-
1
-
-
84913594397
-
Genome editing. The new frontier of genome engineering with CRISPR-Cas9
-
Doudna JA, Charpentier E (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 346(6213):1258096.
-
(2014)
Science
, vol.346
, Issue.6213
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
-
2
-
-
77955867185
-
Genome editing with engineered zinc finger nucleases
-
Urnov FD, Rebar EJ, Holmes MC, Zhang HS, Gregory PD (2010) Genome editing with engineered zinc finger nucleases. Nat Rev Genet 11(9):636-646.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.9
, pp. 636-646
-
-
Urnov, F.D.1
Rebar, E.J.2
Holmes, M.C.3
Zhang, H.S.4
Gregory, P.D.5
-
3
-
-
80053343092
-
TAL effectors: Customizable proteins for DNA targeting
-
Bogdanove AJ, Voytas DF (2011) TAL effectors: Customizable proteins for DNA targeting. Science 333(6051):1843-1846.
-
(2011)
Science
, vol.333
, Issue.6051
, pp. 1843-1846
-
-
Bogdanove, A.J.1
Voytas, D.F.2
-
4
-
-
84895783187
-
MegaTALs: A rare-cleaving nuclease architecture for therapeutic genome engineering
-
Boissel S, et al. (2014) megaTALs: A rare-cleaving nuclease architecture for therapeutic genome engineering. Nucleic Acids Res 42(4):2591-2601.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.4
, pp. 2591-2601
-
-
Boissel, S.1
-
5
-
-
84942921684
-
Efficient modification of CCR5 in primary human hematopoietic cells using a megaTAL nuclease and AAV donor template
-
Sather BD, et al. (2015) Efficient modification of CCR5 in primary human hematopoietic cells using a megaTAL nuclease and AAV donor template. Sci Transl Med 7(307):307ra156.
-
(2015)
Sci Transl Med
, vol.7
, Issue.307
, pp. 307ra156
-
-
Sather, B.D.1
-
6
-
-
84896766709
-
Homing endonucleases from mobile group i introns: Discovery to genome engineering
-
Stoddard BL (2014) Homing endonucleases from mobile group I introns: Discovery to genome engineering. Mob DNA 5(1):7.
-
(2014)
Mob DNA
, vol.5
, Issue.1
, pp. 7
-
-
Stoddard, B.L.1
-
7
-
-
84929666410
-
Expanding the biologist's toolkit with CRISPR-Cas9
-
Sternberg SH, Doudna JA (2015) Expanding the biologist's toolkit with CRISPR-Cas9. Mol Cell 58(4):568-574.
-
(2015)
Mol Cell
, vol.58
, Issue.4
, pp. 568-574
-
-
Sternberg, S.H.1
Doudna, J.A.2
-
8
-
-
84902185906
-
Genome engineering with targetable nucleases
-
Carroll D (2014) Genome engineering with targetable nucleases. Annu Rev Biochem 83:409-439.
-
(2014)
Annu Rev Biochem
, vol.83
, pp. 409-439
-
-
Carroll, D.1
-
9
-
-
84902210542
-
Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification
-
Guilinger JP, Thompson DB, Liu DR (2014) Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Nat Biotechnol 32(6):577-582.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.6
, pp. 577-582
-
-
Guilinger, J.P.1
Thompson, D.B.2
Liu, D.R.3
-
10
-
-
84941975665
-
Efficient fdCas9 synthetic endonuclease with improved specificity for precise genome engineering
-
Aouida M, et al. (2015) Efficient fdCas9 synthetic endonuclease with improved specificity for precise genome engineering. PLoS One 10(7):e0133373.
-
(2015)
PLoS One
, vol.10
, Issue.7
, pp. e0133373
-
-
Aouida, M.1
-
11
-
-
84902204289
-
Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
-
Tsai SQ, et al. (2014) Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat Biotechnol 32(6):569-576.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.6
, pp. 569-576
-
-
Tsai, S.Q.1
-
12
-
-
0036021389
-
Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases
-
Bibikova M, Golic M, Golic KG, Carroll D (2002) Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. Genetics 161(3):1169-1175.
-
(2002)
Genetics
, vol.161
, Issue.3
, pp. 1169-1175
-
-
Bibikova, M.1
Golic, M.2
Golic, K.G.3
Carroll, D.4
-
13
-
-
79956215808
-
Induction and repair of DNA double strand breaks: The increasing spectrum of non-homologous end joining pathways
-
Mladenov E, Iliakis G (2011) Induction and repair of DNA double strand breaks: The increasing spectrum of non-homologous end joining pathways. Mutat Res 711(1-2):61-72.
-
(2011)
Mutat Res
, vol.711
, Issue.1-2
, pp. 61-72
-
-
Mladenov, E.1
Iliakis, G.2
-
14
-
-
77953229115
-
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber MR (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79:181-211.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
15
-
-
54849404458
-
MMEJ repair of double-strand breaks (director's cut): Deleted sequences and alternative endings
-
McVey M, Lee SE (2008) MMEJ repair of double-strand breaks (director's cut): Deleted sequences and alternative endings. Trends Genet 24(11):529-538.
-
(2008)
Trends Genet
, vol.24
, Issue.11
, pp. 529-538
-
-
McVey, M.1
Lee, S.E.2
-
16
-
-
38049155945
-
Regulation of DNA double-strand break repair pathway choice
-
Shrivastav M, De Haro LP, Nickoloff JA (2008) Regulation of DNA double-strand break repair pathway choice. Cell Res 18(1):134-147.
-
(2008)
Cell Res
, vol.18
, Issue.1
, pp. 134-147
-
-
Shrivastav, M.1
De Haro, L.P.2
Nickoloff, J.A.3
-
17
-
-
84888626405
-
Modernizing the nonhomologous end-joining repertoire: Alternative and classical NHEJ share the stage
-
Deriano L, Roth DB (2013) Modernizing the nonhomologous end-joining repertoire: Alternative and classical NHEJ share the stage. Annu Rev Genet 47:433-455.
-
(2013)
Annu Rev Genet
, vol.47
, pp. 433-455
-
-
Deriano, L.1
Roth, D.B.2
-
18
-
-
84983354429
-
Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes
-
Richardson CD, Ray GJ, Bray NL, Corn JE (2016) Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes. Nat Commun 7:12463.
-
(2016)
Nat Commun
, vol.7
, pp. 12463
-
-
Richardson, C.D.1
Ray, G.J.2
Bray, N.L.3
Corn, J.E.4
-
19
-
-
84885791114
-
Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila
-
Beumer KJ, et al. (2013) Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila. G3 (Bethesda) 3(10):1717-1725.
-
(2013)
G3 (Bethesda)
, vol.3
, Issue.10
, pp. 1717-1725
-
-
Beumer, K.J.1
-
20
-
-
84875298381
-
A large-scale in vivo analysis reveals that TALENs are significantly more mutagenic than ZFNs generated using context-dependent assembly
-
Chen S, et al. (2013) A large-scale in vivo analysis reveals that TALENs are significantly more mutagenic than ZFNs generated using context-dependent assembly. Nucleic Acids Res 41(4):2769-2778.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.4
, pp. 2769-2778
-
-
Chen, S.1
-
21
-
-
84982854588
-
Probing the impact of chromatin conformation on genome editing tools
-
Chen X, et al. (2016) Probing the impact of chromatin conformation on genome editing tools. Nucleic Acids Res 44(13):6482-6492.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.13
, pp. 6482-6492
-
-
Chen, X.1
-
22
-
-
84862745388
-
Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases
-
Daboussi F, et al. (2012) Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases. Nucleic Acids Res 40(13):6367-6379.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.13
, pp. 6367-6379
-
-
Daboussi, F.1
-
23
-
-
84983792922
-
Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery
-
Lin S, Staahl BT, Alla RK, Doudna JA (2014) Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery. eLife 3:e04766.
-
(2014)
ELife
, vol.3
, pp. e04766
-
-
Lin, S.1
Staahl, B.T.2
Alla, R.K.3
Doudna, J.A.4
-
24
-
-
84867061435
-
Coupling endonucleases with DNA end-processing enzymes to drive gene disruption
-
Certo MT, et al. (2012) Coupling endonucleases with DNA end-processing enzymes to drive gene disruption. Nat Methods 9(10):973-975.
-
(2012)
Nat Methods
, vol.9
, Issue.10
, pp. 973-975
-
-
Certo, M.T.1
-
25
-
-
84872862315
-
High frequency targeted mutagenesis using engineered endonucleases and DNA-end processing enzymes
-
Delacôte F, et al. (2013) High frequency targeted mutagenesis using engineered endonucleases and DNA-end processing enzymes. PLoS One 8(1):e53217.
-
(2013)
PLoS One
, vol.8
, Issue.1
, pp. e53217
-
-
Delacôte, F.1
-
26
-
-
84884288934
-
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
-
Ran FA, et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154(6):1380-1389.
-
(2013)
Cell
, vol.154
, Issue.6
, pp. 1380-1389
-
-
Ran, F.A.1
-
27
-
-
84861428291
-
Monomeric site-specific nucleases for genome editing
-
Kleinstiver BP, et al. (2012) Monomeric site-specific nucleases for genome editing. Proc Natl Acad Sci USA 109(21):8061-8066.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.21
, pp. 8061-8066
-
-
Kleinstiver, B.P.1
-
28
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337(6096):816-821.
-
(2012)
Science
, vol.337
, Issue.6096
, pp. 816-821
-
-
Jinek, M.1
-
29
-
-
84902595538
-
The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs
-
Kleinstiver BP, et al. (2014) The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs. G3 (Bethesda) 4(6):1155-1165.
-
(2014)
G3 (Bethesda)
, vol.4
, Issue.6
, pp. 1155-1165
-
-
Kleinstiver, B.P.1
-
30
-
-
84905586329
-
MegaTevs: Single-chain dual nucleases for efficient gene disruption
-
Wolfs JM, et al. (2014) MegaTevs: Single-chain dual nucleases for efficient gene disruption. Nucleic Acids Res 42(13):8816-8829.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.13
, pp. 8816-8829
-
-
Wolfs, J.M.1
-
31
-
-
1842579613
-
Mutation detection using Surveyor nuclease
-
Qiu P, et al. (2004) Mutation detection using Surveyor nuclease. Biotechniques 36(4): 702-707.
-
(2004)
Biotechniques
, vol.36
, Issue.4
, pp. 702-707
-
-
Qiu, P.1
-
32
-
-
77957754251
-
A rapid and general assay for monitoring endogenous gene modification
-
Guschin DY, et al. (2010) A rapid and general assay for monitoring endogenous gene modification. Methods Mol Biol 649:247-256.
-
(2010)
Methods Mol Biol
, vol.649
, pp. 247-256
-
-
Guschin, D.Y.1
-
33
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
Ran FA, et al. (2013) Genome engineering using the CRISPR-Cas9 system. Nat Protoc 8(11):2281-2308.
-
(2013)
Nat Protoc
, vol.8
, Issue.11
, pp. 2281-2308
-
-
Ran, F.A.1
-
34
-
-
70349902619
-
Genes within genes: Multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within an rnl group i intron of Ophiostoma and related taxa
-
Sethuraman J, Majer A, Friedrich NC, Edgell DR, Hausner G (2009) Genes within genes: Multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within an rnl group I intron of Ophiostoma and related taxa. Mol Biol Evol 26(10):2299-2315.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.10
, pp. 2299-2315
-
-
Sethuraman, J.1
Majer, A.2
Friedrich, N.C.3
Edgell, D.R.4
Hausner, G.5
-
35
-
-
80051964399
-
Tapping natural reservoirs of homing endonucleases for targeted gene modification
-
Takeuchi R, et al. (2011) Tapping natural reservoirs of homing endonucleases for targeted gene modification. Proc Natl Acad Sci USA 108(32):13077-13082.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.32
, pp. 13077-13082
-
-
Takeuchi, R.1
-
36
-
-
0037172989
-
Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI
-
Dean AB, et al. (2002) Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI. Proc Natl Acad Sci USA 99(13):8554-8561.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.13
, pp. 8554-8561
-
-
Dean, A.B.1
-
37
-
-
44349085906
-
Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI
-
Liu Q, et al. (2008) Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI. J Mol Biol 379(5):1094-1106.
-
(2008)
J Mol Biol
, vol.379
, Issue.5
, pp. 1094-1106
-
-
Liu, Q.1
-
38
-
-
84901834420
-
Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
-
Kim S, Kim D, Cho SW, Kim J, Kim JS (2014) Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res 24(6):1012-1019.
-
(2014)
Genome Res
, vol.24
, Issue.6
, pp. 1012-1019
-
-
Kim, S.1
Kim, D.2
Cho, S.W.3
Kim, J.4
Kim, J.S.5
-
39
-
-
84988421084
-
Perpetuating the homing endonuclease life cycle: Identification of mutations that modulate and change I-TevI cleavage preference
-
Roy AC, Wilson GG, Edgell DR (2016) Perpetuating the homing endonuclease life cycle: Identification of mutations that modulate and change I-TevI cleavage preference. Nucleic Acids Res 44(15):7350-7359.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.15
, pp. 7350-7359
-
-
Roy, A.C.1
Wilson, G.G.2
Edgell, D.R.3
-
40
-
-
84949791988
-
Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition
-
Kleinstiver BP, et al. (2015) Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition. Nat Biotechnol 33(12):1293-1298.
-
(2015)
Nat Biotechnol
, vol.33
, Issue.12
, pp. 1293-1298
-
-
Kleinstiver, B.P.1
-
41
-
-
84937908208
-
Engineered CRISPR-Cas9 nucleases with altered PAM specificities
-
Kleinstiver BP, et al. (2015) Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature 523(7561):481-485.
-
(2015)
Nature
, vol.523
, Issue.7561
, pp. 481-485
-
-
Kleinstiver, B.P.1
-
42
-
-
84887104139
-
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
-
Esvelt KM, et al. (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat Methods 10(11):1116-1121.
-
(2013)
Nat Methods
, vol.10
, Issue.11
, pp. 1116-1121
-
-
Esvelt, K.M.1
-
43
-
-
84949087122
-
DNA-binding-domain fusions enhance the targeting range and precision of Cas9
-
Bolukbasi MF, et al. (2015) DNA-binding-domain fusions enhance the targeting range and precision of Cas9. Nat Methods 12(12):1150-1156.
-
(2015)
Nat Methods
, vol.12
, Issue.12
, pp. 1150-1156
-
-
Bolukbasi, M.F.1
-
44
-
-
0029831039
-
Exon coconversion biases accompanying intron homing: Battle of the nucleases
-
Mueller JE, Smith D, Belfort M (1996) Exon coconversion biases accompanying intron homing: Battle of the nucleases. Genes Dev 10(17):2158-2166.
-
(1996)
Genes Dev
, vol.10
, Issue.17
, pp. 2158-2166
-
-
Mueller, J.E.1
Smith, D.2
Belfort, M.3
-
45
-
-
84960911917
-
Enhancing homologydirected genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA
-
Richardson CD, Ray GJ, DeWitt MA, Curie GL, Corn JE (2016) Enhancing homologydirected genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat Biotechnol 34(3):339-344.
-
(2016)
Nat Biotechnol
, vol.34
, Issue.3
, pp. 339-344
-
-
Richardson, C.D.1
Ray, G.J.2
DeWitt, M.A.3
Curie, G.L.4
Corn, J.E.5
-
46
-
-
84950283765
-
A generic strategy for CRISPR-Cas9-mediated gene tagging
-
Lackner DH, et al. (2015) A generic strategy for CRISPR-Cas9-mediated gene tagging. Nat Commun 6:10237.
-
(2015)
Nat Commun
, vol.6
, pp. 10237
-
-
Lackner, D.H.1
-
47
-
-
84988985113
-
High-resolution interrogation of functional elements in the noncoding genome
-
Sanjana NE, et al. (2016) High-resolution interrogation of functional elements in the noncoding genome. Science 353(6307):1545-1549.
-
(2016)
Science
, vol.353
, Issue.6307
, pp. 1545-1549
-
-
Sanjana, N.E.1
-
48
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19):2460-2461.
-
(2010)
Bioinformatics
, vol.26
, Issue.19
, pp. 2460-2461
-
-
Edgar, R.C.1
|