메뉴 건너뛰기




Volumn 14, Issue 1, 2016, Pages

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: The 70 % rule

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTIC CELL; GENETICS; GENOME; HORIZONTAL GENE TRANSFER; METABOLISM; MOLECULAR EVOLUTION; PROKARYOTIC CELL;

EID: 84995794392     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/s12915-016-0315-9     Document Type: Article
Times cited : (82)

References (90)
  • 1
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: quantification and classification
    • Koonin EV, Makarova KS, Aravind L. Horizontal gene transfer in prokaryotes: quantification and classification. Annu Rev Microbiol. 2001;55:709-42.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 2
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation. Nature. 2000;405:299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 3
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle WF. Phylogenetic classification and the universal tree. Science. 1999;284:2124-8.
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 5
    • 0035827328 scopus 로고    scopus 로고
    • Microbial genes in the human genome: lateral transfer or gene loss?
    • Salzberg SL, White O, Peterson J, Eisen JA. Microbial genes in the human genome: lateral transfer or gene loss? Science. 2001;292:1903-6.
    • (2001) Science , vol.292 , pp. 1903-1906
    • Salzberg, S.L.1    White, O.2    Peterson, J.3    Eisen, J.A.4
  • 6
    • 0035927649 scopus 로고    scopus 로고
    • Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
    • Stanhope MJ, Lupas A, Italia MJ, Koretke KK, Volker C, Brown JR. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 2001;411:940-4.
    • (2001) Nature , vol.411 , pp. 940-944
    • Stanhope, M.J.1    Lupas, A.2    Italia, M.J.3    Koretke, K.K.4    Volker, C.5    Brown, J.R.6
  • 9
    • 84930632893 scopus 로고    scopus 로고
    • Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes
    • Crisp A, Boschetti C, Perry M, Tunnacliffe A, Micklem G. Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes. Genome Biol. 2015;16:50.
    • (2015) Genome Biol , vol.16 , pp. 50
    • Crisp, A.1    Boschetti, C.2    Perry, M.3    Tunnacliffe, A.4    Micklem, G.5
  • 11
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosomes: a challenge en route to a tree of genomes
    • Martin W. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays. 1999;21:99-104.
    • (1999) Bioessays , vol.21 , pp. 99-104
    • Martin, W.1
  • 13
    • 0014754463 scopus 로고
    • Genetic transfer and bacterial taxonomy
    • Jones D, Sneath PHA. Genetic transfer and bacterial taxonomy. Bacteriol Rev. 1970;34:40-81.
    • (1970) Bacteriol Rev , vol.34 , pp. 40-81
    • Jones, D.1    Sneath, P.H.A.2
  • 14
    • 80053914379 scopus 로고    scopus 로고
    • Trends and barriers to lateral gene transfer in prokaryotes
    • Popa O, Dagan T. Trends and barriers to lateral gene transfer in prokaryotes. Curr Opin Microbiol. 2011;14:615-23.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 615-623
    • Popa, O.1    Dagan, T.2
  • 15
    • 84920056771 scopus 로고
    • The significance of pneumococcal types
    • Griffith F. The significance of pneumococcal types. J Hygiene. 1928;27:113-59.
    • (1928) J Hygiene , vol.27 , pp. 113-159
    • Griffith, F.1
  • 16
    • 0011837480 scopus 로고
    • Gene recombination in the bacterium Escherichia coli
    • Tatum EL, Lederberg J. Gene recombination in the bacterium Escherichia coli. J Bacteriol. 1947;53:673-84.
    • (1947) J Bacteriol , vol.53 , pp. 673-684
    • Tatum, E.L.1    Lederberg, J.2
  • 17
    • 0001277536 scopus 로고
    • Genetic exchange in Salmonella
    • Zinder ND, Lederberg J. Genetic exchange in Salmonella. J Bacteriol. 1952;64:679-99.
    • (1952) J Bacteriol , vol.64 , pp. 679-699
    • Zinder, N.D.1    Lederberg, J.2
  • 18
    • 0016381336 scopus 로고
    • Genetic recombination in Rhodopseudomonas capsulata
    • Marrs B. Genetic recombination in Rhodopseudomonas capsulata. Proc Natl Acad Sci U S A. 1974;71:971-3.
    • (1974) Proc Natl Acad Sci U S A , vol.71 , pp. 971-973
    • Marrs, B.1
  • 19
    • 0037905748 scopus 로고    scopus 로고
    • Conjugative plasmid transfer in gram-positive bacteria
    • Grohmann E, Muth G, Espinosa M. Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev. 2003;67:277.
    • (2003) Microbiol Mol Biol Rev , vol.67 , pp. 277
    • Grohmann, E.1    Muth, G.2    Espinosa, M.3
  • 20
    • 28544449319 scopus 로고    scopus 로고
    • The ins and outs of DNA transfer in bacteria
    • Chen I, Christie PJ, Dubnau D. The ins and outs of DNA transfer in bacteria. Science. 2005;310:1456-60.
    • (2005) Science , vol.310 , pp. 1456-1460
    • Chen, I.1    Christie, P.J.2    Dubnau, D.3
  • 21
    • 84862491510 scopus 로고    scopus 로고
    • Gene transfer agents: phage-like elements of genetic exchange
    • Lang AS, Zhaxybayeva O, Beatty JT. Gene transfer agents: phage-like elements of genetic exchange. Nat Rev Microbiol. 2012;10:472-82.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 472-482
    • Lang, A.S.1    Zhaxybayeva, O.2    Beatty, J.T.3
  • 22
    • 38049173021 scopus 로고    scopus 로고
    • Homologous recombination in DNA repair and DNA damage tolerance
    • Li X, Heyer WD. Homologous recombination in DNA repair and DNA damage tolerance. Cell Res. 2008;18:99-113.
    • (2008) Cell Res , vol.18 , pp. 99-113
    • Li, X.1    Heyer, W.D.2
  • 24
    • 0030807132 scopus 로고    scopus 로고
    • Recombination and population structure in Escherichia coli
    • Milkman R. Recombination and population structure in Escherichia coli. Genetics. 1997;146:745-50.
    • (1997) Genetics , vol.146 , pp. 745-750
    • Milkman, R.1
  • 25
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat E, Daubin V, Ochman H, Moran NA. Evolutionary origins of genomic repertoires in bacteria. PLoS Biol. 2005;3:807-14.
    • (2005) PLoS Biol , vol.3 , pp. 807-814
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 26
    • 33846476262 scopus 로고    scopus 로고
    • Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
    • Dagan T, Martin W. Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc Natl Acad Sci U S A. 2007;104:870-5.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 870-875
    • Dagan, T.1    Martin, W.2
  • 27
    • 84907382530 scopus 로고    scopus 로고
    • Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
    • Puigbo P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV. Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes. BMC Biol. 2014;12:66.
    • (2014) BMC Biol , vol.12 , pp. 66
    • Puigbo, P.1    Lobkovsky, A.E.2    Kristensen, D.M.3    Wolf, Y.I.4    Koonin, E.V.5
  • 28
    • 61349194462 scopus 로고    scopus 로고
    • Estimating the size of the bacterial pan-genome
    • Lapierre P, Gogarten JP. Estimating the size of the bacterial pan-genome. Trends Genet. 2009;25:107-10.
    • (2009) Trends Genet , vol.25 , pp. 107-110
    • Lapierre, P.1    Gogarten, J.P.2
  • 29
    • 84876523152 scopus 로고    scopus 로고
    • Gene frequency distributions reject a neutral model of genome evolution
    • Lobkovsky AE, Wolf YI, Koonin EV. Gene frequency distributions reject a neutral model of genome evolution. Genome Biol Evol. 2013;5:233-42.
    • (2013) Genome Biol Evol , vol.5 , pp. 233-242
    • Lobkovsky, A.E.1    Wolf, Y.I.2    Koonin, E.V.3
  • 31
    • 79851505378 scopus 로고    scopus 로고
    • Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
    • Treangen TJ, Rocha EPC. Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 2011;7:e1001284.
    • (2011) PLoS Genet , vol.7
    • Treangen, T.J.1    Rocha, E.P.C.2
  • 32
    • 0035142427 scopus 로고    scopus 로고
    • Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon
    • Shoemaker NB, Vlamakis H, Hayes K, Salyers AA. Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon. Appl Environ Microbiol. 2001;67:561-8.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 561-568
    • Shoemaker, N.B.1    Vlamakis, H.2    Hayes, K.3    Salyers, A.A.4
  • 33
    • 79960961566 scopus 로고    scopus 로고
    • Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
    • Wiedenbeck J, Cohan FM. Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev. 2011;35:957-76.
    • (2011) FEMS Microbiol Rev , vol.35 , pp. 957-976
    • Wiedenbeck, J.1    Cohan, F.M.2
  • 34
    • 0027738868 scopus 로고
    • Horizontal transfer of ATPase genes - the tree of life becomes a net of life
    • Hilario E, Gogarten JP. Horizontal transfer of ATPase genes - the tree of life becomes a net of life. Biosystems. 1993;31:111-9.
    • (1993) Biosystems , vol.31 , pp. 111-119
    • Hilario, E.1    Gogarten, J.P.2
  • 35
    • 33750810896 scopus 로고    scopus 로고
    • The tree of one percent
    • Dagan T, Martin W. The tree of one percent. Genome Biol. 2006;7:118.
    • (2006) Genome Biol , vol.7 , pp. 118
    • Dagan, T.1    Martin, W.2
  • 36
    • 57149085868 scopus 로고    scopus 로고
    • Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
    • Koonin EV, Wolf YI. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res. 2008;36:6688-719.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6688-6719
    • Koonin, E.V.1    Wolf, Y.I.2
  • 37
    • 85014867742 scopus 로고    scopus 로고
    • Mitochondria, the cell cycle, and the origin of sex via a syncytial eukaryote common ancestor
    • Garg SG, Martin WF. Mitochondria, the cell cycle, and the origin of sex via a syncytial eukaryote common ancestor. Genome Biol Evol. 2016;8:1950-70.
    • (2016) Genome Biol Evol , vol.8 , pp. 1950-1970
    • Garg, S.G.1    Martin, W.F.2
  • 38
    • 84901203656 scopus 로고    scopus 로고
    • The hybrid nature of the Eukaryota and a consilient view of life on Earth
    • McInerney JO, O'Connell MJ, Pisani D. The hybrid nature of the Eukaryota and a consilient view of life on Earth. Nat Rev Microbiol. 2014;12:449-55.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 449-455
    • McInerney, J.O.1    O'Connell, M.J.2    Pisani, D.3
  • 39
    • 84890355580 scopus 로고    scopus 로고
    • An archaeal origin of eukaryotes supports only two primary domains of life
    • Williams TA, Foster PG, Cox CJ, Embley TM. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 2013;504:231-6.
    • (2013) Nature , vol.504 , pp. 231-236
    • Williams, T.A.1    Foster, P.G.2    Cox, C.J.3    Embley, T.M.4
  • 42
    • 77649210966 scopus 로고    scopus 로고
    • Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes
    • Hazkani-Covo E, Zeller RM, Martin W. Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet. 2010;6:e1000834.
    • (2010) PLoS Genet , vol.6
    • Hazkani-Covo, E.1    Zeller, R.M.2    Martin, W.3
  • 43
    • 0026291502 scopus 로고
    • Genetic exchange between kingdoms
    • Sprague GF. Genetic exchange between kingdoms. Curr Opin Genet Dev. 1991;1:530-3.
    • (1991) Curr Opin Genet Dev , vol.1 , pp. 530-533
    • Sprague, G.F.1
  • 44
    • 0037195120 scopus 로고    scopus 로고
    • Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect
    • Kondo N, Nikoh N, Ijichi N, Shimada M, Fukatsu T. Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc Natl Acad Sci U S A. 2002;99:14280-5.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14280-14285
    • Kondo, N.1    Nikoh, N.2    Ijichi, N.3    Shimada, M.4    Fukatsu, T.5
  • 45
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson JO. Lateral gene transfer in eukaryotes. Cell Mol Life Sci. 2005;62:1182-97.
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 46
    • 84869409983 scopus 로고    scopus 로고
    • Widespread impact of horizontal gene transfer on plant colonization of land
    • Yue JP, Hu XY, Sun H, Yang YP, Huang JL. Widespread impact of horizontal gene transfer on plant colonization of land. Nat Commun. 2012;3:1152.
    • (2012) Nat Commun , vol.3 , pp. 1152
    • Yue, J.P.1    Hu, X.Y.2    Sun, H.3    Yang, Y.P.4    Huang, J.L.5
  • 47
    • 84888436630 scopus 로고    scopus 로고
    • Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes
    • Qiu H, Yoon HS, Bhattacharya D. Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Front Plant Sci. 2013;4:366.
    • (2013) Front Plant Sci , vol.4 , pp. 366
    • Qiu, H.1    Yoon, H.S.2    Bhattacharya, D.3
  • 49
    • 84929000302 scopus 로고    scopus 로고
    • The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: an example of a naturally transgenic food crop
    • Kyndt T, Quispe D, Zhai H, Jarret R, Ghislain M, Liu QC, Gheysen G, Kreuze JF. The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: an example of a naturally transgenic food crop. Proc Natl Acad Sci U S A. 2015;112:5844-9.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 5844-5849
    • Kyndt, T.1    Quispe, D.2    Zhai, H.3    Jarret, R.4    Ghislain, M.5    Liu, Q.C.6    Gheysen, G.7    Kreuze, J.F.8
  • 51
    • 84884718654 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotes: the weak-link model
    • Huang JL. Horizontal gene transfer in eukaryotes: the weak-link model. Bioessays. 2013;35:868-75.
    • (2013) Bioessays , vol.35 , pp. 868-875
    • Huang, J.L.1
  • 52
    • 84889681836 scopus 로고    scopus 로고
    • Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution
    • Schönknecht G, Weber APM, Lercher MJ. Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. Bioessays. 2014;36:9-20.
    • (2014) Bioessays , vol.36 , pp. 9-20
    • Schönknecht, G.1    Weber, A.P.M.2    Lercher, M.J.3
  • 53
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet. 2008;9:605-18.
    • (2008) Nat Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 56
    • 84916932905 scopus 로고    scopus 로고
    • Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids
    • Grant JR, Katz LA. Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids. Genome Biol Evol. 2014;6:2350-60.
    • (2014) Genome Biol Evol , vol.6 , pp. 2350-2360
    • Grant, J.R.1    Katz, L.A.2
  • 57
    • 84891859970 scopus 로고    scopus 로고
    • Horizontal gene transfer in the acquisition of novel traits by metazoans
    • Boto L. Horizontal gene transfer in the acquisition of novel traits by metazoans. Proc R Soc B. 2014;281:20132450.
    • (2014) Proc R Soc B , vol.281 , pp. 20132450
    • Boto, L.1
  • 58
    • 0037458117 scopus 로고    scopus 로고
    • Gene transfer: Gene swapping craze reaches eukaryotes
    • Gogarten JP. Gene transfer: Gene swapping craze reaches eukaryotes. Curr Biol. 2003;13:R53-4.
    • (2003) Curr Biol , vol.13 , pp. R53-R54
    • Gogarten, J.P.1
  • 59
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence JG, Ochman H. Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci U S A. 1998;95:9413-7.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 60
  • 61
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • Doolittle WE. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 1998;14:307-11.
    • (1998) Trends Genet , vol.14 , pp. 307-311
    • Doolittle, W.E.1
  • 64
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson JD, Plewniak F, Poch O. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 1999;27:2682-90.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2682-2690
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 65
    • 23844497214 scopus 로고    scopus 로고
    • Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
    • Makarova KS, Wolf YI, Mekhedov SL, Mirkin BG, Koonin EV. Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell. Nucleic Acids Res. 2005;33:4626-38.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4626-4638
    • Makarova, K.S.1    Wolf, Y.I.2    Mekhedov, S.L.3    Mirkin, B.G.4    Koonin, E.V.5
  • 66
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A. 2002;99:12246-51.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 67
    • 78651412161 scopus 로고    scopus 로고
    • Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
    • Zmasek CM, Godzik A. Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires. Genome Biol. 2011;12:R4.
    • (2011) Genome Biol , vol.12 , pp. R4
    • Zmasek, C.M.1    Godzik, A.2
  • 68
    • 84886663525 scopus 로고    scopus 로고
    • Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts
    • Artamonova II, Mushegian AR. Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts. Appl Environ Microbiol. 2013;79:6868-73.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 6868-6873
    • Artamonova, I.I.1    Mushegian, A.R.2
  • 70
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E, Goebel BM. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol. 1994;44:846-9.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 72
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
    • Timmis JN, Ayliffe MA, Huang CY, Martin W. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet. 2004;5:123-35.
    • (2004) Nat Rev Genet , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 73
    • 0027169132 scopus 로고
    • Evidence for a chimeric nature of nuclear genomes: Eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes
    • Martin W, Brinkmann H, Savonna C, Cerff R. Evidence for a chimeric nature of nuclear genomes: Eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes. Proc Natl Acad Sci U S A. 1993;90:8692-6.
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 8692-8696
    • Martin, W.1    Brinkmann, H.2    Savonna, C.3    Cerff, R.4
  • 74
    • 39549122214 scopus 로고    scopus 로고
    • Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
    • Huang J, Gogarten J. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 2007;8:R99.
    • (2007) Genome Biol , vol.8 , pp. R99
    • Huang, J.1    Gogarten, J.2
  • 77
    • 84903793647 scopus 로고    scopus 로고
    • What was the real contribution of endosymbionts to the eukaryotic nucleus? Insights from photosynthetic eukaryotes
    • Moreira D, Deschamps P. What was the real contribution of endosymbionts to the eukaryotic nucleus? Insights from photosynthetic eukaryotes. Cold Spring Harb Perspect Biol. 2014;6:a016014.
    • (2014) Cold Spring Harb Perspect Biol , vol.6
    • Moreira, D.1    Deschamps, P.2
  • 78
    • 84920387512 scopus 로고    scopus 로고
    • Primary endosymbiosis: have cyanobacteria and Chlamydiae ever been roommates?
    • Deschamps P. Primary endosymbiosis: have cyanobacteria and Chlamydiae ever been roommates? Acta Soc Bot Pol. 2014;83:291-302.
    • (2014) Acta Soc Bot Pol , vol.83 , pp. 291-302
    • Deschamps, P.1
  • 80
    • 84924778330 scopus 로고    scopus 로고
    • Plastid establishment did not require a chlamydial partner
    • Domman D, Horn M, Embley TM, Williams TA. Plastid establishment did not require a chlamydial partner. Nat Commun. 2015;6:6421.
    • (2015) Nat Commun , vol.6 , pp. 6421
    • Domman, D.1    Horn, M.2    Embley, T.M.3    Williams, T.A.4
  • 82
    • 84937073270 scopus 로고    scopus 로고
    • Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe
    • Artamonova II, Lappi T, Zudina L, Mushegian AR. Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe. Environ Microbiol. 2015;17:2203-8.
    • (2015) Environ Microbiol , vol.17 , pp. 2203-2208
    • Artamonova, I.I.1    Lappi, T.2    Zudina, L.3    Mushegian, A.R.4
  • 85
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772-80.
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 86
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688-90.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 87
  • 88
    • 34547751897 scopus 로고    scopus 로고
    • Supertrees disentangle the chimerical origin of eukaryotic genomes
    • Pisani D, Cotton JA, McInerney JO. Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol Biol Evol. 2007;24:1752-60.
    • (2007) Mol Biol Evol , vol.24 , pp. 1752-1760
    • Pisani, D.1    Cotton, J.A.2    McInerney, J.O.3
  • 89
    • 0029901637 scopus 로고    scopus 로고
    • Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
    • Felsenstein J. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 1996;266:418-27.
    • (1996) Methods Enzymol , vol.266 , pp. 418-427
    • Felsenstein, J.1
  • 90


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.