메뉴 건너뛰기




Volumn 112, Issue 17, 2015, Pages 5383-5388

GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP

Author keywords

Bacterial signaling; CGAMP; Cyclic dinucleotides; Fluorescent biosensor; Gene regulation

Indexed keywords

APTAMER; CELL EXTRACT; CYCLIC AMP; CYCLIC GMP; RNA; BACTERIAL RNA; CYCLIC GUANOSINE MONOPHOSPHATE-ADENOSINE MONOPHOSPHATE; CYCLIC NUCLEOTIDE; RIBOSWITCH;

EID: 84928570713     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1419328112     Document Type: Article
Times cited : (107)

References (40)
  • 1
    • 0023090935 scopus 로고
    • Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid
    • Ross P, et al. (1987) Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325(6101):279-281.
    • (1987) Nature , vol.325 , Issue.6101 , pp. 279-281
    • Ross, P.1
  • 2
    • 84874914744 scopus 로고    scopus 로고
    • Cyclic di-GMP: the first 25 years of a universal bacterial second messenger
    • Römling U, Galperin MY, Gomelsky M (2013) Cyclic di-GMP: The first 25 years of a universal bacterial second messenger. Microbiol Mol Biol Rev 77(1):1-52.
    • (2013) Microbiol Mol Biol Rev , vol.77 , Issue.1 , pp. 1-52
    • Römling, U.1    Galperin, M.Y.2    Gomelsky, M.3
  • 3
    • 71449108155 scopus 로고    scopus 로고
    • Structural basis of ligand binding by a c-di-GMP riboswitch
    • Smith KD, et al. (2009) Structural basis of ligand binding by a c-di-GMP riboswitch. Nat Struct Mol Biol 16(12):1218-1223.
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.12 , pp. 1218-1223
    • Smith, K.D.1
  • 4
    • 71449123530 scopus 로고    scopus 로고
    • Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
    • Kulshina N, Baird NJ, Ferré-D'Amaré AR (2009) Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat Struct Mol Biol 16(12):1212-1217.
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.12 , pp. 1212-1217
    • Kulshina, N.1    Baird, N.J.2    Ferré-D'Amaré, A.R.3
  • 5
    • 84904731281 scopus 로고    scopus 로고
    • A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore
    • Huang H, et al. (2014) A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat Chem Biol 10(8):686-691.
    • (2014) Nat Chem Biol , vol.10 , Issue.8 , pp. 686-691
    • Huang, H.1
  • 6
    • 84905639191 scopus 로고    scopus 로고
    • Structural basis for activity of highly efficient RNA mimics of green fluorescent protein
    • Warner KD, et al. (2014) Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. Nat Struct Mol Biol 21(8):658-663.
    • (2014) Nat Struct Mol Biol , vol.21 , Issue.8 , pp. 658-663
    • Warner, K.D.1
  • 7
    • 43049087389 scopus 로고    scopus 로고
    • Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates
    • Witte G, Hartung S, Büttner K, Hopfner K-P (2008) Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates. Mol Cell 30(2):167-178.
    • (2008) Mol Cell , vol.30 , Issue.2 , pp. 167-178
    • Witte, G.1    Hartung, S.2    Büttner, K.3    Hopfner, K.-P.4
  • 8
    • 84859754930 scopus 로고    scopus 로고
    • Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence
    • Davies BW, Bogard RW, Young TS, Mekalanos JJ (2012) Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence. Cell 149(2):358-370.
    • (2012) Cell , vol.149 , Issue.2 , pp. 358-370
    • Davies, B.W.1    Bogard, R.W.2    Young, T.S.3    Mekalanos, J.J.4
  • 9
    • 84873724533 scopus 로고    scopus 로고
    • Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA
    • Wu J, et al. (2013) Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA. Science 339(6121):826-830.
    • (2013) Science , vol.339 , Issue.6121 , pp. 826-830
    • Wu, J.1
  • 10
    • 84878309796 scopus 로고    scopus 로고
    • Cyclic [G(2′, 5′)pA(3′,5′)p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase
    • Gao P, et al. (2013) Cyclic [G(2′, 5′)pA(3′,5′)p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell 153(5):1094-1107.
    • (2013) Cell , vol.153 , Issue.5 , pp. 1094-1107
    • Gao, P.1
  • 11
    • 84879385334 scopus 로고    scopus 로고
    • cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING
    • Ablasser A, et al. (2013) cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING. Nature 498(7454):380-384.
    • (2013) Nature , vol.498 , Issue.7454 , pp. 380-384
    • Ablasser, A.1
  • 12
    • 84878572947 scopus 로고    scopus 로고
    • The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING
    • Diner EJ, et al. (2013) The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING. Cell Reports 3(5):1355-1361.
    • (2013) Cell Reports , vol.3 , Issue.5 , pp. 1355-1361
    • Diner, E.J.1
  • 13
    • 84883425402 scopus 로고    scopus 로고
    • Cyclic dinucleotides and the innate immune response
    • Danilchanka O, Mekalanos JJ (2013) Cyclic dinucleotides and the innate immune response. Cell 154(5):962-970.
    • (2013) Cell , vol.154 , Issue.5 , pp. 962-970
    • Danilchanka, O.1    Mekalanos, J.J.2
  • 14
    • 84875784381 scopus 로고    scopus 로고
    • RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP
    • Kellenberger CA, Wilson SC, Sales-Lee J, Hammond MC (2013) RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. J Am Chem Soc 135(13):4906-4909.
    • (2013) J Am Chem Soc , vol.135 , Issue.13 , pp. 4906-4909
    • Kellenberger, C.A.1    Wilson, S.C.2    Sales-Lee, J.3    Hammond, M.C.4
  • 15
    • 47749152941 scopus 로고    scopus 로고
    • Riboswitches in eubacteria sense the second messenger cyclic di-GMP
    • Sudarsan N, et al. (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321(5887):411-413.
    • (2008) Science , vol.321 , Issue.5887 , pp. 411-413
    • Sudarsan, N.1
  • 16
    • 79960959180 scopus 로고    scopus 로고
    • RNA mimics of green fluorescent protein
    • Paige JS, Wu KY, Jaffrey SR (2011) RNA mimics of green fluorescent protein. Science 333(6042):642-646.
    • (2011) Science , vol.333 , Issue.6042 , pp. 642-646
    • Paige, J.S.1    Wu, K.Y.2    Jaffrey, S.R.3
  • 17
    • 84858030373 scopus 로고    scopus 로고
    • Fluorescence imaging of cellular metabolites with RNA
    • Paige JS, Nguyen-Duc T, Song W, Jaffrey SR (2012) Fluorescence imaging of cellular metabolites with RNA. Science 335(6073):1194.
    • (2012) Science , vol.335 , Issue.6073 , pp. 1194
    • Paige, J.S.1    Nguyen-Duc, T.2    Song, W.3    Jaffrey, S.R.4
  • 18
    • 77956021842 scopus 로고    scopus 로고
    • Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch
    • Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch. Biochemistry 49(34):7351-7359.
    • (2010) Biochemistry , vol.49 , Issue.34 , pp. 7351-7359
    • Smith, K.D.1    Lipchock, S.V.2    Livingston, A.L.3    Shanahan, C.A.4    Strobel, S.A.5
  • 19
    • 78049426911 scopus 로고    scopus 로고
    • Comparative genomics of cyclic-di-GMP signalling in bacteria: Post-translational regulation and catalytic activity
    • Seshasayee ASN, Fraser GM, Luscombe NM (2010) Comparative genomics of cyclic-di-GMP signalling in bacteria: Post-translational regulation and catalytic activity. Nucleic Acids Res 38(18):5970-5981.
    • (2010) Nucleic Acids Res , vol.38 , Issue.18 , pp. 5970-5981
    • Seshasayee, A.S.N.1    Fraser, G.M.2    Luscombe, N.M.3
  • 20
    • 84859807730 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis Rv3586 (DacA) is a diadenylate cyclase that converts ATP or ADP into c-di-AMP
    • Bai Y, et al. (2012) Mycobacterium tuberculosis Rv3586 (DacA) is a diadenylate cyclase that converts ATP or ADP into c-di-AMP. PLoS ONE 7(4):e35206.
    • (2012) PLoS ONE , vol.7 , Issue.4 , pp. e35206
    • Bai, Y.1
  • 21
    • 84887997976 scopus 로고    scopus 로고
    • Riboswitches in eubacteria sense the second messenger c-di-AMP
    • Nelson JW, et al. (2013) Riboswitches in eubacteria sense the second messenger c-di-AMP. Nat Chem Biol 9(12):834-839.
    • (2013) Nat Chem Biol , vol.9 , Issue.12 , pp. 834-839
    • Nelson, J.W.1
  • 22
    • 84928789631 scopus 로고    scopus 로고
    • Control of exoelectrogenesis in Geobacter spp. by c-AMP-GMP
    • Nelson JW, et al. (2014) Control of exoelectrogenesis in Geobacter spp. by c-AMP-GMP, Proc Natl Acad Sci USA 112:5389-5394.
    • (2014) Proc Natl Acad Sci USA , vol.112 , pp. 5389-5394
    • Nelson, J.W.1
  • 23
    • 0030977150 scopus 로고    scopus 로고
    • Bioremediation of metal contamination
    • Lovley DR, Coates JD (1997) Bioremediation of metal contamination. Curr Opin Biotechnol 8(3):285-289.
    • (1997) Curr Opin Biotechnol , vol.8 , Issue.3 , pp. 285-289
    • Lovley, D.R.1    Coates, J.D.2
  • 24
    • 57049119571 scopus 로고    scopus 로고
    • The microbe electric: Conversion of organic matter to electricity
    • Lovley DR (2008) The microbe electric: Conversion of organic matter to electricity. Curr Opin Biotechnol 19(6):564-571.
    • (2008) Curr Opin Biotechnol , vol.19 , Issue.6 , pp. 564-571
    • Lovley, D.R.1
  • 25
    • 33746072949 scopus 로고    scopus 로고
    • The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions
    • Ding Y-HR, et al. (2006) The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions. Biochim Biophys Acta 1764(7):1198-1206.
    • (2006) Biochim Biophys Acta , vol.1764 , Issue.7 , pp. 1198-1206
    • Ding, Y.-H.R.1
  • 26
    • 54549114308 scopus 로고    scopus 로고
    • Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor
    • Ding Y-HR, et al. (2008) Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor. Biochim Biophys Acta 1784(12):1935-1941.
    • (2008) Biochim Biophys Acta , vol.1784 , Issue.12 , pp. 1935-1941
    • Ding, Y.-H.R.1
  • 27
    • 78650778559 scopus 로고    scopus 로고
    • A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution
    • Tremblay P, et al. (2011) A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. Environ Microbiol 13(1):13-23.
    • (2011) Environ Microbiol , vol.13 , Issue.1 , pp. 13-23
    • Tremblay, P.1
  • 28
    • 29144451480 scopus 로고    scopus 로고
    • Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens
    • Mehta T, Coppi MV, Childers SE, Lovley DR (2005) Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens. Appl Environ Microbiol 71(12):8634-8641.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.12 , pp. 8634-8641
    • Mehta, T.1    Coppi, M.V.2    Childers, S.E.3    Lovley, D.R.4
  • 29
    • 84874772938 scopus 로고    scopus 로고
    • Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
    • Aklujkar M, et al. (2013) Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens. Microbiology 159(Pt 3):515-535.
    • (2013) Microbiology , vol.159 , Issue.3 , pp. 515-535
    • Aklujkar, M.1
  • 30
    • 77349123810 scopus 로고    scopus 로고
    • Evolution of electron transfer out of the cell: Comparative genomics of six Geobacter genomes
    • Butler JE, Young ND, Lovley DR (2010) Evolution of electron transfer out of the cell: Comparative genomics of six Geobacter genomes. BMC Genomics 11:40.
    • (2010) BMC Genomics , vol.11 , pp. 40
    • Butler, J.E.1    Young, N.D.2    Lovley, D.R.3
  • 31
    • 84880037294 scopus 로고    scopus 로고
    • Aromatic amino acids required for pili conductivity and long-range extracellular electron transport in Geobacter sulfurreducens
    • Vargas M, et al. (2013) Aromatic amino acids required for pili conductivity and long-range extracellular electron transport in Geobacter sulfurreducens. MBio 4(2):e00105-e00113.
    • (2013) MBio , vol.4 , Issue.2 , pp. e00105-e00113
    • Vargas, M.1
  • 32
    • 84876888195 scopus 로고    scopus 로고
    • Limitations for current production in Geobacter sulfurreducens biofilms
    • Bonanni PS, Bradley DF, Schrott GD, Busalman JP (2013) Limitations for current production in Geobacter sulfurreducens biofilms. ChemBusChem 6(4):711-20.
    • (2013) ChemBusChem , vol.6 , Issue.4 , pp. 711-720
    • Bonanni, P.S.1    Bradley, D.F.2    Schrott, G.D.3    Busalman, J.P.4
  • 34
    • 84874611408 scopus 로고    scopus 로고
    • Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function
    • Karns K, et al. (2013) Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function. J Am Chem Soc 135(8):3136-3143.
    • (2013) J Am Chem Soc , vol.135 , Issue.8 , pp. 3136-3143
    • Karns, K.1
  • 35
    • 65649092976 scopus 로고    scopus 로고
    • Biopython: Freely available Python tools for computational molecular biology and bioinformatics
    • Cock PJ, et al. (2009) Biopython: Freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11):1422-3.
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1422-1423
    • Cock, P.J.1
  • 36
    • 0003437302 scopus 로고    scopus 로고
    • Department of Genome Sciences, University of Washington, Seattle, Version 3.6
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) (Department of Genome Sciences, University of Washington, Seattle), Version 3.6.
    • (2005) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 37
    • 84902688021 scopus 로고    scopus 로고
    • A neutral pH thermal hydrolysis method for quantification of structured RNAs
    • Wilson SC, Cohen DT, Wang XC, Hammond MC (2014) A neutral pH thermal hydrolysis method for quantification of structured RNAs. RNA 20(7):1153-1160.
    • (2014) RNA , vol.20 , Issue.7 , pp. 1153-1160
    • Wilson, S.C.1    Cohen, D.T.2    Wang, X.C.3    Hammond, M.C.4
  • 38
    • 84897585709 scopus 로고    scopus 로고
    • In-line probing analysis of riboswitches
    • Regulski EE, Breaker RR (2008) In-line probing analysis of riboswitches. Methods Mol Biol 419:53-67.
    • (2008) Methods Mol Biol , vol.419 , pp. 53-67
    • Regulski, E.E.1    Breaker, R.R.2
  • 39
    • 0033171582 scopus 로고    scopus 로고
    • Reduction of (per)chlorate by a novel organism isolated from paper mill waste
    • Bruce RA, Achenbach LA, Coates JD (1999) Reduction of (per)chlorate by a novel organism isolated from paper mill waste. Environ Microbiol 1(4):319-329.
    • (1999) Environ Microbiol , vol.1 , Issue.4 , pp. 319-329
    • Bruce, R.A.1    Achenbach, L.A.2    Coates, J.D.3
  • 40
    • 77952580705 scopus 로고    scopus 로고
    • A liquid chromatographycoupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate
    • Spangler C, Böhm A, Jenal U, Seifert R, Kaever V (2010) A liquid chromatographycoupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate. J Microbiol Methods 81(3):226-231.
    • (2010) J Microbiol Methods , vol.81 , Issue.3 , pp. 226-231
    • Spangler, C.1    Böhm, A.2    Jenal, U.3    Seifert, R.4    Kaever, V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.