-
1
-
-
0034656221
-
Invasion of a multitude of genetic niches by mobile endonuclease genes
-
PMID: 10754232
-
Gimble FS. Invasion of a multitude of genetic niches by mobile endonuclease genes. FEMS Microbiol Lett. 2000; 185: 99-107. PMID: 10754232
-
(2000)
FEMS Microbiol Lett
, vol.185
, pp. 99-107
-
-
Gimble, F.S.1
-
2
-
-
84655177221
-
Introns, Mobile Elements, and Plasmids
-
Bullerwell CE, editor. Springer Berlin Heidelberg
-
Hausner G. Introns, Mobile Elements, and Plasmids. In: Bullerwell CE, editor. Organelle Genetics. Springer Berlin Heidelberg; 2012. p. 329-357.
-
(2012)
Organelle Genetics
, pp. 329-357
-
-
Hausner, G.1
-
3
-
-
0033806414
-
Barriers to intron promiscuity in bacteria
-
PMID: 10986228
-
Edgell DR, Belfort M, Shub DA. Barriers to intron promiscuity in bacteria. J Bacteriol. 2000; 182: 5281-5289. PMID: 10986228
-
(2000)
J Bacteriol
, vol.182
, pp. 5281-5289
-
-
Edgell, D.R.1
Belfort, M.2
Shub, D.A.3
-
4
-
-
0036849042
-
Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns
-
PMID: 12458791
-
Toor N, Zimmerly S. Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns. RNA. 2002; 8: 1373-1377. PMID: 12458791
-
(2002)
RNA
, vol.8
, pp. 1373-1377
-
-
Toor, N.1
Zimmerly, S.2
-
5
-
-
0024446859
-
Group I introns as mobile genetic elements: Facts and mechanistic speculations - A review
-
PMID: 2555264
-
Dujon B. Group I introns as mobile genetic elements: facts and mechanistic speculations - a review. Gene. 1989; 82: 91-114. PMID: 2555264
-
(1989)
Gene
, vol.82
, pp. 91-114
-
-
Dujon, B.1
-
6
-
-
0029616336
-
Mechanisms of intron mobility
-
PMID: 8530436
-
Belfort M, Perlman PS. Mechanisms of intron mobility. J Biol Chem. 1995; 270: 30237-30240. PMID: 8530436
-
(1995)
J Biol Chem
, vol.270
, pp. 30237-30240
-
-
Belfort, M.1
Perlman, P.S.2
-
7
-
-
0029831039
-
Exon coconversion biases accompanying intron homing: Battle of the nucleases
-
PMID: 8804310
-
Mueller JE, Smith D, Belfort M. Exon coconversion biases accompanying intron homing: battle of the nucleases. Genes Dev. 1996; 10: 2158-2166. PMID: 8804310
-
(1996)
Genes Dev
, vol.10
, pp. 2158-2166
-
-
Mueller, J.E.1
Smith, D.2
Belfort, M.3
-
8
-
-
33644756595
-
Homing endonuclease structure and function
-
Stoddard BL. Homing endonuclease structure and function. Q Rev Biophys. 2006; 38: 49-95.
-
(2006)
Q Rev Biophys
, vol.38
, pp. 49-95
-
-
Stoddard, B.L.1
-
9
-
-
0030729344
-
Statistical modeling and analysis of the LAGLIDADG family of site specific endonucleases and identification of an intein that encodes a site-specific endonucleases of the H-N-H family
-
PMID: 9358175
-
Dalgard JZ, Klar AJ, Moser MJ, Holley WR, Chatterjee A, Mian IS. Statistical modeling and analysis of the LAGLIDADG family of site specific endonucleases and identification of an intein that encodes a site-specific endonucleases of the H-N-H family. Nucleic Acids Res. 1997; 25: 4626-4638. PMID: 9358175
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4626-4638
-
-
Dalgard, J.Z.1
Klar, A.J.2
Moser, M.J.3
Holley, W.R.4
Chatterjee, A.5
Mian, I.S.6
-
10
-
-
3042568753
-
The spread of LAGLIDADG homing endonuclease genes in rDNA
-
PMID: 15069127
-
Haugen P, Bhattacharya D. The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucleic Acids Res. 2004; 32: 2049-2057. PMID: 15069127
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2049-2057
-
-
Haugen, P.1
Bhattacharya, D.2
-
11
-
-
79951694132
-
Meganucleases and other tools for targeted genome engineering: Perspectives and challenges for gene therapy
-
PMID: 21182466
-
Silva G, Poirot L, Galetto R, Smith J, Montoya G, Duchateau P, et al. Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy. Curr Gene Ther. 2011; 11: 11-27. PMID: 21182466
-
(2011)
Curr Gene Ther
, vol.11
, pp. 11-27
-
-
Silva, G.1
Poirot, L.2
Galetto, R.3
Smith, J.4
Montoya, G.5
Duchateau, P.6
-
12
-
-
72749124013
-
Heritable targeted mutagenesis in maize using a designed endonuclease
-
PMID: 19811621
-
Gao H, Smith J, Yang M, Jones S, Djukanovic V, Nicholson MG, et al. Heritable targeted mutagenesis in maize using a designed endonuclease. Plant J. 2010; 61: 176-187. doi: 10.1111/j.1365-313X.2009.04041.x PMID: 19811621
-
(2010)
Plant J
, vol.61
, pp. 176-187
-
-
Gao, H.1
Smith, J.2
Yang, M.3
Jones, S.4
Djukanovic, V.5
Nicholson, M.G.6
-
13
-
-
55749111397
-
The population genetics of using homing endonuclease genes in vector and pest management
-
PMID: 18660532
-
Deredec A, Burt A, Godfray HC. The population genetics of using homing endonuclease genes in vector and pest management. Genetics. 2008; 179: 2013-2026. doi: 10.1534/genetics.108.089037 PMID: 18660532
-
(2008)
Genetics
, vol.179
, pp. 2013-2026
-
-
Deredec, A.1
Burt, A.2
Godfray, H.C.3
-
14
-
-
34848885878
-
Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embros
-
PMID: 17726053
-
Windbichler DA, Papathanos PA, Catteruccia F, Ranson H, Burt A, Crisanti A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embros. Nucleic Acids Res. 2007; 35: 5922-5933. PMID: 17726053
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5922-5933
-
-
Windbichler, D.A.1
Papathanos, P.A.2
Catteruccia, F.3
Ranson, H.4
Burt, A.5
Crisanti, A.6
-
15
-
-
79955939676
-
Insect population control by homing endonuclease-base gene drive: An evaluation in Drosophila melanogaster
-
PMID: 21368273
-
Chan YS, Naujoks DA, Huen DS, Russell S. Insect population control by homing endonuclease-base gene drive: an evaluation in Drosophila melanogaster. Genetics, 2011; 188: 33-44. doi: 10.1534/genetics.111.127506 PMID: 21368273
-
(2011)
Genetics
, vol.188
, pp. 33-44
-
-
Chan, Y.S.1
Naujoks, D.A.2
Huen, D.S.3
Russell, S.4
-
16
-
-
67149105856
-
Murine leukemias with retroviral insertions at Lmo2 are predictive of the leukemias induced in SCID-X1 patients following retroviral gene therapy
-
PMID: 19461887
-
Davé UP, Akagi K. Tripathi R, Cleveland SM, Thompson MA, Yi M, et al. Murine leukemias with retroviral insertions at Lmo2 are predictive of the leukemias induced in SCID-X1 patients following retroviral gene therapy. PLoS Genet. 2009; 5: e1000491. doi: 10.1371/journal.pgen.1000491 PMID: 19461887
-
(2009)
PLoS Genet
, vol.5
-
-
Davé, U.P.1
Akagi, K.2
Tripathi, R.3
Cleveland, S.M.4
Thompson, M.A.5
Yi, M.6
-
17
-
-
70349407359
-
Efficient targeting of a SCID gene by an engineered single chain homing endonuclease
-
Grizot S, Smith J, Daboussi F, Prieto J, Rendondo P, Merino N, et al. Efficient targeting of a SCID gene by an engineered single chain homing endonuclease. Nucleic Acids Res. 2009; 38: 2006-2018.
-
(2009)
Nucleic Acids Res
, vol.38
, pp. 2006-2018
-
-
Grizot, S.1
Smith, J.2
Daboussi, F.3
Prieto, J.4
Rendondo, P.5
Merino, N.6
-
18
-
-
80051964399
-
Tapping natural reservoirs of homing endonucleases for targeted gene modification
-
PMID: 21784983
-
Takeuchi R, Lambert AR, Mak AN, Jacoby K. Tapping natural reservoirs of homing endonucleases for targeted gene modification. Proc Natl Acad Sci USA. 2011; 108: 13077-13082. doi: 10.1073/pnas.1107719108 PMID: 21784983
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 13077-13082
-
-
Takeuchi, R.1
Lambert, A.R.2
Mak, A.N.3
Jacoby, K.4
-
19
-
-
0037133235
-
Insertion of reversible redox switch into a rare cutting DNA endonuclease
-
PMID: 11841209
-
Posey KL, Gimble FS. Insertion of reversible redox switch into a rare cutting DNA endonuclease. Biochemistry. 2002; 41; 2184-2190. PMID: 11841209
-
(2002)
Biochemistry
, vol.41
, pp. 2184-2190
-
-
Posey, K.L.1
Gimble, F.S.2
-
20
-
-
17744402915
-
Temperature-sensitive mutants of the EcoRI endonuclease
-
PMID: 9405154
-
Muir RS, Flores H, Zinder ND, Model P, Soberon X, Heitman J. Temperature-sensitive mutants of the EcoRI endonuclease. J Mol Biol 1997; 274: 722-737. PMID: 9405154
-
(1997)
J Mol Biol
, vol.274
, pp. 722-737
-
-
Muir, R.S.1
Flores, H.2
Zinder, N.D.3
Model, P.4
Soberon, X.5
Heitman, J.6
-
21
-
-
84875588195
-
The mtDNA rns gene landscape in Ophiostomatales and other fungal taxa: Twintrons, introns and intron encoded proteins
-
PMID: 23403360
-
Hafez M, Majer A, Sethuraman J, Rudski SM, Michel F, Hausner G. The mtDNA rns gene landscape in Ophiostomatales and other fungal taxa: Twintrons, introns and intron encoded proteins. Fungal Genet Biol. 2013; 53: 71-83. doi: 10.1016/j.fgb.2013.01.005 PMID: 23403360
-
(2013)
Fungal Genet Biol
, vol.53
, pp. 71-83
-
-
Hafez, M.1
Majer, A.2
Sethuraman, J.3
Rudski, S.M.4
Michel, F.5
Hausner, G.6
-
22
-
-
84896134700
-
A homing endonuclease with a switch: Characterization of a twintron encoded homing endonuclease
-
PMID: 24508098
-
Guha TK, Hausner G. A homing endonuclease with a switch: Characterization of a twintron encoded homing endonuclease. Fungal Genet Biol. 2014; 65: 57-68. doi: 10.1016/j.fgb.2014.01.004 PMID: 24508098
-
(2014)
Fungal Genet Biol
, vol.65
, pp. 57-68
-
-
Guha, T.K.1
Hausner, G.2
-
23
-
-
4344656805
-
Mobile group II introns
-
PMID: 15568970
-
Lambowitz AM, Zimmerly S. Mobile group II introns. Annu Rev Genet. 2004; 38: 1-35. PMID: 15568970
-
(2004)
Annu Rev Genet
, vol.38
, pp. 1-35
-
-
Lambowitz, A.M.1
Zimmerly, S.2
-
24
-
-
34250631912
-
Group II introns: Structure, folding and splicing mechanism
-
Review PMID: 17570818
-
Olga F, Nora Z. Group II introns: structure, folding and splicing mechanism (Review). Biol Chem. 2007; 388: 665-678. PMID: 17570818
-
(2007)
Biol Chem
, vol.388
, pp. 665-678
-
-
Olga, F.1
Nora, Z.2
-
25
-
-
63549105637
-
The ribozyme core of group II introns: A structure in want of partners
-
Review PMID: 19299141
-
Michel F, Costa M, Westhof E. The ribozyme core of group II introns: a structure in want of partners (Review). Trends Biochem Sci. 2009; 34: 189-199. doi: 10.1016/j.tibs.2008.12.007 PMID: 19299141
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 189-199
-
-
Michel, F.1
Costa, M.2
Westhof, E.3
-
26
-
-
84863874209
-
Group II introns: Mobile ribozymes that invade DNA
-
PMID: 20463000
-
Lambowitz AM, Zimmerly S. Group II introns: Mobile ribozymes that invade DNA. Cold Spring Harb Perspect Biol. 2011; 3: a003616. doi: 10.1101/cshperspect.a003616 PMID: 20463000
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
-
-
Lambowitz, A.M.1
Zimmerly, S.2
-
27
-
-
0034810056
-
Metal ion coordination by the AGC triad in domain 5 contributes to group II intron catalysis
-
Gordon PM, Piccirilli JA. Metal ion coordination by the AGC triad in domain 5 contributes to group II intron catalysis. Nature Struct Biol. 2002; 8: 893-898.
-
(2002)
Nature Struct Biol
, vol.8
, pp. 893-898
-
-
Gordon, P.M.1
Piccirilli, J.A.2
-
28
-
-
34250349882
-
A second divalent metal ion in the group II intron reaction center
-
PMID: 17584608
-
Gordon PM, Fong R, Piccirilli JA. A second divalent metal ion in the group II intron reaction center. Chem Biol. 2007; 14: 607-612. PMID: 17584608
-
(2007)
Chem Biol
, vol.14
, pp. 607-612
-
-
Gordon, P.M.1
Fong, R.2
Piccirilli, J.A.3
-
29
-
-
27844569938
-
Group II introns: Ribozymes that splice RNA and invade DNA
-
3rd ed
-
Pyle AM, Lambowitz AM. Group II introns: ribozymes that splice RNA and invade DNA. In: The RNA world ( 3rd ed). 2006. pp. 469-505.
-
(2006)
The RNA World
, pp. 469-505
-
-
Pyle, A.M.1
Lambowitz, A.M.2
-
30
-
-
0037086011
-
Structural insights into group II intron catalysis and branch-site selection
-
PMID: 11859154
-
Zhang L, Doudna JA. Structural insights into group II intron catalysis and branch-site selection. Science. 2002; 295: 2084-2088. PMID: 11859154
-
(2002)
Science
, vol.295
, pp. 2084-2088
-
-
Zhang, L.1
Doudna, J.A.2
-
31
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
PMID: 18388288
-
Toor N, Keating KS, Taylor SD, Pyle AM. Crystal structure of a self-spliced group II intron. Science. 2008; 320:77-82. doi: 10.1126/science.1153803 PMID: 18388288
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
32
-
-
84928892707
-
Evolution of group II introns
-
PMID: 25960782
-
Zimmerly S, Semper C. Evolution of group II introns. Mob DNA. 2015; 6:7. doi: 10.1186/s13100-015-0037-5 PMID: 25960782
-
(2015)
Mob DNA
, vol.6
, pp. 7
-
-
Zimmerly, S.1
Semper, C.2
-
33
-
-
18744425024
-
Group II intron splicing in Escherichia coli: Phenotypes of cis-acting mutations resemble splicing defects observed in organelle RNA processing
-
PMID: 10325423
-
Hollander V, Kück U. Group II intron splicing in Escherichia coli: phenotypes of cis-acting mutations resemble splicing defects observed in organelle RNA processing. Nucleic Acids Res. 1999; 27: 2339-2344. PMID: 10325423
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2339-2344
-
-
Hollander, V.1
Kück, U.2
-
34
-
-
84865272073
-
Homing endonucleases: DNA scissors on a mission
-
PMID: 22891613
-
Hafez M, Hausner G. Homing endonucleases: DNA scissors on a mission. Genome. 2012; 55: 553-569. doi: 10.1139/g2012-049 PMID: 22891613
-
(2012)
Genome
, vol.55
, pp. 553-569
-
-
Hafez, M.1
Hausner, G.2
-
35
-
-
84896766709
-
Homing endonucleases from mobile group I introns: Discovery to genome engineering
-
PMID: 24589358
-
Stoddard BL. Homing endonucleases from mobile group I introns: discovery to genome engineering. Mob DNA. 2014; 5: 7. doi: 10.1186/1759-8753-5-7 PMID: 24589358
-
(2014)
Mob DNA
, vol.5
, pp. 7
-
-
Stoddard, B.L.1
-
36
-
-
84867221079
-
Comparative reaction engineering studies for succinic acid production from sucrose by metabolically engineered Escherichia coli in fed-batch-operated stirred tank bioreactors
-
PMID: 22588847
-
Hoefel T, Faust G, Reinecke L, Rudinger N, Weuster-Botz D. Comparative reaction engineering studies for succinic acid production from sucrose by metabolically engineered Escherichia coli in fed-batch-operated stirred tank bioreactors. Biotechnol J. 2012; 7: 1277-1287. doi: 10.1002/biot.201200046 PMID: 22588847
-
(2012)
Biotechnol J
, vol.7
, pp. 1277-1287
-
-
Hoefel, T.1
Faust, G.2
Reinecke, L.3
Rudinger, N.4
Weuster-Botz, D.5
-
37
-
-
0025373469
-
A self-splicing group II intron in the mitochondrial large subunit rRNA (LSUrRNA) gene of the eukaryotic alga Scenedesmus obliquus
-
PMID: 1692614
-
Kück U, Godehardt I, Schmidt U. A self-splicing group II intron in the mitochondrial large subunit rRNA (LSUrRNA) gene of the eukaryotic alga Scenedesmus obliquus. Nucleic Acids Res. 1990; 18: 2691-2697. PMID: 1692614
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 2691-2697
-
-
Kück, U.1
Godehardt, I.2
Schmidt, U.3
-
38
-
-
0032190211
-
Characterization of two intein homing endonucleases encoded in the DNA polymerase gene of Pyrococcus kodakaraensis strain KOD1
-
PMID: 9742242
-
Nishioka M, Fujiwara S, Takagi M, Imanaka T. Characterization of two intein homing endonucleases encoded in the DNA polymerase gene of Pyrococcus kodakaraensis strain KOD1. Nucleic Acids Res. 1998; 26: 4409-4412. PMID: 9742242
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4409-4412
-
-
Nishioka, M.1
Fujiwara, S.2
Takagi, M.3
Imanaka, T.4
-
39
-
-
68249136795
-
Characterization of intein homing endonuclease encoded in the DNA polymerase gene of Thermococcus marinus
-
PMID: 19634205
-
Bae H, Kim KP, Song JM, Yang JS, Kwon ST. Characterization of intein homing endonuclease encoded in the DNA polymerase gene of Thermococcus marinus. FEMS Microbiol Lett. 2009; 297: 180-188. PMID: 19634205
-
(2009)
FEMS Microbiol Lett
, vol.297
, pp. 180-188
-
-
Bae, H.1
Kim, K.P.2
Song, J.M.3
Yang, J.S.4
Kwon, S.T.5
-
40
-
-
0015217770
-
Magnesium transport in Escherichia coli. Inhibition by cobaltous ion
-
PMID: 4928897
-
Nelson DL, Kennedy EP. Magnesium transport in Escherichia coli. Inhibition by cobaltous ion. J Biol Chem. 1971; 246: 3042-3049. PMID: 4928897
-
(1971)
J Biol Chem
, vol.246
, pp. 3042-3049
-
-
Nelson, D.L.1
Kennedy, E.P.2
-
41
-
-
0015343320
-
Transport of magnesium by a repressible and a nonrepressible system in Escherichia coli
-
PMID: 4556454
-
Nelson DL, Kennedy EP. Transport of magnesium by a repressible and a nonrepressible system in Escherichia coli. Proc Natl Acad Sci USA. 1972; 69: 1091-1093. PMID: 4556454
-
(1972)
Proc Natl Acad Sci USA
, vol.69
, pp. 1091-1093
-
-
Nelson, D.L.1
Kennedy, E.P.2
-
42
-
-
84885065897
-
Enhanced group II intron retrohoming in magnesium-deficient E.coli via selection of mutations in the ribozyme core
-
Truong DM, Sidote DJ, Russell R, Lambowitz AM. Enhanced group II intron retrohoming in magnesium-deficient E.coli via selection of mutations in the ribozyme core. Proc Natl Acad Sci USA, 2013; 110: 3800-3809.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 3800-3809
-
-
Truong, D.M.1
Sidote, D.J.2
Russell, R.3
Lambowitz, A.M.4
-
43
-
-
84930074657
-
The Phyre2 web portal for protein modeling, prediction and analysis
-
PMID: 25950237
-
Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ. The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc. 2015; 10: 845-858. doi: 10.1038/nprot.2015.053 PMID: 25950237
-
(2015)
Nat Protoc
, vol.10
, pp. 845-858
-
-
Kelley, L.A.1
Mezulis, S.2
Yates, C.M.3
Wass, M.N.4
Sternberg, M.J.5
-
44
-
-
84892424438
-
Biotechnological applications of mobile group II introns and their reverse transcriptases: Gene targeting, RNA-seq, and non-coding RNA analysis
-
Enyeart PJ, Mohr G, Ellington AD, Lambowitz AM. Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis. Mob DNA. 2014; 5: 2l.
-
(2014)
Mob DNA
, vol.5
, pp. 2l
-
-
Enyeart, P.J.1
Mohr, G.2
Ellington, A.D.3
Lambowitz, A.M.4
-
45
-
-
0037444087
-
Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker
-
PMID: 12626707
-
Zhong J, Karberg M, Lambowitz AM. Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker. Nucleic Acids Res. 2003; 31: 1656-1664. PMID: 12626707
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1656-1664
-
-
Zhong, J.1
Karberg, M.2
Lambowitz, A.M.3
-
46
-
-
84940741423
-
Mobile bacterial group II introns at the crux of eukaryotic evolution
-
MDNA3-0050-2014
-
Lambowitz AM, Belfort M. Mobile bacterial group II introns at the crux of eukaryotic evolution. Microbiol Spectr. 2015; 3: MDNA3-0050-2014.
-
(2015)
Microbiol Spectr
, vol.3
-
-
Lambowitz, A.M.1
Belfort, M.2
-
47
-
-
84924039550
-
Evolution of RNA-protein interactions: Non-specific binding led to RNA splicing activity of fungal mitochondrial tyrosyl-tRNA synthetases
-
PMID: 25536042
-
Lamech LT, Mallam AL, Lambowitz AM. Evolution of RNA-protein interactions: non-specific binding led to RNA splicing activity of fungal mitochondrial tyrosyl-tRNA synthetases. PLoS Biol. 2014; 12; e1002028. doi: 10.1371/journal.pbio.1002028 PMID: 25536042
-
(2014)
PLoS Biol
, vol.12
-
-
Lamech, L.T.1
Mallam, A.L.2
Lambowitz, A.M.3
-
48
-
-
84908200313
-
iBrick: A new standard for iterative assembly of biological parts with homing endonucleases
-
PMID: 25329380
-
Liu JK, Chen WH, Ren SX, Zhao GP, Wang J. iBrick: a new standard for iterative assembly of biological parts with homing endonucleases. PLoS One. 2014; 9: e110852. doi: 10.1371/journal.pone.0110852 PMID: 25329380
-
(2014)
PLoS One
, vol.9
-
-
Liu, J.K.1
Chen, W.H.2
Ren, S.X.3
Zhao, G.P.4
Wang, J.5
-
49
-
-
84940758288
-
Retrohoming of a mobile group II intron in human cells suggests how eukaryotes limit group II intron proliferation
-
PMID: 26241656
-
Truong DM, Hewitt FC, Hanson JH, Cui X, Lambowitz AM. Retrohoming of a mobile group II intron in human cells suggests how eukaryotes limit group II intron proliferation. PLoS Genet. 2015; 11: e1005422. doi: 10.1371/journal.pgen.1005422 PMID: 26241656
-
(2015)
PLoS Genet
, vol.11
-
-
Truong, D.M.1
Hewitt, F.C.2
Hanson, J.H.3
Cui, X.4
Lambowitz, A.M.5
-
50
-
-
34247569016
-
Gene targeting in gram-negative bacteria by use of a mobile group II intron ("Targetron") expressed from a broad-host-range vector
-
PMID: 17322321
-
Yao J, Lambowitz AM. Gene targeting in gram-negative bacteria by use of a mobile group II intron ("Targetron") expressed from a broad-host-range vector. Appl Environ Microbiol 2007; 73: 2735-2743. PMID: 17322321
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2735-2743
-
-
Yao, J.1
Lambowitz, A.M.2
-
51
-
-
84862217072
-
Database for bacterial group II introns
-
PMID: 22080509
-
Candales MA, Duong A, Hood KS, Li T, Neufeld RA, Sun R, et al. Database for bacterial group II introns. Nucleic Acids Res (Database issue: ). 2012; 40: D187-90. doi: 10.1093/nar/gkr1043 PMID: 22080509
-
(2012)
Nucleic Acids Res (Database Issue:)
, vol.40
, pp. D187-D190
-
-
Candales, M.A.1
Duong, A.2
Hood, K.S.3
Li, T.4
Neufeld, R.A.5
Sun, R.6
-
52
-
-
84925436942
-
Magnesium uptake of Arabidopsis transporters, AtMRS2-10 and AtMRS2-11, expressed in Escherichia coli mutants: Complementation and growth inhibition by aluminum
-
PMID: 25772503
-
Ishijima S, Uda M, Hirata T, Shibata M, Kitagawa N, Sagami I. Magnesium uptake of Arabidopsis transporters, AtMRS2-10 and AtMRS2-11, expressed in Escherichia coli mutants: Complementation and growth inhibition by aluminum. Biochim Biophys Acta. 2015; 1848: 1376-1382. doi: 10.1016/j.bbamem.2015.03.005 PMID: 25772503
-
(2015)
Biochim Biophys Acta
, vol.1848
, pp. 1376-1382
-
-
Ishijima, S.1
Uda, M.2
Hirata, T.3
Shibata, M.4
Kitagawa, N.5
Sagami, I.6
-
53
-
-
84890672274
-
2+-induced conformational changes in the btuB riboswitch from E. coli
-
PMID: 24243114
-
2+-induced conformational changes in the btuB riboswitch from E. coli. RNA. 2014; 20: 36-45. doi: 10.1261/rna.039909.113 PMID: 24243114
-
(2014)
RNA
, vol.20
, pp. 36-45
-
-
Choudhary, P.K.1
Sigel, R.K.2
-
54
-
-
84876357338
-
The structural stabilization of the κ three-way junction by Mg (II) represents the first step in the folding of a group II intron
-
PMID: 23275550
-
Donghi D, Pechlaner M, Finazzo C, Knobloch B, Sigel RKO. The structural stabilization of the κ three-way junction by Mg (II) represents the first step in the folding of a group II intron. Nucleic Acids Res. 2013; 41: 2489-2504. doi: 10.1093/nar/gks1179 PMID: 23275550
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2489-2504
-
-
Donghi, D.1
Pechlaner, M.2
Finazzo, C.3
Knobloch, B.4
Sigel, R.K.O.5
-
55
-
-
21244480925
-
Group II intron ribozymes and metal ions-a delicate relationship
-
Sigel RKO. Group II intron ribozymes and metal ions-a delicate relationship. Eur J Inorg Chem. 2005; 2281-2292.
-
(2005)
Eur J Inorg Chem
, pp. 2281-2292
-
-
Sigel, R.K.O.1
-
56
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
PMID: 17379808
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science. 2007; 315: 1709-1712. PMID: 17379808
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
-
57
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
PMID: 23287718
-
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, et al. Multiplex genome engineering using CRISPR/Cas systems. Science. 2013; 339: 819-823. doi: 10.1126/science.1231143 PMID: 23287718
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
-
58
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
PMID: 23287722
-
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, et al. RNA-guided human genome engineering via Cas9. Science. 2013; 339: 823-826. doi: 10.1126/science.1232033 PMID: 23287722
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
-
59
-
-
84913568580
-
Programmable RNA recognition and cleavage by CRISPR/Cas9
-
PMID: 25274302
-
O'Connell MR, Oakes BL, Sternberg SH, East-Seletsky A, Kaplan M, Doudna JA. Programmable RNA recognition and cleavage by CRISPR/Cas9. Nature. 2014; 516: 263-266. doi: 10.1038/nature13769 PMID: 25274302
-
(2014)
Nature
, vol.516
, pp. 263-266
-
-
O'Connell, M.R.1
Oakes, B.L.2
Sternberg, S.H.3
East-Seletsky, A.4
Kaplan, M.5
Doudna, J.A.6
-
60
-
-
84929666410
-
Expanding the biologist's toolkit with CRISPR-Cas9
-
PMID: 26000842
-
Sternberg SH, Doudna JA. Expanding the biologist's toolkit with CRISPR-Cas9. Mol Cell. 2015; 58: 568-574. doi: 10.1016/j.molcel.2015.02.032 PMID: 26000842
-
(2015)
Mol Cell
, vol.58
, pp. 568-574
-
-
Sternberg, S.H.1
Doudna, J.A.2
-
61
-
-
84925441397
-
Determining the specificities of TALENs, Cas9, and other genome-editing enzymes
-
PMID: 25398335
-
Pattanayak V, Guilinger JP, Liu DR. Determining the specificities of TALENs, Cas9, and other genome-editing enzymes. Methods Enzymol. 2014; 546: 47-78. doi: 10.1016/B978-0-12-801185-0.00003-9 PMID: 25398335
-
(2014)
Methods Enzymol
, vol.546
, pp. 47-78
-
-
Pattanayak, V.1
Guilinger, J.P.2
Liu, D.R.3
-
62
-
-
84898778301
-
A guide to genome engineering with programmable nucleases
-
PMID: 24690881
-
Kim H, Kim JS. A guide to genome engineering with programmable nucleases. Nat Rev Genet. 2014; 15: 321-334. doi: 10.1038/nrg3686 PMID: 24690881
-
(2014)
Nat Rev Genet
, vol.15
, pp. 321-334
-
-
Kim, H.1
Kim, J.S.2
-
63
-
-
77949398275
-
Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS
-
PMID: 20132443
-
Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol. 2010; 75: 1495-1512. doi: 10.1111/j.1365-2958.2010.07073.x PMID: 20132443
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
64
-
-
77956621546
-
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
-
PMID: 20659289
-
Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol. Microbiol. 2010; 77: 1380-93. doi: 10.1111/j.1365-2958.2010.07315.x PMID: 20659289
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1380-1393
-
-
Westra, E.R.1
Pul, U.2
Heidrich, N.3
Jore, M.M.4
Lundgren, M.5
Stratmann, T.6
-
65
-
-
84942793975
-
Photoactivatable CRISPR-Cas9 for optogenetic genome editing
-
PMID: 26076431
-
Nihongaki Y, Kawano F, Nakajima T, Sato M. Photoactivatable CRISPR-Cas9 for optogenetic genome editing. Nat Biotechnol. 2015; 33: 755-760. doi: 10.1038/nbt.3245 PMID: 26076431
-
(2015)
Nat Biotechnol
, vol.33
, pp. 755-760
-
-
Nihongaki, Y.1
Kawano, F.2
Nakajima, T.3
Sato, M.4
-
66
-
-
84923297110
-
A split-Cas9 architecture for inducible genome editing and transcription modulation
-
PMID: 25643054
-
Zetsche B, Volz SE, Zhang F. A split-Cas9 architecture for inducible genome editing and transcription modulation. Nat Biotechnol. 2015; 33: 139-142. doi: 10.1038/nbt.3149 PMID: 25643054
-
(2015)
Nat Biotechnol
, vol.33
, pp. 139-142
-
-
Zetsche, B.1
Volz, S.E.2
Zhang, F.3
-
67
-
-
84937764361
-
Small molecule-triggered Cas9 protein with improved genome-editing specificity
-
PMID: 25848930
-
Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Small molecule-triggered Cas9 protein with improved genome-editing specificity. Nat Chem Biol. 2015; 11: 316-318. doi: 10.1038/nchembio.1793 PMID: 25848930
-
(2015)
Nat Chem Biol
, vol.11
, pp. 316-318
-
-
Davis, K.M.1
Pattanayak, V.2
Thompson, D.B.3
Zuris, J.A.4
Liu, D.R.5
-
68
-
-
37249020936
-
Cis- and trans-splicing of group II introns in plant mitochondria
-
PMID: 18006386
-
Bonen L. Cis- and trans-splicing of group II introns in plant mitochondria. Mitochondrion. 2008; 8: 26-34. PMID: 18006386
-
(2008)
Mitochondrion
, vol.8
, pp. 26-34
-
-
Bonen, L.1
-
69
-
-
31544468450
-
A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas
-
PMID: 16407333
-
Merendino L, Perron K, Rahire M, Howald I, Rochaix JD, Goldschmidt-Clermont M. A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas. Nucleic Acids Res. 2006; 34: 262-274. PMID: 16407333
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 262-274
-
-
Merendino, L.1
Perron, K.2
Rahire, M.3
Howald, I.4
Rochaix, J.D.5
Goldschmidt-Clermont, M.6
-
70
-
-
81755161585
-
Contribution of base-pairing interactions between group II intron fragments during trans-splicing in vivo
-
PMID: 22033330
-
Quiroga C, Kronstad L, Ritlop C, Filion A, Cousineau B. Contribution of base-pairing interactions between group II intron fragments during trans-splicing in vivo. RNA. 2011; 17: 2212-2221. doi: 10.1261/rna.028886.111 PMID: 22033330
-
(2011)
RNA
, vol.17
, pp. 2212-2221
-
-
Quiroga, C.1
Kronstad, L.2
Ritlop, C.3
Filion, A.4
Cousineau, B.5
-
71
-
-
84955191442
-
Use of transposase and ends of IS608 enables precise and scarless genome modification for modulating gene expression and metabolic engineering applications in Escherichia coli
-
Thakker C, Lin K, Martini-Stoica H, Bennett GN. Use of transposase and ends of IS608 enables precise and scarless genome modification for modulating gene expression and metabolic engineering applications in Escherichia coli. Biotechnol J. 2015; doi: 10.1002/biot.201500205
-
(2015)
Biotechnol J
-
-
Thakker, C.1
Lin, K.2
Martini-Stoica, H.3
Bennett, G.N.4
-
72
-
-
84937538704
-
Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing
-
PMID: 26141150
-
Li Y, Lin Z, Huang C, Zhang Y, Wang Z, Tang YJ, et al. Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing. Metab Eng. 2015; 31: 13-21. doi: 10.1016/j.ymben.2015.06.006 PMID: 26141150
-
(2015)
Metab Eng
, vol.31
, pp. 13-21
-
-
Li, Y.1
Lin, Z.2
Huang, C.3
Zhang, Y.4
Wang, Z.5
Tang, Y.J.6
-
73
-
-
84988876848
-
Expansion of the genetic toolkit for metabolic engineering of Clostridium pasteurianum: Chromosomal gene disruption of the endogenous CpaAI restriction enzyme
-
PMID: 25431621
-
Pyne ME, Moo-Young M, Chung DA, Chou CP. Expansion of the genetic toolkit for metabolic engineering of Clostridium pasteurianum: chromosomal gene disruption of the endogenous CpaAI restriction enzyme. Biotechnol Biofuels. 2014; 7: 163. doi: 10.1186/s13068-014-0163-1 PMID: 25431621
-
(2014)
Biotechnol Biofuels
, vol.7
, pp. 163
-
-
Pyne, M.E.1
Moo-Young, M.2
Chung, D.A.3
Chou, C.P.4
|