-
1
-
-
0033982651
-
Role of linkers in communication between protein modules
-
Gokhale R.S., and Khosla C. Role of linkers in communication between protein modules. Cur. Opin. Chem. Biol. 4 (2000) 22-27
-
(2000)
Cur. Opin. Chem. Biol.
, vol.4
, pp. 22-27
-
-
Gokhale, R.S.1
Khosla, C.2
-
2
-
-
33144464467
-
Control of protein functional dynamics by peptide linkers
-
Wriggers W., Chakravarty S., and Jennings P.A. Control of protein functional dynamics by peptide linkers. Biopolymers 80 (2005) 736-746
-
(2005)
Biopolymers
, vol.80
, pp. 736-746
-
-
Wriggers, W.1
Chakravarty, S.2
Jennings, P.A.3
-
3
-
-
33646191793
-
GIY-YIG homing endonucleases-beads on a string
-
Belfort M., Derbyshire V., Stoddard B.L., and Wood D.W. (Eds), Springer-Verlag, Berlin
-
Van Roey P., and Derbyshire V. GIY-YIG homing endonucleases-beads on a string. In: Belfort M., Derbyshire V., Stoddard B.L., and Wood D.W. (Eds). Homing Endonucleases and Inteins (2005), Springer-Verlag, Berlin 67-83
-
(2005)
Homing Endonucleases and Inteins
, pp. 67-83
-
-
Van Roey, P.1
Derbyshire, V.2
-
4
-
-
0033562780
-
Configuration of the catalytic domain of intron endonuclease I-TevI: coincidence of computational and molecular findings
-
Kowalski J.C., Belfort M., Stapleton M.A., Holpert M., Dansereau J.T., Pietrokovski S., et al. Configuration of the catalytic domain of intron endonuclease I-TevI: coincidence of computational and molecular findings. Nucleic Acids Res. 27 (1999) 2115-2125
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2115-2125
-
-
Kowalski, J.C.1
Belfort, M.2
Stapleton, M.A.3
Holpert, M.4
Dansereau, J.T.5
Pietrokovski, S.6
-
5
-
-
33645825399
-
Distance determination by GIY-YIG intron endonucleases: discrimination between repression and cleavage functions
-
Liu Q.-Q., Derbyshire V., Belfort M., and Edgell D.R. Distance determination by GIY-YIG intron endonucleases: discrimination between repression and cleavage functions. Nucleic Acids Res. 34 (2006) 1755-1764
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1755-1764
-
-
Liu, Q.-Q.1
Derbyshire, V.2
Belfort, M.3
Edgell, D.R.4
-
6
-
-
33748867012
-
Phylogenomic analysis of the GIY-YIG nuclease superfamily
-
Dunin-Horkawicz S., Feder M., and Bujnicki J.M. Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics 7 (2006) 98
-
(2006)
BMC Genomics
, vol.7
, pp. 98
-
-
Dunin-Horkawicz, S.1
Feder, M.2
Bujnicki, J.M.3
-
7
-
-
0025340541
-
Intron mobility in phage T4 is dependent upon a distinctive class of endonucleases and independent of DNA sequences encoding the intron core: mechanistic and evolutionary implications
-
Bell-Pedersen D., Quirk S., Clyman J., and Belfort M. Intron mobility in phage T4 is dependent upon a distinctive class of endonucleases and independent of DNA sequences encoding the intron core: mechanistic and evolutionary implications. Nucleic Acids Res. 18 (1990) 3763-3770
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3763-3770
-
-
Bell-Pedersen, D.1
Quirk, S.2
Clyman, J.3
Belfort, M.4
-
8
-
-
0025339385
-
Characterization of the restriction site of a prokaryotic intron-encoded endonuclease
-
Chu F.K., Maley G., Pedersen-Lane J., Wang A.-M., and Maley F. Characterization of the restriction site of a prokaryotic intron-encoded endonuclease. Proc. Natl Acad. Sci. USA 87 (1990) 3574-3578
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 3574-3578
-
-
Chu, F.K.1
Maley, G.2
Pedersen-Lane, J.3
Wang, A.-M.4
Maley, F.5
-
9
-
-
0025883512
-
I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target
-
Bell-Pedersen D., Quirk S.M., Bryk M., and Belfort M. I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target. Proc. Natl Acad. Sci. USA 88 (1991) 7719-7723
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 7719-7723
-
-
Bell-Pedersen, D.1
Quirk, S.M.2
Bryk, M.3
Belfort, M.4
-
10
-
-
0035898540
-
Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate
-
Van Roey P., Waddling C.A., Fox K.M., Belfort M., and Derbyshire V. Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate. EMBO J. 20 (2001) 3631-3637
-
(2001)
EMBO J.
, vol.20
, pp. 3631-3637
-
-
Van Roey, P.1
Waddling, C.A.2
Fox, K.M.3
Belfort, M.4
Derbyshire, V.5
-
11
-
-
0028943142
-
Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease
-
Bryk M., Belisle M., Mueller J.E., and Belfort M. Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease. J. Mol. Biol. 247 (1995) 197-210
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 197-210
-
-
Bryk, M.1
Belisle, M.2
Mueller, J.E.3
Belfort, M.4
-
12
-
-
6244309278
-
Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene
-
Edgell D.R., Stanger M.J., and Belfort M. Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene. J. Mol. Biol. 343 (2004) 1231-1241
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1231-1241
-
-
Edgell, D.R.1
Stanger, M.J.2
Belfort, M.3
-
13
-
-
0037172989
-
Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI
-
Dean A.B., Stanger M.J., Dansereau J.T., Van Roey P., Derbyshire V., and Belfort M. Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI. Proc. Natl Acad. Sci. USA 99 (2002) 8554-8561
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8554-8561
-
-
Dean, A.B.1
Stanger, M.J.2
Dansereau, J.T.3
Van Roey, P.4
Derbyshire, V.5
Belfort, M.6
-
14
-
-
0036828959
-
Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI
-
Van Roey P., Meehan L., Kowalski J., Belfort M., and Derbyshire V. Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI. Nature Struct. Biol. 9 (2002) 806-811
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 806-811
-
-
Van Roey, P.1
Meehan, L.2
Kowalski, J.3
Belfort, M.4
Derbyshire, V.5
-
15
-
-
0034940222
-
Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites
-
Edgell D.R., and Shub D.A. Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites. Proc. Natl Acad. Sci. USA 98 (2001) 7898-7903
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 7898-7903
-
-
Edgell, D.R.1
Shub, D.A.2
-
16
-
-
0031556945
-
Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site
-
Derbyshire V., Kowalski J.C., Dansereau J.T., Hauer C.R., and Belfort M. Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site. J. Mol. Biol. 265 (1997) 494-506
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 494-506
-
-
Derbyshire, V.1
Kowalski, J.C.2
Dansereau, J.T.3
Hauer, C.R.4
Belfort, M.5
-
17
-
-
34247326876
-
Autonomous folding of interdomain regions of a modular polyketide synthase
-
Richter C.D., Stanmore D.A., Miguel R.N., Moncrieffe M.C., Tran L., Brewerton S., et al. Autonomous folding of interdomain regions of a modular polyketide synthase. FEBS J. 274 (2007) 2196-2209
-
(2007)
FEBS J.
, vol.274
, pp. 2196-2209
-
-
Richter, C.D.1
Stanmore, D.A.2
Miguel, R.N.3
Moncrieffe, M.C.4
Tran, L.5
Brewerton, S.6
-
19
-
-
34548184125
-
Residual structure, backbone dynamics, and interactions within the synuclein family
-
Sung Y.H., and Eliezer D. Residual structure, backbone dynamics, and interactions within the synuclein family. J. Mol. Biol. 372 (2007) 689-707
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 689-707
-
-
Sung, Y.H.1
Eliezer, D.2
-
21
-
-
4744359807
-
Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor
-
Edgell D.R., Derbyshire V., Van Roey P., LaBonne S., Stanger M.J., Li Z., et al. Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor. Nature Struct. Mol. Biol. 11 (2004) 936-944
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 936-944
-
-
Edgell, D.R.1
Derbyshire, V.2
Van Roey, P.3
LaBonne, S.4
Stanger, M.J.5
Li, Z.6
-
22
-
-
0034705128
-
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
-
Young M.M., Tang N., Hempel J.C., Oshiro C.M., Taylor E.W., Kuntz I.D., Gibson B.W., and Dollinger G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc. Natl Acad. Sci. USA 97 (2000) 5802-5806
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5802-5806
-
-
Young, M.M.1
Tang, N.2
Hempel, J.C.3
Oshiro, C.M.4
Taylor, E.W.5
Kuntz, I.D.6
Gibson, B.W.7
Dollinger, G.8
-
23
-
-
33746820661
-
From monomeric to homodimeric endonucleases and back: engineering novel specificity of LAGLIDADG enzymes
-
Silva G.H., Belfort M., Wende W., and Pingoud A. From monomeric to homodimeric endonucleases and back: engineering novel specificity of LAGLIDADG enzymes. J. Mol. Biol. 361 (2006) 744-754
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 744-754
-
-
Silva, G.H.1
Belfort, M.2
Wende, W.3
Pingoud, A.4
-
24
-
-
36849085295
-
Crystal structure of an unusual thioredoxin protein with a zinc finger domain
-
Ye J., Cho S.-H., Fuselier J., Li W., Beckwith J., and Rapoport T.A. Crystal structure of an unusual thioredoxin protein with a zinc finger domain. J. Biol. Chem. 282 (2007) 34945-34959
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 34945-34959
-
-
Ye, J.1
Cho, S.-H.2
Fuselier, J.3
Li, W.4
Beckwith, J.5
Rapoport, T.A.6
-
25
-
-
23844456247
-
Penelope-like elements-a new class of retroelements: distribution, function and possible evolutionary significance
-
Evgen'ev M.B., and Arkhipova I.R. Penelope-like elements-a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet. Genome Res. 110 (2005) 510-521
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 510-521
-
-
Evgen'ev, M.B.1
Arkhipova, I.R.2
-
26
-
-
0142164912
-
SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site
-
Liu Q., Belle A., Shub D.A., Belfort M., and Edgell D.R. SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site. J. Mol. Biol. 334 (2003) 13-23
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 13-23
-
-
Liu, Q.1
Belle, A.2
Shub, D.A.3
Belfort, M.4
Edgell, D.R.5
-
27
-
-
0003489517
-
-
Academic Press, San Diego
-
Cavanagh J., Fairbrother W.J., Palmer A.G., and Skelton N.J. Protein NMR Spectroscopy: Principles and Practice (1996), Academic Press, San Diego
-
(1996)
Protein NMR Spectroscopy: Principles and Practice
-
-
Cavanagh, J.1
Fairbrother, W.J.2
Palmer, A.G.3
Skelton, N.J.4
-
28
-
-
15844385659
-
AutoLink: automated sequential resonance assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic
-
Masse J.E., and Keller R. AutoLink: automated sequential resonance assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic. J. Magn. Reson. 174 (2005) 133-151
-
(2005)
J. Magn. Reson.
, vol.174
, pp. 133-151
-
-
Masse, J.E.1
Keller, R.2
|