Search and clustering orders of magnitude faster than BLAST

Bioinformatics

Volumn 26, Issue 19, 2010, Pages 2460-2461

  Edgar, Robert C ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALGORITHM; ARTICLE; BIOLOGY; CHEMISTRY; CLUSTER ANALYSIS; METHODOLOGY; PROTEIN DATABASE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

ALGORITHMS; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 77957244650     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq461     Document Type: Article

References (8)

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2. Butte, A.J. (2001) Challenges in bioinformatics: infrastructure, models and analytics. Trends Biotechnol., 19, 159-160.
3. Costello, E.K. et al. (2009) Bacterial community variation in human body habitats across space and time. Science, 326, 1694-1697.
4. Edgar, R.C. (2004a) Local homology recognition and distance measures in linear time using compressed amino acid alphabets. Nucleic Acids Res., 32, 380-385.
5. Edgar, R.C. (2004b) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
6. Finn, R.D. et al. (2008) The Pfam protein families database. Nucleic Acids Res., 36, D281-D288.
7. Gardner, P.P. et al. (2009) Rfam: updates to the RNA families database. Nucleic Acids Res., 37, D136-D140.
8. Li, W. and Godzik, A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.