메뉴 건너뛰기




Volumn 15, Issue 4, 2016, Pages 673-685

Characterization of the direct targets of FOXO transcription factors throughout evolution

Author keywords

ChIP seq; DAF 16; evolutionary conservation; FOXO; transcriptional networks

Indexed keywords

CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; TRANSCRIPTION FACTOR ETS; TRANSCRIPTION FACTOR FOXO;

EID: 84977661168     PISSN: 14749718     EISSN: 14749726     Source Type: Journal    
DOI: 10.1111/acel.12479     Document Type: Article
Times cited : (146)

References (74)
  • 3
    • 84888225099 scopus 로고    scopus 로고
    • Activin signaling targeted by insulin/dFOXO regulates aging and muscle proteostasis in Drosophila
    • Bai H, Kang P, Hernandez AM, Tatar M (2013) Activin signaling targeted by insulin/dFOXO regulates aging and muscle proteostasis in Drosophila. PLoS Genet. 9, e1003941.
    • (2013) PLoS Genet. , vol.9
    • Bai, H.1    Kang, P.2    Hernandez, A.M.3    Tatar, M.4
  • 4
    • 37349025432 scopus 로고    scopus 로고
    • FOXO3a is activated in response to hypoxic stress and inhibits HIF1-induced apoptosis via regulation of CITED2
    • Bakker WJ, Harris IS, Mak TW (2007) FOXO3a is activated in response to hypoxic stress and inhibits HIF1-induced apoptosis via regulation of CITED2. Mol. Cell 28, 941–953.
    • (2007) Mol. Cell , vol.28 , pp. 941-953
    • Bakker, W.J.1    Harris, I.S.2    Mak, T.W.3
  • 5
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. 57, 289–300.
    • (1995) J. Roy. Stat. Soc. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 0035019007 scopus 로고    scopus 로고
    • Identification and characterization of members of the FKHR (FOX O) subclass of winged-helix transcription factors in the mouse
    • Biggs WH 3rd, Cavenee WK, Arden KC (2001) Identification and characterization of members of the FKHR (FOX O) subclass of winged-helix transcription factors in the mouse. Mamm. Genome 12, 416–425.
    • (2001) Mamm. Genome , vol.12 , pp. 416-425
    • Biggs, W.H.1    Cavenee, W.K.2    Arden, K.C.3
  • 7
    • 0037942739 scopus 로고    scopus 로고
    • Extended longevity in mice lacking the insulin receptor in adipose tissue
    • Bluher M, Kahn BB, Kahn CR (2003) Extended longevity in mice lacking the insulin receptor in adipose tissue. Science 299, 572–574.
    • (2003) Science , vol.299 , pp. 572-574
    • Bluher, M.1    Kahn, B.B.2    Kahn, C.R.3
  • 8
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling R, Armengaud P, Amtmann A, Herzyk P (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett. 573, 83–92.
    • (2004) FEBS Lett. , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 9
    • 74049097590 scopus 로고    scopus 로고
    • Kruppel-like family of transcription factors: an emerging new frontier in fat biology
    • Brey CW, Nelder MP, Hailemariam T, Gaugler R, Hashmi S (2009) Kruppel-like family of transcription factors: an emerging new frontier in fat biology. Int. J. Biol. Sci. 5, 622–636.
    • (2009) Int. J. Biol. Sci. , vol.5 , pp. 622-636
    • Brey, C.W.1    Nelder, M.P.2    Hailemariam, T.3    Gaugler, R.4    Hashmi, S.5
  • 12
    • 45749107163 scopus 로고    scopus 로고
    • A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway
    • de Candia P, Blekhman R, Chabot AE, Oshlack A, Gilad Y (2008) A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway. PLoS ONE 3, e1670.
    • (2008) PLoS ONE , vol.3
    • de Candia, P.1    Blekhman, R.2    Chabot, A.E.3    Oshlack, A.4    Gilad, Y.5
  • 13
    • 84900017249 scopus 로고    scopus 로고
    • A Kruppel-like factor downstream of the E3 ligase WWP-1 mediates dietary-restriction-induced longevity in Caenorhabditis elegans
    • Carrano AC, Dillin A, Hunter T (2014) A Kruppel-like factor downstream of the E3 ligase WWP-1 mediates dietary-restriction-induced longevity in Caenorhabditis elegans. Nat. Commun. 5, 3772.
    • (2014) Nat. Commun. , vol.5 , pp. 3772
    • Carrano, A.C.1    Dillin, A.2    Hunter, T.3
  • 16
    • 84924980022 scopus 로고    scopus 로고
    • Caenorhabditis elegans OSM-11 signaling regulates SKN-1/Nrf during embryonic development and adult longevity and stress response
    • Dresen A, Finkbeiner S, Dottermusch M, Beume JS, Li Y, Walz G, Neumann-Haefelin E (2015) Caenorhabditis elegans OSM-11 signaling regulates SKN-1/Nrf during embryonic development and adult longevity and stress response. Dev. Biol. 400, 118–131.
    • (2015) Dev. Biol. , vol.400 , pp. 118-131
    • Dresen, A.1    Finkbeiner, S.2    Dottermusch, M.3    Beume, J.S.4    Li, Y.5    Walz, G.6    Neumann-Haefelin, E.7
  • 17
    • 84891034171 scopus 로고    scopus 로고
    • FOXO3 selectively amplifies enhancer activity to establish target gene regulation
    • Eijkelenboom A, Mokry M, Smits LM, Nieuwenhuis EE, Burgering BM (2013) FOXO3 selectively amplifies enhancer activity to establish target gene regulation. Cell Rep. 5, 1664–1678.
    • (2013) Cell Rep. , vol.5 , pp. 1664-1678
    • Eijkelenboom, A.1    Mokry, M.2    Smits, L.M.3    Nieuwenhuis, E.E.4    Burgering, B.M.5
  • 18
    • 84925488579 scopus 로고    scopus 로고
    • Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity
    • Ewald CY, Landis JN, Porter Abate J, Murphy CT, Blackwell TK (2015) Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity. Nature 519, 97–101.
    • (2015) Nature , vol.519 , pp. 97-101
    • Ewald, C.Y.1    Landis, J.N.2    Porter Abate, J.3    Murphy, C.T.4    Blackwell, T.K.5
  • 21
    • 0034661826 scopus 로고    scopus 로고
    • Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues
    • Furuyama T, Nakazawa T, Nakano I, Mori N (2000) Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues. Biochem. J. 349, 629–634.
    • (2000) Biochem. J. , vol.349 , pp. 629-634
    • Furuyama, T.1    Nakazawa, T.2    Nakano, I.3    Mori, N.4
  • 22
    • 84898023111 scopus 로고    scopus 로고
    • FOXO3 promotes quiescence in adult muscle stem cells during the process of self-renewal
    • Gopinath SD, Webb AE, Brunet A, Rando TA (2014) FOXO3 promotes quiescence in adult muscle stem cells during the process of self-renewal. Stem Cell Rep. 2, 414–426.
    • (2014) Stem Cell Rep. , vol.2 , pp. 414-426
    • Gopinath, S.D.1    Webb, A.E.2    Brunet, A.3    Rando, T.A.4
  • 24
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576–589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 27
    • 84872527628 scopus 로고    scopus 로고
    • mTOR is a key modulator of ageing and age-related disease
    • Johnson SC, Rabinovitch PS, Kaeberlein M (2013) mTOR is a key modulator of ageing and age-related disease. Nature 493, 338–345.
    • (2013) Nature , vol.493 , pp. 338-345
    • Johnson, S.C.1    Rabinovitch, P.S.2    Kaeberlein, M.3
  • 28
    • 77952923018 scopus 로고    scopus 로고
    • Insulin signaling and dietary restriction differentially influence the decline of learning and memory with age
    • Kauffman AL, Ashraf JM, Corces-Zimmerman MR, Landis JN, Murphy CT (2010) Insulin signaling and dietary restriction differentially influence the decline of learning and memory with age. PLoS Biol. 8, e1000372.
    • (2010) PLoS Biol. , vol.8
    • Kauffman, A.L.1    Ashraf, J.M.2    Corces-Zimmerman, M.R.3    Landis, J.N.4    Murphy, C.T.5
  • 29
    • 77950200010 scopus 로고    scopus 로고
    • The genetics of ageing
    • Kenyon CJ (2010) The genetics of ageing. Nature 464, 504–512.
    • (2010) Nature , vol.464 , pp. 504-512
    • Kenyon, C.J.1
  • 30
    • 0027771804 scopus 로고
    • A C. elegans mutant that lives twice as long as wild type
    • Kenyon C, Chang J, Gensch E, Rudner A, Tabtiang R (1993) A C. elegans mutant that lives twice as long as wild type. Nature 366, 461–464.
    • (1993) Nature , vol.366 , pp. 461-464
    • Kenyon, C.1    Chang, J.2    Gensch, E.3    Rudner, A.4    Tabtiang, R.5
  • 31
    • 84882735072 scopus 로고    scopus 로고
    • The transcription factor Foxo1 controls central-memory CD8 +  T cell responses to infection
    • Kim MV, Ouyang W, Liao W, Zhang MQ, Li MO (2013) The transcription factor Foxo1 controls central-memory CD8 +  T cell responses to infection. Immunity 39, 286–297.
    • (2013) Immunity , vol.39 , pp. 286-297
    • Kim, M.V.1    Ouyang, W.2    Liao, W.3    Zhang, M.Q.4    Li, M.O.5
  • 33
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 34
    • 0030657540 scopus 로고    scopus 로고
    • daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegans
    • Lin K, Dorman JB, Rodan A, Kenyon C (1997) daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegans. Science 278, 1319–1322.
    • (1997) Science , vol.278 , pp. 1319-1322
    • Lin, K.1    Dorman, J.B.2    Rodan, A.3    Kenyon, C.4
  • 36
    • 84918778306 scopus 로고    scopus 로고
    • Aging and dyslipidemia: a review of potential mechanisms
    • Liu HH, Li JJ (2015) Aging and dyslipidemia: a review of potential mechanisms. Ageing Res. Rev. 19, 43–52.
    • (2015) Ageing Res. Rev. , vol.19 , pp. 43-52
    • Liu, H.H.1    Li, J.J.2
  • 40
    • 34548349302 scopus 로고    scopus 로고
    • Impaired regulation of hepatic glucose production in mice lacking the forkhead transcription factor Foxo1 in liver
    • Matsumoto M, Pocai A, Rossetti L, Depinho RA, Accili D (2007) Impaired regulation of hepatic glucose production in mice lacking the forkhead transcription factor Foxo1 in liver. Cell Metab. 6, 208–216.
    • (2007) Cell Metab. , vol.6 , pp. 208-216
    • Matsumoto, M.1    Pocai, A.2    Rossetti, L.3    Depinho, R.A.4    Accili, D.5
  • 42
    • 0034643331 scopus 로고    scopus 로고
    • AFX-like Forkhead transcription factors mediate cell-cycle regulation by Ras and PKB through p27kip1
    • Medema RH, Kops GJ, Bos JL, Burgering BM (2000) AFX-like Forkhead transcription factors mediate cell-cycle regulation by Ras and PKB through p27kip1. Nature 404, 782–787.
    • (2000) Nature , vol.404 , pp. 782-787
    • Medema, R.H.1    Kops, G.J.2    Bos, J.L.3    Burgering, B.M.4
  • 43
    • 84874969184 scopus 로고    scopus 로고
    • PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
    • Mi H, Muruganujan A, Thomas PD (2013) PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res. 41, D377–D386.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D377-D386
    • Mi, H.1    Muruganujan, A.2    Thomas, P.D.3
  • 48
    • 0030659557 scopus 로고    scopus 로고
    • The Fork head transcription factor DAF-16 transduces insulin-like metabolic and longevity signals in C. elegans
    • Ogg S, Paradis S, Gottlieb S, Patterson GI, Lee L, Tissenbaum HA, Ruvkun G (1997) The Fork head transcription factor DAF-16 transduces insulin-like metabolic and longevity signals in C. elegans. Nature 389, 994–999.
    • (1997) Nature , vol.389 , pp. 994-999
    • Ogg, S.1    Paradis, S.2    Gottlieb, S.3    Patterson, G.I.4    Lee, L.5    Tissenbaum, H.A.6    Ruvkun, G.7
  • 49
    • 31744438846 scopus 로고    scopus 로고
    • Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation
    • Oh SW, Mukhopadhyay A, Dixit BL, Raha T, Green MR, Tissenbaum HA (2006) Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation. Nat. Genet. 38, 251–257.
    • (2006) Nat. Genet. , vol.38 , pp. 251-257
    • Oh, S.W.1    Mukhopadhyay, A.2    Dixit, B.L.3    Raha, T.4    Green, M.R.5    Tissenbaum, H.A.6
  • 56
    • 41549135942 scopus 로고    scopus 로고
    • FoxO transcription factors in the maintenance of cellular homeostasis during aging
    • Salih DA, Brunet A (2008) FoxO transcription factors in the maintenance of cellular homeostasis during aging. Curr. Opin. Cell Biol. 20, 126–136.
    • (2008) Curr. Opin. Cell Biol. , vol.20 , pp. 126-136
    • Salih, D.A.1    Brunet, A.2
  • 57
    • 0037036115 scopus 로고    scopus 로고
    • Nuclear activators and coactivators in mammalian mitochondrial biogenesis
    • Scarpulla RC (2002) Nuclear activators and coactivators in mammalian mitochondrial biogenesis. Biochim. Biophys. Acta 1576, 1–14.
    • (2002) Biochim. Biophys. Acta , vol.1576 , pp. 1-14
    • Scarpulla, R.C.1
  • 59
    • 84899493057 scopus 로고    scopus 로고
    • ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
    • Shen L, Shao N, Liu X, Nestler E (2014) ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genom. 15, 284.
    • (2014) BMC Genom. , vol.15 , pp. 284
    • Shen, L.1    Shao, N.2    Liu, X.3    Nestler, E.4
  • 63
    • 0035815445 scopus 로고    scopus 로고
    • A mutant Drosophila insulin receptor homolog that extends life-span and impairs neuroendocrine function
    • Tatar M, Kopelman A, Epstein D, Tu MP, Yin CM, Garofalo RS (2001) A mutant Drosophila insulin receptor homolog that extends life-span and impairs neuroendocrine function. Science 292, 107–110.
    • (2001) Science , vol.292 , pp. 107-110
    • Tatar, M.1    Kopelman, A.2    Epstein, D.3    Tu, M.P.4    Yin, C.M.5    Garofalo, R.S.6
  • 64
    • 84881175076 scopus 로고    scopus 로고
    • PQM-1 complements DAF-16 as a key transcriptional regulator of DAF-2-mediated development and longevity
    • Tepper RG, Ashraf J, Kaletsky R, Kleemann G, Murphy CT, Bussemaker HJ (2013) PQM-1 complements DAF-16 as a key transcriptional regulator of DAF-2-mediated development and longevity. Cell 154, 676–690.
    • (2013) Cell , vol.154 , pp. 676-690
    • Tepper, R.G.1    Ashraf, J.2    Kaletsky, R.3    Kleemann, G.4    Murphy, C.T.5    Bussemaker, H.J.6
  • 68
    • 84897414264 scopus 로고    scopus 로고
    • FOXO transcription factors: key regulators of cellular quality control
    • Webb AE, Brunet A (2014) FOXO transcription factors: key regulators of cellular quality control. Trends Biochem. Sci. 39, 159–169.
    • (2014) Trends Biochem. Sci. , vol.39 , pp. 159-169
    • Webb, A.E.1    Brunet, A.2
  • 70
    • 84916917545 scopus 로고    scopus 로고
    • E2F transcription factor 1 regulates cellular and organismal senescence by inhibiting Forkhead box O transcription factors
    • Xie Q, Peng S, Tao L, Ruan H, Yang Y, Li TM, Adams U, Meng S, Bi X, Dong MQ, Yuan Z (2014) E2F transcription factor 1 regulates cellular and organismal senescence by inhibiting Forkhead box O transcription factors. J. Biol. Chem. 289, 34205–34213.
    • (2014) J. Biol. Chem. , vol.289 , pp. 34205-34213
    • Xie, Q.1    Peng, S.2    Tao, L.3    Ruan, H.4    Yang, Y.5    Li, T.M.6    Adams, U.7    Meng, S.8    Bi, X.9    Dong, M.Q.10    Yuan, Z.11
  • 72
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: establishing competence for gene expression
    • Zaret KS, Carroll JS (2011) Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 25, 2227–2241.
    • (2011) Genes Dev. , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 74
    • 84872143888 scopus 로고    scopus 로고
    • Direct and indirect gene regulation by a life-extending FOXO protein in C. elegans: roles for GATA factors and lipid gene regulators
    • Zhang P, Judy M, Lee SJ, Kenyon C (2013) Direct and indirect gene regulation by a life-extending FOXO protein in C. elegans: roles for GATA factors and lipid gene regulators. Cell Metab. 17, 85–100.
    • (2013) Cell Metab. , vol.17 , pp. 85-100
    • Zhang, P.1    Judy, M.2    Lee, S.J.3    Kenyon, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.