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Volumn 44, Issue 15, 2016, Pages 7350-7359

Perpetuating the homing endonuclease life cycle: Identification of mutations that modulate and change I-TevI cleavage preference

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; HOMING ENDONUCLEASE I TEVI; THYMIDYLATE SYNTHASE; UNCLASSIFIED DRUG; I-BMOI ENDONUCLEASE; I-TEVI ENDONUCLEASE; MUTANT PROTEIN;

EID: 84988421084     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw614     Document Type: Article
Times cited : (7)

References (46)
  • 1
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard, B.L. (2005) Homing endonuclease structure and function. Q. Rev. Biophys., 38, 49-95.
    • (2005) Q. Rev. Biophys , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 2
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group i catalytic introns based on comparative sequence analysis
    • Michel, F. and Westhof, E. (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol., 216, 585-610.
    • (1990) J. Mol. Biol , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 3
    • 0024214064 scopus 로고
    • Conserved sequences and structures of group i introns: Building an active site for RNA catalysis -A review
    • Cech, T.R. (1988) Conserved sequences and structures of group I introns: Building an active site for RNA catalysis-a review. Gene, 73, 259-271.
    • (1988) Gene , vol.73 , pp. 259-271
    • Cech, T.R.1
  • 4
    • 0026772764 scopus 로고
    • Homing of a DNA endonuclease gene by meiotic gene conversion in saccharomyces cerevisiae
    • Gimble, F.S. and Thorner, J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in saccharomyces cerevisiae. Nature, 357, 301-306.
    • (1992) Nature , vol.357 , pp. 301-306
    • Gimble, F.S.1    Thorner, J.2
  • 6
    • 0036828959 scopus 로고    scopus 로고
    • Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI
    • Van Roey, P., Meehan, L., Kowalski, J.C., Belfort, M. and Derbyshire, V. (2002) Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI. Nat. Struct. Biol., 9, 806-811.
    • (2002) Nat. Struct. Biol , vol.9 , pp. 806-811
    • Van Roey, P.1    Meehan, L.2    Kowalski, J.C.3    Belfort, M.4    Derbyshire, V.5
  • 7
    • 0016238720 scopus 로고
    • Mitochondrial genetics. VII. Allelism and mapping studies of ribosomal mutants resistant to chloramphenicol, erythromycin and spiramycin in S. Cerevisiae
    • Netter, P., Petrochilo, E., Slonimski, P.P., Bolotin-Fukuhara, M., Coen, D., Deutsch, J. and Dujon, B. (1974) Mitochondrial genetics. VII. allelism and mapping studies of ribosomal mutants resistant to chloramphenicol, erythromycin and spiramycin in S. cerevisiae. Genetics, 78, 1063-1100.
    • (1974) Genetics , vol.78 , pp. 1063-1100
    • Netter, P.1    Petrochilo, E.2    Slonimski, P.P.3    Bolotin-Fukuhara, M.4    Coen, D.5    Deutsch, J.6    Dujon, B.7
  • 8
    • 0022399493 scopus 로고
    • An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene
    • Jacquier, A. and Dujon, B. (1985) An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene. Cell, 41, 383-394.
    • (1985) Cell , vol.41 , pp. 383-394
    • Jacquier, A.1    Dujon, B.2
  • 9
    • 0026772764 scopus 로고
    • Homing of a DNA endonuclease gene by meiotic gene conversion in saccharomyces cerevisiae
    • Gimble, F.S. and Thorner, J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in saccharomyces cerevisiae. Nature, 357, 301-306.
    • (1992) Nature , vol.357 , pp. 301-306
    • Gimble, F.S.1    Thorner, J.2
  • 10
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfish gene
    • Goddard, M.R. and Burt, A. (1999) Recurrent invasion and extinction of a selfish gene. Proc. Natl. Acad. Sci. U.S.A., 96, 13880-13885.
    • (1999) Proc. Natl. Acad. Sci. U.S.A , vol.96 , pp. 13880-13885
    • Goddard, M.R.1    Burt, A.2
  • 11
    • 0024975570 scopus 로고
    • Reverse self-splicing of the tetrahymena group i intron: Implication for the directionality of splicing and for intron transposition
    • Woodson, S.A. and Cech, T.R. (1989) Reverse self-splicing of the tetrahymena group I intron: Implication for the directionality of splicing and for intron transposition. Cell, 57, 335-345.
    • (1989) Cell , vol.57 , pp. 335-345
    • Woodson, S.A.1    Cech, T.R.2
  • 12
    • 0029616336 scopus 로고
    • Mechanisms of intron mobility
    • Belfort, M. and Perlman, P.S. (1995) Mechanisms of intron mobility. J. Biol. Chem., 270, 30237-30240.
    • (1995) J. Biol. Chem , vol.270 , pp. 30237-30240
    • Belfort, M.1    Perlman, P.S.2
  • 13
    • 84934440889 scopus 로고    scopus 로고
    • Homing endonucleases: From genetic anomalies to programmable genomic clippers
    • Belfort, M. and Bonocora, R.P. (2014) Homing endonucleases: From genetic anomalies to programmable genomic clippers. Methods Mol. Biol., 1123, 1-26.
    • (2014) Methods Mol. Biol , vol.1123 , pp. 1-26
    • Belfort, M.1    Bonocora, R.P.2
  • 14
    • 0016614406 scopus 로고
    • Studies on the cleavage of bacteriophage lambda DNA with EcoRI restriction endonuclease
    • Thomas, M. and Davis, R.W. (1975) Studies on the cleavage of bacteriophage lambda DNA with EcoRI restriction endonuclease. J. Mol. Biol., 91, 315-328.
    • (1975) J. Mol. Biol , vol.91 , pp. 315-328
    • Thomas, M.1    Davis, R.W.2
  • 15
    • 44349085906 scopus 로고    scopus 로고
    • Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI
    • Liu, Q., Dansereau, J.T., Puttamadappa, S.S., Shekhtman, A., Derbyshire, V. and Belfort, M. (2008) Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI. J. Mol. Biol., 379, 1094-1106.
    • (2008) J. Mol. Biol , vol.379 , pp. 1094-1106
    • Liu, Q.1    Dansereau, J.T.2    Puttamadappa, S.S.3    Shekhtman, A.4    Derbyshire, V.5    Belfort, M.6
  • 16
    • 33645825399 scopus 로고    scopus 로고
    • Distance determination by GIY-YIG intron endonucleases: Discrimination between repression and cleavage functions
    • Liu, Q., Derbyshire, V., Belfort, M. and Edgell, D.R. (2006) Distance determination by GIY-YIG intron endonucleases: Discrimination between repression and cleavage functions. Nucleic Acids Res., 34, 1755-1764.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1755-1764
    • Liu, Q.1    Derbyshire, V.2    Belfort, M.3    Edgell, D.R.4
  • 18
    • 0028863007 scopus 로고
    • Intron-encoded endonuclease I-TevI binds as a monomer to effect sequential cleavage via conformational changes in the td homing site
    • Mueller, J.E., Smith, D., Bryk, M. and Belfort, M. (1995) Intron-encoded endonuclease I-TevI binds as a monomer to effect sequential cleavage via conformational changes in the td homing site. EMBO J., 14, 5724-5735.
    • (1995) EMBO J , vol.14 , pp. 5724-5735
    • Mueller, J.E.1    Smith, D.2    Bryk, M.3    Belfort, M.4
  • 19
    • 0024965995 scopus 로고
    • Intron mobility in the T-even phages: High frequency inheritance of group i introns promoted by intron open reading frames
    • Quirk, S.M., Bell-Pedersen, D. and Belfort, M. (1989) Intron mobility in the T-even phages: High frequency inheritance of group I introns promoted by intron open reading frames. Cell, 56, 455-465.
    • (1989) Cell , vol.56 , pp. 455-465
    • Quirk, S.M.1    Bell-Pedersen, D.2    Belfort, M.3
  • 20
    • 0025883512 scopus 로고
    • I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target
    • Bell-Pedersen, D., Quirk, S.M., Bryk, M. and Belfort, M. (1991) I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target. Proc. Natl. Acad. Sci. U.S.A., 88, 7719-7723.
    • (1991) Proc. Natl. Acad. Sci. U.S.A , vol.88 , pp. 7719-7723
    • Bell-Pedersen, D.1    Quirk, S.M.2    Bryk, M.3    Belfort, M.4
  • 21
    • 0028943142 scopus 로고
    • Selection of a remote cleavage site by I-tevI, the td intron-encoded endonuclease
    • Bryk, M., Belisle, M., Mueller, J.E. and Belfort, M. (1995) Selection of a remote cleavage site by I-tevI, the td intron-encoded endonuclease. J. Mol. Biol., 247, 197-210.
    • (1995) J. Mol. Biol , vol.247 , pp. 197-210
    • Bryk, M.1    Belisle, M.2    Mueller, J.E.3    Belfort, M.4
  • 22
    • 6244309278 scopus 로고    scopus 로고
    • Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene
    • Edgell, D.R., Stanger, M.J. and Belfort, M. (2004) Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene. J. Mol. Biol., 343, 1231-1241.
    • (2004) J. Mol. Biol , vol.343 , pp. 1231-1241
    • Edgell, D.R.1    Stanger, M.J.2    Belfort, M.3
  • 24
    • 0034940222 scopus 로고    scopus 로고
    • Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites
    • Edgell, D.R. and Shub, D.A. (2001) Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites. Proc. Natl. Acad. Sci. U.S.A., 98, 7898-7903.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 7898-7903
    • Edgell, D.R.1    Shub, D.A.2
  • 25
    • 0037850968 scopus 로고    scopus 로고
    • Importance of a single base pair for discrimination between intron-containing and intronless alleles by endonuclease I-BmoI
    • Edgell, D.R., Stanger, M.J. and Belfort, M. (2003) Importance of a single base pair for discrimination between intron-containing and intronless alleles by endonuclease I-BmoI. Curr. Biol., 13, 973-978.
    • (2003) Curr. Biol , vol.13 , pp. 973-978
    • Edgell, D.R.1    Stanger, M.J.2    Belfort, M.3
  • 26
    • 84878577317 scopus 로고    scopus 로고
    • The monomeric GIY-YIG homing endonuclease I-BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA
    • Kleinstiver, B.P., Wolfs, J.M. and Edgell, D.R. (2013) The monomeric GIY-YIG homing endonuclease I-BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA. Nucleic Acids Res., 41, 5413-5427.
    • (2013) Nucleic Acids Res , vol.41 , pp. 5413-5427
    • Kleinstiver, B.P.1    Wolfs, J.M.2    Edgell, D.R.3
  • 27
    • 0032540751 scopus 로고    scopus 로고
    • I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment
    • Argast, G.M., Stephens, K.M., Emond, M.J. and Monnat, R.J. Jr (1998) I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment. J. Mol. Biol., 280, 345-353.
    • (1998) J. Mol. Biol , vol.280 , pp. 345-353
    • Argast, G.M.1    Stephens, K.M.2    Emond, M.J.3    Monnat, R.J.4
  • 28
    • 0027207339 scopus 로고
    • The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target
    • Bryk, M., Quirk, S.M., Mueller, J.E., Loizos, N., Lawrence, C. and Belfort, M. (1993) The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. EMBO J.2, 2141-2149.
    • (1993) EMBO J , vol.2 , pp. 2141-2149
    • Bryk, M.1    Quirk, S.M.2    Mueller, J.E.3    Loizos, N.4    Lawrence, C.5    Belfort, M.6
  • 29
    • 84904025317 scopus 로고    scopus 로고
    • Type II restriction endonucleases -A historical perspective and more
    • Pingoud, A., Wilson, G.G. and Wende, W. (2014) Type II restriction endonucleases-a historical perspective and more. Nucleic Acids Res., 42, 7489-7527.
    • (2014) Nucleic Acids Res , vol.42 , pp. 7489-7527
    • Pingoud, A.1    Wilson, G.G.2    Wende, W.3
  • 30
    • 0027973379 scopus 로고
    • Evolution of mobile group i introns: Recognition of intron sequences by an intron-encoded endonuclease
    • Loizos, N., Tillier, E.R. and Belfort, M. (1994) Evolution of mobile group I introns: Recognition of intron sequences by an intron-encoded endonuclease. Proc. Natl. Acad. Sci. U.S.A., 91, 11983-11987.
    • (1994) Proc. Natl. Acad. Sci. U.S.A , vol.91 , pp. 11983-11987
    • Loizos, N.1    Tillier, E.R.2    Belfort, M.3
  • 31
    • 0033806414 scopus 로고    scopus 로고
    • Barriers to intron promiscuity in bacteria
    • Edgell, D.R., Belfort, M. and Shub, D.A. (2000) Barriers to intron promiscuity in bacteria. J. Bacteriol., 182, 5281-5289.
    • (2000) J. Bacteriol , vol.182 , pp. 5281-5289
    • Edgell, D.R.1    Belfort, M.2    Shub, D.A.3
  • 32
    • 77952316381 scopus 로고    scopus 로고
    • A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI
    • Kleinstiver, B.P., Fernandes, A.D., Gloor, G.B. and Edgell, D.R. (2010) A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI. Nucleic Acids Res., 38, 2411-2427.
    • (2010) Nucleic Acids Res , vol.38 , pp. 2411-2427
    • Kleinstiver, B.P.1    Fernandes, A.D.2    Gloor, G.B.3    Edgell, D.R.4
  • 35
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill, S.C. and von Hippel, P.H. (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem., 182, 319-326.
    • (1989) Anal. Biochem , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 36
    • 79961180162 scopus 로고    scopus 로고
    • Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering
    • Ulge, U.Y., Baker, D.A. and Monnat, R.J. Jr (2011) Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering. Nucleic Acids Res., 39, 330-4339.
    • (2011) Nucleic Acids Res , vol.39 , pp. 330-4339
    • Ulge, U.Y.1    Baker, D.A.2    Monnat, R.J.3
  • 39
    • 0035898540 scopus 로고    scopus 로고
    • Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate
    • Van Roey, P., Waddling, C.A., Fox, K.M., Belfort, M. and Derbyshire, V. (2001) Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate. EMBO J., 20, 3631-3637.
    • (2001) EMBO J , vol.20 , pp. 3631-3637
    • Van Roey, P.1    Waddling, C.A.2    Fox, K.M.3    Belfort, M.4    Derbyshire, V.5
  • 42
    • 77957803837 scopus 로고    scopus 로고
    • Folding, DNA recognition, and function of GIY-YIG endonucleases: Crystal structures of R.Eco29kI
    • Mak, A.N., Lambert, A.R. and Stoddard, B.L. (2010) Folding, DNA recognition, and function of GIY-YIG endonucleases: Crystal structures of R.Eco29kI. Structure, 18, 1321-1331.
    • (2010) Structure , vol.18 , pp. 1321-1331
    • Mak, A.N.1    Lambert, A.R.2    Stoddard, B.L.3
  • 43
    • 80052719461 scopus 로고    scopus 로고
    • Mining endonuclease cleavage determinants in genomic sequence data
    • Szeto, M.D., Boissel, S.J., Baker, D. and Thyme, S.B. (2011) Mining endonuclease cleavage determinants in genomic sequence data. J. Biol. Chem., 286, 32617-32627.
    • (2011) J. Biol. Chem , vol.286 , pp. 32617-32627
    • Szeto, M.D.1    Boissel, S.J.2    Baker, D.3    Thyme, S.B.4
  • 45
    • 79952332536 scopus 로고    scopus 로고
    • Hpy188I-DNA pre-and post-cleavage complexes-snapshots of the GIY-YIG nuclease mediated catalysis
    • Sokolowska, M., Czapinska, H. and Bochtler, M. (2011) Hpy188I-DNA pre-and post-cleavage complexes-snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 1554-1564.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1554-1564
    • Sokolowska, M.1    Czapinska, H.2    Bochtler, M.3


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