-
1
-
-
0034667663
-
Evaluation of the role of two conserved active-site residues in Beta class glutathione S-transferases
-
Allocati, N., Casalone, E., Masulli, M., Polekhina, G., Rossjohn, J., Parker, M. W., et al. (2000). Evaluation of the role of two conserved active-site residues in Beta class glutathione S-transferases. Biochem. J. 351, 341-346. doi: 10.1042/bj3510341
-
(2000)
Biochem. J.
, vol.351
, pp. 341-346
-
-
Allocati, N.1
Casalone, E.2
Masulli, M.3
Polekhina, G.4
Rossjohn, J.5
Parker, M.W.6
-
2
-
-
0038005094
-
Proteus mirabilis glutathione S-transferase B1-1 is involved in protective mechanisms against oxidative and chemical stresses
-
Allocati, N., Favaloro, B., Masulli, M., Alexeyev, M. F., and Di Ilio, C. (2003). Proteus mirabilis glutathione S-transferase B1-1 is involved in protective mechanisms against oxidative and chemical stresses. Biochem. J. 373, 305-311. doi: 10.1042/bj20030184
-
(2003)
Biochem. J.
, vol.373
, pp. 305-311
-
-
Allocati, N.1
Favaloro, B.2
Masulli, M.3
Alexeyev, M.F.4
Di Ilio, C.5
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1016/S0022-2836(05)80360-2
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
Anantharaman, V., Koonin, E. V., and Aravind, L. (2001). Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J. Mol. Biol. 307, 1271-1292. doi: 10.1006/jmbi.2001.4508
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
5
-
-
65549124495
-
-
Horizontal Gene Transfer: Genome in Flux, eds M. B. Gogarten, J. P. Gogarten, and L. C. Olendzenski (Totawa, NJ: Humana Press)
-
Andersson, J. O. (2009). "Horizontal Gene Transfer Between Microbial Eukaryotes," in Horizontal Gene Transfer: Genome in Flux, eds M. B. Gogarten, J. P. Gogarten, and L. C. Olendzenski (Totawa, NJ: Humana Press), 473-487.
-
(2009)
Horizontal Gene Transfer Between Microbial Eukaryotes
, pp. 473-487
-
-
Andersson, J.O.1
-
7
-
-
0043140343
-
Adaptation to salt stress in a salt-tolerant strain of the yeast Yarrowia lipolytica
-
Andreishcheva, E. N., Isakova, E. P., Sidorov, N. N., Abramova, N. B., Ushakova, N. A., Shaposhnikov, G. L., et al. (1999). Adaptation to salt stress in a salt-tolerant strain of the yeast Yarrowia lipolytica. Biochemistry 64, 1061-1067.
-
(1999)
Biochemistry
, vol.64
, pp. 1061-1067
-
-
Andreishcheva, E.N.1
Isakova, E.P.2
Sidorov, N.N.3
Abramova, N.B.4
Ushakova, N.A.5
Shaposhnikov, G.L.6
-
8
-
-
0036601353
-
Trends in protein evolution inferred from sequence and structure analysis
-
Aravind, L., Mazumder, R., Vasudevan, S., and Koonin, E. V. (2002). Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struct. Biol. 12, 392-399. doi: 10.1016/S0959-440X(02)00334-2
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 392-399
-
-
Aravind, L.1
Mazumder, R.2
Vasudevan, S.3
Koonin, E.V.4
-
9
-
-
2942566606
-
Structure, function and evolution of microbial adenylyl and guanylyl cyclases
-
Baker, D. A., and Kelly, J. M. (2004). Structure, function and evolution of microbial adenylyl and guanylyl cyclases. Mol. Microbiol. 52, 1229-1242. doi: 10.1111/j.1365-2958.2004.04067.x
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 1229-1242
-
-
Baker, D.A.1
Kelly, J.M.2
-
10
-
-
84937231106
-
Plant MYB transcription factors: their role in drought response mechanisms
-
Baldoni, E., Genga, A., and Cominelli, E. (2015). Plant MYB transcription factors: their role in drought response mechanisms. Int. J. Mol. Sci. 16, 15811-15851. doi: 10.3390/ijms160715811
-
(2015)
Int. J. Mol. Sci.
, vol.16
, pp. 15811-15851
-
-
Baldoni, E.1
Genga, A.2
Cominelli, E.3
-
11
-
-
84907999643
-
The solubility of oxygen and ozone in liquids
-
Battino, R., Rettich, T. R., and Tominaga, T. (1983). The solubility of oxygen and ozone in liquids. J. Phys. Chem. Ref. Data 12, 163-178. doi: 10.1063/1.555680
-
(1983)
J. Phys. Chem. Ref. Data
, vol.12
, pp. 163-178
-
-
Battino, R.1
Rettich, T.R.2
Tominaga, T.3
-
12
-
-
85019705921
-
Rates of evolution under extreme and mesophilic conditions
-
ed C. Bakermans (Berlin: Walter de Gruyter),
-
Battistuzzi, F. U., and Brown, A. (2015). "Rates of evolution under extreme and mesophilic conditions," in Microbial Evolution under Extreme Conditions, ed C. Bakermans (Berlin: Walter de Gruyter), 247-268.
-
(2015)
Microbial Evolution under Extreme Conditions
, pp. 247-268
-
-
Battistuzzi, F.U.1
Brown, A.2
-
13
-
-
0034789483
-
Influence of the fluidity of the membrane on the response of microorganisms to environmental stresses
-
Beney, L., and Gervais, P. (2001). Influence of the fluidity of the membrane on the response of microorganisms to environmental stresses. Appl. Microbiol. Biotechnol. 57, 34-42. doi: 10.1007/s002530100754
-
(2001)
Appl. Microbiol. Biotechnol.
, vol.57
, pp. 34-42
-
-
Beney, L.1
Gervais, P.2
-
15
-
-
0034193445
-
Sodium transport in plant cells
-
Blumwald, E., Aharon, G. S., and Apse, M. P. (2000). Sodium transport in plant cells. Biochim. Biophys. Acta Biomembr. 1465, 140-151. doi: 10.1016/S0005-2736(00)00135-8
-
(2000)
Biochim. Biophys. Acta Biomembr.
, vol.1465
, pp. 140-151
-
-
Blumwald, E.1
Aharon, G.S.2
Apse, M.P.3
-
16
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger, A. M., Lohse, M., and Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120. doi: 10.1093/bioinformatics/btu170
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
17
-
-
0015966621
-
Salt relations of marine and halophilic species of unicellular green alga Dunaliella: role of glycerol as a compatible solute
-
Borowitzka, L. J., and Brown, A. D. (1974). Salt relations of marine and halophilic species of unicellular green alga Dunaliella: role of glycerol as a compatible solute. Arch. Microbiol. 96, 37-52. doi: 10.1007/BF00590161
-
(1974)
Arch. Microbiol.
, vol.96
, pp. 37-52
-
-
Borowitzka, L.J.1
Brown, A.D.2
-
18
-
-
34648833677
-
Plutonium(IV) reduction by the metal-reducing bacteria Geobacter metallireducens GS15 and Shewanella oneidensis MR1
-
Boukhalfa, H., Icopini, G. A., Reilly, S. D., and Neu, M. P. (2007). Plutonium(IV) reduction by the metal-reducing bacteria Geobacter metallireducens GS15 and Shewanella oneidensis MR1. Appl. Environ. Microbiol. 73, 5897-5903. doi: 10.1128/AEM.00747-07
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5897-5903
-
-
Boukhalfa, H.1
Icopini, G.A.2
Reilly, S.D.3
Neu, M.P.4
-
19
-
-
0032548807
-
Site-directed mutagenesis of the Proteus mirabilis glutathione transferase B1-1 G-site
-
Casalone, E., Allocati, N., Ceccarelli, I., Masulli, M., Rossjohn, J., Parker, M. W., et al. (1998). Site-directed mutagenesis of the Proteus mirabilis glutathione transferase B1-1 G-site. FEBS Lett. 423, 122-124. doi: 10.1016/S0014-5793(98)00080-5
-
(1998)
FEBS Lett.
, vol.423
, pp. 122-124
-
-
Casalone, E.1
Allocati, N.2
Ceccarelli, I.3
Masulli, M.4
Rossjohn, J.5
Parker, M.W.6
-
20
-
-
81255135974
-
Cloning of a novel glutathione S-transferase 3 (GST3) gene and expression analysis in pearl oyster, Pinctada martensii
-
Chen, J., Xiao, S., Deng, Y., Du, X., and Ye, Z. (2011). Cloning of a novel glutathione S-transferase 3 (GST3) gene and expression analysis in pearl oyster, Pinctada martensii. Fish Shellfish Immunol. 31, 823-830. doi: 10.1016/j.fsi.2011.07.023
-
(2011)
Fish Shellfish Immunol.
, vol.31
, pp. 823-830
-
-
Chen, J.1
Xiao, S.2
Deng, Y.3
Du, X.4
Ye, Z.5
-
21
-
-
36248951053
-
Biosynthesis of phytosterol esters: identification of a sterol O-acyltransferase in Arabidopsis
-
Chen, Q., Steinhauer, L., Hammerlindl, J., Keller, W., and Zou, J. (2007). Biosynthesis of phytosterol esters: identification of a sterol O-acyltransferase in Arabidopsis. Plant Physiol. 145, 974-984. doi: 10.1104/pp.107.106278
-
(2007)
Plant Physiol.
, vol.145
, pp. 974-984
-
-
Chen, Q.1
Steinhauer, L.2
Hammerlindl, J.3
Keller, W.4
Zou, J.5
-
22
-
-
54249105870
-
Morphology and molecular phylogeny of Trimyema koreanum n
-
Cho, B. C., Park, J. S., Xu, K. D., and Choi, J. K. (2008). Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern. J. Eukaryot. Microbiol. 55, 417-426. doi: 10.1111/j.1550-7408.2008.00340.x
-
(2008)
sp., a ciliate from the hypersaline water of a solar saltern. J. Eukaryot. Microbiol.
, vol.55
, pp. 417-426
-
-
Cho, B.C.1
Park, J.S.2
Xu, K.D.3
Choi, J.K.4
-
23
-
-
0031945918
-
Crystal structure of a novel human peroxidase enzyme at 2.0 angstrom resolution
-
Choi, H. J., Kang, S. W., Yang, C. H., Rhee, S. G., and Ryu, S. E. (1998). Crystal structure of a novel human peroxidase enzyme at 2.0 angstrom resolution. Nat. Struct. Biol. 5, 400-406. doi: 10.1038/nsb0598-400
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 400-406
-
-
Choi, H.J.1
Kang, S.W.2
Yang, C.H.3
Rhee, S.G.4
Ryu, S.E.5
-
24
-
-
58049088157
-
Oxidant stress stimulates expression of the human peroxiredoxin 6 gene by a transcriptional mechanism involving an antioxidant response element
-
Chowdhury, I., Mo, Y., Gao, L., Kazi, A., Fisher, A. B., and Feinstein, S. I. (2009). Oxidant stress stimulates expression of the human peroxiredoxin 6 gene by a transcriptional mechanism involving an antioxidant response element. Free Radic. Biol. Med. 46, 146-153. doi: 10.1016/j.freeradbiomed.2008.09.027
-
(2009)
Free Radic. Biol. Med.
, vol.46
, pp. 146-153
-
-
Chowdhury, I.1
Mo, Y.2
Gao, L.3
Kazi, A.4
Fisher, A.B.5
Feinstein, S.I.6
-
25
-
-
33847335459
-
A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans
-
Chun, C. D., Liu, O. W., and Madhani, H. D. (2007). A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans. PLoS Pathog. 3:e22. doi: 10.1371/journal.ppat.0030022
-
(2007)
PLoS Pathog.
, vol.3
-
-
Chun, C.D.1
Liu, O.W.2
Madhani, H.D.3
-
26
-
-
0029915525
-
Computational method to predict mitochondrially imported proteins and their targeting sequences
-
Claros, M. G., and Vincens, P. (1996). Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur. J. Biochem. 241, 779-786. doi: 10.1111/j.1432-1033.1996.00779.x
-
(1996)
Eur. J. Biochem.
, vol.241
, pp. 779-786
-
-
Claros, M.G.1
Vincens, P.2
-
27
-
-
0038266122
-
Role of yeast glutaredoxins as glutathione S-transferases
-
Collinson, E. J., and Grant, C. M. (2003). Role of yeast glutaredoxins as glutathione S-transferases. J. Biol. Chem. 278, 22492-22497. doi: 10.1074/jbc.M301387200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 22492-22497
-
-
Collinson, E.J.1
Grant, C.M.2
-
28
-
-
0037053371
-
The yeast glutaredoxins are active as glutathione peroxidases
-
Collinson, E. J., Wheeler, G. L., Garrido, E. O., Avery, A. M., Avery, S. V., and Grant, C. M. (2002). The yeast glutaredoxins are active as glutathione peroxidases. J. Biol. Chem. 277, 16712-16717. doi: 10.1074/jbc.M111686200
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 16712-16717
-
-
Collinson, E.J.1
Wheeler, G.L.2
Garrido, E.O.3
Avery, A.M.4
Avery, S.V.5
Grant, C.M.6
-
29
-
-
0032538624
-
Regulation of adenylyl cyclase by membrane potential
-
Cooper, D. M. F., Schell, M. J., Thorn, P., and Irvine, R. F. (1998). Regulation of adenylyl cyclase by membrane potential. J. Biol. Chem. 273, 27703-27707. doi: 10.1074/jbc.273.42.27703
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 27703-27707
-
-
Cooper, D.M.F.1
Schell, M.J.2
Thorn, P.3
Irvine, R.F.4
-
30
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo, A., and Gribaldo, S. (2010). BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol. Biol. 10:210. doi: 10.1186/1471-2148-10-210
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
31
-
-
0348049809
-
Fructosamine 3-kinase, an enzyme involved in protein deglycation
-
Delpierre, G., and Van Schaftingen, E. (2003). Fructosamine 3-kinase, an enzyme involved in protein deglycation. Biochem. Soc. Trans. 31, 1354-1357. doi: 10.1042/bst0311354
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1354-1357
-
-
Delpierre, G.1
Van Schaftingen, E.2
-
32
-
-
0017192580
-
The function of sterols in membranes
-
Demel, R. A., and De Kruyff, B. (1976). The function of sterols in membranes. Biochim. Biophys. Acta 457, 109-132. doi: 10.1016/0304-4157(76)90008-3
-
(1976)
Biochim. Biophys. Acta
, vol.457
, pp. 109-132
-
-
Demel, R.A.1
De Kruyff, B.2
-
33
-
-
84940655404
-
Ethylene responsive factors in the orchestration of stress responses in monocotyledonous plants
-
Dey, S., and Vlot, A. C. (2015). Ethylene responsive factors in the orchestration of stress responses in monocotyledonous plants. Front. Plant Sci. 6:640. doi: 10.3389/fpls.2015.00640
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 640
-
-
Dey, S.1
Vlot, A.C.2
-
34
-
-
0034647887
-
Size-dependent disaggregation of stable protein aggregates by the DnaK chaperone machinery
-
Diamant, S., Ben-Zvi, A. P., Bukau, B., and Goloubinoff, P. (2000). Size-dependent disaggregation of stable protein aggregates by the DnaK chaperone machinery. J. Biol. Chem. 275, 21107-21113. doi: 10.1074/jbc.M001293200
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 21107-21113
-
-
Diamant, S.1
Ben-Zvi, A.P.2
Bukau, B.3
Goloubinoff, P.4
-
35
-
-
84928798073
-
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance
-
Diray-Arce, J., Clement, M., Gul, B., Khan, M. A., and Nielsen, B. L. (2015). Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance. BMC Genomics 16:353. doi: 10.1186/s12864-015-1553-x
-
(2015)
BMC Genomics
, vol.16
, pp. 353
-
-
Diray-Arce, J.1
Clement, M.2
Gul, B.3
Khan, M.A.4
Nielsen, B.L.5
-
36
-
-
0028883178
-
Phospholipid signaling
-
Divecha, N., and Irvine, R. F. (1995). Phospholipid signaling. Cell 80, 269-278. doi: 10.1016/0092-8674(95)90409-3
-
(1995)
Cell
, vol.80
, pp. 269-278
-
-
Divecha, N.1
Irvine, R.F.2
-
37
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. R. (1998). Profile hidden Markov models. Bioinformatics 14, 755-763. doi: 10.1093/bioinformatics/14.9.755
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
38
-
-
0343742639
-
Binding of non-native protein to Hsp25 during heat shock creates a reservoir of folding intermediates for reactivation
-
Ehrnsperger, M., Gräber, S., Gaestel, M., and Buchner, J. (1997). Binding of non-native protein to Hsp25 during heat shock creates a reservoir of folding intermediates for reactivation. EMBO J. 16, 221-229. doi: 10.1093/emboj/16.2.221
-
(1997)
EMBO J.
, vol.16
, pp. 221-229
-
-
Ehrnsperger, M.1
Gräber, S.2
Gaestel, M.3
Buchner, J.4
-
39
-
-
18344395923
-
The genome of the social amoeba Dictyostelium discoideum
-
Eichinger, L., Pachebat, J. A., Glockner, G., Rajandream, M. A., Sucgang, R., Berriman, M., et al. (2005). The genome of the social amoeba Dictyostelium discoideum. Nature 435, 43-57. doi: 10.1038/nature03481
-
(2005)
Nature
, vol.435
, pp. 43-57
-
-
Eichinger, L.1
Pachebat, J.A.2
Glockner, G.3
Rajandream, M.A.4
Sucgang, R.5
Berriman, M.6
-
40
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson, O., Nielsen, H., Brunak, S., and von Heijne, G. (2000). Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 1005-1016. doi: 10.1006/jmbi.2000.3903
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
von Heijne, G.4
-
41
-
-
85014108492
-
Lateral gene transfer in the adaptation of the anaerobic parasite Blastocystis to the gut
-
Eme, L., Gentekaki, E., Curtis, B., Archibald, J. M., and Roger, A. J. (2017). Lateral gene transfer in the adaptation of the anaerobic parasite Blastocystis to the gut. Curr. Biol. 27, 807-820. doi: 10.1016/j.cub.2017.02.003
-
(2017)
Curr. Biol.
, vol.27
, pp. 807-820
-
-
Eme, L.1
Gentekaki, E.2
Curtis, B.3
Archibald, J.M.4
Roger, A.J.5
-
42
-
-
0034163363
-
Modulation of the glutathione S-transferase in Ochrobactrum anthropi: function of xenobiotic substrates and other forms of stress
-
Favaloro, B., Tamburro, A., Trofino, M. A., Bologna, L., Rotilio, D., and Heipieper, H. J. (2000). Modulation of the glutathione S-transferase in Ochrobactrum anthropi: function of xenobiotic substrates and other forms of stress. Biochem. J. 346, 553-559. doi: 10.1042/bj3460553
-
(2000)
Biochem. J.
, vol.346
, pp. 553-559
-
-
Favaloro, B.1
Tamburro, A.2
Trofino, M.A.3
Bologna, L.4
Rotilio, D.5
Heipieper, H.J.6
-
43
-
-
34247170780
-
Role of Ser11 in the stabilization of the structure of Ochrobactrum anthropi glutathione transferase
-
Federici, L., Masulli, M., Bonivento, D., Di Matteo, A., Gianni, S., Favaloro, B., et al. (2007). Role of Ser11 in the stabilization of the structure of Ochrobactrum anthropi glutathione transferase. Biochem. J. 403, 267-274. doi: 10.1042/BJ20061707
-
(2007)
Biochem. J.
, vol.403
, pp. 267-274
-
-
Federici, L.1
Masulli, M.2
Bonivento, D.3
Di Matteo, A.4
Gianni, S.5
Favaloro, B.6
-
44
-
-
64049098665
-
A conserved hydrogen-bond network stabilizes the structure of Beta class glutathione S-transferases
-
Federici, L., Masulli, M., Gianni, S., Di Ilio, C., and Allocati, N. (2009). A conserved hydrogen-bond network stabilizes the structure of Beta class glutathione S-transferases. Biochem. Biophys. Res. Commun. 382, 525-529. doi: 10.1016/j.bbrc.2009.03.052
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.382
, pp. 525-529
-
-
Federici, L.1
Masulli, M.2
Gianni, S.3
Di Ilio, C.4
Allocati, N.5
-
45
-
-
44649119816
-
Transcriptional targets of sirtuins in the coordination of mammalian physiology
-
Feige, J. N., and Auwerx, J. (2008). Transcriptional targets of sirtuins in the coordination of mammalian physiology. Curr. Opin. Cell Biol. 20, 303-309. doi: 10.1016/j.ceb.2008.03.012
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 303-309
-
-
Feige, J.N.1
Auwerx, J.2
-
46
-
-
84941191175
-
Misexpression of the Niemann-Pick disease type C1 (NPC1)-like protein in Arabidopsis causes sphingolipid accumulation and reproductive defects
-
Feldman, M. J., Poirier, B. C., and Lange, B. M. (2015). Misexpression of the Niemann-Pick disease type C1 (NPC1)-like protein in Arabidopsis causes sphingolipid accumulation and reproductive defects. Planta 242, 921-933. doi: 10.1007/s00425-015-2322-4
-
(2015)
Planta
, vol.242
, pp. 921-933
-
-
Feldman, M.J.1
Poirier, B.C.2
Lange, B.M.3
-
47
-
-
84976865403
-
The Pfam protein families database: towards a more sustainable future
-
Finn, R. D., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Mistry, J., Mitchell, A. L., et al. (2016). The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44, D279-D285. doi: 10.1093/nar/gkv1344
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D279-D285
-
-
Finn, R.D.1
Coggill, P.2
Eberhardt, R.Y.3
Eddy, S.R.4
Mistry, J.5
Mitchell, A.L.6
-
48
-
-
79953249112
-
Peroxiredoxin 6: a bifunctional enzyme with glutathione peroxidase and phospholipase A2 activities
-
Fisher, A. B. (2011). Peroxiredoxin 6: a bifunctional enzyme with glutathione peroxidase and phospholipase A2 activities. Antioxid. Redox Signal. 15, 831-844. doi: 10.1089/ars.2010.3412
-
(2011)
Antioxid. Redox Signal.
, vol.15
, pp. 831-844
-
-
Fisher, A.B.1
-
49
-
-
84898056889
-
Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov
-
Foissner, W., Jung, J.-H., Filker, S., Rudolph, J., and Stoeck, T. (2014). Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern. Eur. J. Protistol. 50, 174-184. doi: 10.1016/j.ejop.2013.10.001
-
(2014)
spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern. Eur. J. Protistol.
, vol.50
, pp. 174-184
-
-
Foissner, W.1
Jung, J.-H.2
Filker, S.3
Rudolph, J.4
Stoeck, T.5
-
50
-
-
34447503350
-
An intracellular P2X receptor required for osmoregulation in Dictyostelium discoideum
-
Fountain, S. J., Parkinson, K., Young, M. T., Cao, L., Thompson, C. R. L., and North, R. A. (2007). An intracellular P2X receptor required for osmoregulation in Dictyostelium discoideum. Nature 448, 200-203. doi: 10.1038/nature05926
-
(2007)
Nature
, vol.448
, pp. 200-203
-
-
Fountain, S.J.1
Parkinson, K.2
Young, M.T.3
Cao, L.4
Thompson, C.R.L.5
North, R.A.6
-
51
-
-
0030010138
-
Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin
-
Frolow, F., Harel, M., Sussman, J. L., Mevarech, M., and Shoham, M. (1996). Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin. Nat. Struct. Biol. 3, 452-458. doi: 10.1038/nsb0596-452
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 452-458
-
-
Frolow, F.1
Harel, M.2
Sussman, J.L.3
Mevarech, M.4
Shoham, M.5
-
52
-
-
0028783450
-
Osmoadaptation in bacteria
-
Galinski, E. A. (1995). Osmoadaptation in bacteria. Adv. Microb. Physiol. 37, 272-328. doi: 10.1016/s0065-2911(08)60148-4
-
(1995)
Adv. Microb. Physiol.
, vol.37
, pp. 272-328
-
-
Galinski, E.A.1
-
53
-
-
0031810473
-
The phylogeny of unicellular, extremely halotolerant cyanobacteria
-
Garcia-Pichel, F., Nübel, U., and Muyzer, G. (1998). The phylogeny of unicellular, extremely halotolerant cyanobacteria. Arch. Microbiol. 169, 469-482. doi: 10.1007/s002030050599
-
(1998)
Arch. Microbiol.
, vol.169
, pp. 469-482
-
-
Garcia-Pichel, F.1
Nübel, U.2
Muyzer, G.3
-
54
-
-
0017581329
-
Occurrence of facultative anoxygenic photosynthesis among filamentous and unicellular cyanobacteria
-
Garlick, S., Oren, A., and Padan, E. (1977). Occurrence of facultative anoxygenic photosynthesis among filamentous and unicellular cyanobacteria. J. Bacteriol. 129, 623-629.
-
(1977)
J. Bacteriol.
, vol.129
, pp. 623-629
-
-
Garlick, S.1
Oren, A.2
Padan, E.3
-
55
-
-
0016724632
-
Isolation and characterization of Actinopolyspora halophila, gen
-
Gochnauer, M. B., Leppard, G. G., Komaratat, P., Kates, M., Novitsky, T., and Kushner, D. J. (1975). Isolation and characterization of Actinopolyspora halophila, gen. et sp. nov., an extremely halophilic actinomycete. Can. J. Microbiol. 21, 1500-1511. doi: 10.1139/m75-222
-
(1975)
et sp. nov., an extremely halophilic actinomycete. Can. J. Microbiol.
, vol.21
, pp. 1500-1511
-
-
Gochnauer, M.B.1
Leppard, G.G.2
Komaratat, P.3
Kates, M.4
Novitsky, T.5
Kushner, D.J.6
-
56
-
-
0033598703
-
Sequential mechanism of solubilization and refolding of stable protein aggregates by a bichaperone network
-
Goloubinoff, P., Mogk, A., Ben Zvi, A. P., Tomoyasu, T., and Bukau, B. (1999). Sequential mechanism of solubilization and refolding of stable protein aggregates by a bichaperone network. Proc. Natl. Acad. Sci. U.S.A. 96, 13732-13737. doi: 10.1073/pnas.96.24.13732
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13732-13737
-
-
Goloubinoff, P.1
Mogk, A.2
Ben Zvi, A.P.3
Tomoyasu, T.4
Bukau, B.5
-
57
-
-
33750814308
-
Identification and characterization of ENA ATPases HwENA1 and HwENA2 from the halophilic black yeast Hortaea werneckii
-
Gorjan, A., and Plemenitaš, A. (2006). Identification and characterization of ENA ATPases HwENA1 and HwENA2 from the halophilic black yeast Hortaea werneckii. FEMS Microbiol. Lett. 265, 41-50. doi: 10.1111/j.1574-6968.2006.00473.x
-
(2006)
FEMS Microbiol. Lett.
, vol.265
, pp. 41-50
-
-
Gorjan, A.1
Plemenitaš, A.2
-
58
-
-
0030473721
-
Antioxidant response to NaCl stress in a control and an NaCl-tolerant cotton cell line grown in the presence of paraquat, buthionine sulfoximine, and exogenous glutathione
-
Gossett, D. R., Banks, S. W., Millhollon, E. P., and Lucas, M. C. (1996). Antioxidant response to NaCl stress in a control and an NaCl-tolerant cotton cell line grown in the presence of paraquat, buthionine sulfoximine, and exogenous glutathione. Plant Physiol. 112, 803-809. doi: 10.1104/pp.112.2.803
-
(1996)
Plant Physiol.
, vol.112
, pp. 803-809
-
-
Gossett, D.R.1
Banks, S.W.2
Millhollon, E.P.3
Lucas, M.C.4
-
59
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., et al. (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652. doi: 10.1038/nbt.1883
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
-
60
-
-
0031449067
-
Salt and oxidative stress: similar and specific responses and their relation to salt tolerance in Citrus
-
Gueta-Dahan, Y., Yaniv, Z., Zilinskas, B. A., and Ben-Hayyim, G. (1997). Salt and oxidative stress: similar and specific responses and their relation to salt tolerance in Citrus. Planta 203, 460-469. doi: 10.1007/s004250050215
-
(1997)
Planta
, vol.203
, pp. 460-469
-
-
Gueta-Dahan, Y.1
Yaniv, Z.2
Zilinskas, B.A.3
Ben-Hayyim, G.4
-
61
-
-
0037249633
-
The TIGRFAMs database of protein families
-
Haft, D. H., Selengut, J. D., and White, O. (2003). The TIGRFAMs database of protein families. Nucleic Acids Res. 31, 371-373. doi: 10.1093/nar/gkg128
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 371-373
-
-
Haft, D.H.1
Selengut, J.D.2
White, O.3
-
62
-
-
85015647587
-
Osmoadaptative strategy and its molecular signature in obligately halophilic heterotrophic protists
-
Harding, T., Brown, M. W., Simpson, A. G. B., and Roger, A. J. (2016). Osmoadaptative strategy and its molecular signature in obligately halophilic heterotrophic protists. Genome Biol. Evol. 8, 2241-2258. doi: 10.1093/gbe/evw152
-
(2016)
Genome Biol. Evol.
, vol.8
, pp. 2241-2258
-
-
Harding, T.1
Brown, M.W.2
Simpson, A.G.B.3
Roger, A.J.4
-
63
-
-
0019878604
-
Hexagonal phases in phospholipids with saturated chains: phosphatidylethanolamines and phosphatidic acids
-
Harlos, K., and Eibl, H. (1981). Hexagonal phases in phospholipids with saturated chains: phosphatidylethanolamines and phosphatidic acids. Biochemistry 20, 2888-2892. doi: 10.1021/bi00513a027
-
(1981)
Biochemistry
, vol.20
, pp. 2888-2892
-
-
Harlos, K.1
Eibl, H.2
-
64
-
-
42949116727
-
Heterotrophic protozoa from hypersaline environments
-
Bacteria, and Eukarya, eds N. Gunde-Cimerman, A. Oren, and A. Plemenitaš (Dordrecht: Springer),
-
Hauer, G., and Rogerson, A. (2005). "Heterotrophic protozoa from hypersaline environments," in Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya, eds N. Gunde-Cimerman, A. Oren, and A. Plemenitaš (Dordrecht: Springer), 519-539.
-
(2005)
Adaptation to Life at High Salt Concentrations in Archaea
, pp. 519-539
-
-
Hauer, G.1
Rogerson, A.2
-
65
-
-
0038075998
-
Conserved arginine and aspartate residues are critical for function of MjNhaP1, a Na+/H+ antiporter of M
-
Hellmer, J., Teubner, A., and Zeilinger, C. (2003). Conserved arginine and aspartate residues are critical for function of MjNhaP1, a Na+/H+ antiporter of M. jannaschii. FEBS Lett. 542, 32-36. doi: 10.1016/S0014-5793(03)00332-6
-
(2003)
jannaschii. FEBS Lett.
, vol.542
, pp. 32-36
-
-
Hellmer, J.1
Teubner, A.2
Zeilinger, C.3
-
66
-
-
18744424713
-
Tolerance of pea (Pisum sativum L.) to long-term salt stress is associated with induction of antioxidant defences
-
Hernández, J. A., Jimenez, A., Mullineaux, P., and Sevilla, F. (2000). Tolerance of pea (Pisum sativum L.) to long-term salt stress is associated with induction of antioxidant defences. Plant Cell Environ. 23, 853-862. doi: 10.1046/j.1365-3040.2000.00602.x
-
(2000)
Plant Cell Environ.
, vol.23
, pp. 853-862
-
-
Hernández, J.A.1
Jimenez, A.2
Mullineaux, P.3
Sevilla, F.4
-
67
-
-
0029140882
-
Salt-induced oxidative stress in chloroplasts of pea plants
-
Hernández, J. A., Olmos, E., Corpas, F. J., Sevilla, F., and Del Río, L. A. (1995). Salt-induced oxidative stress in chloroplasts of pea plants. Plant Sci. 105, 151-167. doi: 10.1016/0168-9452(94)04047-8
-
(1995)
Plant Sci.
, vol.105
, pp. 151-167
-
-
Hernández, J.A.1
Olmos, E.2
Corpas, F.J.3
Sevilla, F.4
Del Río, L.A.5
-
68
-
-
0040187666
-
The AhpC and AhpD antioxidant defense system of Mycobacterium tuberculosis
-
Hillas, P. J., del Alba, F. S., Oyarzabal, J., Wilks, A., and de Montellano, P. R. O. (2000). The AhpC and AhpD antioxidant defense system of Mycobacterium tuberculosis. J. Biol. Chem. 275, 18801-18809. doi: 10.1074/jbc.M001001200
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 18801-18809
-
-
Hillas, P.J.1
del Alba, F.S.2
Oyarzabal, J.3
Wilks, A.4
de Montellano, P.R.O.5
-
69
-
-
84864395066
-
Mapping the road to recovery: the ClpB/Hsp104 molecular chaperone
-
Hodson, S., Marshall, J. J. T., and Burston, S. G. (2012). Mapping the road to recovery: the ClpB/Hsp104 molecular chaperone. J. Struct. Biol. 179, 161-171. doi: 10.1016/j.jsb.2012.05.015
-
(2012)
J. Struct. Biol.
, vol.179
, pp. 161-171
-
-
Hodson, S.1
Marshall, J.J.T.2
Burston, S.G.3
-
70
-
-
17644401005
-
SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast
-
Hughes, A. L., Todd, B. L., and Espenshade, P. J. (2005). SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120, 831-842. doi: 10.1016/j.cell.2005.01.012
-
(2005)
Cell
, vol.120
, pp. 831-842
-
-
Hughes, A.L.1
Todd, B.L.2
Espenshade, P.J.3
-
71
-
-
0347938429
-
Effects of Cys10 mutation to Ala in glutathione transferase from Escherichia coli
-
Inoue, H., Nishida, M., and Takahashi, K. (2000). Effects of Cys10 mutation to Ala in glutathione transferase from Escherichia coli. J. Organomet. Chem. 611, 593-595. doi: 10.1016/S0022-328X(00)00395-8
-
(2000)
J. Organomet. Chem.
, vol.611
, pp. 593-595
-
-
Inoue, H.1
Nishida, M.2
Takahashi, K.3
-
72
-
-
0030923439
-
Identification and characterization of a novel microsomal enzyme with glutathione-dependent transferase and peroxidase activities
-
Jakobsson, P. J., Mancini, J. A., Riendeau, D., and FordHutchinson, A. W. (1997). Identification and characterization of a novel microsomal enzyme with glutathione-dependent transferase and peroxidase activities. J. Biol. Chem. 272, 22934-22939. doi: 10.1074/jbc.272.36.22934
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22934-22939
-
-
Jakobsson, P.J.1
Mancini, J.A.2
Riendeau, D.3
FordHutchinson, A.W.4
-
73
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Käll, L., Krogh, A., and Sonnhammer, E. L. L. (2004). A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338, 1027-1036. doi: 10.1016/j.jmb.2004.03.016
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 1027-1036
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
74
-
-
84976907502
-
KEGG as a reference resource for gene and protein annotation
-
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. (2016). KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462. doi: 10.1093/nar/gkv1070
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D457-D462
-
-
Kanehisa, M.1
Sato, Y.2
Kawashima, M.3
Furumichi, M.4
Tanabe, M.5
-
75
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh, K., Misawa, K., Kuma, K., and Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 3059-3066. doi: 10.1093/nar/gkf436
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
76
-
-
0042550112
-
Modulation of Na+/H+ antiporter activity by extreme pH and salt in the halotolerant alga Dunaliella salina
-
Katz, A., Pick, U., and Avron, M. (1992). Modulation of Na+/H+ antiporter activity by extreme pH and salt in the halotolerant alga Dunaliella salina. Plant Physiol. 100, 1224-1229. doi: 10.1104/pp.100.3.1224
-
(1992)
Plant Physiol.
, vol.100
, pp. 1224-1229
-
-
Katz, A.1
Pick, U.2
Avron, M.3
-
77
-
-
0142186359
-
Expression profiles of peroxiredoxin proteins of the rodent malaria parasite Plasmodium yoelii
-
Kawazu, S., Nozaki, T., Tsuboi, T., Nakano, Y., Komaki-Yasuda, K., Ikenoue, N., et al. (2003). Expression profiles of peroxiredoxin proteins of the rodent malaria parasite Plasmodium yoelii. Int. J. Parasitol. 33, 1455-1461. doi: 10.1016/S0020-7519(03)00184-X
-
(2003)
Int. J. Parasitol.
, vol.33
, pp. 1455-1461
-
-
Kawazu, S.1
Nozaki, T.2
Tsuboi, T.3
Nakano, Y.4
Komaki-Yasuda, K.5
Ikenoue, N.6
-
78
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling, P. J., and Palmer, J. D. (2008). Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9, 605-618. doi: 10.1038/nrg2386
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
79
-
-
84903286893
-
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
-
Keeling, P. J., Burki, F., Wilcox, H. M., Allam, B., Allen, E. E., Amaral-Zettler, L. A., et al. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biol. 12:e1001889. doi: 10.1371/journal.pbio.1001889
-
(2014)
PLoS Biol.
, vol.12
-
-
Keeling, P.J.1
Burki, F.2
Wilcox, H.M.3
Allam, B.4
Allen, E.E.5
Amaral-Zettler, L.A.6
-
80
-
-
0041843911
-
Induction of 1-Cys peroxiredoxin expression by oxidative stress in lung epithelial cells
-
Kim, H. S., Manevich, Y., Feinstein, S. I., Pak, J. H., Ho, Y. S., and Fisher, A. B. (2003). Induction of 1-Cys peroxiredoxin expression by oxidative stress in lung epithelial cells. Am. J. Physiol. Lung Cell. Mol. Physiol. 285, L363-L369. doi: 10.1152/ajplung.00078.2003
-
(2003)
Am. J. Physiol. Lung Cell. Mol. Physiol.
, vol.285
, pp. L363-L369
-
-
Kim, H.S.1
Manevich, Y.2
Feinstein, S.I.3
Pak, J.H.4
Ho, Y.S.5
Fisher, A.B.6
-
81
-
-
0043032814
-
The mechanism of Mycobacterium tuberculosis alkylhydroperoxidase AhpD as defined by mutagenesis, crystallography, and kinetics
-
Koshkin, A., Nunn, C. M., Djordjevic, S., and de Montellano, P. R. O. (2003). The mechanism of Mycobacterium tuberculosis alkylhydroperoxidase AhpD as defined by mutagenesis, crystallography, and kinetics. J. Biol. Chem. 278, 29502-29508. doi: 10.1074/jbc.M303747200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29502-29508
-
-
Koshkin, A.1
Nunn, C.M.2
Djordjevic, S.3
de Montellano, P.R.O.4
-
82
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. L. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580. doi: 10.1006/jmbi.2000.4315
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
-
83
-
-
84964697423
-
Transcriptomic characterization of the enzymatic antioxidants FeSOD, MnSOD, APX and KatG in the dinoflagellate genus Symbiodinium
-
Krueger, T., Fisher, P. L., Becker, S., Pontasch, S., Dove, S., Hoegh-Guldberg, O., et al. (2015). Transcriptomic characterization of the enzymatic antioxidants FeSOD, MnSOD, APX and KatG in the dinoflagellate genus Symbiodinium. BMC Evol. Biol. 15:48. doi: 10.1186/s12862-015-0326-0
-
(2015)
BMC Evol. Biol.
, vol.15
, pp. 48
-
-
Krueger, T.1
Fisher, P.L.2
Becker, S.3
Pontasch, S.4
Dove, S.5
Hoegh-Guldberg, O.6
-
84
-
-
84995794392
-
A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70% rule
-
Ku, C., and Martin, W. F. (2016). A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70% rule. BMC Biol. 14:89. doi: 10.1186/s12915-016-0315-9
-
(2016)
BMC Biol.
, vol.14
, pp. 89
-
-
Ku, C.1
Martin, W.F.2
-
85
-
-
84940488362
-
Endosymbiotic origin and differential loss of eukaryotic genes
-
Ku, C., Nelson-Sathi, S., Roettger, M., Sousa, F. L., Lockhart, P. J., Bryant, D., et al. (2015). Endosymbiotic origin and differential loss of eukaryotic genes. Nature 524, 427-432. doi: 10.1038/nature14963
-
(2015)
Nature
, vol.524
, pp. 427-432
-
-
Ku, C.1
Nelson-Sathi, S.2
Roettger, M.3
Sousa, F.L.4
Lockhart, P.J.5
Bryant, D.6
-
86
-
-
76149138878
-
Morphological response of the halophilic fungal genus Wallemia to high salinity
-
Kuncic, M. K., Kogej, T., Drobne, D., and Gunde-Cimerman, N. (2010). Morphological response of the halophilic fungal genus Wallemia to high salinity. Appl. Environ. Microbiol. 76, 329-337. doi: 10.1128/AEM.02318-09
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 329-337
-
-
Kuncic, M.K.1
Kogej, T.2
Drobne, D.3
Gunde-Cimerman, N.4
-
87
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi: 10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
88
-
-
84896735766
-
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law, C. W., Chen, Y., Shi, W., and Smyth, G. K. (2014). Voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15:R29. doi: 10.1186/gb-2014-15-2-r29
-
(2014)
Genome Biol.
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
89
-
-
0033765314
-
A small heat shock protein cooperates with Heat Shock Protein 70 systems to reactivate a heat-denatured protein
-
Lee, G. J., and Vierling, E. (2000). A small heat shock protein cooperates with Heat Shock Protein 70 systems to reactivate a heat-denatured protein. Plant Physiol. 122, 189-197. doi: 10.1104/pp.122.1.189
-
(2000)
Plant Physiol.
, vol.122
, pp. 189-197
-
-
Lee, G.J.1
Vierling, E.2
-
90
-
-
0031024691
-
A small heat shock protein stably binds heat-denatured model substrates and can maintain a substrate in a folding-competent state
-
Lee, G. J., Roseman, A. M., Saibil, H. R., and Vierling, E. (1997). A small heat shock protein stably binds heat-denatured model substrates and can maintain a substrate in a folding-competent state. EMBO J. 16, 659-671. doi: 10.1093/emboj/16.3.659
-
(1997)
EMBO J.
, vol.16
, pp. 659-671
-
-
Lee, G.J.1
Roseman, A.M.2
Saibil, H.R.3
Vierling, E.4
-
91
-
-
84881562501
-
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii
-
Lenassi, M., Gostincar, C., Jackman, S., Turk, M., Sadowski, I., Nislow, C., et al. (2013). Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii. PLoS ONE 8:e71328. doi: 10.1371/journal.pone.0071328
-
(2013)
PLoS ONE
, vol.8
-
-
Lenassi, M.1
Gostincar, C.2
Jackman, S.3
Turk, M.4
Sadowski, I.5
Nislow, C.6
-
92
-
-
84876263777
-
EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
-
Leng, N., Dawson, J. A., Thomson, J. A., Ruotti, V., Rissman, A. I., Smits, B. M. G., et al. (2013). EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics 29, 1035-1043. doi: 10.1093/bioinformatics/btt087
-
(2013)
Bioinformatics
, vol.29
, pp. 1035-1043
-
-
Leng, N.1
Dawson, J.A.2
Thomson, J.A.3
Ruotti, V.4
Rissman, A.I.5
Smits, B.M.G.6
-
93
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B., and Dewey, C. N. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12:323. doi: 10.1186/1471-2105-12-323
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
94
-
-
84978909337
-
Structure of human Niemann-Pick C1 protein
-
Li, X., Wang, J., Coutavas, E., Shi, H., Hao, Q., and Blobel, G. (2016). Structure of human Niemann-Pick C1 protein. Proc. Natl. Acad. Sci. U.S.A. 113, 8212-8217. doi: 10.1073/pnas.1607795113
-
(2016)
Proc. Natl. Acad. Sci. U.S.A.
, vol.113
, pp. 8212-8217
-
-
Li, X.1
Wang, J.2
Coutavas, E.3
Shi, H.4
Hao, Q.5
Blobel, G.6
-
95
-
-
84893083276
-
APETALA/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs
-
Licausi, F., Ohme-Takagi, M., and Perata, P. (2013). APETALA/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs. New Phytol. 199, 639-649. doi: 10.1111/nph.12291
-
(2013)
New Phytol.
, vol.199
, pp. 639-649
-
-
Licausi, F.1
Ohme-Takagi, M.2
Perata, P.3
-
96
-
-
84874209971
-
Characterization of a second sterol-esterifying enzyme in Toxoplasma highlights the importance of cholesterol storage pathways for the parasite
-
Lige, B., Sampels, V., and Coppens, I. (2013). Characterization of a second sterol-esterifying enzyme in Toxoplasma highlights the importance of cholesterol storage pathways for the parasite. Mol. Microbiol. 87, 951-967. doi: 10.1111/mmi.12142
-
(2013)
Mol. Microbiol.
, vol.87
, pp. 951-967
-
-
Lige, B.1
Sampels, V.2
Coppens, I.3
-
97
-
-
0028223829
-
S-thiolation and irreversible oxidation of sulfhydryls on carbonic andhydrase III during oxidative stess: a method for studying protein modification in intact cells and tissues
-
Lii, C. K., Chai, Y. C., Zhao, W., Thomas, J. A., and Hendrich, S. (1994). S-thiolation and irreversible oxidation of sulfhydryls on carbonic andhydrase III during oxidative stess: a method for studying protein modification in intact cells and tissues. Arch. Biochem. Biophys. 308, 231-239. doi: 10.1006/abbi.1994.1033
-
(1994)
Arch. Biochem. Biophys.
, vol.308
, pp. 231-239
-
-
Lii, C.K.1
Chai, Y.C.2
Zhao, W.3
Thomas, J.A.4
Hendrich, S.5
-
98
-
-
49349116124
-
Glutaredoxin systems
-
Lillig, C. H., Berndt, C., and Holmgren, A. (2008). Glutaredoxin systems. Biochim. Biophys. Acta Gen. Subjects 1780, 1304-1317. doi: 10.1016/j.bbagen.2008.06.003
-
(2008)
Biochim. Biophys. Acta Gen. Subjects
, vol.1780
, pp. 1304-1317
-
-
Lillig, C.H.1
Berndt, C.2
Holmgren, A.3
-
99
-
-
77951727293
-
Lipids on trial: the search for the offending metabolite in Niemann-Pick type C disease
-
Lloyd-Evans, E., and Platt, F. M. (2010). Lipids on trial: the search for the offending metabolite in Niemann-Pick type C disease. Traffic 11, 419-428. doi: 10.1111/j.1600-0854.2010.01032.x
-
(2010)
Traffic
, vol.11
, pp. 419-428
-
-
Lloyd-Evans, E.1
Platt, F.M.2
-
100
-
-
0003422388
-
-
4th Edn. New York, NY: W. H. Freeman.
-
Lodish, H., Berk, A., Zipursky, S. L., Matsudaira, P., Baltimore, D., and Darnell, J. (2000). Molecular Cell Biology, 4th Edn. New York, NY: W. H. Freeman.
-
(2000)
Molecular Cell Biology
-
-
Lodish, H.1
Berk, A.2
Zipursky, S.L.3
Matsudaira, P.4
Baltimore, D.5
Darnell, J.6
-
101
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W., and Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550. doi: 10.1186/s13059-014-0550-8
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
102
-
-
0025920876
-
Microbial reduction of uranium
-
Lovley, D. R., Phillips, E. J. P., Gorby, Y. A., and Landa, E. R. (1991). Microbial reduction of uranium. Nature 350, 413-416. doi: 10.1038/350413a0
-
(1991)
Nature
, vol.350
, pp. 413-416
-
-
Lovley, D.R.1
Phillips, E.J.P.2
Gorby, Y.A.3
Landa, E.R.4
-
103
-
-
71749101439
-
Functional characterization of intracellular Dictyostelium discoideum P2X receptors
-
Ludlow, M. J., Durai, L., and Ennion, S. J. (2009). Functional characterization of intracellular Dictyostelium discoideum P2X receptors. J. Biol. Chem. 284, 35227-35239. doi: 10.1074/jbc.M109.045674
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 35227-35239
-
-
Ludlow, M.J.1
Durai, L.2
Ennion, S.J.3
-
104
-
-
0031719952
-
The yeast Saccharomyces cerevisiae contains two glutaredoxin genes that are required for protection against reactive oxygen species
-
Luikenhuis, S., Perrone, G., Dawes, I. W., and Grant, C. M. (1998). The yeast Saccharomyces cerevisiae contains two glutaredoxin genes that are required for protection against reactive oxygen species. Mol. Biol. Cell 9, 1081-1091. doi: 10.1091/mbc.9.5.1081
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 1081-1091
-
-
Luikenhuis, S.1
Perrone, G.2
Dawes, I.W.3
Grant, C.M.4
-
105
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G., and Goodson, M. (2011). Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21, 936-939. doi: 10.1101/gr.111120.110
-
(2011)
Genome Res.
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
106
-
-
78649906789
-
Environmentally induced oxidative stress in aquatic animals
-
Lushchak, V. I. (2011). Environmentally induced oxidative stress in aquatic animals. Aquat. Toxicol. 101, 13-30. doi: 10.1016/j.aquatox.2010.10.006
-
(2011)
Aquat. Toxicol.
, vol.101
, pp. 13-30
-
-
Lushchak, V.I.1
-
107
-
-
84873035441
-
Biochemical characterization of Plasmodium falciparum CTP: phosphoethanolamine cytidylyltransferase shows that only one of the two cytidylyltransferase domains is active
-
Maheshwari, S., Lavigne, M., Contet, A., Alberge, B., Pihan, E., Kocken, C., et al. (2013). Biochemical characterization of Plasmodium falciparum CTP: phosphoethanolamine cytidylyltransferase shows that only one of the two cytidylyltransferase domains is active. Biochem. J. 450, 159-167. doi: 10.1042/BJ20121480
-
(2013)
Biochem. J.
, vol.450
, pp. 159-167
-
-
Maheshwari, S.1
Lavigne, M.2
Contet, A.3
Alberge, B.4
Pihan, E.5
Kocken, C.6
-
108
-
-
10744226129
-
Mutagenesis of the putative sterol-sensing domain of yeast Niemann Pick C-related protein reveals a primordial role in subcellular sphingolipid distribution
-
Malathi, K., Higaki, K., Tinkelenberg, A. H., Balderes, D. A., Almanzar-Paramio, D., Wilcox, L. J., et al. (2004). Mutagenesis of the putative sterol-sensing domain of yeast Niemann Pick C-related protein reveals a primordial role in subcellular sphingolipid distribution. J. Cell Biol. 164, 547-556. doi: 10.1083/jcb.200310046
-
(2004)
J. Cell Biol.
, vol.164
, pp. 547-556
-
-
Malathi, K.1
Higaki, K.2
Tinkelenberg, A.H.3
Balderes, D.A.4
Almanzar-Paramio, D.5
Wilcox, L.J.6
-
109
-
-
84941042486
-
CDD: NCBI's conserved domain database
-
Marchler-Bauer, A., Derbyshire, M. K., Gonzales, N. R., Lu, S. N., Chitsaz, F., Geer, L. Y., et al. (2015). CDD: NCBI's conserved domain database. Nucleic Acids Res. 43, D222-D226. doi: 10.1093/nar/gku1221
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D222-D226
-
-
Marchler-Bauer, A.1
Derbyshire, M.K.2
Gonzales, N.R.3
Lu, S.N.4
Chitsaz, F.5
Geer, L.Y.6
-
110
-
-
0035424240
-
PI(4,5)P-2 regulation of surface membrane traffic
-
Martin, T. F. J. (2001). PI(4,5)P-2 regulation of surface membrane traffic. Curr. Opin. Cell Biol. 13, 493-499. doi: 10.1016/S0955-0674(00)00241-6
-
(2001)
Curr. Opin. Cell Biol.
, vol.13
, pp. 493-499
-
-
Martin, T.F.J.1
-
111
-
-
67049156798
-
The NADPH-dependent thioredoxin system constitutes a functional backup for cytosolic glutathione reductase in Arabidopsis
-
Marty, L., Siala, W., Schwarzländer, M., Fricker, M. D., Wirtz, M., Sweetlove, L. J., et al. (2009). The NADPH-dependent thioredoxin system constitutes a functional backup for cytosolic glutathione reductase in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 106, 9109-9114. doi: 10.1073/pnas.0900206106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9109-9114
-
-
Marty, L.1
Siala, W.2
Schwarzländer, M.3
Fricker, M.D.4
Wirtz, M.5
Sweetlove, L.J.6
-
112
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., and Kanehisa, M. (2007). KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35, W182-W185. doi: 10.1093/nar/gkm321
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W182-W185
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
113
-
-
77953285716
-
1-Cysteine peroxiredoxin: a dual-function enzyme with peroxidase and acidic Ca2+-independent phospholipase A(2) activities
-
Nevalainen, T. J. (2010). 1-Cysteine peroxiredoxin: a dual-function enzyme with peroxidase and acidic Ca2+-independent phospholipase A(2) activities. Biochimie 92, 638-644. doi: 10.1016/j.biochi.2010.01.019
-
(2010)
Biochimie
, vol.92
, pp. 638-644
-
-
Nevalainen, T.J.1
-
114
-
-
69449095625
-
Microbulbifer variabilis sp
-
Nishijima, M., Takadera, T., Imamura, N., Kasai, H., An, K. D., Adachi, K., et al. (2009). Microbulbifer variabilis sp. nov. and Microbulbifer epialgicus sp. nov., isolated from Pacific marine algae, possess a rod-coccus cell cycle in association with the growth phase. Int. J. Syst. Evol. Microbiol. 59, 1696-1707. doi: 10.1099/ijs.0.006452-0
-
(2009)
nov. and Microbulbifer epialgicus sp. nov., isolated from Pacific marine algae, possess a rod-coccus cell cycle in association with the growth phase. Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1696-1707
-
-
Nishijima, M.1
Takadera, T.2
Imamura, N.3
Kasai, H.4
An, K.D.5
Adachi, K.6
-
115
-
-
0036788971
-
Molecular physiology of P2X receptors
-
North, R. A. (2002). Molecular physiology of P2X receptors. Physiol. Rev. 82, 1013-1067. doi: 10.1152/physrev.00015.2002
-
(2002)
Physiol. Rev.
, vol.82
, pp. 1013-1067
-
-
North, R.A.1
-
116
-
-
78751689485
-
Hydrogen peroxide modifies human sperm peroxiredoxins in a dose-dependent manner
-
O'Flaherty, C., and de Souza, A. R. (2011). Hydrogen peroxide modifies human sperm peroxiredoxins in a dose-dependent manner. Biol. Reprod. 84, 238-247. doi: 10.1095/biolreprod.110.085712
-
(2011)
Biol. Reprod.
, vol.84
, pp. 238-247
-
-
O'Flaherty, C.1
de Souza, A.R.2
-
117
-
-
0030878240
-
ELO2 and ELO3, homologues of the Saccharomyces cerevisiae ELO1 gene, function in fatty acid elongation and are required for sphingolipid formation
-
Oh, C. S., Toke, D. A., Mandala, S., and Martin, C. E. (1997). ELO2 and ELO3, homologues of the Saccharomyces cerevisiae ELO1 gene, function in fatty acid elongation and are required for sphingolipid formation. J. Biol. Chem. 272, 17376-17384. doi: 10.1074/jbc.272.28.17376
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 17376-17384
-
-
Oh, C.S.1
Toke, D.A.2
Mandala, S.3
Martin, C.E.4
-
118
-
-
70349212529
-
Loss of halophytism by interference with SOS1 expression
-
Oh, D.-H., Leidi, E., Zhang, Q., Hwang, S.-M., Li, Y., Quintero, F. J., et al. (2009). Loss of halophytism by interference with SOS1 expression. Plant Physiol. 151, 210-222. doi: 10.1104/pp.109.137802
-
(2009)
Plant Physiol.
, vol.151
, pp. 210-222
-
-
Oh, D.-H.1
Leidi, E.2
Zhang, Q.3
Hwang, S.-M.4
Li, Y.5
Quintero, F.J.6
-
119
-
-
0033452126
-
A low resolution model for the interaction of G proteins with G protein-coupled receptors
-
Oliveira, L., Paiva, A. C. M., and Vriend, G. (1999). A low resolution model for the interaction of G proteins with G protein-coupled receptors. Protein Eng. 12, 1087-1095. doi: 10.1093/protein/12.12.1087
-
(1999)
Protein Eng.
, vol.12
, pp. 1087-1095
-
-
Oliveira, L.1
Paiva, A.C.M.2
Vriend, G.3
-
121
-
-
0012498466
-
-
in Halophilic Microorganisms and Their Environments, ed J. Seckbach (Dordrecht: Kluwyer Academic Publishers)
-
Oren, A. (2002b). "Intracellular salt concentration and ion metabolism in halophilic microorganisms," in Halophilic Microorganisms and Their Environments, ed J. Seckbach (Dordrecht: Kluwyer Academic Publishers), 207-231.
-
(2002)
Intracellular salt concentration and ion metabolism in halophilic microorganisms
, pp. 207-231
-
-
Oren, A.1
-
122
-
-
10044228161
-
Salt tolerance and salinity effects on plants: a review
-
Panda, A. K., and Das, A. B. (2005). Salt tolerance and salinity effects on plants: a review. Ecotoxicol. Environ. Saf. 60, 324-349. doi: 10.1016/j.ecoenv.2004.06.010
-
(2005)
Ecotoxicol. Environ. Saf.
, vol.60
, pp. 324-349
-
-
Panda, A.K.1
Das, A.B.2
-
123
-
-
80053093217
-
Characterization of Pharyngomonas kirbyi (="Macropharyngomonas halophila" nomen nudum), a very deep-branching, obligately halophilic Heterolobosean
-
Park, J. S., and Simpson, A. G. B. (2011). Characterization of Pharyngomonas kirbyi (="Macropharyngomonas halophila" nomen nudum), a very deep-branching, obligately halophilic Heterolobosean. Protist 162, 691-709. doi: 10.1016/j.protis.2011.05.004
-
(2011)
Protist
, vol.162
, pp. 691-709
-
-
Park, J.S.1
Simpson, A.G.B.2
-
124
-
-
84937135179
-
Diversity of heterotrophic protists from extremely hypersaline habitats
-
Park, J. S., and Simpson, A. G. B. (2015). Diversity of heterotrophic protists from extremely hypersaline habitats. Protist 166, 422-437. doi: 10.1016/j.protis.2015.06.001
-
(2015)
Protist
, vol.166
, pp. 422-437
-
-
Park, J.S.1
Simpson, A.G.B.2
-
125
-
-
33751117187
-
Halocafeteria seosinensis gen
-
Park, J. S., Cho, B. C., and Simpson, A. G. B. (2006). Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern. Extremophiles 10, 493-504. doi: 10.1007/s00792-006-0001-x
-
(2006)
et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern. Extremophiles
, vol.10
, pp. 493-504
-
-
Park, J.S.1
Cho, B.C.2
Simpson, A.G.B.3
-
126
-
-
34347336591
-
Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938)
-
Park, J. S., Simpson, A. G. B., Lee, W. J., and Cho, B. C. (2007). Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938). Protist 158, 397-413. doi: 10.1016/j.protis.2007.03.004
-
(2007)
Protist
, vol.158
, pp. 397-413
-
-
Park, J.S.1
Simpson, A.G.B.2
Lee, W.J.3
Cho, B.C.4
-
127
-
-
64049111580
-
Ultrastructure and molecular phylogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen
-
Park, J. S., Simpson, A. G., Brown, S., and Cho, B. C. (2009). Ultrastructure and molecular phylogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat. Protist 160, 265-283. doi: 10.1016/j.protis.2008.10.002
-
(2009)
et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat. Protist
, vol.160
, pp. 265-283
-
-
Park, J.S.1
Simpson, A.G.2
Brown, S.3
Cho, B.C.4
-
128
-
-
84911429654
-
STAMP: statistical analysis of taxonomic and functional profiles
-
Parks, D. H., Tyson, G. W., Hugenholtz, P., and Beiko, R. G. (2014). STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics 30, 3123-3124. doi: 10.1093/bioinformatics/btu494
-
(2014)
Bioinformatics
, vol.30
, pp. 3123-3124
-
-
Parks, D.H.1
Tyson, G.W.2
Hugenholtz, P.3
Beiko, R.G.4
-
129
-
-
33645300106
-
An operon in Streptococcus pneumoniae containing a putative alkylhydroperoxidase D homologue contributes to virulence and the response to oxidative stress
-
Paterson, G. K., Blue, C. E., and Mitchell, T. J. (2006). An operon in Streptococcus pneumoniae containing a putative alkylhydroperoxidase D homologue contributes to virulence and the response to oxidative stress. Microb. Pathog. 40, 152-160. doi: 10.1016/j.micpath.2005.12.003
-
(2006)
Microb. Pathog.
, vol.40
, pp. 152-160
-
-
Paterson, G.K.1
Blue, C.E.2
Mitchell, T.J.3
-
130
-
-
47149088683
-
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
-
Paul, S., Bag, S. K., Das, S., Harvill, E. T., and Dutta, C. (2008). Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol. 9:R70. doi: 10.1186/gb-2008-9-4-r70
-
(2008)
Genome Biol.
, vol.9
, pp. R70
-
-
Paul, S.1
Bag, S.K.2
Das, S.3
Harvill, E.T.4
Dutta, C.5
-
131
-
-
46849102138
-
The glycosylphosphatidylinositol anchor: a complex membrane-anchoring structure for proteins
-
Paulick, M. G., and Bertozzi, C. R. (2008). The glycosylphosphatidylinositol anchor: a complex membrane-anchoring structure for proteins. Biochemistry 47, 6991-7000. doi: 10.1021/bi8006324
-
(2008)
Biochemistry
, vol.47
, pp. 6991-7000
-
-
Paulick, M.G.1
Bertozzi, C.R.2
-
132
-
-
33745898503
-
Role of oxidative stress in the extremely salt-tolerant yeast Hortaea werneckii
-
Petrovic, U. (2006). Role of oxidative stress in the extremely salt-tolerant yeast Hortaea werneckii. FEMS Yeast Res. 6, 816-822. doi: 10.1111/j.1567-1364.2006.00063.x
-
(2006)
FEMS Yeast Res.
, vol.6
, pp. 816-822
-
-
Petrovic, U.1
-
133
-
-
59249106233
-
Adaptation of extremely halotolerant black yeast Hortaea werneckii to increased osmolarity: a molecular perspective at a glance
-
Plemenitaš, A., Vaupotic, T., Lenassi, M., Kogej, T., and Gunde-Cimerman, N. (2008). Adaptation of extremely halotolerant black yeast Hortaea werneckii to increased osmolarity: a molecular perspective at a glance. Stud. Mycol. 61, 67-75. doi: 10.3114/sim.2008.61.06
-
(2008)
Stud. Mycol.
, vol.61
, pp. 67-75
-
-
Plemenitaš, A.1
Vaupotic, T.2
Lenassi, M.3
Kogej, T.4
Gunde-Cimerman, N.5
-
134
-
-
84891757311
-
eggNOG v4.0: nested orthology inference across 3686 organisms
-
Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., et al. (2014). eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42, D231-D239. doi: 10.1093/nar/gkt1253
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D231-D239
-
-
Powell, S.1
Forslund, K.2
Szklarczyk, D.3
Trachana, K.4
Roth, A.5
Huerta-Cepas, J.6
-
135
-
-
77949422096
-
Geobacter daltonii sp
-
Prakash, O., Gihring, T. M., Dalton, D. D., Chin, K. J., Green, S. J., Akob, D. M., et al. (2010). Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination. Int. J. Syst. Evol. Microbiol. 60, 546-553. doi: 10.1099/ijs.0.010843-0
-
(2010)
nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination. Int. J. Syst. Evol. Microbiol.
, vol.60
, pp. 546-553
-
-
Prakash, O.1
Gihring, T.M.2
Dalton, D.D.3
Chin, K.J.4
Green, S.J.5
Akob, D.M.6
-
136
-
-
67649327176
-
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
-
Price, M. N., Dehal, P. S., and Arkin, A. P. (2009). FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26, 1641-1650. doi: 10.1093/molbev/msp077
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
137
-
-
0019346629
-
The fluidity of cell membranes and its regulation
-
Quinn, P. J. (1981). The fluidity of cell membranes and its regulation. Prog. Biophys. Mol. Biol. 38, 1-104. doi: 10.1016/0079-6107(81)90011-0
-
(1981)
Prog. Biophys. Mol. Biol.
, vol.38
, pp. 1-104
-
-
Quinn, P.J.1
-
138
-
-
0028170673
-
S-thiolation of glyceraldehyde-3-phosphate dehydrogenase induced by the phagocytosis-associated respiratory burst in blood monocytes
-
Ravichandran, V., Seres, T., Moriguchi, T., Thomas, J. A., and Johnston, R. B. (1994). S-thiolation of glyceraldehyde-3-phosphate dehydrogenase induced by the phagocytosis-associated respiratory burst in blood monocytes. J. Biol. Chem. 269, 25010-25015.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 25010-25015
-
-
Ravichandran, V.1
Seres, T.2
Moriguchi, T.3
Thomas, J.A.4
Johnston, R.B.5
-
139
-
-
84860436217
-
Possible role of horizontal gene transfer in the colonization of sea ice by algae
-
Raymond, J. A., and Kim, H. J. (2012). Possible role of horizontal gene transfer in the colonization of sea ice by algae. PLoS ONE 7:e35968. doi: 10.1371/journal.pone.0035968
-
(2012)
PLoS ONE
, vol.7
-
-
Raymond, J.A.1
Kim, H.J.2
-
140
-
-
0028957607
-
Purification and characterization of a novel specific phosphatidylglycerol-phosphatidylinositol transfer protein with high activity from Aspergillus oryzae
-
Record, E., Asther, M., Marion, D., and Asther, M. (1995). Purification and characterization of a novel specific phosphatidylglycerol-phosphatidylinositol transfer protein with high activity from Aspergillus oryzae. Biochim. Biophys. Acta Lipids Lipid Metab. 1256, 18-24. doi: 10.1016/0005-2760(94)00252-T
-
(1995)
Biochim. Biophys. Acta Lipids Lipid Metab.
, vol.1256
, pp. 18-24
-
-
Record, E.1
Asther, M.2
Marion, D.3
Asther, M.4
-
141
-
-
0033574029
-
Characterization and expression of the cDNA encoding a new kind of phospholipid transfer protein, the phosphatidylglycerol/phosphatidylinositol transfer protein from Aspergillus oryzae: evidence of a putative membrane targeted phospholipid transfer protein in fungi
-
Record, E., Moukha, S., and Asther, M. (1999). Characterization and expression of the cDNA encoding a new kind of phospholipid transfer protein, the phosphatidylglycerol/phosphatidylinositol transfer protein from Aspergillus oryzae: evidence of a putative membrane targeted phospholipid transfer protein in fungi. Biochim. Biophys. Acta Gene Struct. Express. 1444, 276-282. doi: 10.1016/S0167-4781(98)00272-3
-
(1999)
Biochim. Biophys. Acta Gene Struct. Express.
, vol.1444
, pp. 276-282
-
-
Record, E.1
Moukha, S.2
Asther, M.3
-
142
-
-
0029024864
-
Voltage-sensitive adenylyl-cyclase activity in cultured neurons-a calcium-independent phenomenon
-
Reddy, R., Smith, D., Wayman, G., Wu, Z. L., Villacres, E. C., and Storm, D. R. (1995). Voltage-sensitive adenylyl-cyclase activity in cultured neurons-a calcium-independent phenomenon. J. Biol. Chem. 270, 14340-14346. doi: 10.1074/jbc.270.24.14340
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 14340-14346
-
-
Reddy, R.1
Smith, D.2
Wayman, G.3
Wu, Z.L.4
Villacres, E.C.5
Storm, D.R.6
-
143
-
-
33645295532
-
Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
-
Ricard, G., McEwan, N. R., Dutilh, B. E., Jouany, J. P., Macheboeuf, D., Mitsumori, M., et al. (2006). Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment. BMC Genomics 7:22. doi: 10.1186/1471-2164-7-22
-
(2006)
BMC Genomics
, vol.7
, pp. 22
-
-
Ricard, G.1
McEwan, N.R.2
Dutilh, B.E.3
Jouany, J.P.4
Macheboeuf, D.5
Mitsumori, M.6
-
144
-
-
0037838657
-
Horizontal gene transfer and the evolution of parasitic protozoa
-
Richards, T. A., Hirt, R. P., Williams, B. A. P., and Embley, T. M. (2003). Horizontal gene transfer and the evolution of parasitic protozoa. Protist 154, 17-32. doi: 10.1078/143446103764928468
-
(2003)
Protist
, vol.154
, pp. 17-32
-
-
Richards, T.A.1
Hirt, R.P.2
Williams, B.A.P.3
Embley, T.M.4
-
145
-
-
77956277719
-
Purification of RNA using TRIzol (TRI Reagent)
-
Rio, D. C., Ares, M., Hannon, G. J., and Nilsen, T. W. (2010). Purification of RNA using TRIzol (TRI Reagent). Cold Spring Harb. Protoc. 2010:pdb.prot5439. doi: 10.1101/pdb.prot5439
-
(2010)
Cold Spring Harb. Protoc.
, vol.2010
-
-
Rio, D.C.1
Ares, M.2
Hannon, G.J.3
Nilsen, T.W.4
-
146
-
-
84926507971
-
limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., et al. (2015). limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43:e47. doi: 10.1093/nar/gkv007
-
(2015)
Nucleic Acids Res.
, vol.43
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
-
147
-
-
33646498780
-
Organic compatible solutes of halotolerant and halophilic microorganisms
-
Roberts, M. F. (2005). Organic compatible solutes of halotolerant and halophilic microorganisms. Saline Syst. 1:5. doi: 10.1186/1746-1448-1-5
-
(2005)
Saline Syst.
, vol.1
, pp. 5
-
-
Roberts, M.F.1
-
148
-
-
84938892953
-
Acyl-CoA:cholesterol acyltransferases (ACATs/SOATs): enzymes with multiple sterols as substrates and as activators
-
Rogers, M. A., Liu, J., Song, B.-L., Li, B.-L., Chang, C. C. Y., and Chang, T.-Y. (2015). Acyl-CoA:cholesterol acyltransferases (ACATs/SOATs): enzymes with multiple sterols as substrates and as activators. J. Steroid Biochem. Mol. Biol. 151, 102-107. doi: 10.1016/j.jsbmb.2014.09.008
-
(2015)
J. Steroid Biochem. Mol. Biol.
, vol.151
, pp. 102-107
-
-
Rogers, M.A.1
Liu, J.2
Song, B.-L.3
Li, B.-L.4
Chang, C.C.Y.5
Chang, T.-Y.6
-
149
-
-
0038342696
-
Crystal structure of the vertebrate NADP(H)-dependent alcohol dehydrogenase (ADH8)
-
Rosell, A., Valencia, E., Parés, X., Fita, I., Farrés, J., and Ochoa, W. F. (2003). Crystal structure of the vertebrate NADP(H)-dependent alcohol dehydrogenase (ADH8). J. Mol. Biol. 330, 75-85. doi: 10.1016/S0022-2836(03)00431-5
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 75-85
-
-
Rosell, A.1
Valencia, E.2
Parés, X.3
Fita, I.4
Farrés, J.5
Ochoa, W.F.6
-
150
-
-
84958012790
-
Function of MYB domain transcription factors in abiotic stress and epigenetic control of stress response in plant genome
-
Roy, S. (2016). Function of MYB domain transcription factors in abiotic stress and epigenetic control of stress response in plant genome. Plant Signal. Behav. 11:e1117723. doi: 10.1080/15592324.2015.1117723
-
(2016)
Plant Signal. Behav.
, vol.11
-
-
Roy, S.1
-
151
-
-
0024615366
-
Adaptive modification in membranes of halotolerant and halophilic microorganisms
-
Russell, N. J. (1989). Adaptive modification in membranes of halotolerant and halophilic microorganisms. J. Bioenerg. Biomembr. 21, 93-113. doi: 10.1007/BF00762214
-
(1989)
J. Bioenerg. Biomembr.
, vol.21
, pp. 93-113
-
-
Russell, N.J.1
-
152
-
-
0002416057
-
Lipids of halophilic and halotolerant microorganisms
-
eds R. H. Vreeland and L. I. Hochstein (Boca Raton, FL: CRC Press)
-
Russell, N. J. (1993). "Lipids of halophilic and halotolerant microorganisms," in The Biology of Halophilic Bacteria, eds R. H. Vreeland and L. I. Hochstein (Boca Raton, FL: CRC Press), 163-210.
-
(1993)
The Biology of Halophilic Bacteria
, pp. 163-210
-
-
Russell, N.J.1
-
153
-
-
3142564711
-
New aspects of sterol biosynthesis in growth and development of higher plants
-
Schaller, H. (2004). New aspects of sterol biosynthesis in growth and development of higher plants. Plant Physiol. Biochem. 42, 465-476. doi: 10.1016/j.plaphy.2004.05.012
-
(2004)
Plant Physiol. Biochem.
, vol.42
, pp. 465-476
-
-
Schaller, H.1
-
154
-
-
84874673466
-
Gene transfer from Bacteria and Archaea facilitated evolution of an extremophilic eukaryote
-
Schönknecht, G., Chen, W. H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., et al. (2013). Gene transfer from Bacteria and Archaea facilitated evolution of an extremophilic eukaryote. Science 339, 1207-1210. doi: 10.1126/science.1231707
-
(2013)
Science
, vol.339
, pp. 1207-1210
-
-
Schönknecht, G.1
Chen, W.H.2
Ternes, C.M.3
Barbier, G.G.4
Shrestha, R.P.5
Stanke, M.6
-
155
-
-
0023880441
-
Effect of glycosylation on the mechanism of renaturation of invertase from yeast
-
Schülke, N., and Schmid, F. X. (1988). Effect of glycosylation on the mechanism of renaturation of invertase from yeast. J. Biol. Chem. 263, 8832-8837.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 8832-8837
-
-
Schülke, N.1
Schmid, F.X.2
-
156
-
-
84929179703
-
The early Metazoan Trichoplax adhaerens possesses a functional O-GlcNAc system
-
Selvan, N., Mariappa, D., van den Toorn, H. W. P., Heck, A. J. R., Ferenbach, A. T., and van Aalten, D. M. F. (2015). The early Metazoan Trichoplax adhaerens possesses a functional O-GlcNAc system. J. Biol. Chem. 290, 11969-11982. doi: 10.1074/jbc.M114.628750
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 11969-11982
-
-
Selvan, N.1
Mariappa, D.2
van den Toorn, H.W.P.3
Heck, A.J.R.4
Ferenbach, A.T.5
van Aalten, D.M.F.6
-
157
-
-
84870448548
-
Reactive oxygen species, oxidative damage, and antioxidative defense mechanism in plants under stressful conditions
-
Sharma, P., Jha, A. B., Dubey, R. S., and Pessarakli, M. (2012). Reactive oxygen species, oxidative damage, and antioxidative defense mechanism in plants under stressful conditions. J. Bot. 2012:217037. doi: 10.1155/2012/217037
-
(2012)
J. Bot.
, vol.2012
, pp. 217037
-
-
Sharma, P.1
Jha, A.B.2
Dubey, R.S.3
Pessarakli, M.4
-
158
-
-
47049094874
-
Geobacter uraniireducens sp
-
Shelobolina, E. S., Vrionis, H. A., Findlay, R. H., and Lovley, D. R. (2008). Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation. Int. J. Syst. Evol. Microbiol. 58, 1075-1078. doi: 10.1099/ijs.0.65377-0
-
(2008)
nov., isolated from subsurface sediment undergoing uranium bioremediation. Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 1075-1078
-
-
Shelobolina, E.S.1
Vrionis, H.A.2
Findlay, R.H.3
Lovley, D.R.4
-
159
-
-
84988150619
-
Dissolved oxygen concentrations in hypersaline waters
-
Sherwood, J. E., Stagnitti, F., Kokkinn, M. J., and Williams, W. D. (1991). Dissolved oxygen concentrations in hypersaline waters. Limnol. Oceanogr. 36, 235-250. doi: 10.4319/lo.1991.36.2.0235
-
(1991)
Limnol. Oceanogr.
, vol.36
, pp. 235-250
-
-
Sherwood, J.E.1
Stagnitti, F.2
Kokkinn, M.J.3
Williams, W.D.4
-
160
-
-
44449122382
-
Controlling the membrane fluidity of yeasts during coupled thermal and osmotic treatments
-
Simonin, H., Beney, L., and Gervais, P. (2008). Controlling the membrane fluidity of yeasts during coupled thermal and osmotic treatments. Biotechnol. Bioeng. 100, 325-333. doi: 10.1002/bit.21749
-
(2008)
Biotechnol. Bioeng.
, vol.100
, pp. 325-333
-
-
Simonin, H.1
Beney, L.2
Gervais, P.3
-
161
-
-
84872282572
-
Intracellular P2X receptors as novel calcium release channels and modulators of osmoregulation in Dictyostelium
-
Sivaramakrishnan, V., and Fountain, S. J. (2013). Intracellular P2X receptors as novel calcium release channels and modulators of osmoregulation in Dictyostelium. Channels 7, 43-46. doi: 10.4161/chan.22737
-
(2013)
Channels
, vol.7
, pp. 43-46
-
-
Sivaramakrishnan, V.1
Fountain, S.J.2
-
162
-
-
84867145597
-
Deferrisoma camini gen
-
Slobodkina, G. B., Reysenbach, A. L., Panteleeva, A. N., Kostrikina, N. A., Wagner, I. D., Bonch-Osmolovskaya, E. A., et al. (2012). Deferrisoma camini gen. nov., sp nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria. Int. J. Syst. Evol. Microbiol. 62, 2463-2468. doi: 10.1099/ijs.0.038372-0
-
(2012)
nov., sp nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria. Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 2463-2468
-
-
Slobodkina, G.B.1
Reysenbach, A.L.2
Panteleeva, A.N.3
Kostrikina, N.A.4
Wagner, I.D.5
Bonch-Osmolovskaya, E.A.6
-
163
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth, G. K. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3:3. doi: 10.2202/1544-6115.1027
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
164
-
-
84937405121
-
Horizontal gene transfer: building the web of life
-
Soucy, S. M., Huang, J. L., and Gogarten, J. P. (2015). Horizontal gene transfer: building the web of life. Nat. Rev. Genet. 16, 472-482. doi: 10.1038/nrg3962
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 472-482
-
-
Soucy, S.M.1
Huang, J.L.2
Gogarten, J.P.3
-
165
-
-
84902190342
-
A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia
-
Stairs, C. W., Eme, L., Brown, M. W., Mutsaers, C., Susko, E., Dellaire, G., et al. (2014). A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Curr. Biol. 24, 1176-1186. doi: 10.1016/j.cub.2014.04.033
-
(2014)
Curr. Biol.
, vol.24
, pp. 1176-1186
-
-
Stairs, C.W.1
Eme, L.2
Brown, M.W.3
Mutsaers, C.4
Susko, E.5
Dellaire, G.6
-
166
-
-
14644397888
-
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., Ludwig, T., and Meier, H. (2005). RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21, 456-463. doi: 10.1093/bioinformatics/bti191
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
167
-
-
0033791468
-
Two-component signal transduction
-
Stock, A. M., Robinson, V. L., and Goudreau, P. N. (2000). Two-component signal transduction. Annu. Rev. Biochem. 69, 183-215. doi: 10.1146/annurev.biochem.69.1.183
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 183-215
-
-
Stock, A.M.1
Robinson, V.L.2
Goudreau, P.N.3
-
168
-
-
33747800346
-
Steroids, triterpenoids and molecular oxygen
-
Summons, R. E., Bradley, A. S., Jahnke, L. L., and Waldbauer, J. R. (2006). Steroids, triterpenoids and molecular oxygen. Philos. Trans. R. Soc. B Biol. Sci. 361, 951-968. doi: 10.1098/rstb.2006.1837
-
(2006)
Philos. Trans. R. Soc. B Biol. Sci.
, vol.361
, pp. 951-968
-
-
Summons, R.E.1
Bradley, A.S.2
Jahnke, L.L.3
Waldbauer, J.R.4
-
169
-
-
34247526437
-
Ptdlns(4,5)P-2 turnover is required for multiple stages during clathrin- and actin-dependent endocytic internalization
-
Sun, Y. D., Carroll, S., Kaksonen, M., Toshima, J. Y., and Drubin, D. G. (2007). Ptdlns(4,5)P-2 turnover is required for multiple stages during clathrin- and actin-dependent endocytic internalization. J. Cell Biol. 177, 355-367. doi: 10.1083/jcb.200611011
-
(2007)
J. Cell Biol.
, vol.177
, pp. 355-367
-
-
Sun, Y.D.1
Carroll, S.2
Kaksonen, M.3
Toshima, J.Y.4
Drubin, D.G.5
-
170
-
-
0016761879
-
Regulation of phospholipid biosynthesis in isolated rat hepatocytes: effect of different substrates
-
Sundler, R., and Akesson, B. (1975). Regulation of phospholipid biosynthesis in isolated rat hepatocytes: effect of different substrates. J. Biol. Chem. 250, 3359-3367.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 3359-3367
-
-
Sundler, R.1
Akesson, B.2
-
171
-
-
0025689903
-
The effect of salinity on the phase behavior of purified phosphatidylethanolamine and phosphatidylglycerol isolated from a moderately halophilic eubacterium
-
Sutton, G. C., Russell, N. J., and Quinn, P. J. (1990). The effect of salinity on the phase behavior of purified phosphatidylethanolamine and phosphatidylglycerol isolated from a moderately halophilic eubacterium. Chem. Phys. Lipids 56, 135-147. doi: 10.1016/0009-3084(90)90096-A
-
(1990)
Chem. Phys. Lipids
, vol.56
, pp. 135-147
-
-
Sutton, G.C.1
Russell, N.J.2
Quinn, P.J.3
-
172
-
-
78149240475
-
Regulation of the hypoxic response in Candida albicans
-
Synnott, J. M., Guida, A., Mulhern-Haughey, S., Higgins, D. G., and Butler, G. (2010). Regulation of the hypoxic response in Candida albicans. Eukaryot. Cell 9, 1734-1746. doi: 10.1128/EC.00159-10
-
(2010)
Eukaryot. Cell
, vol.9
, pp. 1734-1746
-
-
Synnott, J.M.1
Guida, A.2
Mulhern-Haughey, S.3
Higgins, D.G.4
Butler, G.5
-
173
-
-
10444278093
-
Expression of glutathione S-transferase and peptide methionine sulphoxide reductase in Ochrobactrum anthropi is correlated to the production of reactive oxygen species caused by aromatic substrates
-
Tamburro, A., Robuffo, I., Heipieper, H. J., Allocati, N., Rotilio, D., Di Ilio, C., et al. (2004). Expression of glutathione S-transferase and peptide methionine sulphoxide reductase in Ochrobactrum anthropi is correlated to the production of reactive oxygen species caused by aromatic substrates. FEMS Microbiol. Lett. 241, 151-156. doi: 10.1016/j.femsle.2004.10.013
-
(2004)
FEMS Microbiol. Lett.
, vol.241
, pp. 151-156
-
-
Tamburro, A.1
Robuffo, I.2
Heipieper, H.J.3
Allocati, N.4
Rotilio, D.5
Di Ilio, C.6
-
174
-
-
0029044929
-
Mild chemical deglycosylation of horseradish peroxidase yields a fully active, homogeneous enzyme
-
Tams, J. W., and Welinder, K. G. (1995). Mild chemical deglycosylation of horseradish peroxidase yields a fully active, homogeneous enzyme. Anal. Biochem. 228, 48-55. doi: 10.1006/abio.1995.1313
-
(1995)
Anal. Biochem.
, vol.228
, pp. 48-55
-
-
Tams, J.W.1
Welinder, K.G.2
-
175
-
-
0032977201
-
Adapting protein solubility by glycosylation: N-glycosylation mutants of Coprinus cinereus peroxidase in salt and organic solutions
-
Tams, J. W., Vind, J., and Welinder, K. G. (1999). Adapting protein solubility by glycosylation: N-glycosylation mutants of Coprinus cinereus peroxidase in salt and organic solutions. Biochim. Biophys. Acta Prot. Struct. Mol. Enzymol. 1432, 214-221. doi: 10.1016/S0167-4838(99)00103-X
-
(1999)
Biochim. Biophys. Acta Prot. Struct. Mol. Enzymol.
, vol.1432
, pp. 214-221
-
-
Tams, J.W.1
Vind, J.2
Welinder, K.G.3
-
176
-
-
0031401210
-
Enzymes of the primary phosphatidylethanolamine biosynthetic pathway in postgermination Castor bean endosperm: developmental profiles and partial purification of the mitochondrial CTP: ethanolaminephosphate cytidylyltransferase
-
Tang, F. Q., and Moore, T. S. (1997). Enzymes of the primary phosphatidylethanolamine biosynthetic pathway in postgermination Castor bean endosperm: developmental profiles and partial purification of the mitochondrial CTP: ethanolaminephosphate cytidylyltransferase. Plant Physiol. 115, 1589-1597. doi: 10.1104/pp.115.4.1589
-
(1997)
Plant Physiol.
, vol.115
, pp. 1589-1597
-
-
Tang, F.Q.1
Moore, T.S.2
-
177
-
-
33645222762
-
Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast
-
Todd, B. L., Stewart, E. V., Burg, J. S., Hughes, A. L., and Espenshade, P. J. (2006). Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast. Mol. Cell. Biol. 26, 2817-2831. doi: 10.1128/MCB.26.7.2817-2831.2006
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 2817-2831
-
-
Todd, B.L.1
Stewart, E.V.2
Burg, J.S.3
Hughes, A.L.4
Espenshade, P.J.5
-
178
-
-
84946218551
-
Proteomic responses to environmentally induced oxidative stress
-
Tomanek, L. (2015). Proteomic responses to environmentally induced oxidative stress. J. Exp. Biol. 218, 1867-1879. doi: 10.1242/jeb.116475
-
(2015)
J. Exp. Biol.
, vol.218
, pp. 1867-1879
-
-
Tomanek, L.1
-
179
-
-
38049138593
-
Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis
-
Tran, L.-S. P., Urao, T., Qin, F., Maruyama, K., Kakimoto, T., Shinozaki, K., et al. (2007). Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 104, 20623-20628. doi: 10.1073/pnas.0706547105
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 20623-20628
-
-
Tran, L.-S.P.1
Urao, T.2
Qin, F.3
Maruyama, K.4
Kakimoto, T.5
Shinozaki, K.6
-
180
-
-
0000642864
-
The sterol and phospholipid composition of the salt-tolerant yeast Debaryomyces hansenii grown at various concentrations of NaCl
-
Tunblad-Johansson, I., Andre, L., and Adler, L. (1987). The sterol and phospholipid composition of the salt-tolerant yeast Debaryomyces hansenii grown at various concentrations of NaCl. Biochim. Biophys. Acta 921, 116-123. doi: 10.1016/0005-2760(87)90177-9
-
(1987)
Biochim. Biophys. Acta
, vol.921
, pp. 116-123
-
-
Tunblad-Johansson, I.1
Andre, L.2
Adler, L.3
-
181
-
-
34249038335
-
Salt stress and plasma-membrane fluidity in selected extremophilic yeasts and yeast-like fungi
-
Turk, M., Abramovic, Z., Plemenitaš, A., and Gunde-Cimerman, N. (2007). Salt stress and plasma-membrane fluidity in selected extremophilic yeasts and yeast-like fungi. FEMS Yeast Res. 7, 550-557. doi: 10.1111/j.1567-1364.2007.00209.x
-
(2007)
FEMS Yeast Res.
, vol.7
, pp. 550-557
-
-
Turk, M.1
Abramovic, Z.2
Plemenitaš, A.3
Gunde-Cimerman, N.4
-
182
-
-
4644332290
-
Salt-induced changes in lipid composition and membrane fluidity of halophilic yeast-like melanized fungi
-
Turk, M., Méjanelle, L., Šentjurc, M., Grimalt, J. O., Gunde-Cimerman, N., and Plemenitaš, A. (2004). Salt-induced changes in lipid composition and membrane fluidity of halophilic yeast-like melanized fungi. Extremophiles 8, 53-61. doi: 10.1007/s00792-003-0360-5
-
(2004)
Extremophiles
, vol.8
, pp. 53-61
-
-
Turk, M.1
Méjanelle, L.2
Šentjurc, M.3
Grimalt, J.O.4
Gunde-Cimerman, N.5
Plemenitaš, A.6
-
183
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
Tusnady, G. E., and Simon, I. (2001). The HMMTOP transmembrane topology prediction server. Bioinformatics 17, 849-850. doi: 10.1093/bioinformatics/17.9.849
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
Tusnady, G.E.1
Simon, I.2
-
184
-
-
0029030855
-
ATF-2 is preferentially activated by stress-activated protein kinases to mediate c-jun induction in response to genotoxic agents
-
van Dam, H., Wilhelm, D., Herr, I., Steffen, A., Herrlich, P., and Angel, P. (1995). ATF-2 is preferentially activated by stress-activated protein kinases to mediate c-jun induction in response to genotoxic agents. EMBO J. 14, 1798-1811.
-
(1995)
EMBO J.
, vol.14
, pp. 1798-1811
-
-
van Dam, H.1
Wilhelm, D.2
Herr, I.3
Steffen, A.4
Herrlich, P.5
Angel, P.6
-
185
-
-
0031858428
-
Concepts and principles of O-linked glycosylation
-
Van den Steen, P., Rudd, P. M., Dwek, R. A., and Opdenakker, G. (1998). Concepts and principles of O-linked glycosylation. Crit. Rev. Biochem. Mol. Biol. 33, 151-208. doi: 10.1080/10409239891204198
-
(1998)
Crit. Rev. Biochem. Mol. Biol.
, vol.33
, pp. 151-208
-
-
Van den Steen, P.1
Rudd, P.M.2
Dwek, R.A.3
Opdenakker, G.4
-
186
-
-
0029822171
-
Adenylyl cyclase G, an osmosensor controlling germination of Dictyostelium spores
-
van Es, S., Virdy, K. J., Pitt, G. S., Meima, M., Sands, T. W., Devreotes, P. N., et al. (1996). Adenylyl cyclase G, an osmosensor controlling germination of Dictyostelium spores. J. Biol. Chem. 271, 23623-23625. doi: 10.1074/jbc.271.39.23623
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 23623-23625
-
-
van Es, S.1
Virdy, K.J.2
Pitt, G.S.3
Meima, M.4
Sands, T.W.5
Devreotes, P.N.6
-
187
-
-
84873165069
-
Formation and function of phosphatidylserine and phosphatidylethanolamine in mammalian cells
-
Vance, J. E., and Tasseva, G. (2013). Formation and function of phosphatidylserine and phosphatidylethanolamine in mammalian cells. Biochim. Biophys. Acta Mol. Cell Biol. Lipids 1831, 543-554. doi: 10.1016/j.bbalip.2012.08.016
-
(2013)
Biochim. Biophys. Acta Mol. Cell Biol. Lipids
, vol.1831
, pp. 543-554
-
-
Vance, J.E.1
Tasseva, G.2
-
188
-
-
35348986998
-
Differential gene expression and HogI interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii
-
Vaupotic, T., and Plemenitaš, A. (2007). Differential gene expression and HogI interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii. BMC Genomics 8:280. doi: 10.1186/1471-2164-8-280
-
(2007)
BMC Genomics
, vol.8
, pp. 280
-
-
Vaupotic, T.1
Plemenitaš, A.2
-
189
-
-
0028293429
-
Substrate specificity of CTP: phosphoethanolamine cytidyltransferase purified from rat liver
-
Vermeulen, P. S., Geelen, M. J. H., and Vangolde, L. M. G. (1994). Substrate specificity of CTP: phosphoethanolamine cytidyltransferase purified from rat liver. Biochim. Biophys. Acta Lipids Lipid Metab. 1211, 343-349. doi: 10.1016/0005-2760(94)90159-7
-
(1994)
Biochim. Biophys. Acta Lipids Lipid Metab.
, vol.1211
, pp. 343-349
-
-
Vermeulen, P.S.1
Geelen, M.J.H.2
Vangolde, L.M.G.3
-
190
-
-
0021712773
-
Cell wall and phospholipid composition and their contribution to the salt tolerance of Halomonas elongata
-
Vreeland, R. H., Anderson, R., and Murray, R. G. E. (1984). Cell wall and phospholipid composition and their contribution to the salt tolerance of Halomonas elongata. J. Bacteriol. 160, 879-883.
-
(1984)
J. Bacteriol.
, vol.160
, pp. 879-883
-
-
Vreeland, R.H.1
Anderson, R.2
Murray, R.G.E.3
-
191
-
-
0025876221
-
Phosphatidylethanolamine synthesis by castor bean endosperm: intracellular distribution and characteristics of CTP: ethanolaminephosphate cytidyltransferase
-
Wang, X. M., and Moore, T. S. (1991). Phosphatidylethanolamine synthesis by castor bean endosperm: intracellular distribution and characteristics of CTP: ethanolaminephosphate cytidyltransferase. J. Biol. Chem. 266, 19981-19987.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 19981-19987
-
-
Wang, X.M.1
Moore, T.S.2
-
192
-
-
34548501747
-
Natural history and evolutionary principles of gene duplication in fungi
-
Wapinski, I., Pfeffer, A., Friedman, N., and Regev, A. (2007). Natural history and evolutionary principles of gene duplication in fungi. Nature 449, 54-61. doi: 10.1038/nature06107
-
(2007)
Nature
, vol.449
, pp. 54-61
-
-
Wapinski, I.1
Pfeffer, A.2
Friedman, N.3
Regev, A.4
-
193
-
-
57549087957
-
Regions of the amino terminus of the P2X(1) receptor required for modification by phorbol ester and mGluR1 alpha receptors
-
Wen, H., and Evans, R. J. (2009). Regions of the amino terminus of the P2X(1) receptor required for modification by phorbol ester and mGluR1 alpha receptors. J. Neurochem. 108, 331-340. doi: 10.1111/j.1471-4159.2008.05761.x
-
(2009)
J. Neurochem.
, vol.108
, pp. 331-340
-
-
Wen, H.1
Evans, R.J.2
-
194
-
-
30344437302
-
Functional characterisation of the iron superoxide dismutase gene repertoire in Trypanosoma brucei
-
Wilkinson, S. R., Prathalingam, S. R., Taylor, M. C., Ahmed, A., Horn, D., and Kelly, J. M. (2006). Functional characterisation of the iron superoxide dismutase gene repertoire in Trypanosoma brucei. Free Radic. Biol. Med. 40, 198-209. doi: 10.1016/j.freeradbiomed.2005.06.022
-
(2006)
Free Radic. Biol. Med.
, vol.40
, pp. 198-209
-
-
Wilkinson, S.R.1
Prathalingam, S.R.2
Taylor, M.C.3
Ahmed, A.4
Horn, D.5
Kelly, J.M.6
-
195
-
-
0025766081
-
Phospholipid transfer proteins
-
Wirtz, K. W. A. (1991). Phospholipid transfer proteins. Annu. Rev. Biochem. 60, 73-99. doi: 10.1146/annurev.bi.60.070191.000445
-
(1991)
Annu. Rev. Biochem.
, vol.60
, pp. 73-99
-
-
Wirtz, K.W.A.1
-
196
-
-
0036489645
-
Heterologous expression and biochemical characterization of an NAD(P)H: quinone oxidoreductase from the hemiparasitic plant Triphysaria versicolor
-
Wrobel, R. L., Matvienko, M., and Yoder, J. I. (2002). Heterologous expression and biochemical characterization of an NAD(P)H: quinone oxidoreductase from the hemiparasitic plant Triphysaria versicolor. Plant Physiol. Biochem. 40, 265-272. doi: 10.1016/S0981-9428(02)01361-X
-
(2002)
Plant Physiol. Biochem.
, vol.40
, pp. 265-272
-
-
Wrobel, R.L.1
Matvienko, M.2
Yoder, J.I.3
-
197
-
-
84986899405
-
On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp
-
Xu, F., Jerlström-Hultqvist, J., Kolisko, M., Simpson, A. G. B., Roger, A. J., Svärd, S. G., et al. (2016). On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. BMC Biol. 14:62. doi: 10.1186/s12915-016-0284-z
-
(2016)
PC1. BMC Biol.
, vol.14
, pp. 62
-
-
Xu, F.1
Jerlström-Hultqvist, J.2
Kolisko, M.3
Simpson, A.G.B.4
Roger, A.J.5
Svärd, S.G.6
-
198
-
-
0029950683
-
Sterol esterification in yeast: a two-gene process
-
Yang, H. Y., Bard, M., Bruner, D. A., Gleeson, A., Deckelbaum, R. J., Aljinovic, G., et al. (1996). Sterol esterification in yeast: a two-gene process. Science 272, 1353-1356. doi: 10.1126/science.272.5266.1353
-
(1996)
Science
, vol.272
, pp. 1353-1356
-
-
Yang, H.Y.1
Bard, M.2
Bruner, D.A.3
Gleeson, A.4
Deckelbaum, R.J.5
Aljinovic, G.6
-
199
-
-
0010471495
-
Cellular defenses against damage from reactive oxygen species
-
Yu, B. P. (1994). Cellular defenses against damage from reactive oxygen species. Physiol. Rev. 74, 139-162.
-
(1994)
Physiol. Rev.
, vol.74
, pp. 139-162
-
-
Yu, B.P.1
-
200
-
-
3042534011
-
Dynamic O-GlcNAc modification of nucleocytoplasmic proteins in response to stress-a survival response of mammalian cells
-
Zachara, N. E., O'Donnell, N., Cheung, W. D., Mercer, J. J., Marth, J. D., and Hart, G. W. (2004). Dynamic O-GlcNAc modification of nucleocytoplasmic proteins in response to stress-a survival response of mammalian cells. J. Biol. Chem. 279, 30133-30142. doi: 10.1074/jbc.M403773200
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 30133-30142
-
-
Zachara, N.E.1
O'Donnell, N.2
Cheung, W.D.3
Mercer, J.J.4
Marth, J.D.5
Hart, G.W.6
-
201
-
-
84884567083
-
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent
-
Zajc, J., Liu, Y., Dai, W., Yang, Z., Hu, J., Gostincar, C., et al. (2013). Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent. BMC Genomics 14:617. doi: 10.1186/1471-2164-14-617
-
(2013)
BMC Genomics
, vol.14
, pp. 617
-
-
Zajc, J.1
Liu, Y.2
Dai, W.3
Yang, Z.4
Hu, J.5
Gostincar, C.6
-
202
-
-
33751555460
-
Geoalkalibacter ferrihydriticus gen
-
Zavarzina, D. G., Kolganova, T. V., Boulygina, E. S., Kostrikina, N. A., Tourova, T. P., and Zavarzin, G. A. (2006). Geoalkalibacter ferrihydriticus gen. nov sp nov., the first alkaliphilic representative of the family Geobacteraceae, isolated from a soda lake. Microbiology 75, 673-682. doi: 10.1134/S0026261706060099
-
(2006)
nov sp nov., the first alkaliphilic representative of the family Geobacteraceae, isolated from a soda lake. Microbiology
, vol.75
, pp. 673-682
-
-
Zavarzina, D.G.1
Kolganova, T.V.2
Boulygina, E.S.3
Kostrikina, N.A.4
Tourova, T.P.5
Zavarzin, G.A.6
|