The TIGRFAMs database of protein families

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 371-373

  Haft, Daniel H ^a   Selengut, Jeremy D ^a   White, Owen ^a  

^a J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN DERIVATIVE;

AUTOMATION; GENETIC CONSERVATION; HUMAN; INTERNET; NONHUMAN; PRIORITY JOURNAL; PROBABILITY; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; REVIEW; SCIENTIFIC LITERATURE; SCORING SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TIGRFAMS DATABASE;

ANIMALS; DATABASES, PROTEIN; MARKOV CHAINS; MIXED FUNCTION OXYGENASES; PHYLOGENY; PROTEINS; PYRUVATE CARBOXYLASE; SEQUENCE HOMOLOGY, AMINO ACID;

ARACHNIDA; HEXAPODA; NEMATODA;

EID: 0037249633     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg128     Document Type: Review

References (8)

1. Haft,D.H., Loftus,B.J., Richardson,D.L., Yang,F., Eisen,J.A., Paulsen,I.T. and White,O. (2001) TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res., 29, 41-43.
2. Fitch,W.M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
3. Nelson,K.E., Clayton,R.A., Gill,S.R., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Nelson,W.C., Ketchum,K.A. et al. (1999) Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima. Nature, 399, 323-329.
4. Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res., 28, 11-22.
5. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S. and Eppig,J.T. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nature Genet., 25, 25-29.
6. Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
7. Bateman,A. and Haft,D.H. (2002) HMM-based databases in InterPro. Brief. Bioinform., 3, 236-245.
8. Jansen,R., Embden,J.D., Gaastra,W. and Schouls,L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol., 43, 1565-1575.