메뉴 건너뛰기




Volumn 48, Issue 10, 2016, Pages 1131-1141

Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance

(89)  Secrier, Maria a   Li, Xiaodun b   De Silva, Nadeera b   Eldridge, Matthew D a   Contino, Gianmarco b   Bornschein, Jan b   Macrae, Shona b   Grehan, Nicola b   O'Donovan, Maria b,c   Miremadi, Ahmad b,c   Yang, Tsun Po b   Bower, Lawrence a   Chettouh, Hamza b   Crawte, Jason b   Galeano Dalmau, Núria b   Grabowska, Anna d   Saunders, John e   Underwood, Tim f,g   Waddell, Nicola h   Barbour, Andrew P i   more..


Author keywords

[No Author keywords available]

Indexed keywords

2 ALLYL 1 [6 (1 HYDROXY 1 METHYLETHYL) 2 PYRIDINYL] 6 [4 (4 METHYL 1 PIPERAZINYL)ANILINO] 1H PYRAZOLO[3,4 D]PYRIMIDIN 3(2H) ONE; 5 (3 FLUOROPHENYL) N (3 PIPERIDINYL) 3 UREIDO 2 THIOPHENECARBOXAMIDE; AZD 4547; CD8 ANTIGEN; CRIZOTINIB; EPIDERMAL GROWTH FACTOR RECEPTOR; EPIDERMAL GROWTH FACTOR RECEPTOR 2; LAPATINIB; MITOGEN ACTIVATED PROTEIN KINASE; OLAPARIB; PHOSPHATIDYLINOSITOL 3 KINASE; PROTEIN MDM2; PROTEIN TYROSINE KINASE; TRANSCRIPTION FACTOR GATA 4; TRANSCRIPTION FACTOR GATA 6; TUMOR ANTIGEN; ANTINEOPLASTIC AGENT; DNA; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE INHIBITOR;

EID: 84987629410     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3659     Document Type: Article
Times cited : (295)

References (83)
  • 1
    • 84918815964 scopus 로고    scopus 로고
    • Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012
    • Ferlay, J. et al. Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. Int. J. Cancer 136, E359-E386 (2015).
    • (2015) Int. J. Cancer , vol.136 , pp. E359-E386
    • Ferlay, J.1
  • 2
    • 51049091878 scopus 로고    scopus 로고
    • Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age
    • Brown, L. M., Devesa, S. S. & Chow, W. H. Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age. J. Natl. Cancer Inst. 100, 1184-1187 (2008).
    • (2008) J. Natl. Cancer Inst. , vol.100 , pp. 1184-1187
    • Brown, L.M.1    Devesa, S.S.2    Chow, W.H.3
  • 3
    • 77649332271 scopus 로고    scopus 로고
    • Capecitabine and oxaliplatin for advanced esophagogastric cancer
    • Cunningham, D., Okines, A. F. & Ashley, S. Capecitabine and oxaliplatin for advanced esophagogastric cancer. N. Engl. J. Med. 362, 858-859 (2010).
    • (2010) N. Engl. J. Med. , vol.362 , pp. 858-859
    • Cunningham, D.1    Okines, A.F.2    Ashley, S.3
  • 4
    • 76949094319 scopus 로고    scopus 로고
    • Long-term results of a randomized trial of surgery with or without preoperative chemotherapy in esophageal cancer
    • Allum, W. H., Stenning, S. P., Bancewicz, J., Clark, P. I. & Langley, R. E. Long-term results of a randomized trial of surgery with or without preoperative chemotherapy in esophageal cancer. J. Clin. Oncol. 27, 5062-5067 (2009).
    • (2009) J. Clin. Oncol. , vol.27 , pp. 5062-5067
    • Allum, W.H.1    Stenning, S.P.2    Bancewicz, J.3    Clark, P.I.4    Langley, R.E.5
  • 5
    • 33745726677 scopus 로고    scopus 로고
    • Perioperative chemotherapy versus surgery alone for resectable gastroesophageal cancer
    • Cunningham, D. et al. Perioperative chemotherapy versus surgery alone for resectable gastroesophageal cancer. N. Engl. J. Med. 355, 11-20 (2006).
    • (2006) N. Engl. J. Med. , vol.355 , pp. 11-20
    • Cunningham, D.1
  • 6
    • 84861679981 scopus 로고    scopus 로고
    • Preoperative chemoradiotherapy for esophageal or junctional cancer
    • van Hagen, P. et al. Preoperative chemoradiotherapy for esophageal or junctional cancer. N. Engl. J. Med. 366, 2074-2084 (2012).
    • (2012) N. Engl. J. Med. , vol.366 , pp. 2074-2084
    • Van Hagen, P.1
  • 7
    • 77956262693 scopus 로고    scopus 로고
    • Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): A phase 3, open-label, randomised controlled trial
    • Bang, Y. J. et al. Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): a phase 3, open-label, randomised controlled trial. Lancet 376, 687-697 (2010).
    • (2010) Lancet , vol.376 , pp. 687-697
    • Bang, Y.J.1
  • 8
    • 84922068082 scopus 로고    scopus 로고
    • Genetic landscape of esophageal squamous cell carcinoma
    • Gao, Y. B. et al. Genetic landscape of esophageal squamous cell carcinoma. Nat. Genet. 46, 1097-1102 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 1097-1102
    • Gao, Y.B.1
  • 9
    • 84929129284 scopus 로고    scopus 로고
    • Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets
    • Schulze, K. et al. Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets. Nat. Genet. 47, 505-511 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 505-511
    • Schulze, K.1
  • 10
    • 84935009372 scopus 로고    scopus 로고
    • Genomic classification of cutaneous melanoma
    • Cancer Genome Atlas Network.
    • Cancer Genome Atlas Network. Genomic classification of cutaneous melanoma. Cell 161, 1681-1696 (2015).
    • (2015) Cell , vol.161 , pp. 1681-1696
  • 11
    • 84924056345 scopus 로고    scopus 로고
    • Whole genomes redefine the mutational landscape of pancreatic cancer
    • Waddell, N. et al. Whole genomes redefine the mutational landscape of pancreatic cancer. Nature 518, 495-501 (2015).
    • (2015) Nature , vol.518 , pp. 495-501
    • Waddell, N.1
  • 12
    • 84922551107 scopus 로고    scopus 로고
    • Trans-ancestry mutational landscape of hepatocellular carcinoma genomes
    • Totoki, Y. et al. Trans-ancestry mutational landscape of hepatocellular carcinoma genomes. Nat. Genet. 46, 1267-1273 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 1267-1273
    • Totoki, Y.1
  • 13
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • Cancer Genome Atlas Research Network.
    • Cancer Genome Atlas Research Network. Comprehensive molecular characterization of gastric adenocarcinoma. Nature 513, 202-209 (2014).
    • (2014) Nature , vol.513 , pp. 202-209
  • 14
    • 84905029258 scopus 로고    scopus 로고
    • Comprehensive molecular profiling of lung adenocarcinoma
    • Cancer Genome Atlas Research Network.
    • Cancer Genome Atlas Research Network. Comprehensive molecular profiling of lung adenocarcinoma. Nature 511, 543-550 (2014).
    • (2014) Nature , vol.511 , pp. 543-550
  • 15
    • 84941962196 scopus 로고    scopus 로고
    • Precision medicine for advanced pancreas cancer: The Individualized Molecular Pancreatic Cancer Therapy (IMPaCT) Trial
    • Chantrill, L. A. et al. Precision medicine for advanced pancreas cancer: The Individualized Molecular Pancreatic Cancer Therapy (IMPaCT) Trial. Clin. Cancer Res. 21, 2029-2037 (2015).
    • (2015) Clin. Cancer Res. , vol.21 , pp. 2029-2037
    • Chantrill, L.A.1
  • 16
    • 84878593111 scopus 로고    scopus 로고
    • Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
    • Dulak, A. M. et al. Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity. Nat. Genet. 45, 478-486 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 478-486
    • Dulak, A.M.1
  • 17
    • 84905502758 scopus 로고    scopus 로고
    • Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis
    • Weaver, J. M. et al. Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis. Nat. Genet. 46, 837-843 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 837-843
    • Weaver, J.M.1
  • 18
    • 84923538176 scopus 로고    scopus 로고
    • Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis
    • Nones, K. et al. Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis. Nat. Commun. 5, 5224 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 5224
    • Nones, K.1
  • 19
    • 84884994218 scopus 로고    scopus 로고
    • The Cancer Genome Atlas Pan-Cancer analysis project
    • Cancer Genome Atlas Research Network.,et al.
    • Cancer Genome Atlas Research Network. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet. 45, 1113-1120 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1113-1120
  • 20
    • 84936772804 scopus 로고    scopus 로고
    • Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis
    • Paterson, A. L. et al. Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis. BMC Genomics 16, 473 (2015).
    • (2015) BMC Genomics , vol.16 , pp. 473
    • Paterson, A.L.1
  • 21
    • 84905900534 scopus 로고    scopus 로고
    • Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
    • Tubio, J. M. et al. Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science 345, 1251343 (2014).
    • (2014) Science , vol.345 , pp. 1251343
    • Tubio, J.M.1
  • 22
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2. 0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • Mermel, C. H. et al. GISTIC2. 0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol. 12, R41 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R41
    • Mermel, C.H.1
  • 23
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M. S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 24
    • 84861550476 scopus 로고    scopus 로고
    • The life history of 21 breast cancers
    • Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007 (2012).
    • (2012) Cell , vol.149 , pp. 994-1007
    • Nik-Zainal, S.1
  • 25
    • 84876131794 scopus 로고    scopus 로고
    • Characterization of the timing and prevalence of receptor tyrosine kinase expression changes in oesophageal carcinogenesis
    • Paterson, A. L. et al. Characterization of the timing and prevalence of receptor tyrosine kinase expression changes in oesophageal carcinogenesis. J. Pathol. 230, 118-128 (2013).
    • (2013) J. Pathol. , vol.230 , pp. 118-128
    • Paterson, A.L.1
  • 26
    • 84938973205 scopus 로고    scopus 로고
    • HER2 screening data from ToGA: Targeting HER2 in gastric and gastroesophageal junction cancer
    • Van Cutsem, E. et al. HER2 screening data from ToGA: targeting HER2 in gastric and gastroesophageal junction cancer. Gastric Cancer 18, 476-484 (2015).
    • (2015) Gastric Cancer , vol.18 , pp. 476-484
    • Van Cutsem, E.1
  • 27
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L. B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013).
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 28
    • 84953204417 scopus 로고    scopus 로고
    • A simple model-based approach to inferring and visualizing cancer mutation signatures
    • Shiraishi, Y., Tremmel, G., Miyano, S. & Stephens, M. A simple model-based approach to inferring and visualizing cancer mutation signatures. PLoS Genet. 11, e1005657 (2015).
    • (2015) PLoS Genet , vol.11 , pp. e1005657
    • Shiraishi, Y.1    Tremmel, G.2    Miyano, S.3    Stephens, M.4
  • 29
    • 84947743770 scopus 로고    scopus 로고
    • SomaticSignatures: Inferring mutational signatures from single-nucleotide variants
    • Gehring, J. S., Fischer, B., Lawrence, M. & Huber, W. SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinformatics 31, 3673-3675 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 3673-3675
    • Gehring, J.S.1    Fischer, B.2    Lawrence, M.3    Huber, W.4
  • 31
    • 85018228755 scopus 로고    scopus 로고
    • ARID1A deficiency impairs the DNA damage checkpoint and sensitizes cells to PARP inhibitors
    • Shen, J. et al. ARID1A deficiency impairs the DNA damage checkpoint and sensitizes cells to PARP inhibitors. Cancer Discov. 5, 752-767 (2015).
    • (2015) Cancer Discov. , vol.5 , pp. 752-767
    • Shen, J.1
  • 32
    • 77954801079 scopus 로고    scopus 로고
    • Improved survival with ipilimumab in patients with metastatic melanoma
    • Hodi, F. S. et al. Improved survival with ipilimumab in patients with metastatic melanoma. N. Engl. J. Med. 363, 711-723 (2010).
    • (2010) N. Engl. J. Med. , vol.363 , pp. 711-723
    • Hodi, F.S.1
  • 33
    • 84936147067 scopus 로고    scopus 로고
    • Combined nivolumab and ipilimumab or monotherapy in untreated melanoma
    • Larkin, J. et al. Combined nivolumab and ipilimumab or monotherapy in untreated melanoma. N. Engl. J. Med. 373, 23-34 (2015).
    • (2015) N. Engl. J. Med. , vol.373 , pp. 23-34
    • Larkin, J.1
  • 34
    • 84950117835 scopus 로고    scopus 로고
    • Pembrolizumab versus docetaxel for previously treated, PDL1-positive, advanced non-small-cell lung cancer (KEYNOTE-010): A randomised controlled trial
    • Herbst, R. S. et al. Pembrolizumab versus docetaxel for previously treated, PDL1-positive, advanced non-small-cell lung cancer (KEYNOTE-010): a randomised controlled trial. Lancet 387, 1540-1550 (2016).
    • (2016) Lancet , vol.387 , pp. 1540-1550
    • Herbst, R.S.1
  • 35
    • 84928761118 scopus 로고    scopus 로고
    • Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
    • Rizvi, N. A. et al. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348, 124-128 (2015).
    • (2015) Science , vol.348 , pp. 124-128
    • Rizvi, N.A.1
  • 36
    • 84918828514 scopus 로고    scopus 로고
    • Genetic basis for clinical response to CTLA-4 blockade in melanoma
    • Snyder, A. et al. Genetic basis for clinical response to CTLA-4 blockade in melanoma. N. Engl. J. Med. 371, 2189-2199 (2014).
    • (2014) N. Engl. J. Med. , vol.371 , pp. 2189-2199
    • Snyder, A.1
  • 37
    • 84962301577 scopus 로고    scopus 로고
    • Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
    • McGranahan, N. et al. Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade. Science 351, 1463-1469 (2016).
    • (2016) Science , vol.351 , pp. 1463-1469
    • McGranahan, N.1
  • 38
    • 84943516465 scopus 로고    scopus 로고
    • Genomic correlates of response to CTLA-4 blockade in metastatic melanoma
    • Van Allen, E. M. et al. Genomic correlates of response to CTLA-4 blockade in metastatic melanoma. Science 350, 207-211 (2015).
    • (2015) Science , vol.350 , pp. 207-211
    • Van Allen, E.M.1
  • 39
    • 84920956732 scopus 로고    scopus 로고
    • PD-1 blockade induces responses by inhibiting adaptive immune resistance
    • Tumeh, P. C. et al. PD-1 blockade induces responses by inhibiting adaptive immune resistance. Nature 515, 568-571 (2014).
    • (2014) Nature , vol.515 , pp. 568-571
    • Tumeh, P.C.1
  • 40
    • 33847611968 scopus 로고    scopus 로고
    • Programmed cell death 1 ligand 1 and tumor-infiltrating CD8+ T lymphocytes are prognostic factors of human ovarian cancer
    • Hamanishi, J. et al. Programmed cell death 1 ligand 1 and tumor-infiltrating CD8+ T lymphocytes are prognostic factors of human ovarian cancer. Proc. Natl. Acad. Sci. USA 104, 3360-3365 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3360-3365
    • Hamanishi, J.1
  • 41
    • 84924262796 scopus 로고    scopus 로고
    • An update on PARP inhibitors for the treatment of cancer
    • Benafif, S. & Hall, M. An update on PARP inhibitors for the treatment of cancer. Onco Targets Ther. 8, 519-528 (2015).
    • (2015) Onco Targets Ther. , vol.8 , pp. 519-528
    • Benafif, S.1    Hall, M.2
  • 42
    • 84924760015 scopus 로고    scopus 로고
    • Olaparib combined with chemotherapy for recurrent platinumsensitive ovarian cancer: A randomised phase 2 trial
    • Oza, A. M. et al. Olaparib combined with chemotherapy for recurrent platinumsensitive ovarian cancer: a randomised phase 2 trial. Lancet Oncol. 16, 87-97 (2015).
    • (2015) Lancet Oncol. , vol.16 , pp. 87-97
    • Oza, A.M.1
  • 43
    • 85006200875 scopus 로고    scopus 로고
    • Effects of topoisomerase inhibitors that induce DNA damage response on glucose metabolism and PI3K/Akt/mTOR signaling in multiple myeloma cells
    • Demel, H. R. et al. Effects of topoisomerase inhibitors that induce DNA damage response on glucose metabolism and PI3K/Akt/mTOR signaling in multiple myeloma cells. Am. J. Cancer Res. 5, 1649-1664 (2015).
    • (2015) Am. J. Cancer Res. , vol.5 , pp. 1649-1664
    • Demel, H.R.1
  • 44
    • 17244373777 scopus 로고    scopus 로고
    • Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy
    • Farmer, H. et al. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. Nature 434, 917-921 (2005).
    • (2005) Nature , vol.434 , pp. 917-921
    • Farmer, H.1
  • 45
    • 0027970713 scopus 로고
    • DNA damage triggers a prolonged p53-dependent G1 arrest and long-term induction of Cip1 in normal human fibroblasts
    • Di Leonardo, A., Linke, S. P., Clarkin, K. & Wahl, G. M. DNA damage triggers a prolonged p53-dependent G1 arrest and long-term induction of Cip1 in normal human fibroblasts. Genes Dev. 8, 2540-2551 (1994).
    • (1994) Genes Dev. , vol.8 , pp. 2540-2551
    • Di Leonardo, A.1    Linke, S.P.2    Clarkin, K.3    Wahl, G.M.4
  • 46
    • 0032411640 scopus 로고    scopus 로고
    • A p53-dependent S-phase checkpoint helps to protect cells from DNA damage in response to starvation for pyrimidine nucleotides
    • Agarwal, M. L. et al. A p53-dependent S-phase checkpoint helps to protect cells from DNA damage in response to starvation for pyrimidine nucleotides. Proc. Natl. Acad. Sci. USA 95, 14775-14780 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14775-14780
    • Agarwal, M.L.1
  • 47
    • 84873739385 scopus 로고    scopus 로고
    • A potent Chk1 inhibitor is selectively cytotoxic in melanomas with high levels of replicative stress
    • Brooks, K. et al. A potent Chk1 inhibitor is selectively cytotoxic in melanomas with high levels of replicative stress. Oncogene 32, 788-796 (2013).
    • (2013) Oncogene , vol.32 , pp. 788-796
    • Brooks, K.1
  • 48
    • 84925467402 scopus 로고    scopus 로고
    • Chk1 and Wee1 control genotoxic-stress induced G2-M arrest in melanoma cells
    • Vera, J. et al. Chk1 and Wee1 control genotoxic-stress induced G2-M arrest in melanoma cells. Cell. Signal. 27, 951-960 (2015).
    • (2015) Cell. Signal. , vol.27 , pp. 951-960
    • Vera, J.1
  • 49
    • 17644432403 scopus 로고    scopus 로고
    • Chk1 is an essential kinase that is regulated by Atr and required for the G2/M DNA damage checkpoint
    • Liu, Q. et al. Chk1 is an essential kinase that is regulated by Atr and required for the G2/M DNA damage checkpoint. Genes Dev. 14, 1448-1459 (2000).
    • (2000) Genes Dev. , vol.14 , pp. 1448-1459
    • Liu, Q.1
  • 50
    • 0029048491 scopus 로고
    • Regulation of the human WEE1Hu CDK tyrosine 15-kinase during the cell cycle
    • Watanabe, N., Broome, M. & Hunter, T. Regulation of the human WEE1Hu CDK tyrosine 15-kinase during the cell cycle. EMBO J. 14, 1878-1891 (1995).
    • (1995) EMBO J. , vol.14 , pp. 1878-1891
    • Watanabe, N.1    Broome, M.2    Hunter, T.3
  • 51
    • 84928974420 scopus 로고    scopus 로고
    • Prospective derivation of a living organoid biobank of colorectal cancer patients
    • van de Wetering, M. et al. Prospective derivation of a living organoid biobank of colorectal cancer patients. Cell 161, 933-945 (2015).
    • (2015) Cell , vol.161 , pp. 933-945
    • Van De Wetering, M.1
  • 52
    • 67349123408 scopus 로고    scopus 로고
    • Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
    • Sato, T. et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 459, 262-265 (2009).
    • (2009) Nature , vol.459 , pp. 262-265
    • Sato, T.1
  • 53
    • 84884997982 scopus 로고    scopus 로고
    • Emerging landscape of oncogenic signatures across human cancers
    • Ciriello, G. et al. Emerging landscape of oncogenic signatures across human cancers. Nat. Genet. 45, 1127-1133 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1127-1133
    • Ciriello, G.1
  • 54
    • 2942667930 scopus 로고    scopus 로고
    • Point mutations in the RUNX1/AML1 gene: Another actor in RUNX leukemia
    • Osato, M. Point mutations in the RUNX1/AML1 gene: another actor in RUNX leukemia. Oncogene 23, 4284-4296 (2004).
    • (2004) Oncogene , vol.23 , pp. 4284-4296
    • Osato, M.1
  • 55
    • 84901664854 scopus 로고    scopus 로고
    • Genomic scars as biomarkers of homologous recombination deficiency and drug response in breast and ovarian cancers
    • Watkins, J. A., Irshad, S., Grigoriadis, A. & Tutt, A. N. Genomic scars as biomarkers of homologous recombination deficiency and drug response in breast and ovarian cancers. Breast Cancer Res. 16, 211 (2014).
    • (2014) Breast Cancer Res. , vol.16 , pp. 211
    • Watkins, J.A.1    Irshad, S.2    Grigoriadis, A.3    Tutt, A.N.4
  • 57
    • 84903547236 scopus 로고    scopus 로고
    • Olaparib maintenance therapy in patients with platinumsensitive relapsed serous ovarian cancer: A preplanned retrospective analysis of outcomes by BRCA status in a randomised phase 2 trial
    • Ledermann, J. et al. Olaparib maintenance therapy in patients with platinumsensitive relapsed serous ovarian cancer: a preplanned retrospective analysis of outcomes by BRCA status in a randomised phase 2 trial. Lancet Oncol. 15, 852-861 (2014).
    • (2014) Lancet Oncol. , vol.15 , pp. 852-861
    • Ledermann, J.1
  • 58
    • 84944150577 scopus 로고    scopus 로고
    • Extent of radiosensitization by the PARP inhibitor olaparib depends on its dose, the radiation dose and the integrity of the homologous recombination pathway of tumor cells
    • Verhagen, C. V. et al. Extent of radiosensitization by the PARP inhibitor olaparib depends on its dose, the radiation dose and the integrity of the homologous recombination pathway of tumor cells. Radiother. Oncol. 116, 358-365 (2015).
    • (2015) Radiother. Oncol. , vol.116 , pp. 358-365
    • Verhagen, C.V.1
  • 59
    • 84989768532 scopus 로고    scopus 로고
    • Adaptive immune resistance in gastro-esophageal cancer: Correlating tumoral/stromal PDL1 expression with CD8+ cell count
    • abstr. 4031
    • Kelly, R. J. et al. Adaptive immune resistance in gastro-esophageal cancer: correlating tumoral/stromal PDL1 expression with CD8+ cell count. J. Clin. Oncol. 33, abstr. 4031 (2015).
    • (2015) J. Clin. Oncol. , vol.33
    • Kelly, R.J.1
  • 60
    • 84940556535 scopus 로고    scopus 로고
    • Genomic spectra of biliary tract cancer
    • Nakamura, H. et al. Genomic spectra of biliary tract cancer. Nat. Genet. 47, 1003-1010 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 1003-1010
    • Nakamura, H.1
  • 61
    • 80052491760 scopus 로고    scopus 로고
    • MK-1775, a novel Wee1 kinase inhibitor, radiosensitizes p53-defective human tumor cells
    • Bridges, K. A. et al. MK-1775, a novel Wee1 kinase inhibitor, radiosensitizes p53-defective human tumor cells. Clin. Cancer Res. 17, 5638-5648 (2011).
    • (2011) Clin. Cancer Res. , vol.17 , pp. 5638-5648
    • Bridges, K.A.1
  • 62
    • 0035890610 scopus 로고    scopus 로고
    • Radiosensitization of p53 mutant cells by PD0166285, a novel G2 checkpoint abrogator
    • Wang, Y. et al. Radiosensitization of p53 mutant cells by PD0166285, a novel G2 checkpoint abrogator. Cancer Res. 61, 8211-8217 (2001).
    • (2001) Cancer Res. , vol.61 , pp. 8211-8217
    • Wang, Y.1
  • 63
    • 84941367626 scopus 로고    scopus 로고
    • APR-246 potently inhibits tumour growth and overcomes chemoresistance in preclinical models of oesophageal adenocarcinoma
    • Liu, D. S. et al. APR-246 potently inhibits tumour growth and overcomes chemoresistance in preclinical models of oesophageal adenocarcinoma. Gut 64, 1506-1516 (2015).
    • (2015) Gut , vol.64 , pp. 1506-1516
    • Liu, D.S.1
  • 64
    • 84946749847 scopus 로고    scopus 로고
    • Titration of signalling output: Insights into clinical combinations of MEK and AKT inhibitors
    • Stewart, A., Thavasu, P., de Bono, J. S. & Banerji, U. Titration of signalling output: insights into clinical combinations of MEK and AKT inhibitors. Ann. Oncol. 26, 1504-1510 (2015).
    • (2015) Ann. Oncol. , vol.26 , pp. 1504-1510
    • Stewart, A.1    Thavasu, P.2    De Bono, J.S.3    Banerji, U.4
  • 65
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 66
    • 84864153492 scopus 로고    scopus 로고
    • Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs
    • Saunders, C. T. et al. Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 28, 1811-1817 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1811-1817
    • Saunders, C.T.1
  • 67
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren, W. et al. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26, 2069-2070 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1
  • 68
    • 78049248432 scopus 로고    scopus 로고
    • Allele-specific copy number analysis of tumors
    • Van Loo, P. et al. Allele-specific copy number analysis of tumors. Proc. Natl. Acad. Sci. USA 107, 16910-16915 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 16910-16915
    • Van Loo, P.1
  • 69
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 70
    • 84885008220 scopus 로고    scopus 로고
    • Pan-cancer patterns of somatic copy number alteration
    • Zack, T. I. et al. Pan-cancer patterns of somatic copy number alteration. Nat. Genet. 45, 1134-1140 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1134-1140
    • Zack, T.I.1
  • 71
    • 84856561659 scopus 로고    scopus 로고
    • Control-FREEC: A tool for assessing copy number and allelic content using next-generation sequencing data
    • Boeva, V. et al. Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. Bioinformatics 28, 423-425 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 423-425
    • Boeva, V.1
  • 72
    • 84966658505 scopus 로고    scopus 로고
    • Manta: Rapid detection of structural variants and indels for germline and cancer sequencing applications
    • Chen, X. et al. Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics 32, 1220-1222 (2016).
    • (2016) Bioinformatics , vol.32 , pp. 1220-1222
    • Chen, X.1
  • 73
    • 84871393383 scopus 로고    scopus 로고
    • Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes
    • Schulte, I. et al. Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes. BMC Genomics 13, 719 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 719
    • Schulte, I.1
  • 74
    • 84881615685 scopus 로고    scopus 로고
    • Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes
    • Le Tallec, B. et al. Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes. Cell Reports 4, 420-428 (2013).
    • (2013) Cell Reports , vol.4 , pp. 420-428
    • Le Tallec, B.1
  • 75
    • 84943171338 scopus 로고    scopus 로고
    • A global reference for human genetic variation
    • Auton, A. et al. A global reference for human genetic variation. Nature 526, 68-74 (2015).
    • (2015) Nature , vol.526 , pp. 68-74
    • Auton, A.1
  • 76
    • 77954182362 scopus 로고    scopus 로고
    • ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking
    • Wilkerson, M. D. & Hayes, D. N. ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking. Bioinformatics 26, 1572-1573 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 1572-1573
    • Wilkerson, M.D.1    Hayes, D.N.2
  • 77
    • 84873813238 scopus 로고    scopus 로고
    • Copynumber: Efficient algorithms for single-and multi-track copy number segmentation
    • Nilsen, G. et al. Copynumber: efficient algorithms for single-and multi-track copy number segmentation. BMC Genomics 13, 591 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 591
    • Nilsen, G.1
  • 78
    • 84875135862 scopus 로고    scopus 로고
    • Criteria for inference of chromothripsis in cancer genomes
    • Korbel, J. O. & Campbell, P. J. Criteria for inference of chromothripsis in cancer genomes. Cell 152, 1226-1236 (2013).
    • (2013) Cell , vol.152 , pp. 1226-1236
    • Korbel, J.O.1    Campbell, P.J.2
  • 79
    • 84945248976 scopus 로고    scopus 로고
    • Non-coding recurrent mutations in chronic lymphocytic leukaemia
    • Puente, X. S. et al. Non-coding recurrent mutations in chronic lymphocytic leukaemia. Nature 526, 519-524 (2015).
    • (2015) Nature , vol.526 , pp. 519-524
    • Puente, X.S.1
  • 80
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar, P., Henikoff, S. & Ng, P. C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073-1081 (2009).
    • (2009) Nat. Protoc. , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 81
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei, I. A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 82
    • 48449106045 scopus 로고    scopus 로고
    • NetMHC-3. 0: Accurate web accessible predictions of human, mouse and monkey MHC class i affinities for peptides of length 8-11
    • Lundegaard, C. et al. NetMHC-3. 0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res. 36, W509-W512 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. W509-W512
    • Lundegaard, C.1
  • 83
    • 84879692466 scopus 로고    scopus 로고
    • Comparative analysis of RNA sequencing methods for degraded or low-input samples
    • Adiconis, X. et al. Comparative analysis of RNA sequencing methods for degraded or low-input samples. Nat. Methods 10, 623-629 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 623-629
    • Adiconis, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.