-
1
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul, S.F. (1991) Amino acid substitution matrices from an information theoretic perspective. J. Mol. Biol., 219, 555-565.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 555-565
-
-
Altschul, S.F.1
-
2
-
-
0029889221
-
Local alignment statistics
-
Altschul, S.F. and Gish, W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E. W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0027174134
-
Prediction of protein secondary structure by the hidden Markov model
-
Asai, K., Hayamizu, S. and Handa, K. (1993) Prediction of protein secondary structure by the hidden Markov model. Comput. Applic. Biosci., 9, 141-146.
-
(1993)
Comput. Applic. Biosci.
, vol.9
, pp. 141-146
-
-
Asai, K.1
Hayamizu, S.2
Handa, K.3
-
6
-
-
0031813405
-
The PRINTS protein fingerprint database in its fifth year
-
Attwood, T.K., Beck, M.E., Flower, D.R , Scordis, P. and Selley, J.N. (1998) The PRINTS protein fingerprint database in its fifth year. Nucleic Acids Res., 26, 304-308.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 304-308
-
-
Attwood, T.K.1
Beck, M.E.2
Flower, D.R.3
Scordis, P.4
Selley, J.N.5
-
7
-
-
0030771126
-
The PROSITE database, its status in 1997
-
Bairoch, A., Bucher, P. and Hofmann, K. (1997) The PROSITE database, its status in 1997. Nucleic Acids Res , 25, 217-221.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 217-221
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
9
-
-
0030266582
-
Hybrid modeling, HMM/NN architectures and protein applications
-
Baldi, P. and Chauvin, Y. (1996) Hybrid modeling, HMM/NN architectures and protein applications. Neural Comput., 8, 1541-1565.
-
(1996)
Neural Comput.
, vol.8
, pp. 1541-1565
-
-
Baldi, P.1
Chauvin, Y.2
-
10
-
-
0028011075
-
Hidden Markov models of biological primary sequence information
-
Baldi, P., Chauvin, Y., Hunkapiller, T. and McClure, M.A. (1994) Hidden Markov models of biological primary sequence information. Proc. Natl Acad. Sci. USA, 91, 1059-1063.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 1059-1063
-
-
Baldi, P.1
Chauvin, Y.2
Hunkapiller, T.3
McClure, M.A.4
-
11
-
-
0030889183
-
Scoring hidden Markov models
-
Barrett, C., Hughey, R. and Karplus, K. (1997) Scoring hidden Markov models. Comput. Applic. Biosci., 13, 191-199.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 191-199
-
-
Barrett, C.1
Hughey, R.2
Karplus, K.3
-
12
-
-
0025303764
-
Protein multiple sequence alignment and flexible pattern matching
-
Barton, G.J. (1990) Protein multiple sequence alignment and flexible pattern matching. Methods Enzymol., 183, 403-427.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 403-427
-
-
Barton, G.J.1
-
13
-
-
0030628597
-
Dynamite: A flexible code generating language for dynamic programming methods used in sequence comparison
-
AAAI Press, Menlo Park
-
Birney, E. and Durbin, R. (1997) Dynamite: A flexible code generating language for dynamic programming methods used in sequence comparison. In Proceedings of the Fifth International Conference on Intelligent Systems in Molecular Biology, 5, 56-64. AAAI Press, Menlo Park.
-
(1997)
Proceedings of the Fifth International Conference on Intelligent Systems in Molecular Biology
, vol.5
, pp. 56-64
-
-
Birney, E.1
Durbin, R.2
-
14
-
-
0029997801
-
Applying motif and profile searches
-
Bork, P. and Gibson, T.J. (1996) Applying motif and profile searches. Methods Enzymol., 266, 162-184.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 162-184
-
-
Bork, P.1
Gibson, T.J.2
-
15
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie, J.U., Luthy, R. and Eisenberg, D. (1991) A method to identify protein sequences that fold into a known three-dimensional structure. Science, 253, 164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
16
-
-
0029856518
-
Modeling residue usage in aligned protein sequences via maximum likelihood
-
Bruno, W.J. (1996) Modeling residue usage in aligned protein sequences via maximum likelihood. Mol. Biol. Evol., 13, 1368-1374.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1368-1374
-
-
Bruno, W.J.1
-
17
-
-
0030093114
-
A flexible motif search technique based on generalized profiles
-
Bucher, P., Karplus, K., Moeri, N. and Hofmann, K. (1996) A flexible motif search technique based on generalized profiles. Comput. Chem., 20, 3-23.
-
(1996)
Comput. Chem.
, vol.20
, pp. 3-23
-
-
Bucher, P.1
Karplus, K.2
Moeri, N.3
Hofmann, K.4
-
18
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge, C. and Karlin, S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
19
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chothia, C. (1992) One thousand families for the molecular biologist. Nature, 357, 543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
20
-
-
0024557590
-
Stochastic models for heterogeneous DNA sequences
-
Churchill, G.A. (1989) Stochastic models for heterogeneous DNA sequences. Bull. Math. Biol., 51, 79-94.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 79-94
-
-
Churchill, G.A.1
-
21
-
-
0031812904
-
The ProDom database of protein domain families
-
Corpet, F., Gouzy, J. and Kahn, D. (1998) The ProDom database of protein domain families. Nucleic Acids Res., 26, 323-326.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 323-326
-
-
Corpet, F.1
Gouzy, J.2
Kahn, D.3
-
22
-
-
0031588960
-
Protein topology recognition from secondary structure sequences: Application of the hidden Markov models to the alpha class proteins
-
Di Francesco, V., Garnier, J. and Munson, P.J. (1997a) Protein topology recognition from secondary structure sequences: Application of the hidden Markov models to the alpha class proteins. J. Mol. Biol., 267, 446-463.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 446-463
-
-
Di Francesco, V.1
Garnier, J.2
Munson, P.J.3
-
23
-
-
0031301955
-
Fold recognition using predicted secondary structure sequences and hidden Markov models of protein folds
-
Di Francesco, V., Geetha, V., Garnier, J. and Munson, P.J. (1997b) Fold recognition using predicted secondary structure sequences and hidden Markov models of protein folds. Proteins, 1(Suppl.), 123-128.
-
(1997)
Proteins
, vol.1
, Issue.SUPPL.
, pp. 123-128
-
-
Di Francesco, V.1
Geetha, V.2
Garnier, J.3
Munson, P.J.4
-
24
-
-
0003516147
-
-
Cambridge University Press, Cambridge, UK
-
Durbin, R., Eddy, S.R., Krogh, A. and Mitchison, G.J. (1998) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, UK.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.J.4
-
26
-
-
1842377444
-
The SBASE protein domain library, release 5.0: A collection of annotated protein sequence segments
-
Fabian, P., Murvai, J., Vlahovicek, K., Hegyi, H. and Pongor, S. (1997) The SBASE protein domain library, release 5.0: A collection of annotated protein sequence segments. Nucleic Acids Res., 25, 240-243.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 240-243
-
-
Fabian, P.1
Murvai, J.2
Vlahovicek, K.3
Hegyi, H.4
Pongor, S.5
-
27
-
-
0030034795
-
A hidden Markov model approach to variation among sites in rate of evolution
-
Felsenstein, J. and Churchill, G. (1996) A hidden Markov model approach to variation among sites in rate of evolution. Mol. Biol. Evol., 13, 93-104.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.2
-
28
-
-
0026726481
-
Topology fingerprint approach to the inverse protein folding problem
-
Godzik, A., Kolinski, A. and Skolnick, J. (1992) Topology fingerprint approach to the inverse protein folding problem. J. Mol. Biol., 227, 227-238.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 227-238
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
29
-
-
0030601801
-
Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses
-
Goldman, N., Thorne, J.L. and Jones, D.T. (1996) Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses. J. Mol. Biol., 263, 196-208.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 196-208
-
-
Goldman, N.1
Thorne, J.L.2
Jones, D.T.3
-
30
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, A.D. and Eisenberg, D. (1987) Profile analysis: Detection of distantly related proteins. Proc. Natl Acad. Sci. USA, 84, 4355-4358.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.D.2
Eisenberg, D.3
-
31
-
-
0029962489
-
ParaMEME: A parallel implementation and a web interface for a DNA and protein motif discovery tool
-
Grundy, W.N., Bailey, T.L. and Elkan, C.P. (1996) ParaMEME: A parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput. Applic. Biosci., 12, 303-310.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 303-310
-
-
Grundy, W.N.1
Bailey, T.L.2
Elkan, C.P.3
-
32
-
-
0030853763
-
MetaMEME: Motif-based hidden Markov models of protein families
-
Grundy, W.N., Bailey, T.L., Elkan, C.P. and Baker, M.E. (1997) MetaMEME: Motif-based hidden Markov models of protein families. Comput. Applic. Biosci., 13, 397-406.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 397-406
-
-
Grundy, W.N.1
Bailey, T.L.2
Elkan, C.P.3
Baker, M.E.4
-
33
-
-
0030810993
-
Finding genes in human DNA with a hidden Markov model
-
Henderson, J., Salzberg, S. and Fasman, K. (1997) Finding genes in human DNA with a hidden Markov model. J. Comput. Biol., 4, 127-141.
-
(1997)
J. Comput. Biol.
, vol.4
, pp. 127-141
-
-
Henderson, J.1
Salzberg, S.2
Fasman, K.3
-
34
-
-
0029937427
-
Scores for sequence searches and alignments
-
Henikoff, S. (1996) Scores for sequence searches and alignments. Curr. Opin. Struct. Biol., 6, 353-360.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 353-360
-
-
Henikoff, S.1
-
35
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
36
-
-
0030660580
-
Gene families: The taxonomy of protein paralogs and chimeras
-
Henikoff, S., Greene, E.A , Pietrokovski, S., Bork, P., Attwood, T.K. and Hood, L. (1997) Gene families: The taxonomy of protein paralogs and chimeras. Science, 278, 609-614.
-
(1997)
Science
, vol.278
, pp. 609-614
-
-
Henikoff, S.1
Greene, E.A.2
Pietrokovski, S.3
Bork, P.4
Attwood, T.K.5
Hood, L.6
-
37
-
-
0031839544
-
Superior performance in protein homology detection with the Blocks database servers
-
Henikoff, S., Pietrokovski, S. and Henikoff, J.G. (1998) Superior performance in protein homology detection with the Blocks database servers. Nucleic Acids Res., 26, 309-312.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 309-312
-
-
Henikoff, S.1
Pietrokovski, S.2
Henikoff, J.G.3
-
38
-
-
0030462897
-
Parallel hardware for sequence comparison and alignment
-
Hughey, R. (1996) Parallel hardware for sequence comparison and alignment. Comput. Applic. Biosci., 12, 473-479.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 473-479
-
-
Hughey, R.1
-
39
-
-
0029887381
-
Hidden Markov models for sequence analysis: Extension and analysis of the basic method
-
Hughey, R. and Krogh, A. (1996) Hidden Markov models for sequence analysis: Extension and analysis of the basic method. Comput. Applic. Biosci., 12, 95-107.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 95-107
-
-
Hughey, R.1
Krogh, A.2
-
41
-
-
85038551253
-
-
Jongeneel, V., Junier, T., Iseli, C., Hofmann, K. and Bucher, P. (1998) INSECT and MOLLUSCS - supercomputing on the cheap. Available from http://cmpteam4.unil.ch/biocomputing/mollusc/INSECT_and_MOLLUSCS.html
-
(1998)
INSECT and MOLLUSCS - Supercomputing on the Cheap
-
-
Jongeneel, V.1
Junier, T.2
Iseli, C.3
Hofmann, K.4
Bucher, P.5
-
42
-
-
0031796215
-
Weighting hidden Markov models for maximum discrimination
-
in press
-
Karchin, R. and Hughey, R. (1998) Weighting hidden Markov models for maximum discrimination. Bioinformatics, in press.
-
(1998)
Bioinformatics
-
-
Karchin, R.1
Hughey, R.2
-
43
-
-
0031301752
-
Predicting protein structure using hidden Markov models
-
Karplus, K., Sjolander, K., Barrett, C., Cline, M., Haussler, D., Hughey, R., Holm, L. and Sander, C. (1997) Predicting protein structure using hidden Markov models. Proteins, 1(Suppl.), 134-139.
-
(1997)
Proteins
, vol.1
, Issue.SUPPL.
, pp. 134-139
-
-
Karplus, K.1
Sjolander, K.2
Barrett, C.3
Cline, M.4
Haussler, D.5
Hughey, R.6
Holm, L.7
Sander, C.8
-
45
-
-
77956964275
-
An introduction to hidden Markov models for biological sequences
-
Salzberg, S., Searls, D. and Kasif, S. (eds), Elsevier, New York
-
Krogh, A. (1998) An introduction to hidden Markov models for biological sequences. In Salzberg, S., Searls, D. and Kasif, S. (eds), Computational Methods in Molecular Biology. Elsevier, New York, pp. 45-63.
-
(1998)
Computational Methods in Molecular Biology
, pp. 45-63
-
-
Krogh, A.1
-
46
-
-
0028181441
-
Hidden Markov models in computational biology: Applications to protein modeling
-
Krogh, A., Brown, M., Mian, I.S., Sjolander, K. and Haussler, D. (1994a) Hidden Markov models in computational biology: Applications to protein modeling. J. Mol. Biol., 235, 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
47
-
-
0027944605
-
A hidden Markov model that finds genes in E.coli DNA
-
Krogh, A., Mian, I.S. and Haussler, D. (1994b) A hidden Markov model that finds genes in E.coli DNA. Nucleic Acids Res., 22, 4768-4778.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4768-4778
-
-
Krogh, A.1
Mian, I.S.2
Haussler, D.3
-
48
-
-
0029886532
-
Parametric and nonparametric linkage analysis: A unified multipoint approach
-
Kruglyak, L., Daly, M.J., Reeve-Daly, M.P. and Lander, E.S. (1996) Parametric and nonparametric linkage analysis: A unified multipoint approach. Am. J. Hum. Genet., 58, 1347-1363.
-
(1996)
Am. J. Hum. Genet.
, vol.58
, pp. 1347-1363
-
-
Kruglyak, L.1
Daly, M.J.2
Reeve-Daly, M.P.3
Lander, E.S.4
-
49
-
-
0030333286
-
A generalized hidden Markov model for the recognition of human genes in DNA
-
AAAI Press, Menlo Park
-
Kulp, D., Haussler, D., Reese, M.G. and Eeckman, F.H. (1996) A generalized hidden Markov model for the recognition of human genes in DNA. In Proceedings of the Fourth International Conference on Intelligent Systems in Molecular Biology, 4, 134-141 AAAI Press, Menlo Park.
-
(1996)
Proceedings of the Fourth International Conference on Intelligent Systems in Molecular Biology
, vol.4
, pp. 134-141
-
-
Kulp, D.1
Haussler, D.2
Reese, M.G.3
Eeckman, F.H.4
-
50
-
-
0031307020
-
Competitive assessment of protein fold recognition and alignment accuracy
-
Levitt, M. (1997) Competitive assessment of protein fold recognition and alignment accuracy. Proteins, 1(Suppl.), 92-104.
-
(1997)
Proteins
, vol.1
, Issue.SUPPL.
, pp. 92-104
-
-
Levitt, M.1
-
51
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
Lukashin, A.V. and Borodovsky, M. (1998) GeneMark.hmm: New solutions for gene finding. Nucleic Acids Res., 26, 1107-1115.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
52
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Luthy, R., Bowie, J.U. and Eisenberg, D. (1992) Assessment of protein models with three-dimensional profiles. Nature, 356, 83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
53
-
-
0029816940
-
A learning method of hidden Markov models for sequence discrimination
-
Mamitsuka, H. (1996) A learning method of hidden Markov models for sequence discrimination. J. Comput. Biol., 3, 361-373.
-
(1996)
J. Comput. Biol.
, vol.3
, pp. 361-373
-
-
Mamitsuka, H.1
-
54
-
-
0031297386
-
Critical assessment of methods of protein structure prediction (CASP): Round II
-
Moult, J., Hubbard, T., Bryant, S.H., Fidelis, K and Pedersen, J.T. (1997) Critical assessment of methods of protein structure prediction (CASP): Round II. Proteins, 1(Suppl.), 2-6.
-
(1997)
Proteins
, vol.1
, Issue.SUPPL.
, pp. 2-6
-
-
Moult, J.1
Hubbard, T.2
Bryant, S.H.3
Fidelis, K.4
Pedersen, J.T.5
-
55
-
-
0031302793
-
Distant homology recognition using structural classification of proteins
-
Murzin, A.G. and Bateman, A. (1997) Distant homology recognition using structural classification of proteins. Proteins, 1(Suppl.), 105-112.
-
(1997)
Proteins
, vol.1
, Issue.SUPPL.
, pp. 105-112
-
-
Murzin, A.G.1
Bateman, A.2
-
56
-
-
0030788541
-
Extracting protein alignment models from the sequence database
-
Neuwald, A.F., Liu, J.S., Lipman, D J. and Lawrence, C.E. (1997) Extracting protein alignment models from the sequence database. Nucleic Acids Res., 25, 1665-1677.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1665-1677
-
-
Neuwald, A.F.1
Liu, J.S.2
Lipman, D.J.3
Lawrence, C.E.4
-
57
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo, C., Jones, D.T. and Thornton, J.M. (1994) Protein superfamilies and domain superfolds. Nature, 372, 631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.1
Jones, D.T.2
Thornton, J.M.3
-
58
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W. and Lipman, D. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.1
Lipman, D.2
-
59
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner, L.R. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-286.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
60
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B. and Sander, C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol., 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
61
-
-
0030704666
-
Building human genome maps with radiation hybrids
-
Slonim, D., Kruglyak, L., Stein, L. and Lander, E. (1997) Building human genome maps with radiation hybrids. J. Comput. Biol., 4, 487-504.
-
(1997)
J. Comput. Biol.
, vol.4
, pp. 487-504
-
-
Slonim, D.1
Kruglyak, L.2
Stein, L.3
Lander, E.4
-
62
-
-
0029906607
-
Dirichlet mixtures: A method for improving detection of weak but significant protein sequence homology
-
Sjölander, K., Karplus, K., Brown, M., Hughey, R., Krogh, A., Mian, I.S. and Haussler, D. (1996) Dirichlet mixtures: A method for improving detection of weak but significant protein sequence homology. Comput. Applic. Biosci., 12, 327-345.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 327-345
-
-
Sjölander, K.1
Karplus, K.2
Brown, M.3
Hughey, R.4
Krogh, A.5
Mian, I.S.6
Haussler, D.7
-
63
-
-
0030925920
-
Pfam: A comprehensive database of protein families based on seed alignments
-
Sonnhammer, E.L., Eddy, S.R. and Durbin, R. (1997) Pfam: A comprehensive database of protein families based on seed alignments. Proteins, 28, 405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
64
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer, E.L.L., Eddy, S.R., Birney, E., Bateman, A. and Durbin, R. (1998) Pfam: Multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res., 26, 320-322.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
65
-
-
0027477526
-
Structural analysis based on state-space modeling
-
Stultz, C.M., White, J.V. and Smith, T.F. (1993) Structural analysis based on state-space modeling. Protein Sci., 2, 305-314.
-
(1993)
Protein Sci.
, vol.2
, pp. 305-314
-
-
Stultz, C.M.1
White, J.V.2
Smith, T.F.3
-
66
-
-
0031685844
-
Analysis of the position dependent amino acid probabilities and its application to the search for remote homologues
-
Sunyaev, S.R., Rodchenkov, I.V., Eisenhaber, F. and Kuznetsov, E.N. (1998) Analysis of the position dependent amino acid probabilities and its application to the search for remote homologues. In RECOMB '98, pp. 258-265.
-
(1998)
RECOMB '98
, pp. 258-265
-
-
Sunyaev, S.R.1
Rodchenkov, I.V.2
Eisenhaber, F.3
Kuznetsov, E.N.4
-
67
-
-
0031824257
-
Reduced space hidden Markov model training
-
in press
-
Tarnas, C. and Hughey, R. (1998) Reduced space hidden Markov model training. Bioinformatics, in press.
-
(1998)
Bioinformatics
-
-
Tarnas, C.1
Hughey, R.2
-
68
-
-
0022550940
-
Identification of protein sequence homology by consensus template alignment
-
Taylor, W.R. (1986) Identification of protein sequence homology by consensus template alignment. J. Mol. Biol., 188, 233-258.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 233-258
-
-
Taylor, W.R.1
-
69
-
-
0029985399
-
Combining protein evolution and secondary structure
-
Thorne, J.L., Goldman, N. and Jones, D.T. (1996) Combining protein evolution and secondary structure. Mol. Biol. Evol., 13, 666-673.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 666-673
-
-
Thorne, J.L.1
Goldman, N.2
Jones, D.T.3
-
70
-
-
0031976991
-
Late-night thoughts on the sequence annotation problem
-
Wheelan, S.J. and Boguski, M.S. (1998) Late-night thoughts on the sequence annotation problem. Genome Res., 8, 168-169.
-
(1998)
Genome Res.
, vol.8
, pp. 168-169
-
-
Wheelan, S.J.1
Boguski, M.S.2
-
71
-
-
0028181528
-
Protein classification by stochastic modeling and optimal filtering of amino-acid sequences
-
White, J.V., Stultz, C.M. and Smith, T.F. (1994) Protein classification by stochastic modeling and optimal filtering of amino-acid sequences. Math. Biosci., 119, 35-75.
-
(1994)
Math. Biosci.
, vol.119
, pp. 35-75
-
-
White, J.V.1
Stultz, C.M.2
Smith, T.F.3
-
72
-
-
0030498354
-
A protein class database organized with ProSite, protein groups and PIR, superfamilies
-
Wu, C.H., Zhao, S. and Chen, H.L. (1996) A protein class database organized with ProSite, protein groups and PIR, superfamilies. J. Comput. Biol., 3, 547-561.
-
(1996)
J. Comput. Biol.
, vol.3
, pp. 547-561
-
-
Wu, C.H.1
Zhao, S.2
Chen, H.L.3
-
73
-
-
0030310347
-
Extraction of hidden Markov model representations of signal patterns in DNA sequences
-
World Scientific, Singapore
-
Yada, T., Ishikawa, M., Tanaka, H. and Asai, K. (1996) Extraction of hidden Markov model representations of signal patterns in DNA sequences. Pac. Symp. Biocomput., World Scientific, Singapore, pp. 686-696.
-
(1996)
Pac. Symp. Biocomput.
, pp. 686-696
-
-
Yada, T.1
Ishikawa, M.2
Tanaka, H.3
Asai, K.4
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