-
1
-
-
0032404453
-
You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
Doolittle WF: You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 1998, 14(8):307-311.
-
(1998)
Trends Genet
, vol.14
, Issue.8
, pp. 307-311
-
-
Doolittle, W.F.1
-
2
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and Why?
-
Martin W, Herrmann RG: Gene transfer from organelles to the nucleus: how much, what happens, and Why? Plant Physiol 1998, 118(1):9-17.
-
(1998)
Plant Physiol
, vol.118
, Issue.1
, pp. 9-17
-
-
Martin, W.1
Herrmann, R.G.2
-
3
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
Nelson KE, Clayton RA, Gill SK, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Nelson WC, Ketchum KA, McDonald L, Utterback TR, Malek JA, Linher KD, Garrett MM, Stewart AM, Cotton MD, Pratt MS, Phillips CA, Richardson D, Heidelberg J, Sutton GG, Fleischmann RD, Eisen JA, White O, Salzberg SL, Smith HO, Venter JC, Fraser CM: Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 1999, 399(6734):323.
-
(1999)
Nature
, vol.399
, Issue.6734
, pp. 323
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.K.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
McDonald, L.11
Utterback, T.R.12
Malek, J.A.13
Linher, K.D.14
Garrett, M.M.15
Stewart, A.M.16
Cotton, M.D.17
Pratt, M.S.18
Phillips, C.A.19
Richardson, D.20
Heidelberg, J.21
Sutton, G.G.22
Fleischmann, R.D.23
Eisen, J.A.24
White, O.25
Salzberg, S.L.26
Smith, H.O.27
Venter, J.C.28
Fraser, C.M.29
more..
-
4
-
-
0034141421
-
Structural analysis of DNA sequence: Evidence for lateral gene transfer in Thermotoga maritima
-
Woming P, Jensen LJ, Nelson KE, Brunak S, Ussery DW: Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. Nucleic Acids Res 2000, 28(3):706-709.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.3
, pp. 706-709
-
-
Woming, P.1
Jensen, L.J.2
Nelson, K.E.3
Brunak, S.4
Ussery, D.W.5
-
5
-
-
1642458395
-
Horizontal gene transfer from Eukarya to bacteria and domain shuffling: The alpha-amylase model
-
Da Lage JL, Feller G, Janecek S: Horizontal gene transfer from Eukarya to bacteria and domain shuffling:. the alpha-amylase model. Cell Mol Life Sci 2004, 61(1):97-109.
-
(2004)
Cell Mol Life Sci
, vol.61
, Issue.1
, pp. 97-109
-
-
Da Lage, J.L.1
Feller, G.2
Janecek, S.3
-
6
-
-
0033995545
-
Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
-
Garcia-Vallve S, Romeu A, Palau J: Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol Biol Evol 2000, 17(3):352-361.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.3
, pp. 352-361
-
-
Garcia-Vallve, S.1
Romeu, A.2
Palau, J.3
-
7
-
-
0032723601
-
A xylanase produced by the rumen anaerobic protozoan Polyplastron multivesiculatum shows close sequence similarity to family II xylanases from gram-positive bacteria
-
Devillard E, Newbold CJ, Scott KP, Forano E, Wallace RJ, Jouany JP, Flint HJ: A xylanase produced by the rumen anaerobic protozoan Polyplastron multivesiculatum shows close sequence similarity to family II xylanases from gram-positive bacteria. FEMS Microbiol Lett 1999, 181(1):145-152.
-
(1999)
FEMS Microbiol Lett
, vol.181
, Issue.1
, pp. 145-152
-
-
Devillard, E.1
Newbold, C.J.2
Scott, K.P.3
Forano, E.4
Wallace, R.J.5
Jouany, J.P.6
Flint, H.J.7
-
8
-
-
0038576862
-
Horizontally transferred genes in plant-parasitic nematodes: A high-through-put genomic approach
-
Scholl EH, Thorne JL, McCarter JP, Bird DM: Horizontally transferred genes in plant-parasitic nematodes: a high-through-put genomic approach. Genome Biol 2003, 4(6):R39.
-
(2003)
Genome Biol
, vol.4
, Issue.6
-
-
Scholl, E.H.1
Thorne, J.L.2
McCarter, J.P.3
Bird, D.M.4
-
9
-
-
14544294428
-
The genome of the protist parasite Entamoeba histolytica
-
Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillen N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Saye'd NM, Petri WAJ, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N: The genome of the protist parasite Entamoeba histolytica. lytica. Nature 2005, 433(7028):865-868.
-
(2005)
Nature
, vol.433
, Issue.7028
, pp. 865-868
-
-
Loftus, B.1
Anderson, I.2
Davies, R.3
Alsmark, U.C.4
Samuelson, J.5
Amedeo, P.6
Roncaglia, P.7
Berriman, M.8
Hirt, R.P.9
Mann, B.J.10
Nozaki, T.11
Suh, B.12
Pop, M.13
Duchene, M.14
Ackers, J.15
Tannich, E.16
Leippe, M.17
Hofer, M.18
Bruchhaus, I.19
Willhoeft, U.20
Bhattacharya, A.21
Chillingworth, T.22
Churcher, C.23
Hance, Z.24
Harris, B.25
Harris, D.26
Jagels, K.27
Moule, S.28
Mungall, K.29
Ormond, D.30
Squares, R.31
Whitehead, S.32
Quail, M.A.33
Rabbinowitsch, E.34
Norbertczak, H.35
Price, C.36
Wang, Z.37
Guillen, N.38
Gilchrist, C.39
Stroup, S.E.40
Bhattacharya, S.41
Lohia, A.42
Foster, P.G.43
Sicheritz-Ponten, T.44
Weber, C.45
Singh, U.46
Mukherjee, C.47
El-Saye'd, N.M.48
Petri, W.A.J.49
Clark, C.G.50
Embley, T.M.51
Barrell, B.52
Fraser, C.M.53
Hall, N.54
more..
-
10
-
-
0030202866
-
Do ruminal bacteria exchange genetic material?
-
Morrison M: Do ruminal bacteria exchange genetic material? J Dairy Sci 1996, 79(8):1476-1486.
-
(1996)
J Dairy Sci
, vol.79
, Issue.8
, pp. 1476-1486
-
-
Morrison, M.1
-
11
-
-
0032847173
-
Natural genetic transformation in the rumen bacterium Streptococcus bovis JBI
-
Mercer DK, Melville CM, Scott KP, Flint HJ: Natural genetic transformation in the rumen bacterium Streptococcus bovis JBI. FEMS Microbiol Lett 1999, 179(2):485-490.
-
(1999)
FEMS Microbiol Lett
, vol.179
, Issue.2
, pp. 485-490
-
-
Mercer, D.K.1
Melville, C.M.2
Scott, K.P.3
Flint, H.J.4
-
12
-
-
4143067041
-
High coding density on the largest Paramecium tetraurelia somatic chromosome
-
Zagulski M, Nowak JK, Le Mouel A, Nowacki M, Migdalski A, Gromadka R, Noel B, Blanc I, Dessen P, Wincker P, Keller AM, Cohen J, Meyer E, Sperling L: High coding density on the largest Paramecium tetraurelia somatic chromosome. Curr Biol 2004, 14(15):1397-1404.
-
(2004)
Curr Biol
, vol.14
, Issue.15
, pp. 1397-1404
-
-
Zagulski, M.1
Nowak, J.K.2
Le Mouel, A.3
Nowacki, M.4
Migdalski, A.5
Gromadka, R.6
Noel, B.7
Blanc, I.8
Dessen, P.9
Wincker, P.10
Keller, A.M.11
Cohen, J.12
Meyer, E.13
Sperling, L.14
-
14
-
-
20444408468
-
A cellulase produced by the rumen anaerobic protozoan epidinium ecaudatum has an unusual pH optimu
-
Wereszka K, McIntosh FM, Michalowski T, Jouany JP, Nsabimana E, Macheboeuf D, McEwan NK, Newbold CJ: A cellulase produced by the rumen anaerobic protozoan epidinium ecaudatum has an unusual pH optimu. Endocytobiosis and Cell Research 2004, 15:561-569.
-
(2004)
Endocytobiosis and Cell Research
, vol.15
, pp. 561-569
-
-
Wereszka, K.1
McIntosh, F.M.2
Michalowski, T.3
Jouany, J.P.4
Nsabimana, E.5
Macheboeuf, D.6
McEwan, N.K.7
Newbold, C.J.8
-
15
-
-
20444386532
-
An NAD(+)-dependent glutamate dehydrogenase cloned from the ruminal ciliate protozoan, Entodinium caudatum
-
Newbold CJ, McEwan NR, Calza RE, Chareyron EN, Duval SM, Eschenlauer SC, McIntosh FM, Nelson N, Travis AJ, Wallace RJ: An NAD(+)-dependent glutamate dehydrogenase cloned from the ruminal ciliate protozoan, Entodinium caudatum. FEMS Microbiol Lett 2005, 247(2):113-121.
-
(2005)
FEMS Microbiol Lett
, vol.247
, Issue.2
, pp. 113-121
-
-
Newbold, C.J.1
McEwan, N.R.2
Calza, R.E.3
Chareyron, E.N.4
Duval, S.M.5
Eschenlauer, S.C.6
McIntosh, F.M.7
Nelson, N.8
Travis, A.J.9
Wallace, R.J.10
-
16
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF: A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000, 290(5493):972-977.
-
(2000)
Science
, vol.290
, Issue.5493
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
17
-
-
0141682369
-
Isolation and characterization of solventogenic, cellulase-free xylanolytic Clostridia from cow rumen
-
Sankar M, Delgado O, Mattiasson B: Isolation and characterization of solventogenic, cellulase-free xylanolytic Clostridia from cow rumen. Water Sci Technol 2003, 48(4):185-188.
-
(2003)
Water Sci Technol
, vol.48
, Issue.4
, pp. 185-188
-
-
Sankar, M.1
Delgado, O.2
Mattiasson, B.3
-
18
-
-
0035843960
-
Factors that alter rumen microbial ecology
-
Russell JB, Rychlik JL: Factors that alter rumen microbial ecology. Science 2001, 292(5519):1119-1122.
-
(2001)
Science
, vol.292
, Issue.5519
, pp. 1119-1122
-
-
Russell, J.B.1
Rychlik, J.L.2
-
19
-
-
8744222427
-
16S rDNA library-based analysis of ruminal bacterial diversity
-
Edwards JE, McEwan NK Travis AJ, Wallace JR: 16S rDNA library-based analysis of ruminal bacterial diversity. Antonie van Leeuwenhoek 2004, 86(3):263.
-
(2004)
Antonie Van Leeuwenhoek
, vol.86
, Issue.3
, pp. 263
-
-
Edwards, J.E.1
McEwan, N.K.2
Travis, A.J.3
Wallace, J.R.4
-
20
-
-
0242592308
-
Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: Insights into an unexplored niche
-
Nelson KE, Zinder SH, Hance I, Burr P, Odongo D, Wasawo D, Odenyo A, Bishop R: Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche. Environ Microbiol 2003, 5(11):1212-1220.
-
(2003)
Environ Microbiol
, vol.5
, Issue.11
, pp. 1212-1220
-
-
Nelson, K.E.1
Zinder, S.H.2
Hance, I.3
Burr, P.4
Odongo, D.5
Wasawo, D.6
Odenyo, A.7
Bishop, R.8
-
21
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski LB, Golding GB: The closest BLAST hit is often not the nearest neighbor. J Mol Evol 2001, 52(6):540-542.
-
(2001)
J Mol Evol
, vol.52
, Issue.6
, pp. 540-542
-
-
Koski, L.B.1
Golding, G.B.2
-
22
-
-
3142757398
-
Cellulosomes: Plant-cell-wall-degrading enzyme complexes
-
Doi RH, Kosugi A: Cellulosomes: plant-cell-wall-degrading enzyme complexes. Not Rev Microbiol 2004, 2(7)541-551.
-
(2004)
Not Rev Microbiol
, vol.2
, Issue.7
, pp. 541-551
-
-
Doi, R.H.1
Kosugi, A.2
-
23
-
-
0041610460
-
Effect of rumen ciliates on the digestion of different carbohydrates in sheep. I. - Utilization of cell wall carbohydrates (cellulose and hemicellulose) and of starch
-
Jouany JP, Senaud J: [Effect of rumen ciliates on the digestion of different carbohydrates in sheep. I. - Utilization of cell wall carbohydrates (cellulose and hemicellulose) and of starch]. Reprod Nutr Dey 1982, 22(5):735-752.
-
(1982)
Reprod Nutr Dey
, vol.22
, Issue.5
, pp. 735-752
-
-
Jouany, J.P.1
Senaud, J.2
-
24
-
-
0344452093
-
The biochemistry of rumen protozoa: 3 - The carbohydrate metabolism of Entodinium
-
Abou Akkada AR, Howard BH: The biochemistry of rumen protozoa: 3 - The carbohydrate metabolism of Entodinium. Biochem J 1960, 76:445-451.
-
(1960)
Biochem J
, vol.76
, pp. 445-451
-
-
Abou Akkada, A.R.1
Howard, B.H.2
-
25
-
-
0346573280
-
Fiber digesting capacities of five genera of rumen ciliates
-
Ushida K, Jouany JP: Fiber digesting capacities of five genera of rumen ciliates. Proc Soc Nutr Physiol 1994, 3:168.
-
(1994)
Proc Soc Nutr Physiol
, vol.3
, pp. 168
-
-
Ushida, K.1
Jouany, J.P.2
-
26
-
-
14544284067
-
An anaerobic mitochondrion that produces hydrogen
-
Boxma B, de Graaf RM, van der Staay GW, van Alen TA, Ricard G, Gabaldon T, van Hoek AH, Moon-van derStaay SY, Koopman WJ, van Hellemond JJ, Tielens AG, Friedrich T, Veenhuis M, Huynen MA, Hackstein JH: An anaerobic mitochondrion that produces hydrogen. Nature 2005, 434(7029):74-79.
-
(2005)
Nature
, vol.434
, Issue.7029
, pp. 74-79
-
-
Boxma, B.1
de Graaf, R.M.2
van der Staay, G.W.3
van Alen, T.A.4
Ricard, G.5
Gabaldon, T.6
van Hoek, A.H.7
Moon-van der Staay, S.Y.8
Koopman, W.J.9
van Hellemond, J.J.10
Tielens, A.G.11
Friedrich, T.12
Veenhuis, M.13
Huynen, M.A.14
Hackstein, J.H.15
-
27
-
-
0036127969
-
Giardia intestinalis, a eukaryote without hydrogenosomes, produces hydrogen
-
Lloyd D, Ralphs JR, Harris JC: Giardia intestinalis, a eukaryote without hydrogenosomes, produces hydrogen. Microbiology 2002, 148(Pt 3):727-733.
-
(2002)
Microbiology
, vol.148
, Issue.PART 3
, pp. 727-733
-
-
Lloyd, D.1
Ralphs, J.R.2
Harris, J.C.3
-
28
-
-
0037329339
-
Iron-dependent hydrogenases of Entamoeba histolytica and Giardia lamblia: Activity of the recombinant entamoebic enzyme and evidence for lateral gene transfer
-
Nixon JE, Field J, McArthur AG, Sogin ML, Yarlett N, Loftus BJ, Samuelson J: Iron-dependent hydrogenases of Entamoeba histolytica and Giardia lamblia: activity of the recombinant entamoebic enzyme and evidence for lateral gene transfer. Biol Bull 2003, 204(1):1-9.
-
(2003)
Biol Bull
, vol.204
, Issue.1
, pp. 1-9
-
-
Nixon, J.E.1
Field, J.2
McArthur, A.G.3
Sogin, M.L.4
Yarlett, N.5
Loftus, B.J.6
Samuelson, J.7
-
29
-
-
1642390114
-
Malic enzymes of Trichomonas vaginalis: Two enzyme families, two distinct origins
-
Dolezal P, Vanacova S, Tachezy J, Hrdy I: Malic enzymes of Trichomonas vaginalis: two enzyme families, two distinct origins, Gene 2004, 329:81-92.
-
(2004)
Gene
, vol.329
, pp. 81-92
-
-
Dolezal, P.1
Vanacova, S.2
Tachezy, J.3
Hrdy, I.4
-
30
-
-
0021354933
-
Hydrogenosomes in known species of rumen entodiniomorphid protozoa
-
Yarlett: N, Coleman GS, Williams AG, Lloyd D: Hydrogenosomes in known species of rumen entodiniomorphid protozoa. FEMS Microbiol Lett 1984, 21:15-19.
-
(1984)
FEMS Microbiol Lett
, vol.21
, pp. 15-19
-
-
Yarlett, N.1
Coleman, G.S.2
Williams, A.G.3
Lloyd, D.4
-
31
-
-
0041955200
-
Rampant horizontal gene transfer and phospho-donor change in the evolution of the phosphofructokinase
-
Bapteste E, Moreira D, Philippe H: Rampant horizontal gene transfer and phospho-donor change in the evolution of the phosphofructokinase. Gene 2003, 318:185-191.
-
(2003)
Gene
, vol.318
, pp. 185-191
-
-
Bapteste, E.1
Moreira, D.2
Philippe, H.3
-
32
-
-
0025856178
-
Pyrophosphate-dependent phosphofructokinase, an anaerobic glycolytic enzyme?
-
Mertens E: Pyrophosphate-dependent phosphofructokinase, an anaerobic glycolytic enzyme? FEBS Lett 1991, 285(1):1-5.
-
(1991)
FEBS Lett
, vol.285
, Issue.1
, pp. 1-5
-
-
Mertens, E.1
-
33
-
-
0031596609
-
PPi-dependent phosphofructokinase from Thermoproteus teriax, an archaeal descendant of an ancient line in phosphofructokinase evolution
-
Siebers B, Klenk HP, Hensel R: PPi-dependent phosphofructokinase from Thermoproteus teriax, an archaeal descendant of an ancient line in phosphofructokinase evolution. J Bacteriol 1998, 180(8):2137-2143.
-
(1998)
J Bacteriol
, vol.180
, Issue.8
, pp. 2137-2143
-
-
Siebers, B.1
Klenk, H.P.2
Hensel, R.3
-
34
-
-
0002634307
-
Metabolism of nitrogen-containing compounds
-
Edited by. Hobson PNSCS. London, Chapman and Hall
-
Wallace RJ, Onodera R, Cotta MA: Metabolism of nitrogen-containing compounds. In The Rumen Microbial Ecosystem Edited by. Hobson PNSCS. London, Chapman and Hall; 1997:283-328.
-
(1997)
The Rumen Microbial Ecosystem
, pp. 283-328
-
-
Wallace, R.J.1
Onodera, R.2
Cotta, M.A.3
-
35
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: Quantification and classification
-
Koonin EV, Makarova KS, Aravind L: Horizontal gene transfer in prokaryotes: quantification and classification. Annu Rev Microbiol 2001, 55:709-742.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
36
-
-
0028606283
-
Horizontal gene transfer: Evidence and possible consequences
-
Syvanen M: Horizontal gene transfer: evidence and possible consequences. Annu Rev Genet 1994, 28:237-261.
-
(1994)
Annu Rev Genet
, vol.28
, pp. 237-261
-
-
Syvanen, M.1
-
37
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H, Lawrence JG, Groisman EA: Lateral gene transfer and the nature of bacterial innovation. Nature 2000, 405(6784):299-304.
-
(2000)
Nature
, vol.405
, Issue.6784
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
38
-
-
0034810263
-
Minichromosomal DNA replication in the macronucleus of the hypotrichous ciliate Stylonychia lemnae is independent of chromosome-internal sequences
-
Skovorodkin IN, Zassoukhina IB, Hojak S, Ammermann D, Gunzl A: Minichromosomal DNA replication in the macronucleus of the hypotrichous ciliate Stylonychia lemnae is independent of chromosome-internal sequences. Chromosoma 2001, 110(5):352,359.
-
(2001)
Chromosoma
, vol.110
, Issue.5
, pp. 352-359
-
-
Skovorodkin, I.N.1
Zassoukhina, I.B.2
Hojak, S.3
Ammermann, D.4
Gunzl, A.5
-
39
-
-
0034574433
-
Genome gymnastics: Unique modes of DNA evolution and processing in ciliates
-
Prescott DM: Genome gymnastics: unique modes of DNA evolution and processing in ciliates. Nat Rev Genet 2000, 1(3):191-198.
-
(2000)
Nat Rev Genet
, vol.1
, Issue.3
, pp. 191-198
-
-
Prescott, D.M.1
-
40
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence JG, Ochman H: Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 1997, 44(4)383-397.
-
(1997)
J Mol Evol
, vol.44
, Issue.4
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
41
-
-
0035099964
-
Codon bias and base composition are poor indicators of horizontally transferred genes
-
Koski LB, Morton RA, Golding GB: Codon bias and base composition are poor indicators of horizontally transferred genes. Mol Biol Evol 2001, 18(3):404-412.
-
(2001)
Mol Biol Evol
, vol.18
, Issue.3
, pp. 404-412
-
-
Koski, L.B.1
Morton, R.A.2
Golding, G.B.3
-
42
-
-
0030221824
-
Evidence that the Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication
-
Millward-Sadler SJ, Hall J, Black GW, Hazlewood GP, Gilbert HJ: Evidence that the Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication. FEMS Microbiol Lett 1996, 141(2-3):183-188.
-
(1996)
FEMS Microbiol Lett
, vol.141
, Issue.2-3
, pp. 183-188
-
-
Millward-Sadler, S.J.1
Hall, J.2
Black, G.W.3
Hazlewood, G.P.4
Gilbert, H.J.5
-
43
-
-
0032487319
-
Genomic organization of four [beta]-1,4-endoglucanase genes in plant-parasitic cyst nematodes and its evolutionary implications
-
Yan Y, Smant G, Stokkermans J, Qin L, Helder J, Baum T, Schots A, Davis E: Genomic organization of four [beta]-1,4-endoglucanase genes in plant-parasitic cyst nematodes and its evolutionary implications. Gene 1998, 220(1-2):61-70.
-
(1998)
Gene
, vol.220
, Issue.1-2
, pp. 61-70
-
-
Yan, Y.1
Smant, G.2
Stokkermans, J.3
Qin, L.4
Helder, J.5
Baum, T.6
Schots, A.7
Davis, E.8
-
44
-
-
2342492364
-
The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise
-
Dutilh BE, Huynen MA, Bruno WJ, Snel B: The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. J Mol Evol 2004, 58(5):527-539.
-
(2004)
J Mol Evol
, vol.58
, Issue.5
, pp. 527-539
-
-
Dutilh, B.E.1
Huynen, M.A.2
Bruno, W.J.3
Snel, B.4
-
45
-
-
0031716078
-
Phylogenetic position and codon usage of two centrin genes from the rumen ciliate protozoan, Entodinium caudatum
-
Eschenlauer SCP, McEwan NR, Calza RE, Wallace RJ, Onodera R, Newbold CJ: Phylogenetic position and codon usage of two centrin genes from the rumen ciliate protozoan, Entodinium caudatum. FEMS Microbiology Letters 1998, 166(1):147.
-
(1998)
FEMS Microbiology Letters
, vol.166
, Issue.1
, pp. 147
-
-
Eschenlauer, S.C.P.1
McEwan, N.R.2
Calza, R.E.3
Wallace, R.J.4
Onodera, R.5
Newbold, C.J.6
-
46
-
-
33645296760
-
-
VecScreen
-
VecScreen [http://www.ncbi.nlm.nih.gov/VecScreen/VecScreen.html]
-
-
-
-
47
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
Zhang Z, Schwartz S, Wagner L, Miller W: A greedy algorithm for aligning DNA sequences. J Comput Biol 2000, 7(1-2):203-214.
-
(2000)
J Comput Biol
, vol.7
, Issue.1-2
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
-
48
-
-
9144257886
-
The Pfam protein families database
-
Database Issue
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR: The Pfam protein families database. Nucleic Acids Res 2004, 32 Database Issue:D138-41.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
49
-
-
13444262384
-
CDD: A Conserved Domain Database for protein classification
-
(Database issue)
-
Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH: CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res 2005, 33(Database issue):D192-196.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
50
-
-
0345864022
-
SMART 4.0: Towards genomic data integration
-
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P: SMART 4.0: towards genomic data integration. Nucl Acids Res 2004, 32(90001):D142-144.
-
(2004)
Nucl Acids Res
, vol.32
, Issue.DATABASE ISS.
-
-
Letunic, I.1
Copley, R.R.2
Schmidt, S.3
Ciccarelli, F.D.4
Doerks, T.5
Schultz, J.6
Ponting, C.P.7
Bork, P.8
-
51
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science 1997, 278(5338):631-637.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
52
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavuev IV, Tatusova TA, Shankayaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001, 29(1):22-28.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavuev, I.V.3
Tatusova, T.A.4
Shankayaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
54
-
-
0031850628
-
Computation with the KEGG pathway database
-
Ogata H, Goto S, Fujibuchi W, Kanehisa M: Computation with the KEGG pathway database. Biosystems 1998, 47(1-2):119-128.
-
(1998)
Biosystems
, vol.47
, Issue.1-2
, pp. 119-128
-
-
Ogata, H.1
Goto, S.2
Fujibuchi, W.3
Kanehisa, M.4
-
55
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol 1981, 147(1):195-197.
-
(1981)
J Mol Biol
, vol.147
, Issue.1
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
56
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
57
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
58
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17(8):754-755.
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
59
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic Inference under mixed models
-
Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic Inference under mixed models. Bioinformatics 2003, 19(12):1572-1574.
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
|