메뉴 건너뛰기




Volumn 40, Issue 13, 2012, Pages 6367-6379

Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases

(31)  Daboussi, Fayza a   Zaslavskiy, Mikhail a   Poirot, Laurent a   Loperfido, Mariana b,c   Gouble, Agnès a   Guyot, Valerie a   Leduc, Sophie a   Galetto, Roman a   Grizot, Sylvestre a   Oficjalska, Danusia a   Perez, Christophe a   Delacôte, Fabien a   Dupuy, Aurélie a,e   Chion Sotinel, Isabelle a   Le Clerre, Diane a   Lebuhotel, Céline a   Danos, Olivier d   Lemaire, Frédéric a   Oussedik, Kahina a   Cédrone, Frédéric a   more..

d INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE;

EID: 84862745388     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks268     Document Type: Article
Times cited : (62)

References (38)
  • 1
    • 79951694132 scopus 로고    scopus 로고
    • Meganucleases and other tools for targeted genome engineering: Perspectives and challenges for gene therapy
    • Silva, G., Poirot, L., Galetto, R., Smith, J., Montoya, G., Duchateau, P. and Paques, F. (2011) Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy. Curr. Gene Ther., 11, 11-27.
    • (2011) Curr. Gene Ther , vol.11 , pp. 11-27
    • Silva, G.1    Poirot, L.2    Galetto, R.3    Smith, J.4    Montoya, G.5    Duchateau, P.6    Paques, F.7
  • 2
    • 34447314165 scopus 로고    scopus 로고
    • Precision genome surgery
    • Pingoud, A. and Silva, G.H. (2007) Precision genome surgery. Nat. Biotechnol., 25, 743-744.
    • (2007) Nat. Biotechnol , vol.25 , pp. 743-744
    • Pingoud, A.1    Silva, G.H.2
  • 3
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
    • Pattanayak, V., Ramirez, C.L., Joung, J.K. and Liu, D.R. (2011) Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat. Methods, 8, 765-770.
    • (2011) Nat. Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 6
    • 33847246298 scopus 로고    scopus 로고
    • Meganucleases and DNA double-strand break-induced recombination: Perspectives for gene therapy
    • Pâ ques, F. and Duchateau, P. (2007) Meganucleases and DNA double-strand break-induced recombination: perspectives for gene therapy. Curr. Gene Ther., 7, 49-66.
    • (2007) Curr. Gene Ther , vol.7 , pp. 49-66
    • Pâques, F.1    Duchateau, P.2
  • 7
    • 78651240053 scopus 로고    scopus 로고
    • Homing endonucleases: From microbial genetic invaders to reagents for targeted DNA modification
    • Stoddard, B.L. (2011) Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification. Structure, 19, 7-15.
    • (2011) Structure , vol.19 , pp. 7-15
    • Stoddard, B.L.1
  • 8
    • 78650919363 scopus 로고    scopus 로고
    • Nanoparticles deliver triplex-forming pnas for site-specific genomic recombination in cd34+human hematopoietic progenitors
    • McNeer, N.A., Chin, J.Y., Schleifman, E.B., Fields, R.J., Glazer, P.M. and Saltzman, W.M. (2010) Nanoparticles deliver triplex-forming PNAs for site-specific genomic recombination in CD34+human hematopoietic progenitors. Mol. Ther., 19, 172-180.
    • (2010) Mol. Ther , vol.19 , pp. 172-180
    • McNeer, N.A.1    Chin, J.Y.2    Schleifman, E.B.3    Fields, R.J.4    Glazer, P.M.5    Saltzman, W.M.6
  • 12
    • 80053039555 scopus 로고    scopus 로고
    • A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity
    • Mussolino, C., Morbitzer, R., Lütge, F., Dannemann, N., Lahaye, T. and Cathomen, T. (2011) A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucleic Acids Res., 39, 9283-9293.
    • (2011) Nucleic Acids Res , vol.39 , pp. 9283-9293
    • Mussolino, C.1    Morbitzer, R.2    Lütge, F.3    Dannemann, N.4    Lahaye, T.5    Cathomen, T.6
  • 13
    • 0028061666 scopus 로고
    • Introduction of double-strand breaks into the genome of mouse cells by expression of a rare-cutting endonuclease
    • Rouet, P., Smih, F. and Jasin, M. (1994) Introduction of double-strand breaks into the genome of mouse cells by expression of a rare-cutting endonuclease. Mol. Cell Biol., 14, 8096-8106.
    • (1994) Mol. Cell Biol , vol.14 , pp. 8096-8106
    • Rouet, P.1    Smih, F.2    Jasin, M.3
  • 14
    • 0028919608 scopus 로고
    • Induction of homologous recombination in mammalian chromosomes by using the I-scei system of saccharoMcyes cerevisiae
    • Choulika, A., Perrin, A., Dujon, B. and Nicolas, J.F. (1995) Induction of homologous recombination in mammalian chromosomes by using the I-SceI system of SaccharoMcyes cerevisiae. Mol. Cell. Biol., 15, 1968-1973.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 1968-1973
    • Choulika, A.1    Perrin, A.2    Dujon, B.3    Nicolas, J.F.4
  • 22
    • 0032574750 scopus 로고    scopus 로고
    • Homology-directed repair is a major double-strand break repair pathway in mammalian cells
    • Liang, F., Han, M., Romanienko, P.J. and Jasin, M. (1998) Homology-directed repair is a major double-strand break repair pathway in mammalian cells. Proc. Natl Acad. Sci. USA, 95, 5172-5177.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 5172-5177
    • Liang, F.1    Han, M.2    Romanienko, P.J.3    Jasin, M.4
  • 24
    • 0025790171 scopus 로고
    • In vivo footprinting of rat TAT gene: Dynamic interplay between the glucocorticoid receptor and a liver-specific factor
    • Rigaud, G., Roux, J., Pictet, R. and Grange, T. (1991) In vivo footprinting of rat TAT gene: dynamic interplay between the glucocorticoid receptor and a liver-specific factor. Cell, 67, 977-986.
    • (1991) Cell , vol.67 , pp. 977-986
    • Rigaud, G.1    Roux, J.2    Pictet, R.3    Grange, T.4
  • 25
    • 70949095071 scopus 로고    scopus 로고
    • In vivo DNase I, MNase, and restriction enzyme footprinting via ligation-mediated polymerase chain reaction (LM-PCR)
    • doi:10.1101/pdb.prot5277
    • Carey, M.F., Peterson, C.L. and Smale, S.T. (2009) In vivo DNase I, MNase, and restriction enzyme footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb. Protoc., 2009, doi:10.1101/pdb. prot5277.
    • (2009) Cold Spring Harb. Protoc , vol.2009
    • Carey, M.F.1    Peterson, C.L.2    Smale, S.T.3
  • 26
    • 62849083222 scopus 로고    scopus 로고
    • The emerging role of nuclear architecture in DNA repair and genome maintenance
    • Misteli, T. and Soutoglou, E. (2009) The emerging role of nuclear architecture in DNA repair and genome maintenance. Nat. Rev. Mol. Cell. Biol., 10, 243-254.
    • (2009) Nat. Rev. Mol. Cell. Biol , vol.10 , pp. 243-254
    • Misteli, T.1    Soutoglou, E.2
  • 28
    • 34447109864 scopus 로고    scopus 로고
    • Engineered I-CreI derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells
    • Arnould, S., Perez, C., Cabaniols, J.P., Smith, J., Gouble, A., Grizot, S., Epinat, J.C., Duclert, A., Duchateau, P. and Paques, F. (2007) Engineered I-CreI derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells. J. Mol. Biol., 371, 49-65.
    • (2007) J. Mol. Biol , vol.371 , pp. 49-65
    • Arnould, S.1    Perez, C.2    Cabaniols, J.P.3    Smith, J.4    Gouble, A.5    Grizot, S.6    Epinat, J.C.7    Duclert, A.8    Duchateau, P.9    Paques, F.10
  • 29
    • 80051730980 scopus 로고    scopus 로고
    • Context dependence between subdomains in the DNA binding interface of the I-CreI homing endonuclease
    • Grizot, S., Duclert, A., Thomas, S., Duchateau, P. and Paques, F. (2011) Context dependence between subdomains in the DNA binding interface of the I-CreI homing endonuclease. Nucleic Acids Res., 39, 6124-6136.
    • (2011) Nucleic Acids Res , vol.39 , pp. 6124-6136
    • Grizot, S.1    Duclert, A.2    Thomas, S.3    Duchateau, P.4    Paques, F.5
  • 32
    • 70349404436 scopus 로고    scopus 로고
    • Targeted approaches for gene therapy and the emergence of engineered meganucleases
    • Galetto, R., Duchateau, P. and Paques, F. (2009) Targeted approaches for gene therapy and the emergence of engineered meganucleases. Expert Opin. Biol. Ther., 9, 1289-1303.
    • (2009) Expert Opin. Biol. Ther , vol.9 , pp. 1289-1303
    • Galetto, R.1    Duchateau, P.2    Paques, F.3
  • 34
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus, M.H. and Baltimore, D. (2003) Chimeric nucleases stimulate gene targeting in human cells. Science, 300, 763.
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 35
    • 38849103093 scopus 로고    scopus 로고
    • DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases
    • Cornu, T.I., Thibodeau-Beganny, S., Guhl, E., Alwin, S., Eichtinger, M., Joung, J.K. and Cathomen, T. (2008) DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. Mol. Ther., 16, 352-358.
    • (2008) Mol. Ther , vol.16 , pp. 352-358
    • Cornu, T.I.1    Thibodeau-Beganny, S.2    Guhl, E.3    Alwin, S.4    Eichtinger, M.5    Joung, J.K.6    Cathomen, T.7
  • 36
    • 0035888026 scopus 로고    scopus 로고
    • Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene
    • Rao, S., Procko, E. and Shannon, M.F.J. (2001) Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene. Immunol., 167, 4494-4503.
    • (2001) Immunol , vol.167 , pp. 4494-4503
    • Rao, S.1    Procko, E.2    Shannon, M.F.J.3
  • 37
    • 38349051099 scopus 로고    scopus 로고
    • Quantitative differences in chromatin accessibility across regulatory regions can be directly compared in distinct cell-types
    • Cruickshank, M., Fenwick, E., Abraham, L.J. and Ulgiati, D. (2008) Quantitative differences in chromatin accessibility across regulatory regions can be directly compared in distinct cell-types. Biochem. Biophys. Res. Commun., 367, 349-355.
    • (2008) Biochem. Biophys. Res. Commun , vol.367 , pp. 349-355
    • Cruickshank, M.1    Fenwick, E.2    Abraham, L.J.3    Ulgiati, D.4
  • 38
    • 38349145553 scopus 로고    scopus 로고
    • Importance of the cell cycle phase for the choice of the appropriate DSB repair pathway, for genome stability maintenance: The trans-s double-strand break repair model
    • Delacote, F. and Lopez, B.S. (2008) Importance of the cell cycle phase for the choice of the appropriate DSB repair pathway, for genome stability maintenance: the trans-S double-strand break repair model. Cell Cycle, 7, 33-38.
    • (2008) Cell Cycle , vol.7 , pp. 33-38
    • Delacote, F.1    Lopez, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.