution molecular discrimination by RNA. Science, 263, 1425-1429.
-
(1994)
Science
, vol.263
, pp. 1425-1429
-
-
Jenison, R.D.1
Gill, S.C.2
Pardi, A.3
Polisky, B.4
-
29
-
-
0030752211
-
Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA
-
Zimmermann, G.R., Jenison, R.D., Wick, C.L., Simorre, J.P. and Pardi, A. (1997) Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nat. Struct. Biol., 4, 644-649.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 644-649
-
-
Zimmermann, G.R.1
Jenison, R.D.2
Wick, C.L.3
Simorre, J.P.4
Pardi, A.5
-
30
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
Khvorova, A., Lescoute, A., Westhof, E. and Jayasena, S.D. (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat. Struct. Biol., 10, 708-712.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 708-712
-
-
Khvorova, A.1
Lescoute, A.2
Westhof, E.3
Jayasena, S.D.4
-
31
-
-
0026036451
-
Methods for measurement of intracellular magnesium: NMR and fluorescence
-
London, R.E. (1991) Methods for measurement of intracellular magnesium: NMR and fluorescence. Annu. Rev. Physiol., 53, 241-258.
-
(1991)
Annu. Rev. Physiol.
, vol.53
, pp. 241-258
-
-
London, R.E.1
-
32
-
-
4444297561
-
Fast cleavage kinetics of a natural hammerhead ribozyme
-
Canny, M.D., Jucker, F.M., Kellogg, E., Khvorova, A., Jayasena, S.D. and Pardi, A. (2004) Fast cleavage kinetics of a natural hammerhead ribozyme. J. Am. Chem. Soc., 126, 10848-10849.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 10848-10849
-
-
Canny, M.D.1
Jucker, F.M.2
Kellogg, E.3
Khvorova, A.4
Jayasena, S.D.5
Pardi, A.6
-
34
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
Win, M.N. and Smolke, C.D. (2008) Higher-order cellular information processing with synthetic RNA devices. Science, 322, 456-460.
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
35
-
-
42449084551
-
Selection of peptides interfering with a ribosomal frameshift in the human immunodeficiency virus type 1
-
Dulude, D, Theberge-Julien, G., Brakier-Gingras, L. and Heveker, N. (2008) Selection of peptides interfering with a ribosomal frameshift in the human immunodeficiency virus type 1. RNA, 14, 981-991.
-
(2008)
RNA
, vol.14
, pp. 981-991
-
-
Dulude, D.1
Theberge-Julien, G.2
Brakier-Gingras, L.3
Heveker, N.4
-
36
-
-
59649130342
-
Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: A loop-loop interaction motif conserved in most natural hammerheads
-
Dufour, D., de la Pena, M., Gago, S., Flores, R. and Gallego, J. (2009) Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads. Nucleic Acids Res., 37, 368-381.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 368-381
-
-
Dufour, D.1
De La Pena, M.2
Gago, S.3
Flores, R.4
Gallego, J.5
-
37
-
-
79953002042
-
Identification of hammerhead ribozymes in all domains of life reveals novel structural variations
-
Perreault, J., Weinberg, Z., Roth, A., Popescu, O., Chartrand, P., Ferbeyre, G. and Breaker, R.R. (2011) Identification of hammerhead ribozymes in all domains of life reveals novel structural variations. PLoS Comput. Biol., 7, e1002031.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Perreault, J.1
Weinberg, Z.2
Roth, A.3
Popescu, O.4
Chartrand, P.5
Ferbeyre, G.6
Breaker, R.R.7
-
38
-
-
78650501783
-
From alpaca to zebrafish: Hammerhead ribozymes wherever you look
-
Seehafer, C., Kalweit, A., Steger, G., Graf, S. and Hammann, C. (2011) From alpaca to zebrafish: hammerhead ribozymes wherever you look. RNA, 17, 21-26.
-
(2011)
RNA
, vol.17
, pp. 21-26
-
-
Seehafer, C.1
Kalweit, A.2
Steger, G.3
Graf, S.4
Hammann, C.5
-
39
-
-
66249084560
-
Design principles for riboswitch function
-
Beisel, C.L. and Smolke, C.D. (2009) Design principles for riboswitch function. PLoS Comput. Biol., 5, e1000363.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Beisel, C.L.1
Smolke, C.D.2
-
40
-
-
24644515752
-
Tuning genetic control through promoter engineering
-
Alper, H., Fischer, C., Nevoigt, E. and Stephanopoulos, G. (2005) Tuning genetic control through promoter engineering. Proc. Natl. Acad. Sci. USA, 102, 12678-12683.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 12678-12683
-
-
Alper, H.1
Fischer, C.2
Nevoigt, E.3
Stephanopoulos, G.4
-
41
-
-
33747376106
-
Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae
-
Nevoigt, E., Kohnke, J., Fischer, C.R., Alper, H., Stahl, U. and Stephanopoulos, G. (2006) Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae. Appl. Environ. Microbiol., 72, 5266-5273.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5266-5273
-
-
Nevoigt, E.1
Kohnke, J.2
Fischer, C.R.3
Alper, H.4
Stahl, U.5
Stephanopoulos, G.6
-
42
-
-
79952348850
-
A synthetic library of RNA control modules for predictable tuning of gene expression in yeast
-
Babiskin, A.H. and Smolke, C.D. (2011) A synthetic library of RNA control modules for predictable tuning of gene expression in yeast. Mol. Syst. Biol., 7, 471.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 471
-
-
Babiskin, A.H.1
Smolke, C.D.2
-
43
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
Mathews, D.H., Disney, M.D., Childs, J.L., Schroeder, S.J., Zuker, M. and Turner, D.H. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. USA, 101, 7287-7292.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
44
-
-
67650727366
-
VARNA: Interactive drawing and editing of the RNA secondary structure
-
Darty, K., Denise, A. and Ponty, Y. (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics, 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
45
-
-
0026771509
-
Numbering system for the hammerhead
-
Hertel, K.J., Pardi, A., Uhlenbeck, O.C., Koizumi, M., Ohtsuka, E., Uesugi, S., Cedergren, R., Eckstein, F., Gerlach, W.L., Hodgson, R. et al. (1992) Numbering system for the hammerhead. Nucleic Acids Res., 20, 3252.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3252
-
-
Hertel, K.J.1
Pardi, A.2
Uhlenbeck, O.C.3
Koizumi, M.4
Ohtsuka, E.5
Uesugi, S.6
Cedergren, R.7
Eckstein, F.8
Gerlach, W.L.9
Hodgson, R.10
|