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Volumn 53, Issue , 2013, Pages 71-83

The mtDNA rns gene landscape in the Ophiostomatales and other fungal taxa: Twintrons, introns, and intron-encoded proteins

Author keywords

Group I and II introns; Homing endonucleases; MtDNA; Reverse transcriptase; RRNA

Indexed keywords

ENDONUCLEASE; FUNGAL PROTEIN; HOMING ENDONUCLEASE; INTRON ENCODED PROTEIN; MITOCHONDRIAL DNA; RIBOZYME; RNA DIRECTED DNA POLYMERASE; SMALL SUBUNIT RIBOSOMAL RNA; UNCLASSIFIED DRUG;

EID: 84875588195     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2013.01.005     Document Type: Article
Times cited : (25)

References (105)
  • 1
    • 0029018307 scopus 로고
    • Nucleotide-sequence analysis indicate that a DNA plasmid in a diseased isolate of Ophiostoma novo-ulmi is derived by recombination between two long repeat sequences in the mitochondrial large subunit ribosomal RNA gene
    • Abu-Amero S.N., Charter N.W., Buck K.W., Brasier C.M. Nucleotide-sequence analysis indicate that a DNA plasmid in a diseased isolate of Ophiostoma novo-ulmi is derived by recombination between two long repeat sequences in the mitochondrial large subunit ribosomal RNA gene. Curr. Genet. 1995, 28:54-59.
    • (1995) Curr. Genet. , vol.28 , pp. 54-59
    • Abu-Amero, S.N.1    Charter, N.W.2    Buck, K.W.3    Brasier, C.M.4
  • 3
    • 3242670633 scopus 로고    scopus 로고
    • Ribozymes in the age of molecular therapeutics
    • Bagheri S., Kashani-Sabet M. Ribozymes in the age of molecular therapeutics. Curr. Mol. Med. 2004, 4:489-506.
    • (2004) Curr. Mol. Med. , vol.4 , pp. 489-506
    • Bagheri, S.1    Kashani-Sabet, M.2
  • 4
    • 0033985778 scopus 로고    scopus 로고
    • Transmissible mitochondrial hypovirulence in a natural population of Cryphonectria parasitica
    • Baidyaroy D., Huber D.H., Fulbright D.W., Bertrand H. Transmissible mitochondrial hypovirulence in a natural population of Cryphonectria parasitica. Mol. Plant Microbe Interact. 2000, 13:88-95.
    • (2000) Mol. Plant Microbe Interact. , vol.13 , pp. 88-95
    • Baidyaroy, D.1    Huber, D.H.2    Fulbright, D.W.3    Bertrand, H.4
  • 5
    • 79959535574 scopus 로고    scopus 로고
    • Detection of a 973 bp insertion within the mtDNA rns gene in a mitochondrial hypovirulent strain of Cryphonectria parasitica isolated from nature
    • Baidyaroy D., Hausner G., Hafez M., Michel F., Fulbright D., Bertrand H. Detection of a 973 bp insertion within the mtDNA rns gene in a mitochondrial hypovirulent strain of Cryphonectria parasitica isolated from nature. Fungal Genet. Biol. 2011, 48:775-783.
    • (2011) Fungal Genet. Biol. , vol.48 , pp. 775-783
    • Baidyaroy, D.1    Hausner, G.2    Hafez, M.3    Michel, F.4    Fulbright, D.5    Bertrand, H.6
  • 6
    • 0030908744 scopus 로고    scopus 로고
    • Plasticity of the mitochondrial genome in Podospora. Polymorphism for 15 optional sequences: group-I, group-II introns, intronic ORFs and an intergenic region
    • Belcour L., Rossignol M., Koll F., Sellem C.H., Oldani C. Plasticity of the mitochondrial genome in Podospora. Polymorphism for 15 optional sequences: group-I, group-II introns, intronic ORFs and an intergenic region. Curr. Genet. 1997, 31:308-317.
    • (1997) Curr. Genet. , vol.31 , pp. 308-317
    • Belcour, L.1    Rossignol, M.2    Koll, F.3    Sellem, C.H.4    Oldani, C.5
  • 7
    • 0346123001 scopus 로고    scopus 로고
    • Two for the price of one: a bifunctional intron-encoded DNA endonuclease-RNA maturase
    • Belfort M. Two for the price of one: a bifunctional intron-encoded DNA endonuclease-RNA maturase. Genes Dev. 2003, 17:2860-2863.
    • (2003) Genes Dev. , vol.17 , pp. 2860-2863
    • Belfort, M.1
  • 8
    • 85158033913 scopus 로고    scopus 로고
    • Mobile introns: pathways and proteins
    • American Society for Microbiology Press, Washington, DC, N.L. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.)
    • Belfort M., Derbyshire V., Parker M.M., Cousineau B., Lambowitz A.M. Mobile introns: pathways and proteins. Mobile DNA II 2002, 761-783. American Society for Microbiology Press, Washington, DC. N.L. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.).
    • (2002) Mobile DNA II , pp. 761-783
    • Belfort, M.1    Derbyshire, V.2    Parker, M.M.3    Cousineau, B.4    Lambowitz, A.M.5
  • 9
    • 28744447849 scopus 로고    scopus 로고
    • Phylogenetic analysis suggests reverse splicing spread of group I introns in fungal ribosomal DNA
    • Bhattacharya D., Reeb V., Simon D.M., Lutzoni F. Phylogenetic analysis suggests reverse splicing spread of group I introns in fungal ribosomal DNA. BMC Evol. Biol. 2005, 5:68.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 68
    • Bhattacharya, D.1    Reeb, V.2    Simon, D.M.3    Lutzoni, F.4
  • 10
    • 0035368207 scopus 로고    scopus 로고
    • The ins and outs of group II introns
    • Bonen L., Vogel J. The ins and outs of group II introns. Trends Genet. 2001, 17:322-331.
    • (2001) Trends Genet. , vol.17 , pp. 322-331
    • Bonen, L.1    Vogel, J.2
  • 13
    • 33846454863 scopus 로고    scopus 로고
    • Group I introns and their maturases: uninvited, but welcome guests
    • NY, Springer, New York, M. Belfort, V. Derbyshire, B.L. Stoddard, D.L. Wood (Eds.)
    • Caprara M.G., Waring R.B. Group I introns and their maturases: uninvited, but welcome guests. Homing Endonucleases and Inteins 2005, 103-119. NY, Springer, New York. M. Belfort, V. Derbyshire, B.L. Stoddard, D.L. Wood (Eds.).
    • (2005) Homing Endonucleases and Inteins , pp. 103-119
    • Caprara, M.G.1    Waring, R.B.2
  • 14
    • 0028441183 scopus 로고
    • Representation of the secondary and tertiary structure of group I introns
    • Cech T.R., Damberger S.H., Gutell E.R. Representation of the secondary and tertiary structure of group I introns. Nat. Struct. Biol. 1994, 1:273-280.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 273-280
    • Cech, T.R.1    Damberger, S.H.2    Gutell, E.R.3
  • 15
    • 0030029150 scopus 로고    scopus 로고
    • Multiple insertions and deletions determine the size differences between the mitochondrial DNAs of the EAN and NAN races of Ophiostoma novo-ulmi
    • Charter N.W., Buck K.W., Brasier C.M. Multiple insertions and deletions determine the size differences between the mitochondrial DNAs of the EAN and NAN races of Ophiostoma novo-ulmi. Mycol. Res. 1996, 100:368-372.
    • (1996) Mycol. Res. , vol.100 , pp. 368-372
    • Charter, N.W.1    Buck, K.W.2    Brasier, C.M.3
  • 16
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier B.S., Stoddard B.L. Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucl. Acids Res. 2001, 29:3757-3774.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 17
    • 0027377879 scopus 로고
    • Group II and group III introns of twintrons: potential relationships with nuclear pre-mRNA introns
    • Copertino D.W., Hallick R.B. Group II and group III introns of twintrons: potential relationships with nuclear pre-mRNA introns. Trends Biochem. Sci. 1993, 18:467-471.
    • (1993) Trends Biochem. Sci. , vol.18 , pp. 467-471
    • Copertino, D.W.1    Hallick, R.B.2
  • 18
    • 0026111327 scopus 로고
    • Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene
    • Copertino D.W., Hallick R.B. Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene. EMBO J. 1991, 10:433-442.
    • (1991) EMBO J. , vol.10 , pp. 433-442
    • Copertino, D.W.1    Hallick, R.B.2
  • 19
    • 0028272134 scopus 로고
    • A group III twintron encoding a maturase-like gene excises through lariat intermediates
    • Copertino D.W., Hall E.T., Van Hook F.W., Jenkins K.P., Hallick R.B. A group III twintron encoding a maturase-like gene excises through lariat intermediates. Nucl. Acids Res. 1994, 22:1029-1036.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 1029-1036
    • Copertino, D.W.1    Hall, E.T.2    Van Hook, F.W.3    Jenkins, K.P.4    Hallick, R.B.5
  • 20
    • 0026410644 scopus 로고
    • A mixed group II/group III twintron in the Euglena gracilis chloroplast ribosomal protein S3 gene: evidence for intron insertion during gene evolution
    • Copertino D.W., Christopher D.A., Hallick R.B. A mixed group II/group III twintron in the Euglena gracilis chloroplast ribosomal protein S3 gene: evidence for intron insertion during gene evolution. Nucl. Acids Res. 1991, 19:6491-6497.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 6491-6497
    • Copertino, D.W.1    Christopher, D.A.2    Hallick, R.B.3
  • 21
    • 1842277195 scopus 로고
    • Mitochondrial excision-amplification plasmids in senescent and long-lived cultures of Podospora anserina
    • Plenum Press, New York, R.B. Wickner, A. Hinnebusch, A.M. Lambowitz, I.C. Gonsalus, A. Hollaender (Eds.)
    • Cummings D.J., Turker M.S., Domenico J.M. Mitochondrial excision-amplification plasmids in senescent and long-lived cultures of Podospora anserina. Extrachromosoma1 Elements in Lower Eukaryotes 1986, 129-146. Plenum Press, New York. R.B. Wickner, A. Hinnebusch, A.M. Lambowitz, I.C. Gonsalus, A. Hollaender (Eds.).
    • (1986) Extrachromosoma1 Elements in Lower Eukaryotes , pp. 129-146
    • Cummings, D.J.1    Turker, M.S.2    Domenico, J.M.3
  • 23
    • 0024446859 scopus 로고
    • Group I introns as mobile genetic elements: facts and mechanistic speculation - a review
    • Dujon B. Group I introns as mobile genetic elements: facts and mechanistic speculation - a review. Gene 1989, 82:91-114.
    • (1989) Gene , vol.82 , pp. 91-114
    • Dujon, B.1
  • 24
    • 0002435738 scopus 로고
    • Mitochondrial DNA instabilities and rearrangements in yeasts and fungi
    • The American Society for Microbiology, Washington, DC, D.E. Berg, M.M. Howe (Eds.)
    • Dujon B., Belcour L. Mitochondrial DNA instabilities and rearrangements in yeasts and fungi. Mobile DNA 1989, 861-878. The American Society for Microbiology, Washington, DC. D.E. Berg, M.M. Howe (Eds.).
    • (1989) Mobile DNA , pp. 861-878
    • Dujon, B.1    Belcour, L.2
  • 25
    • 0033552870 scopus 로고    scopus 로고
    • Mobile introns: retrohoming by complete reverse splicing
    • Eickbush T.H. Mobile introns: retrohoming by complete reverse splicing. Curr. Biol. 1999, 9:R11-R14.
    • (1999) Curr. Biol. , vol.9
    • Eickbush, T.H.1
  • 26
    • 84875624606 scopus 로고    scopus 로고
    • Learning to live together: mutualism between self-splicing introns and their hosts
    • Edgell D.R., Chalamcharla V.R., Belfort M. Learning to live together: mutualism between self-splicing introns and their hosts. BMC Biol. 2011, 11:9-22.
    • (2011) BMC Biol. , vol.11 , pp. 9-22
    • Edgell, D.R.1    Chalamcharla, V.R.2    Belfort, M.3
  • 27
    • 0345580612 scopus 로고    scopus 로고
    • Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
    • Einvik C., Elde M., Johansen S. Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. J. Biotechnol. 1998, 64:63-74.
    • (1998) J. Biotechnol. , vol.64 , pp. 63-74
    • Einvik, C.1    Elde, M.2    Johansen, S.3
  • 28
    • 0031978817 scopus 로고    scopus 로고
    • Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites
    • Einvik C., Nielsen H., Westhof E., Michel F., Johansen S. Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites. RNA 1998, 4:530-541.
    • (1998) RNA , vol.4 , pp. 530-541
    • Einvik, C.1    Nielsen, H.2    Westhof, E.3    Michel, F.4    Johansen, S.5
  • 29
    • 77649337588 scopus 로고    scopus 로고
    • Protein-facilitated folding of group II intron ribozymes
    • Fedorova O., Solem A., Pyle A.M. Protein-facilitated folding of group II intron ribozymes. J. Mol. Biol. 2010, 397:799-813.
    • (2010) J. Mol. Biol. , vol.397 , pp. 799-813
    • Fedorova, O.1    Solem, A.2    Pyle, A.M.3
  • 30
    • 34250631912 scopus 로고    scopus 로고
    • Group II introns: structure, folding and splicing mechanism
    • Fedorova O., Zingler N. Group II introns: structure, folding and splicing mechanism. Biol. Chem. 2007, 388:665-678.
    • (2007) Biol. Chem. , vol.388 , pp. 665-678
    • Fedorova, O.1    Zingler, N.2
  • 31
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein F.J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, F.J.1
  • 33
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • Gautheret D., Lambert A. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol. 2001, 313:1003-1011.
    • (2001) J. Mol. Biol. , vol.313 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 34
    • 77957234442 scopus 로고    scopus 로고
    • Better late than early: delayed translation of intron-encoded endonuclease I-TevI is required for efficient splicing of its host group I intron
    • Gibb E.A., Edgell D.R. Better late than early: delayed translation of intron-encoded endonuclease I-TevI is required for efficient splicing of its host group I intron. Mol. Microbiol. 2010, 78:35-46.
    • (2010) Mol. Microbiol. , vol.78 , pp. 35-46
    • Gibb, E.A.1    Edgell, D.R.2
  • 35
    • 26244448854 scopus 로고    scopus 로고
    • Optional mitochondrial introns and evidence for a homing endonuclease gene in the mtDNA rnl gene in Ophiostoma ulmi sensu lato
    • Gibb E.A., Hausner G. Optional mitochondrial introns and evidence for a homing endonuclease gene in the mtDNA rnl gene in Ophiostoma ulmi sensu lato. Mycol. Res. 2005, 109:1112-1126.
    • (2005) Mycol. Res. , vol.109 , pp. 1112-1126
    • Gibb, E.A.1    Hausner, G.2
  • 36
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfish gene
    • Goddard M.R., Burt A. Recurrent invasion and extinction of a selfish gene. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:13880-13885.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 13880-13885
    • Goddard, M.R.1    Burt, A.2
  • 37
    • 33751233858 scopus 로고    scopus 로고
    • Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements
    • Gogarten J.P., Hilario E. Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements. BMC Evol. Biol. 2006, 6:94.
    • (2006) BMC Evol. Biol. , vol.6 , pp. 94
    • Gogarten, J.P.1    Hilario, E.2
  • 39
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 40
    • 80955144232 scopus 로고    scopus 로고
    • The highly variable mitochondrial small subunit ribosomal RNA gene of Ophiostoma minus
    • Hafez M., Hausner G. The highly variable mitochondrial small subunit ribosomal RNA gene of Ophiostoma minus. Fungal Biol. 2011, 115:1122-1137.
    • (2011) Fungal Biol. , vol.115 , pp. 1122-1137
    • Hafez, M.1    Hausner, G.2
  • 41
    • 84875623987 scopus 로고    scopus 로고
    • Characterization of the O.ul-mS952 intron: a potential molecular marker to distinguish between Ophiostoma ulmi and Ophiostoma novo-ulmi subsp. americana
    • Hafez M., Hausner G. Characterization of the O.ul-mS952 intron: a potential molecular marker to distinguish between Ophiostoma ulmi and Ophiostoma novo-ulmi subsp. americana. Int. J. Agric. Biol. Sci. 2011, 59:1767-1775.
    • (2011) Int. J. Agric. Biol. Sci. , vol.59 , pp. 1767-1775
    • Hafez, M.1    Hausner, G.2
  • 42
    • 84865272073 scopus 로고    scopus 로고
    • Homing endonucleases: DNA scissors on a mission
    • Hafez M., Hausner G. Homing endonucleases: DNA scissors on a mission. Genome 2012, 55:553-569.
    • (2012) Genome , vol.55 , pp. 553-569
    • Hafez, M.1    Hausner, G.2
  • 44
    • 0001746523 scopus 로고
    • Cycloheximide sensitivity as a taxonomic character in Ceratocystis
    • Harrington T.C. Cycloheximide sensitivity as a taxonomic character in Ceratocystis. Mycologia 1981, 72:1123-1129.
    • (1981) Mycologia , vol.72 , pp. 1123-1129
    • Harrington, T.C.1
  • 45
    • 0002666881 scopus 로고
    • Biology and taxonomy of fungi associated with bark beetles
    • In: Schowalter, T.D., Filip, G.M. (Eds.), Beetle-Pathogen Interactions in Conifer Forests. Academic Press
    • Harrington, T.C., 1993. Biology and taxonomy of fungi associated with bark beetles. In: Schowalter, T.D., Filip, G.M. (Eds.), Beetle-Pathogen Interactions in Conifer Forests. Academic Press, pp. 37-58.
    • (1993) , pp. 37-58
    • Harrington, T.C.1
  • 46
    • 3042568753 scopus 로고    scopus 로고
    • The spread of LAGLIDADG homing endonuclease genes in rDNA
    • Haugen R., Bhattacharya D. The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucl. Acids Res. 2004, 32:2049-2057.
    • (2004) Nucl. Acids Res. , vol.32 , pp. 2049-2057
    • Haugen, R.1    Bhattacharya, D.2
  • 49
    • 33645660652 scopus 로고    scopus 로고
    • Fungi vectored by the introduced bark beetle Tomicus piniperda in Ontario, Canada and comments on the taxonomy of Leptographium lundbergii, L. terebrantis, L. truncatum and L. wingfieldii
    • Hausner G., Iranpour M., Kim J.J., Breuil C., Davis C.N., Gibb E.A., Reid J., Loewen P.C., Hopkin A.A. Fungi vectored by the introduced bark beetle Tomicus piniperda in Ontario, Canada and comments on the taxonomy of Leptographium lundbergii, L. terebrantis, L. truncatum and L. wingfieldii. Can. J. Bot. 2005, 83:1222-1237.
    • (2005) Can. J. Bot. , vol.83 , pp. 1222-1237
    • Hausner, G.1    Iranpour, M.2    Kim, J.J.3    Breuil, C.4    Davis, C.N.5    Gibb, E.A.6    Reid, J.7    Loewen, P.C.8    Hopkin, A.A.9
  • 50
    • 0000860779 scopus 로고
    • Ceratocystiopsis: a reappraisal based on molecular criteria
    • Hausner G., Reid J., Klassen G.R. Ceratocystiopsis: a reappraisal based on molecular criteria. Mycol. Res. 1993, 97:625-633.
    • (1993) Mycol. Res. , vol.97 , pp. 625-633
    • Hausner, G.1    Reid, J.2    Klassen, G.R.3
  • 51
    • 0036395090 scopus 로고    scopus 로고
    • Distribution of rRNA introns in the three-dimensional structure of the ribosome
    • Jackson S.A., Cannone J.J., Lee J.C., Gutell R.R., Woodson S.A. Distribution of rRNA introns in the three-dimensional structure of the ribosome. J. Mol. Biol. 2002, 323:35-52.
    • (2002) J. Mol. Biol. , vol.323 , pp. 35-52
    • Jackson, S.A.1    Cannone, J.J.2    Lee, J.C.3    Gutell, R.R.4    Woodson, S.A.5
  • 52
    • 0034963078 scopus 로고    scopus 로고
    • A new nomenclature of group I introns in ribosomal DNA
    • Johansen J.S., Haugen P. A new nomenclature of group I introns in ribosomal DNA. RNA 2001, 7:935-936.
    • (2001) RNA , vol.7 , pp. 935-936
    • Johansen, J.S.1    Haugen, P.2
  • 53
    • 44349105971 scopus 로고    scopus 로고
    • Lateral transfer of introns in the cryptophyte plastid genome
    • Khan H., Archibald J.M. Lateral transfer of introns in the cryptophyte plastid genome. Nucl. Acids Res. 2008, 36:3043-3053.
    • (2008) Nucl. Acids Res. , vol.36 , pp. 3043-3053
    • Khan, H.1    Archibald, J.M.2
  • 54
    • 0019857118 scopus 로고
    • Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E. coli 16S rRNA
    • Köchel H.G., Küntzel H. Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E. coli 16S rRNA. Nucl. Acids Res. 1981, 9:5689-5696.
    • (1981) Nucl. Acids Res. , vol.9 , pp. 5689-5696
    • Köchel, H.G.1    Küntzel, H.2
  • 55
    • 0002671710 scopus 로고    scopus 로고
    • Group I and group II ribozymes as RNPs: clues to the past and guides to the future
    • In: Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.), The RNA World, second ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Lambowitz, A.M., Caprara, M.G., Zimmerly, S., Perlman, P.S., 1999. Group I and group II ribozymes as RNPs: clues to the past and guides to the future. In: Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.), The RNA World, second ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 451-485.
    • (1999)
    • Lambowitz, A.M.1    Caprara, M.G.2    Zimmerly, S.3    Perlman, P.S.4
  • 56
    • 84863874209 scopus 로고    scopus 로고
    • Group II Introns: mobile Ribozymes that Invade DNA
    • In: Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.), The RNA World. Cold Spring Harbor Perspectives in Biology, fourth ed.
    • Lambowitz, A.M., Zimmerly, S., 2011. Group II Introns: mobile Ribozymes that Invade DNA. In: Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.), The RNA World. Cold Spring Harbor Perspectives in Biology, vol. 1, fourth ed., p. a003616.
    • (2011) , vol.1
    • Lambowitz, A.M.1    Zimmerly, S.2
  • 58
    • 33847192548 scopus 로고    scopus 로고
    • Mitochondrial introns: a critical view
    • Lang B.F., Laforest M.J., Burger G. Mitochondrial introns: a critical view. Trends Genet. 2007, 23:119-125.
    • (2007) Trends Genet. , vol.23 , pp. 119-125
    • Lang, B.F.1    Laforest, M.J.2    Burger, G.3
  • 59
    • 0030452773 scopus 로고    scopus 로고
    • New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme
    • Lehnert V., Jaeger L., Michel F., Westhof E. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem. Biol. 1996, 3:993-1009.
    • (1996) Chem. Biol. , vol.3 , pp. 993-1009
    • Lehnert, V.1    Jaeger, L.2    Michel, F.3    Westhof, E.4
  • 60
    • 17644377267 scopus 로고    scopus 로고
    • Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup
    • Li Z.J., Zhang Y. Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup. Nucl. Acids Res. 2005, 33:2118-2128.
    • (2005) Nucl. Acids Res. , vol.33 , pp. 2118-2128
    • Li, Z.J.1    Zhang, Y.2
  • 61
    • 79959288175 scopus 로고    scopus 로고
    • Recurrent insertion of 5'-terminal nucleotides and loss of the branchpoint motif in lineages of group II introns inserted in mitochondrial preribosomal RNAs
    • Li C.F., Costa M., Bassi G., Lai Y.K., Michel F. Recurrent insertion of 5'-terminal nucleotides and loss of the branchpoint motif in lineages of group II introns inserted in mitochondrial preribosomal RNAs. RNA 2011, 17:1321-1335.
    • (2011) RNA , vol.17 , pp. 1321-1335
    • Li, C.F.1    Costa, M.2    Bassi, G.3    Lai, Y.K.4    Michel, F.5
  • 62
    • 0028848837 scopus 로고
    • Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad
    • Maier U.G., Rensing S.A., Igloi G.L., Maerz M. Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad. Mol. Gen. Genet. 1995, 246:128-131.
    • (1995) Mol. Gen. Genet. , vol.246 , pp. 128-131
    • Maier, U.G.1    Rensing, S.A.2    Igloi, G.L.3    Maerz, M.4
  • 63
    • 1642389264 scopus 로고    scopus 로고
    • Speciation in the large-spored Metschnikowia clade and establishment of a new species, Metschnikowia borealis comb. nov
    • Marinoni G., Lachance M.A. Speciation in the large-spored Metschnikowia clade and establishment of a new species, Metschnikowia borealis comb. nov. FEMS Yeast Res. 2004, 4:587-596.
    • (2004) FEMS Yeast Res. , vol.4 , pp. 587-596
    • Marinoni, G.1    Lachance, M.A.2
  • 64
    • 0037126592 scopus 로고    scopus 로고
    • Mechanism of maturase-promoted group II intron splicing
    • Matsuura M., Noah J.W., Lambowitz A.M. Mechanism of maturase-promoted group II intron splicing. EMBO J. 2001, 20:7259-7270.
    • (2001) EMBO J. , vol.20 , pp. 7259-7270
    • Matsuura, M.1    Noah, J.W.2    Lambowitz, A.M.3
  • 66
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel F., Ferat J.L. Structure and activities of group II introns. Annu. Rev. Biochem. 1995, 64:435-461.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 67
    • 0025678737 scopus 로고
    • Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F., Westhof E. Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 1990, 216:585-610.
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 68
    • 0022384634 scopus 로고
    • Mitochondrial class II introns encode proteins related to the reverse transcriptases of retroviruses
    • Michel F., Lang B.F. Mitochondrial class II introns encode proteins related to the reverse transcriptases of retroviruses. Nature 1985, 316:641-643.
    • (1985) Nature , vol.316 , pp. 641-643
    • Michel, F.1    Lang, B.F.2
  • 69
    • 0022351415 scopus 로고
    • Analysis of class I introns in a mitochondrial plasmid associated with senescence of Podospora anserina reveals extraordinary resemblance to the Tetrahymena ribosomal intron
    • Michel F., Cummings D.J. Analysis of class I introns in a mitochondrial plasmid associated with senescence of Podospora anserina reveals extraordinary resemblance to the Tetrahymena ribosomal intron. Curr. Genet. 1985, 10:69-79.
    • (1985) Curr. Genet. , vol.10 , pp. 69-79
    • Michel, F.1    Cummings, D.J.2
  • 70
    • 63549105637 scopus 로고    scopus 로고
    • The ribozyme core of group II introns: a structure in want of partners
    • Michel F., Costa M., Westhof E. The ribozyme core of group II introns: a structure in want of partners. Trends Biochem. Sci. 2009, 34:189-199.
    • (2009) Trends Biochem. Sci. , vol.34 , pp. 189-199
    • Michel, F.1    Costa, M.2    Westhof, E.3
  • 71
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - a review
    • Michel F., Umesono K., Ozeki H. Comparative and functional anatomy of group II catalytic introns - a review. Gene 1989, 82:5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 72
    • 0037440002 scopus 로고    scopus 로고
    • Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants
    • Mohr G., Lambowitz A.M. Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants. Nucl. Acids Res. 2003, 31:647-652.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 647-652
    • Mohr, G.1    Lambowitz, A.M.2
  • 73
    • 0035896040 scopus 로고    scopus 로고
    • Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns
    • Mohr G., Rennard R., Cherniack A.D., Stryker J., Lambowitz A.M. Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns. J. Mol. Biol. 2001, 307:75-92.
    • (2001) J. Mol. Biol. , vol.307 , pp. 75-92
    • Mohr, G.1    Rennard, R.2    Cherniack, A.D.3    Stryker, J.4    Lambowitz, A.M.5
  • 75
    • 0024285934 scopus 로고
    • Independent evolution of structural and coding regions in a Neurospora mitochondrial intron
    • Mota E.M., Collins R.A. Independent evolution of structural and coding regions in a Neurospora mitochondrial intron. Nature 1988, 332:654-656.
    • (1988) Nature , vol.332 , pp. 654-656
    • Mota, E.M.1    Collins, R.A.2
  • 76
    • 77956046534 scopus 로고    scopus 로고
    • A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions
    • Mullineux S.T., Costa M., Bassi G.S., Michel F., Hausner G. A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions. RNA 2010, 16:1818-1831.
    • (2010) RNA , vol.16 , pp. 1818-1831
    • Mullineux, S.T.1    Costa, M.2    Bassi, G.S.3    Michel, F.4    Hausner, G.5
  • 77
    • 79961025561 scopus 로고    scopus 로고
    • Evolutionary dynamics of the mS952 intron, a novel mitochondrial group II intron encoding a LAGLIDADG homing endonuclease gene
    • Mullineux S.T., Willows K., Hausner G. Evolutionary dynamics of the mS952 intron, a novel mitochondrial group II intron encoding a LAGLIDADG homing endonuclease gene. J. Mol. Evol. 2011, 72:433-449.
    • (2011) J. Mol. Evol. , vol.72 , pp. 433-449
    • Mullineux, S.T.1    Willows, K.2    Hausner, G.3
  • 78
    • 0002511466 scopus 로고    scopus 로고
    • GeneDoc: analysis and visualization of genetic variation
    • Nicholas K.B., Nicholas H.B., Deerfield D.W. GeneDoc: analysis and visualization of genetic variation. EMB News 1997, 4:14.
    • (1997) EMB News , vol.4 , pp. 14
    • Nicholas, K.B.1    Nicholas, H.B.2    Deerfield, D.W.3
  • 79
    • 0034887570 scopus 로고    scopus 로고
    • Evolutionary dynamics of multiple group I introns in nuclear ribosomal RNA genes of endoparasitic fungi of the genus Cordyceps
    • Nikoh N., Fukatsu T. Evolutionary dynamics of multiple group I introns in nuclear ribosomal RNA genes of endoparasitic fungi of the genus Cordyceps. Mol. Biol. Evol. 2001, 18:1631-1642.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1631-1642
    • Nikoh, N.1    Fukatsu, T.2
  • 80
    • 0019830772 scopus 로고
    • Secondary structure of 16S ribosomal RNA
    • Noller H.F., Woese C.R. Secondary structure of 16S ribosomal RNA. Science 1981, 212:403-411.
    • (1981) Science , vol.212 , pp. 403-411
    • Noller, H.F.1    Woese, C.R.2
  • 81
    • 0000917004 scopus 로고
    • Taxonomy of the genus Ceratocystis in Manitoba
    • Olchowecki A., Reid J. Taxonomy of the genus Ceratocystis in Manitoba. Can. J. Bot. 1974, 52:1675-1711.
    • (1974) Can. J. Bot. , vol.52 , pp. 1675-1711
    • Olchowecki, A.1    Reid, J.2
  • 82
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display phylogenetic trees on personal computers
    • Page R.D.M. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 1996, 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 83
    • 84869113628 scopus 로고    scopus 로고
    • The mitochondrial LSU rRNA group II intron of Ustilago maydis encodes an active homing endonuclease likely involved in intron mobility
    • Pfeifer A., Martin B., Kämper J., Basse C.W. The mitochondrial LSU rRNA group II intron of Ustilago maydis encodes an active homing endonuclease likely involved in intron mobility. PLoS ONE 2012, 7:e49551.
    • (2012) PLoS ONE , vol.7
    • Pfeifer, A.1    Martin, B.2    Kämper, J.3    Basse, C.W.4
  • 84
    • 72449171517 scopus 로고    scopus 로고
    • Resolving taxonomic and phylogenetic incongruence within the species Ceratocystiopsis minuta
    • Plattner A., Kim J.-J., Reid J., Hausner G., Woon Y.L., Yamaoka Y., Breuil C. Resolving taxonomic and phylogenetic incongruence within the species Ceratocystiopsis minuta. Mycologia 2009, 101:878-887.
    • (2009) Mycologia , vol.101 , pp. 878-887
    • Plattner, A.1    Kim, J.-J.2    Reid, J.3    Hausner, G.4    Woon, Y.L.5    Yamaoka, Y.6    Breuil, C.7
  • 85
    • 33847676447 scopus 로고    scopus 로고
    • Folding of group II introns: a model system for large, multidomain RNAs?
    • Pyle A.M., Fedorova O., Waldsich C. Folding of group II introns: a model system for large, multidomain RNAs?. Trends Biochem. Sci. 2007, 32:138-145.
    • (2007) Trends Biochem. Sci. , vol.32 , pp. 138-145
    • Pyle, A.M.1    Fedorova, O.2    Waldsich, C.3
  • 86
    • 23844545533 scopus 로고    scopus 로고
    • Group II intron retroelements: function and diversity
    • Robart A.R., Zimmerly S. Group II intron retroelements: function and diversity. Cytogenet. Genome Res. 2005, 110:589-597.
    • (2005) Cytogenet. Genome Res. , vol.110 , pp. 589-597
    • Robart, A.R.1    Zimmerly, S.2
  • 87
    • 4344648036 scopus 로고    scopus 로고
    • Bayesian inference of character evolution
    • Ronquist F. Bayesian inference of character evolution. Trends Ecol. Evol. 2004, 19:475-481.
    • (2004) Trends Ecol. Evol. , vol.19 , pp. 475-481
    • Ronquist, F.1
  • 88
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 89
    • 84869889758 scopus 로고    scopus 로고
    • The mtDNA rps3 locus has been invaded by a group I intron in some species of Grosmannia
    • Rudski S.M., Hausner G. The mtDNA rps3 locus has been invaded by a group I intron in some species of Grosmannia. Mycoscience 2012, 53:471-475.
    • (2012) Mycoscience , vol.53 , pp. 471-475
    • Rudski, S.M.1    Hausner, G.2
  • 90
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider T.D., Stephens R.M. Sequence logos: a new way to display consensus sequences. Nucl. Acids Res. 1990, 18:6097-6100.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 91
    • 70349902619 scopus 로고    scopus 로고
    • Genes-within-genes: multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within a rnl group I intron of Ophiostoma and related taxa
    • Sethuraman J., Majer A., Friedrich N.C., Edgell D.R., Hausner G. Genes-within-genes: multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within a rnl group I intron of Ophiostoma and related taxa. Mol. Biol. Evol. 2009, 26:2299-2315.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2299-2315
    • Sethuraman, J.1    Majer, A.2    Friedrich, N.C.3    Edgell, D.R.4    Hausner, G.5
  • 92
    • 42649102999 scopus 로고    scopus 로고
    • The sporadic occurrence of group I intron-like element in the mtDNA rnl gene of Ophiostoma novo-ulmi subspecies americana
    • Sethuraman J., Okoli V.C., Majer A., Corkery T., Hausner G. The sporadic occurrence of group I intron-like element in the mtDNA rnl gene of Ophiostoma novo-ulmi subspecies americana. Mycol. Res. 2008, 112:564-582.
    • (2008) Mycol. Res. , vol.112 , pp. 564-582
    • Sethuraman, J.1    Okoli, V.C.2    Majer, A.3    Corkery, T.4    Hausner, G.5
  • 94
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard B.L. Homing endonuclease structure and function. Quat. Rev. Biophys. 2005, 38:49-95.
    • (2005) Quat. Rev. Biophys. , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 95
    • 78651240053 scopus 로고    scopus 로고
    • Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification
    • Stoddard B.L. Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification. Structure 2011, 19:7-15.
    • (2011) Structure , vol.19 , pp. 7-15
    • Stoddard, B.L.1
  • 97
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal-X windows interface. flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The Clustal-X windows interface. flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 1997, 25:4876-4882.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 98
    • 0034910710 scopus 로고    scopus 로고
    • Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases
    • Toor N., Hausner G., Zimmerly S. Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases. RNA 2001, 7:1142-1152.
    • (2001) RNA , vol.7 , pp. 1142-1152
    • Toor, N.1    Hausner, G.2    Zimmerly, S.3
  • 99
    • 0036849042 scopus 로고    scopus 로고
    • Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns
    • Toor N., Zimmerly S. Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns. RNA 2002, 8:1373-1377.
    • (2002) RNA , vol.8 , pp. 1373-1377
    • Toor, N.1    Zimmerly, S.2
  • 101
    • 0033180584 scopus 로고    scopus 로고
    • A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
    • Wank H., Sanfilippo J., Singh R.N., Matsuura M., Lambowitz A.M. A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA. Mol. Cell. 1999, 4:239-250.
    • (1999) Mol. Cell. , vol.4 , pp. 239-250
    • Wank, H.1    Sanfilippo, J.2    Singh, R.N.3    Matsuura, M.4    Lambowitz, A.M.5
  • 102
    • 0003421150 scopus 로고
    • Ceratocystis and Ophiostoma. Biology, Taxonomy and Ecology
    • American Phytopathological Society Press, St. Paul.
    • Wingfield, M.J., Seifert, K.A., Webber, J.F. (Eds.), 1993. Ceratocystis and Ophiostoma. Biology, Taxonomy and Ecology. American Phytopathological Society Press, St. Paul.
    • (1993)
    • Wingfield, M.J.1    Seifert, K.A.2    Webber, J.F.3
  • 103
    • 0024198937 scopus 로고
    • The variable mitochondrial genome of ascomycetes: organization, mutational alterations, and expression
    • Wolf K., Del Giudice L. The variable mitochondrial genome of ascomycetes: organization, mutational alterations, and expression. Adv. Genet. 1988, 25:185-308.
    • (1988) Adv. Genet. , vol.25 , pp. 185-308
    • Wolf, K.1    Del Giudice, L.2
  • 104
    • 33747765611 scopus 로고    scopus 로고
    • Multi-gene phylogenies define Ceratocystiopsis and Grosmannia distinct from Ophiostoma
    • Zipfel R.D., de Beer Z.W., Jacobs K., Wingfield B.D., Wingfield M.J. Multi-gene phylogenies define Ceratocystiopsis and Grosmannia distinct from Ophiostoma. Studies Mycol. 2006, 55:75-97.
    • (2006) Studies Mycol. , vol.55 , pp. 75-97
    • Zipfel, R.D.1    de Beer, Z.W.2    Jacobs, K.3    Wingfield, B.D.4    Wingfield, M.J.5
  • 105
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 2003, 31:3406-3415.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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