A low resolution model for the interaction of G proteins with G protein-coupled receptors

Protein Engineering

Volumn 12, Issue 12, 1999, Pages 1087-1095

  Oliveira, L ^a   Paiva, A C M ^a   Vriend, G ^b  

^a FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

G protein interaction; GPCR; Model

Indexed keywords

ARGININE; G PROTEIN COUPLED RECEPTOR; GUANINE NUCLEOTIDE BINDING PROTEIN;

ARTICLE; CARBOXY TERMINAL SEQUENCE; HYDROPHOBICITY; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION;

EID: 0033452126     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/12.12.1087     Document Type: Article

References (105)

1. Acharya, S. and Karnik, S.S. (1996) J. Biol. Chem., 271, 25406-25411.
2. Acharya, S., Saad, Y. and Karnik, S.S. (1997) J. Biol. Chem., 272, 6519-6524.
3. Altenbach, C., Cai, K., Khorana, H.G. and Hubbell, W.L. (1999) Biochemistry, 38, 7931-7937.
4. Arnis, K. and Sakmar, T.P. (1993) Biochemistry, 32, 7229-7236.
5. Arnis, S., Fahmy, K., Hofmann, K.P. and Sakmar, T.P. (1994) J. Biol. Chem., 269, 23879-23881.
6. Ashkenazi, A., Winslow, J.W., Peralta, E.G., Peterson, G.L., Schimerlik, M.I., Capon, D.J. and Ramachandran, J. (1987) Science, 238, 672-675.
7. Baldwin, J.M., Schertler, G.F.X. and Unger, V.M. (1997) J. Mol. Biol., 272, 144-164.
8. Barak, L.S., Tiberi, M., Freedman, N.J., Kwatra, M.M., Lefkowitz, R.J. and Caron, M.G. (1994) J. Biol. Chem., 269, 2790-2795.
9. Barroso, M. and Sztul, E.S. (1994) J. Cell Biol., 124, 83-100.
10. Bohm, S.K., Khitin, L.M., Smeekens, S.P., Grady, E.F., Payan, D.G. and Bunnett, N.W. (1997) J. Biol. Chem., 272, 2363-2372.
11. Bourne, H.R. (1997) Curr. Opin. Cell. Biol. 9, 134-142.
12. Cai, K., Klein-Seetharaman, J., Farrens, D., Zhang, C., Altenbach, C., Hubbell, W.L. and Khorana, H.G. (1999) Biochemistry, 38, 7925-79230.
13. Chabre, O., Conklin, B.R., Lin, H.Y., Lodish, H.F., Wilson, E., Ives, H.E., Catanzariti, L., Hemmings, B.A. and Bourne, H.R. (1992) Mol. Endocrinol., 6, 551-556.
14. Chen, C., Zheng, B., Han, J. and Lin, S.C. (1997) J. Biol. Chem., 272, 8679-8685.
15. Clawges, H.M., Depree, K.M., Parker, E.M. and Graber, S.G. (1997) Biochemistry, 36, 12930-12938.
16. Cohen, G.B., Tong, Y. Robinson, P.R. and Oprian, D.D. (1993) Biochemistry, 32, 6111-6115.
17. Conklin, B.R., Farfel, Z., Lustig, K.D., Julius, D. and Bourne, H.R. (1993) Nature, 363, 274-276.
18. Cote, M., Payet, M.D., Dufour, M.N., Guillon, G. and Gallo-Payet, N. (1997) Endocrinology, 138, 3299-3307.
19. Cotecchia, S., Kobilka, B.K., Daniel, K.W., Nolan, R.D., Lapetina, E.Y., Caron, M.G., Lefkowitz, R.J. and Regan, J.W. (1990) J. Biol. Chem., 265, 63-69.
20. Daaka, Y., Luttrell, L.M. and Lefkowitz, R.J. (1997) Nature, 389, 88-91.
21. De Vos, A.M., Tong, L., Milburn, M.V., Matias, P.M., Jancarik, J., Noguchi, S., Nishimura, S., Miura, K., Ohtsuka, E. and Kim, S.H. (1988) Science, 239, 888-893.
22. de Weerd, W.F. and Leeb-Lundberg, L.M. (1997) J. Biol. Chem., 272, 17858-17866.
23. Denker, B.M., Schmidt, C.J. and Neer, E. (1992) J. Biol. Chem., 267, 9998-10002.
24. Denker, B.M., Boutin, P.M. and Neer, E. (1995) Biochemistry, 34, 5544-5553.
25. Dohlman, H.G., Caron, M.G. and Lefkowitz, R.J. (1987) Biochemistry, 26, 2657-2664.
26. Dohlman, H.G., Thorner, J., Caron, M.G. and Lefkowitz, R.J. (1991) Annu. Rev. Biochem., 60, 653-688.
27. Dratz, E.A, Furstenau, J.E., Lambert, C.G., Thireault, D.L., Rarick, H., Schepers, T., Pakhlevaniants, S. and Hamm, H.E. (1993) Nature, 363, 276-281.
28. Druey, K.M., Blumer, K.J., Kang, V.H. and Kehrl, M. (1996) Nature, 379, 742-746.
29. Eason, M.G., Kurose, H., Holt, B.D., Raymond, J.R. and Liggett, S.B. (1992) J. Biol. Chem., 267, 15795-15801.
30. Ernst, O.P., Hofmann, K.P. and Sakmar, T.P. (1995) J. Biol. Chem., 270, 10580-10586.
31. Farahbakhsh, Z.T., Ridge, K.D., Khorana, H.G. and Hubbell, W.L. (1995) Biochemistry, 34, 8812-8819.
32. Ford, C.E., Skiba, N.P., Bae, H., Daaka, Y., Reuveny, E., Shekter, L.R., Rosal, R., Weng, G., Yang, C.S., Iyengar, R., Miller, R.J., Jan, L.Y., Lefkowitz, R.J. and Hamm, H.E. (1998) Science, 280, 1271-1274.
33. Franke, R.R., Konig, B., Sakmar, T.P., Khorana, H.G. and Hofmann, K.P. (1990) Science, 250, 123-125.
34. Franzoni, L., Nicastro, G., Pertinhez, T.A., Tato, M., Nakaie, C.R., Paiva, A.C.M., Schreier, S. and Spisni, A. (1997) J. Biol. Chem., 212, 9734-9741.
35. Giesberts, A.N., van Ginneken, M., Gorter, G., Lapetina, E.G., Akkerman, J.W. and van Willingen, G. (1997) Biochem. Biophys. Res. Commun., 234, 439-444.
36. Go, W.Y., Holicky, E.L., Hadac, E.M., Rao, R.V., Miller, L.J. (1998) Am. J. Physiol., 275, G56-G62.
37. Gobel, U., Sander, C., Schneider, R. and Valencia, A. (1994) Protein Struct. Funct. Genet., 18, 309-317.
38. Grishina, G. and Berlot, C.H. (1998) J. Biol. Chem., 273, 15053-15060.
39. Haga, T., Ikegaya, T. and Haga, K. (1990) Jpn. Circ. J., 54, 1176-1184.
40. Hamilton, S.E. and Nathanson, N.M. (1997) Biochem. Biophys. Res. Commun., 234, 1-7.
41. Hamm, H.E, Deretic, D., Arendt, A., Hargrave, P.A., Koenig, B. and Hoffman, K.P. (1988) Science, 241, 832-835.
42. Harder, T. and Simons, K. (1997) Curr. Opin. Cell. Biol., 4, 534-542.
43. Hasegawa, H., Negishi, M., Katoh, H. and Ichikawa, A. (1997) Biochem. Biophys. Res. Commun., 234, 631-636.
44. Heding, A., Vrecl, M., Bogerd, J., McGregor, A., Sellar, R., Taylor, P.L. and Eidne, K.A. (1998) J. Biol. Chem., 273, 11472-11477.
45. Herrlich, A., Kuhn, B., Grosse, R., Schmid, A., Schultz, G. and Gudermann, T. (1996) J. Biol. Chem., 271, 16764-16772.
46. Hom, F., Weare, J., Beukers, M.W., Horsch, S., Bairoch, A., Chen, W., Edvardsen, O., Campagne, F. and Vriend, G. (1998) Nucleic Acids Res., 26, 275-279.
47. Hukovic, N., Panetta, R., Kumar, U., Rocheville, M. and Patel, Y.C. (1998) J. Biol. Chem., 273, 21416-21422.
48. Iiri, T., Farfel, Z. and Bourne, H.R. (1998) Nature, 394, 35-38.
49. Kallal, L. and Kurjan, J. (1997) Mol. Cell. Biol., 17, 2897-2907.
50. Kenakin, T. (1995) Trends Pharmacol. Sci., 16, 188-192.
51. Khorana, H.G. (1992) J. Biol. Chem., 267, 1-4.
52. Kisselev, O.G., Ermolaeva, M.V. and Gautam, N. (1994) J. Biol. Chem., 269, 21399-21402.
53. Kisselev, O.G., Kao, J., Ponder, J.W., Fann, Y.C., Gautam, N. and Marshall, G.R. (1998) Proc. Natl Acad. Sci. USA, 95, 4270-4275.
54. Kisselev, O.G., Meyer, C.K., Heck, M., Ernst, O.P. and Hofmann, K.P. (1999) Proc. Natl Acad. Sci. USA, 96, 4898-4903.
55. Koelle, M.R. and Horvitz, H.R. (1996) Cell, 84, 115-125.
56. Kostenis, E., Conklin, B.R. and Wess, J. (1997) Biochemistry, 36, 1487-1495.
57. Kuipers, W., Oliveira, L., Paiva, A.C.M., Rippmann, F., Sander, C., Vriend., G., Kruese, C.G., van Wijngaarden, I. and IJzerman, A.P. (1995) In Findlay, J. (ed.), Membrane Protein Models, Chapter 2. BIOS Science Publishers Ltd, Oxford.
58. Lambright, D.G., Sondek, J., Bohm, J., Skiba, N.P., Hamm, H.E. and Sigler, P.B. (1996) Nature, 379, 311-319.
59. Laporte, S.A., Servant, G., Richard, D.E., Escher, E., Guillemette, G. and Leduc, R. (1996) Mol. Pharmacol., 49, 89-95.
60. Laugwitz, K.L., Allgeier, A., Offermanns, S., Spicher, K., Van Sande, J., Dumont, J.E. and Schultz, G. (1996) Proc. Natl Acad. Sci. USA, 93, 116-120.
61. Lichtarge, O., Bourne, H.R. and Cohen, F.E. (1996) Proc. Natl Acad. Sci. USA, 93, 7507-7511.
62. Loew, A., Ho, Y.-K., Blundell, T. and Bax, B. (1998) Structure, 6, 1007-1019.
63. Lu, Z.L., Curtis, C.A., Jones, P.G., Pavia, J. and Hulme, E.C. (1997) Mol. Pharmacol, 51, 234-241.
64. Mahmoudian, M. (1997) J. Mol. Graphics, 15, 149-153.
65. Marsh, S.R., Grishina, G., Wilson, P.T. and Berlot, C.H. (1998) Mol. Pharmacol., 53, 981-990.
66. Mixon, M.B., Lee, E., Coleman, D.E., Berghuis, A.M., Gilman, A.G. and Sprang, S.R. (1995) Science, 270, 954-960.
67. Murthy, K.S. and Makhlouf, G.M. (1997) J. Biol. Chem., 272, 21317-21324.
68. Namba, T., Sugimoto, Y., Negishi, M., Irie, A., Ushikubi, F., Kakizuka, A., Ito, S., Ichikawa, A. and Narumiya, S. (1993) Nature, 365, 166-170.
69. Nederkoorn, P.H., Davies, R.H., Timms, D. and Timmerman, H. (1998) Receptors and Channels, 5, 91-97.
70. Neer, E.J. (1995) Cell, 80, 249-257.
71. Neubig, R.R. (1994) FASEB J., 8, 939-946.
72. Noel, J.P., Hamm, H.E., Sigler, P.B. (1993) Nature, 366, 654-663.
73. O'Dowd, B.F., Hnatowich, M., Regan, J.W., Leader, W.M., Caron, M.G. and Lefkowitz, R.J. (1988) J. Biol. Chem., 263, 15985-15992.
74. Ohyama, K., Yamano, Y., Chaki, S., Kondo, T. and Inagami, T. (1992) Biochem. Biophys. Res. Commun., 189, 677-683.
75. Olah, M.E. (1997) J. Biol. Chem., 272, 337-344.
76. Oldenhof, J., Vickery, R., Anafi, M., Oak, J., Ray, A., Schoots, O., Pawson, T., von Zastrow, M. and Van Tol, H.H. (1998) Biochemistry, 37, 15726-15736.
77. Oliveira, L., Paiva, A.C.M. and Vriend, G. (1993) J. Comput. Aided Mol. Design, 7, 649-658.
78. Oliveira, L., Paiva, A.C.M., Sander, C. and Vriend, G. (1994) Trends Pharmacol. Sci., 15, 170-172.
79. Onrust, R., Herzmark, P., Chi, P., Garcia, P.D., Lichtarge, O., Kingsley, C. and Bourne, H.R. (1997) Science, 275, 381-384.
80. Palczewski, K. (1997) Eur. J. Biochem., 248, 261-269.
81. Prather, P.L., Loh, H.H. and Law, P.Y. (1994) Mol. Pharmacol., 45, 997-1003.
82. Sano, T., Ohyama, K., Yamano, Y., Nakagomi, Y., Nakazawa, S., Kikyo, M., Shirai, H., Blank, J.S., Exton, J.H. and Inagami, T. (1997) J. Biol. Chem., 272, 23631-23636.
83. Sato, M., Kataoka, R., Gingus, J., Wilcox, M., Hildebrandt, J.D. and Lanier, A.M. (1995) J. Biol. Chem., 270, 15269-15277.
84. Saunders, C. and Limbird, L.E. (1997) J. Biol. Chem., 272, 19035-19045.
85. Saunders, C., Keefer, J.R., Bonner, C.A. and Limbird, L.E. (1998) J. Biol. Chem., 273, 24196-24206.
86. Scheer, A., Fanelli, F., Costa, T., De Benedetti, P.G. and Cotecchia, S. (1996) EMBO J., 15, 3566-3578.
87. Schertler, G.F. and Hargrave, P.A. (1995) Proc. Natl Acad. Sci. USA, 92, 11578-11582.
88. Schertler, G.F., Villa, C. and Henderson, R. (1993) Nature, 362, 770-772.
89. Shi, W., Sports, C.D., Raman, D., Shirakawa, S., Osawa, S. and Weiss, E.R. (1998) Biochemistry, 37, 4869-4874.
90. Siderovski, D.P., Hessel, A., Chung, S., Mak, T.W. and Tyers, M. (1996) Curr. Biol., 6, 211-212.
91. Sprang, S.R. (1997) Annu. Rev. Biochem., 66, 639-678.
92. Strader, C.D., Fong, T.M., Tota, M.B. and Underwood, D. (1994) Annu. Rev. Biochem., 63, 101-132.
93. Sunahara, R.K., Tesmer, J.J., Gilman, A.G. and Sprang, S.R. (1997) Science, 278, 1943-1947.
94. Tanaka, T.K., Kohno, T., Kinoshita, S., Mukai, H., Itoh, H., Ohya, M., Miyazawa, T., Higashijima, T. and Wakamatsu, K. (1998) J. Biol. Chem., 273, 3247-3252.
95. Thomas, W.G., Thekkumkara, T.J., Motel, T.J. and Baker, K.M. (1995a) J. Biol. Chem., 270, 207-213.
96. Thomas, W.G., Baker, K.M., Motel, T.J. and Thekkumkara, J.J. (1995b) J. Biol. Chem., 270, 22153-22159.
97. Verrall, S., Ishii, M., Chen, M., Wang, L., Tram, T. and Coughlin, S.R. (1997) J. Biol. Chem., 212, 6898-6902.
98. Vriend, G. (1990) J. Mol. Graphics, 8, 52-56.
99. Wang, J., Zheng, J., Anderson, J.L. and Toews, M.L. (1997) Mol. Pharmacol., 52, 306-313.
100. Wess, J. (1997) FASEB, 11, 346-354.
101. Wess, J., Liu, J., Blin, N., Yun, J., Lerche, C. and Kostenis, E. (1997) Life Sci., 60, 1007-1014.
102. Woon, C.W., Soparkar, S., Heasley, L. and Johnson, G.L. (1989) J. Biol. Chem., 264, 5687-5694.
103. Wozniak, M., Keefer, J.R., Saunders, C. and Limbird, L.E. (1997) J. Recept. Signal Transduct. Res., 17, 373-383.
104. Yang, K., Farrens, D.L., Altenbach, C., Farahbakhsh, Z.T., Hubbell, W.L. and Khorana, H.G. (1996) Biochemistry, 35, 14040-14046.
105. Yeagle, P.L., Alderfer, J.L. and Albert, A.D. (1997) Biochemistry, 36, 9649-9654.