Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern

Extremophiles

Volumn 10, Issue 6, 2006, Pages 493-504

  Park, Jong S ^a   Cho, Byung C ^a   Simpson, Alastair G B ^b  

^a Seoul National University   (South Korea)

^b DALHOUSIE UNIVERSITY   (Canada)

Author keywords

18S rRNA; Bicosoecids; Extremely halophilic flagellate; Solar saltern; Ultrastructure

Indexed keywords

PROTOZOAL DNA; RNA 18S; SEA WATER; SODIUM CHLORIDE;

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; FLAGELLATE; FLAGELLUM; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; KOREA; METABOLISM; PARASITOLOGY; PHYLOGENY; RIBOTYPING; SCANNING ELECTRON MICROSCOPY; TEMPERATURE; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

ANIMALS; DNA, PROTOZOAN; FLAGELLA; KOREA; MICROSCOPY, ELECTRON, SCANNING; MICROSCOPY, ELECTRON, TRANSMISSION; PHYLOGENY; RIBOTYPING; RNA, RIBOSOMAL, 18S; SEAWATER; SODIUM CHLORIDE; TEMPERATURE; ZOOMASTIGOPHORA;

BICOSOECIDA; CAECITELLUS; HALOCAFETERIA; HALOCAFETERIA SEOSINENSIS; HALOPHILIC ARCHAEON; LORICA; MASTIGOPHORA (FLAGELLATES); PROKARYOTA; STRAMENOPILES; TUBULOCRISTATA;

EID: 33751117187     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-006-0001-x     Document Type: Article

References (42)

1. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1999) Current protocols in molecular biology. Wiley, New York
2. Bloem J, Bär-Gilissen M-JB, Cappenberg TE (1986) Fixation, counting, and manipulation of heterotrophic nanoflagellates. Appl Environ Microbiol 52:1266-1272
3. Brooker BE (1971) Fine structure of Bodo saltans and Bodo candatus (Zoomastigophora, Protozoa) and their affinities with the Tryanosomatidae. Bull Br Mus Nat Hist 22:89-102
4. Caron DA (1986) Effect of temperature on growth, respiration, and nutrient regeneration by an omnivorous microflagellate. Appl Environ Microbiol 52:1340-1347
5. Cavalier-Smith T (2000) Flagellate megaevolution: the basis for eukaryote diversification. In: Leadbeater BSC, Green JC (eds) The flagellates. Systematics Association Special Publications, Taylor & Francies, London, pp 361-390
6. Cavalier-Smith T, Chao EE (2006) Phylogeny and megasystematics of phagotrophic heterokonts (Kingdom Chromista). J Mol Evol 62:388-420
7. Casamayor EO, Massana R, Benlloch S, Øvreås L, et al (2002) Changes in archaeal, prokaryotes and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4:338-348
8. Choi DH, Cho BC (2005) Idiomarina seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea. Int J Syst Evol Microbiol 55:379-383
9. Clavero E, Hernández-Mariné M, Grimalt JO, Garcia-Pichel F (2000) Salinity tolerance of diatoms from thalassic hypersaline environments. J Phycol 36:1021-1034
10. Díez B, Pedrós-Alió C, Marsh TL, Massana R (2001) Application of denaturing gradient gel elctrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Appl Environ Microbiol 67:2942-2951
11. Dujardin MF (1841) Histoire naturelle des zoophytes. Infusoires, comprenant la physiologie et la classification de ces animaux, et la maniére de les étudier a l'aide du microscope. Librairie Encyclopédique de Roret, Paris
12. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
13. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
14. Fenchel T (1986) The ecology of heterotrophic microflagellates. Adv Microb Ecol 9:57-97
15. Fenchel T, Patterson DJ (1988) Cafeteria roenbergensis nov. gen., nov. sp., a heterotrophic microflagellate from marine plankton. Mar Microb Food Web 3:9-19
16. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
17. Guillou L, Chrétiennot-Dinet M-J, Boulben S, Moon-van der Staay SY, Vaulot D (1999) Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): two new heterotrophic flagellates of picoplanktonic size. Protist 150:383-398
18. Huelsenbeck JP (2000) MrBayes: Bayesian inference of phylogeny. Distributed by the author. Department of Biology, University of Rochester, Rochester
19. Huelsenbeck JP, Ronquist F (2001) MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
20. Javor B (1989) Hypersaline environments: microbiology and biogeochemistry. Springer, Berlin Heidelberg New York, pp 5-204
21. Karpov SA (2000) Ultrastructure of the aloricate bicosoecid Pseudobodo tremulans, with revision of the order Bicosoecida. Protistology 1:101-109
22. Karpov SA, Sogin ML, Silberman JD (2001) Rootlet homology, taxonomy, and phylogeny of bicosoecids based on 18S rRNA gene sequences. Protistology 2:34-47
23. Kusher DJ (1978) Microbial life in extreme environments. Academic, New York, p 323
24. Lee WJ, Patterson DJ (2002) Abundance and biomass of heterotrophic flagellates, and factors controlling their abundance and distribution in sediments of Botany Bay. Microb Ecol 43:467-481
25. Medlin L, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions. Gene 71:491-499
26. Namyslowski B (1913) Über unbekannte halophile Mikroorganismen aus dem Innern des Salzbergwerkes Wieliczka. Bull Int Acad Sci Krakow B 3/4:88-104
27. O'Kelly CJ, Nerad TA (1998) Kinetid architecture and bicosoecid affinities of the marine heterotrophic nanoflagellate Caecitellus parvulus (Griessmann 1913) Patterson et al. (1993). Eur J Protistol 34:369-375
28. Oren A (1995) The role of glycerol in the nutrition of halophilic archaeal communities: a study of respiratory electron transport. FEMS Microbiol Ecol 16:281-290
29. Oren A (2002) Molecular ecology of extremely halophilic archaea and bacteria. FEMS Microbiol Ecol 39:1-7
30. Park JS, Kim HJ, Choi DH, Cho BC (2003) Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern. Aquat Microb Ecol 33:173-179
31. Patterson DJ, Simpson AGB (1996) Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. Eur J Protistol 32:423-448
32. Patterson DJ, Vørs N, Simpson AGB, O'Kelly CJ (2002) Residual free-living and predatory heterotrophic flagellates. In: Lee JJ, Leedale GF, Bradbury P (eds) An illustrated guide to the protozoa, 2nd edn. Society of Protozoologists, Lawrence, Kansas, pp 1302-1328
33. Post FJ, Borowitzka LJ, Borowitzka MA, Mackay B, Moulton T (1983) The protozoa of a Western Australian hypersaline lagoon. Hydrobiology 105:95-113
34. Roesler CS, Culbertson CW, Etheridge SM, Goericke R, Kiene RP, Miller LO, Oremland RS (2002) Distribution, production, and ecophysiology of Picocystis strain ML from Mono Lake, California. Limnol Oceanogr 47:420-452
35. Ruinen J (1938) Notizen über Salzflagellaten. II. Über die Verbereitung der Salzflagellaten. Arch Protistenkd 90:210-258
36. Swofford DL (1998) PAUP*4.0. Sinauer Associates, Sunderland
37. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
38. Van de Peer Y, De Rijk P, Wuyts J, Winkelmans T, De Wachter R (2000) The European small subunit ribosomal RNA database. Nucleic Acids Res. 28:175-176
39. Verhagen FJM, Zölffel M, Brugerolle G, Patterson DJ (1994) Adriamonas peritocrescens gen. nov., sp. nov., a new free-living soil flagellate (Protista, Pseudodendromonadidae incertae sedis). Eur J Protistol 30:295-308
40. Von der Heyden S, Cavalier-Smith T (2005) Culturing and environmental DNA sequencing uncover hidden kinetoplastid biodiversity and a major marine clade within ancestrally freshwater Neobodo designis. Int J Syst Evol Microbiol 55:2605-2621
41. Von der Heyden S, Chao EE, Vickerman K, Cavalier-Smith T (2004) Ribosomal RNA phylogeny of bodonid and diplonemid flagellates and the evolution of Euglenozoa. J Eukaryot Microbiol 51:402-416
42. Volcani BE (1944) The microorganisms of the Dead Sea. In: Papers collected to commemorate the 70th anniversary of Dr. Chaim Weizmann. Daniel Sieff Research Institute, Rehovoth, pp 71-85