-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold R, Mann M. 2003. Mass spectrometry-based proteomics. Nature 422:198-207
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, et al. 2014. Mass-spectrometry-based draft of the human proteome. Nature 509:582-87
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Gholami, A.M.4
Lieberenz, M.5
-
3
-
-
84901599553
-
A draft map of the human proteome
-
Kim M-S, Pinto SM, Getnet D, Nirujogi RS,Manda SS, et al. 2014. A draft map of the human proteome. Nature 509:575-81
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.-S.1
Pinto, S.M.2
Getnet, D.3
Nirujogi, R.S.4
Manda, S.S.5
-
4
-
-
84920269464
-
Tissue-based map of the human proteome
-
Uhlén M, Fagerberg L, Hallström BM, Lindskog C, Oksvold P, et al. 2015. Tissue-based map of the human proteome. Science 347:1260419
-
(2015)
Science
, vol.347
, pp. 1260419
-
-
Uhlén, M.1
Fagerberg, L.2
Hallström, B.M.3
Lindskog, C.4
Oksvold, P.5
-
5
-
-
17844396912
-
Antibody-based proteomics for human tissue profiling
-
Uhlén M, Ponten F. 2005. Antibody-based proteomics for human tissue profiling. Mol. Cell. Proteomics 4:384-93
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 384-393
-
-
Uhlén, M.1
Ponten, F.2
-
6
-
-
84940550197
-
Mapping proteins with spatial proteomics
-
Marx V. 2015. Mapping proteins with spatial proteomics. Nat. Methods 12:815-19
-
(2015)
Nat. Methods
, vol.12
, pp. 815-819
-
-
Marx, V.1
-
7
-
-
33846088138
-
HMDB: The human metabolome database
-
WishartDS, Tzur D, Knox C, Eisner R,GuoAC, et al. 2007.HMDB:theHumanMetabolomeDatabase. Nucleic Acids Res. 35:D521-26
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D521-D526
-
-
Wishart, D.S.1
Tzur, D.2
Knox, C.3
Eisner, R.4
Guo, A.C.5
-
8
-
-
84876148784
-
HMDB3. 0-The human metabolome database in 2013
-
WishartDS, JewisonT,Guo AC,Wilson M, Knox C, et al. 2013.HMDB3.0-TheHuman Metabolome Database in 2013. Nucleic Acids Res. 41:D801-7
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D801-D807
-
-
Wishart, D.S.1
Jewison, T.2
Guo, A.C.3
Wilson, M.4
Knox, C.5
-
9
-
-
84908503823
-
High resolution mass spectrometry based techniques at the crossroads of metabolic pathways
-
Junot C, Fenaille F, Colsch B, Bécher F. 2014. High resolution mass spectrometry based techniques at the crossroads of metabolic pathways. Mass Spectrom. Rev. 33:471-500
-
(2014)
Mass Spectrom. Rev.
, vol.33
, pp. 471-500
-
-
Junot, C.1
Fenaille, F.2
Colsch, B.3
Bécher, F.4
-
11
-
-
7444253428
-
Systems biology and new technologies enable predictive and preventative medicine
-
Hood L, Heath JR, Phelps ME, Lin B. 2004. Systems biology and new technologies enable predictive and preventative medicine. Science 306:640-43
-
(2004)
Science
, vol.306
, pp. 640-643
-
-
Hood, L.1
Heath, J.R.2
Phelps, M.E.3
Lin, B.4
-
12
-
-
0043069547
-
Understanding 'global' systems biology: Metabonomics and the continuum of metabolism
-
Nicholson JK, Wilson ID. 2003. Understanding 'global' systems biology: metabonomics and the continuum of metabolism. Nat. Rev. Drug Discov. 2:668-76
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, pp. 668-676
-
-
Nicholson, J.K.1
Wilson, I.D.2
-
14
-
-
84938907265
-
A combined omics approach to generate the surface atlas of human naive CD4+ Tcells during early T-cell receptor activation
-
Graessel A, Hauck SM, von Toerne C, Kloppmann E, Goldberg T, et al. 2015. A combined omics approach to generate the surface atlas of human naive CD4+ Tcells during early T-cell receptor activation. Mol. Cell. Proteomics 14:2085-102
-
(2015)
Mol. Cell. Proteomics
, vol.14
, pp. 2085-2102
-
-
Graessel, A.1
Hauck, S.M.2
Von Toerne, C.3
Kloppmann, E.4
Goldberg, T.5
-
15
-
-
0030039619
-
The art and practice of structure-based drug design: A molecular modeling perspective
-
Bohacek RS, McMartin C, Guida WC. 1996. The art and practice of structure-based drug design: A molecular modeling perspective. Med. Res. Rev. 16:3-50
-
(1996)
Med. Res. Rev.
, vol.16
, pp. 3-50
-
-
Bohacek, R.S.1
McMartin, C.2
Guida, W.C.3
-
16
-
-
83355172941
-
Understanding and classifying metabolite space and metabolite-likeness
-
Peironcely JE, Reijmers T, Coulier L, Bender A, Hankemeier T. 2011. Understanding and classifying metabolite space and metabolite-likeness. PLOS ONE 6:e28966
-
(2011)
PLOS ONE
, vol.6
, pp. e28966
-
-
Peironcely, J.E.1
Reijmers, T.2
Coulier, L.3
Bender, A.4
Hankemeier, T.5
-
17
-
-
79960233029
-
High-throughput screening of small molecule libraries using SAMDI mass spectrometry
-
Gurard-Levin ZA, Scholle MD, Eisenberg AH, Mrksich M. 2011. High-throughput screening of small molecule libraries using SAMDI mass spectrometry. ACS Comb. Sci. 13:347-50
-
(2011)
ACS Comb. Sci.
, vol.13
, pp. 347-350
-
-
Gurard-Levin, Z.A.1
Scholle, M.D.2
Eisenberg, A.H.3
Mrksich, M.4
-
18
-
-
84906070972
-
High throughput screening of enzyme activity with mass spectrometry imaging
-
de Rond T, Danielewicz M, Northen T. 2015. High throughput screening of enzyme activity with mass spectrometry imaging. Curr. Opin. Biotechnol. 31:1-9
-
(2015)
Curr. Opin. Biotechnol.
, vol.31
, pp. 1-9
-
-
De Rond, T.1
Danielewicz, M.2
Northen, T.3
-
19
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis ER. 2008. The impact of next-generation sequencing technology on genetics. Trends Genet. 24:133-41
-
(2008)
Trends Genet.
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
20
-
-
84938709678
-
Big data: Astronomical or genomical?
-
Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, et al. 2015. Big data: astronomical or genomical? PLOS Biol. 13:e1002195
-
(2015)
PLOS Biol.
, vol.13
, pp. e1002195
-
-
Stephens, Z.D.1
Lee, S.Y.2
Faghri, F.3
Campbell, R.H.4
Zhai, C.5
-
22
-
-
84903752225
-
Data-driven medicinal chemistry in the era of big data
-
Lusher SJ,McGuire R, van Schaik RC,NicholsonCD, de Vlieg J. 2014. Data-driven medicinal chemistry in the era of big data. Drug Discov. Today 19:859-68
-
(2014)
Drug Discov. Today
, vol.19
, pp. 859-868
-
-
Lusher, S.J.1
McGuire, R.2
Van Schaik, R.C.3
Nicholson, C.D.4
De Vlieg, J.5
-
23
-
-
79955765960
-
MzServer: Web-based programmatic access formass spectrometry data analysis
-
M110.003988
-
Askenazi M, Webber JT, Marto JA. 2011. mzServer: web-based programmatic access formass spectrometry data analysis. Mol. Cell. Proteomics 10:M110.003988
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Askenazi, M.1
Webber, J.T.2
Marto, J.A.3
-
24
-
-
80155169023
-
Computing for the Large Hadron Collider
-
Bird I. 2011. Computing for the Large Hadron Collider. Annu. Rev. Nuclear Part. Sci. 61:99-118
-
(2011)
Annu. Rev. Nuclear Part. Sci.
, vol.61
, pp. 99-118
-
-
Bird, I.1
-
28
-
-
54949108677
-
Chapter 12-PubChem: Integrated platform of small molecules and biological activities
-
Bolton EE, Wang Y, Thiessen PA, Bryant SH. 2008. Chapter 12-PubChem: integrated platform of small molecules and biological activities. Annu. Rep. Comput. Chem. 4:217-41
-
(2008)
Annu. Rep. Comput. Chem.
, vol.4
, pp. 217-241
-
-
Bolton, E.E.1
Wang, Y.2
Thiessen, P.A.3
Bryant, S.H.4
-
29
-
-
84916211748
-
-
Accessed September 28
-
PubChem Substance Database. https://pubchem.ncbi.nlm.nih.gov. Accessed September 28, 2015
-
(2015)
PubChem Substance Database
-
-
-
30
-
-
84856521159
-
-
Accessed September 28
-
PubChem Compound Database. https://pubchem.ncbi.nlm.nih.gov. Accessed September 28, 2015
-
(2015)
PubChem Compound Database
-
-
-
31
-
-
78449296488
-
ChemSpider: An online chemical information resource
-
Pence HE, Williams A. 2010. ChemSpider: an online chemical information resource. J. Chem. Educ. 87:1123-24
-
(2010)
J. Chem. Educ.
, vol.87
, pp. 1123-1124
-
-
Pence, H.E.1
Williams, A.2
-
33
-
-
84891762026
-
The ChEMBL bioactivity database: An update
-
Bento AP, Gaulton A, Hersey A, Bellis LJ, Chambers J, et al. 2014. The ChEMBL bioactivity database: an update. Nucleic Acids Res. 42:D1083-90
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1083-D1090
-
-
Bento, A.P.1
Gaulton, A.2
Hersey, A.3
Bellis, L.J.4
Chambers, J.5
-
34
-
-
84891767304
-
DrugBank 4.0: Shedding new light on drug metabolism
-
Law V, Knox C, Djoumbou Y, Jewison T, Guo AC, et al. 2014. DrugBank 4.0: shedding new light on drug metabolism. Nucleic Acids Res. 42:D1091-97
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1091-D1097
-
-
Law, V.1
Knox, C.2
Djoumbou, Y.3
Jewison, T.4
Guo, A.C.5
-
35
-
-
11144320699
-
Navigating chemical space for biology and medicine
-
Lipinski C, Hopkins A. 2004. Navigating chemical space for biology and medicine. Nature 432:855-61
-
(2004)
Nature
, vol.432
, pp. 855-861
-
-
Lipinski, C.1
Hopkins, A.2
-
36
-
-
84877823346
-
Stochastic voyages into uncharted chemical space produce a representative library of all possible drug-like compounds
-
Virshup AM,Contreras-García J, Wipf P, YangW,BeratanDN. 2013. Stochastic voyages into uncharted chemical space produce a representative library of all possible drug-like compounds. J. Am. Chem. Soc. 135:7296-303
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 7296-7303
-
-
Virshup, A.M.1
Contreras-García, J.2
Wipf, P.3
Yang, W.4
Beratan, D.N.5
-
38
-
-
84873036431
-
Visualization and virtual screening of the Chemical Universe Database GDB-17
-
Ruddigkeit L, Blum LC, Reymond J-L. 2013. Visualization and virtual screening of the Chemical Universe Database GDB-17. J. Chem. Inf. Model. 53:56-65
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 56-65
-
-
Ruddigkeit, L.1
Blum, L.C.2
Reymond, J.-L.3
-
39
-
-
84925393362
-
The chemical space project
-
Reymond J-L. 2015. The Chemical Space Project. Acc. Chem. Res. 48:722-30
-
(2015)
Acc. Chem. Res.
, vol.48
, pp. 722-730
-
-
Reymond, J.-L.1
-
40
-
-
0042202919
-
Chemography: The art of navigating in chemical space
-
Oprea TI, Gottfries J. 2001. Chemography: The art of navigating in chemical space. J. Comb. Chem. 3:157-66
-
(2001)
J. Comb. Chem.
, vol.3
, pp. 157-166
-
-
Oprea, T.I.1
Gottfries, J.2
-
41
-
-
33845780212
-
Basic overview of chemoinformatics
-
Engel T. 2006. Basic overview of chemoinformatics. J. Chem. Inform. Model. 46:2267-77
-
(2006)
J. Chem. Inform. Model.
, vol.46
, pp. 2267-2277
-
-
Engel, T.1
-
42
-
-
79954511288
-
Chemoinformatics as a theoretical chemistry discipline
-
Varnek A, Baskin II. 2011. Chemoinformatics as a theoretical chemistry discipline. Mol. Inform. 30:20-32
-
(2011)
Mol. Inform.
, vol.30
, pp. 20-32
-
-
Varnek, A.1
Baskin, I.I.2
-
43
-
-
84960334852
-
-
Columbus, OH: Chem. Abstr. Serv. Accessed September 28, 2015
-
Scifinder. 2015. Columbus, OH: Chem. Abstr. Serv. https://scifinder.cas.org/. Accessed September 28, 2015
-
(2015)
Scifinder
-
-
-
44
-
-
77955112226
-
Article 50 million: An estimate of the number of scholarly articles in existence
-
Jinha AE. 2010. Article 50 million: an estimate of the number of scholarly articles in existence. Learned Publ. 23:258-63
-
(2010)
Learned Publ.
, vol.23
, pp. 258-263
-
-
Jinha, A.E.1
-
45
-
-
47949086333
-
The quantum limit to Moore's law
-
Powell JR. 2008. The quantum limit to Moore's law. Proc. IEEE 96:1247-48
-
(2008)
Proc. IEEE
, vol.96
, pp. 1247-1248
-
-
Powell, J.R.1
-
46
-
-
23744488585
-
Kryder's law
-
32-22
-
Walter C. 2005. Kryder's law. Sci. Am. 293:32-22
-
(2005)
Sci. Am.
, vol.293
-
-
Walter, C.1
-
49
-
-
33645792604
-
Physically realistic homology models built with Rosetta can be more accurate than their templates
-
Misura KMS, Chivian D, Rohl CA, Kim DE, Baker D. 2006. Physically realistic homology models built with Rosetta can be more accurate than their templates. PNAS 103:5361-66
-
(2006)
PNAS
, vol.103
, pp. 5361-5366
-
-
Misura, K.M.S.1
Chivian, D.2
Rohl, C.A.3
Kim, D.E.4
Baker, D.5
-
50
-
-
77950673061
-
Practically useful: What the Rosetta protein modeling suite can do for you
-
Kaufmann KW, Lemmon GH, DeLuca SL, Sheehan JH, Meiler J. 2010. Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry 49:2987-98
-
(2010)
Biochemistry
, vol.49
, pp. 2987-2998
-
-
Kaufmann, K.W.1
Lemmon, G.H.2
DeLuca, S.L.3
Sheehan, J.H.4
Meiler, J.5
-
51
-
-
82755186510
-
Algorithm discovery by protein folding game players
-
Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, et al. 2011. Algorithm discovery by protein folding game players. PNAS 108:18949-53
-
(2011)
PNAS
, vol.108
, pp. 18949-18953
-
-
Khatib, F.1
Cooper, S.2
Tyka, M.D.3
Xu, K.4
Makedon, I.5
-
52
-
-
80455154956
-
Crystal structure of a monomeric retroviral protease solved by protein folding game players
-
Khatib F, DiMaio F, Cooper S, KazmierczykM, Gilski M, et al. 2011. Crystal structure of a monomeric retroviral protease solved by protein folding game players. Nat. Struct. Mol. Biol. 18:1175-77
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1175-1177
-
-
Khatib, F.1
DiMaio, F.2
Cooper, S.3
Kazmierczyk, M.4
Gilski, M.5
-
53
-
-
80955159982
-
High-resolution structure of a retroviral protease folded as a monomer
-
Gilski M, Kazmierczyk M, Krzywda S, Zabranska H, Cooper S, et al. 2011. High-resolution structure of a retroviral protease folded as a monomer. Acta Crystallogr. D 67:907-14
-
(2011)
Acta Crystallogr. D
, vol.67
, pp. 907-914
-
-
Gilski, M.1
Kazmierczyk, M.2
Krzywda, S.3
Zabranska, H.4
Cooper, S.5
-
54
-
-
84856723541
-
Increased diels-alderase activity through backbone remodeling guided by Foldit players
-
Eiben CB, Siegel JB, Bale JB, Cooper S, Khatib F, et al. 2012. Increased diels-alderase activity through backbone remodeling guided by Foldit players. Nat. Biotechnol. 30:190-92
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 190-192
-
-
Eiben, C.B.1
Siegel, J.B.2
Bale, J.B.3
Cooper, S.4
Khatib, F.5
-
56
-
-
84891874938
-
Crowdsourcing natural products discovery to access uncharted dimensions of fungal metabolite diversity
-
Du L, Robles AJ, King JB, Powell DR,Miller AN, et al. 2014. Crowdsourcing natural products discovery to access uncharted dimensions of fungal metabolite diversity. Angew. Chem. Int. Ed. 53:804-9
-
(2014)
Angew. Chem. Int. Ed.
, vol.53
, pp. 804-809
-
-
Du, L.1
Robles, A.J.2
King, J.B.3
Powell, D.R.4
Miller, A.N.5
-
57
-
-
84893351260
-
PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development
-
Martin SF,Falkenberg H, DyrlundTF, Khoudoli GA, MageeanCJ, LindingR. 2013.PROTEINCHALLENGE: crowd sourcing in proteomics analysis and software development. J. Proteomics 88:41-46
-
(2013)
J. Proteomics
, vol.88
, pp. 41-46
-
-
Martin, S.F.1
Falkenberg, H.2
Dyrlund, T.F.3
Khoudoli, G.A.4
Mageean, C.J.5
Linding, R.6
-
58
-
-
84893021599
-
Critical assessment of methods of protein structure prediction (CASP)-round x
-
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A. 2014. Critical assessment of methods of protein structure prediction (CASP)-round x. Proteins Struct. Funct. Bioinform. 82:1-6
-
(2014)
Proteins Struct. Funct. Bioinform.
, vol.82
, pp. 1-6
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
Schwede, T.4
Tramontano, A.5
-
59
-
-
84870305264
-
Wisdom of crowds for robust gene network inference
-
Marbach D, Costello JC, Kuffner R, Vega NM, Prill RJ, et al. 2012. Wisdom of crowds for robust gene network inference. Nat. Methods 9:796-804
-
(2012)
Nat. Methods
, vol.9
, pp. 796-804
-
-
Marbach, D.1
Costello, J.C.2
Kuffner, R.3
Vega, N.M.4
Prill, R.J.5
-
61
-
-
0036687199
-
Informatics and hypothesis-driven research
-
Smalheiser NR. 2002. Informatics and hypothesis-driven research. EMBO Rep. 3:702-2
-
(2002)
EMBO Rep.
, vol.3
, pp. 702-712
-
-
Smalheiser, N.R.1
-
62
-
-
84907325157
-
The rise of "big data" on cloud computing: Review and open research issues
-
Hashem IAT, Yaqoob I, Anuar NB, Mokhtar S, Gani A, Ullah Khan S. 2015. The rise of "big data" on cloud computing: review and open research issues. Inf. Syst. 47:98-115
-
(2015)
Inf. Syst.
, vol.47
, pp. 98-115
-
-
Hashem, I.A.T.1
Yaqoob, I.2
Anuar, N.B.3
Mokhtar, S.4
Gani, A.5
Ullah Khan, S.6
-
64
-
-
84861915827
-
XCMS online: A web-based platform to process untargeted metabolomic data
-
Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G. 2012. XCMS online: A web-based platform to process untargeted metabolomic data. Anal. Chem. 84:5035-39
-
(2012)
Anal. Chem.
, vol.84
, pp. 5035-5039
-
-
Tautenhahn, R.1
Patti, G.J.2
Rinehart, D.3
Siuzdak, G.4
-
65
-
-
84902174402
-
Metabolomic data streaming for biology-dependent data acquisition
-
Rinehart D, Johnson CH, Nguyen T, Ivanisevic J, Benton HP, et al. 2014. Metabolomic data streaming for biology-dependent data acquisition. Nat. Biotechnol. 32:524-27
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 524-527
-
-
Rinehart, D.1
Johnson, C.H.2
Nguyen, T.3
Ivanisevic, J.4
Benton, H.P.5
-
66
-
-
84887737912
-
OpenMSI: A high-performance webbased platform for mass spectrometry imaging
-
Rübel O, Greiner A, Cholia S, Louie K, Bethel EW, et al. 2013. OpenMSI: A high-performance webbased platform for mass spectrometry imaging. Anal. Chem. 85:10354-61
-
(2013)
Anal. Chem.
, vol.85
, pp. 10354-10361
-
-
Rübel, O.1
Greiner, A.2
Cholia, S.3
Louie, K.4
Bethel, E.W.5
-
67
-
-
84951909129
-
An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses
-
Fischer CR, Ruebel O, Bowen BP. 2016. An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses. Arch. Biochem. Biophys. 589:18-26
-
(2016)
Arch. Biochem. Biophys.
, vol.589
, pp. 18-26
-
-
Fischer, C.R.1
Ruebel, O.2
Bowen, B.P.3
-
68
-
-
84923858672
-
APP: An Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools
-
Malm E, Srivastava V, Sundqvist G, Bulone V. 2014. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools. BMC Bioinform. 15:441
-
(2014)
BMC Bioinform.
, vol.15
, pp. 441
-
-
Malm, E.1
Srivastava, V.2
Sundqvist, G.3
Bulone, V.4
-
69
-
-
84867441831
-
Cloud parallel processing of tandem mass spectrometry based proteomics data
-
Mohammed Y, Mostovenko E, Henneman AA, Marissen RJ, Deelder AM, Palmblad M. 2012. Cloud parallel processing of tandem mass spectrometry based proteomics data. J. Proteome Res. 11:5101-8
-
(2012)
J. Proteome Res.
, vol.11
, pp. 5101-5108
-
-
Mohammed, Y.1
Mostovenko, E.2
Henneman, A.A.3
Marissen, R.J.4
Deelder, A.M.5
Palmblad, M.6
-
70
-
-
84893419172
-
ProteoCloud: A full-featured open source proteomics cloud computing pipeline
-
Muth T, Peters J, Blackburn J, Rapp E, Martens L. 2013. ProteoCloud: A full-featured open source proteomics cloud computing pipeline. J. Proteomics 88:104-8
-
(2013)
J. Proteomics
, vol.88
, pp. 104-108
-
-
Muth, T.1
Peters, J.2
Blackburn, J.3
Rapp, E.4
Martens, L.5
-
71
-
-
84948987628
-
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
-
Deutsch EW, Mendoza L, Shteynberg D, Slagel J, Sun Z,Moritz RL. 2015. Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. Proteom. Clin. Appl. 9:745-54
-
(2015)
Proteom. Clin. Appl.
, vol.9
, pp. 745-754
-
-
Deutsch, E.W.1
Mendoza, L.2
Shteynberg, D.3
Slagel, J.4
Sun, Z.5
Moritz, R.L.6
-
72
-
-
84921896437
-
Processing shotgun proteomics data on the Amazon Cloud with the Trans-Proteomic Pipeline
-
Slagel J, Mendoza L, Shteynberg D, Deutsch EW, Moritz RL. 2015. Processing shotgun proteomics data on the Amazon Cloud with the Trans-Proteomic Pipeline. Mol. Cell. Proteom. 14:399-404
-
(2015)
Mol. Cell. Proteom.
, vol.14
, pp. 399-404
-
-
Slagel, J.1
Mendoza, L.2
Shteynberg, D.3
Deutsch, E.W.4
Moritz, R.L.5
-
73
-
-
70350217754
-
Proteomics data repositories
-
Riffle M, Eng JK. 2009. Proteomics data repositories. Proteomics 9:4653-63
-
(2009)
Proteomics
, vol.9
, pp. 4653-4663
-
-
Riffle, M.1
Eng, J.K.2
-
74
-
-
84920070787
-
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
-
Perez-Riverol Y, Alpi E, Wang R, Hermjakob H, Vizcaíno JA. 2015. Making proteomics data accessible and reusable: current state of proteomics databases and repositories. Proteomics 15:930-50
-
(2015)
Proteomics
, vol.15
, pp. 930-950
-
-
Perez-Riverol, Y.1
Alpi, E.2
Wang, R.3
Hermjakob, H.4
Vizcaíno, J.A.5
-
76
-
-
0021508912
-
Two-dimensional separations: Concept and promise
-
Giddings JC. 1984. Two-dimensional separations: concept and promise. Anal. Chem. 56:1258A-70A
-
(1984)
Anal. Chem.
, vol.56
, pp. 1258A-1270A
-
-
Giddings, J.C.1
-
77
-
-
33645526350
-
Accessible proteomics space and its implications for peak capacity for zero-, one-and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry
-
Frahm JL, Howard BE,Heber S, MuddimanDC. 2006. Accessible proteomics space and its implications for peak capacity for zero-, one-and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. J. Mass Spectrom. 41:281-88
-
(2006)
J. Mass Spectrom.
, vol.41
, pp. 281-288
-
-
Frahm, J.L.1
Howard, B.E.2
Heber, S.3
Muddiman, D.C.4
-
79
-
-
51949090818
-
Assessing the dynamic range and peak capacity of nanoflow LC-FAIMS-MSon an ion trapmass spectrometer for proteomics
-
Canterbury JD, Yi X, HoopmannMR, MacCoss MJ. 2008. Assessing the dynamic range and peak capacity of nanoflow LC-FAIMS-MSon an ion trapmass spectrometer for proteomics. Anal. Chem. 80:6888-97
-
(2008)
Anal. Chem.
, vol.80
, pp. 6888-6897
-
-
Canterbury, J.D.1
Yi, X.2
Hoopmann, M.R.3
MacCoss, M.J.4
-
80
-
-
84866023726
-
Peak capacity in differential mobility spectrometry: Effects of transport gas and gas modifiers
-
Schneider B, Nazarov E, Covey T. 2012. Peak capacity in differential mobility spectrometry: effects of transport gas and gas modifiers. Int. J. Ion Mobil. Spectrom. 15:141-50
-
(2012)
Int. J. Ion Mobil. Spectrom.
, vol.15
, pp. 141-150
-
-
Schneider, B.1
Nazarov, E.2
Covey, T.3
-
81
-
-
33846217403
-
Assessing the peak capacity of IMS-IMS separations of tryptic peptide ions in He at 300 K
-
Merenbloom SI, Bohrer BC, Koeniger SL, Clemmer DE. 2007. Assessing the peak capacity of IMS-IMS separations of tryptic peptide ions in He at 300 K. Anal. Chem. 79:515-22
-
(2007)
Anal. Chem.
, vol.79
, pp. 515-522
-
-
Merenbloom, S.I.1
Bohrer, B.C.2
Koeniger, S.L.3
Clemmer, D.E.4
-
82
-
-
84876905112
-
The influence of drift gas composition on the separation mechanism in traveling wave ion mobility spectrometry: Insight from electrodynamic simulations
-
May JC, McLean JA. 2013. The influence of drift gas composition on the separation mechanism in traveling wave ion mobility spectrometry: insight from electrodynamic simulations. Int. J. Ion Mobil. Spectrom. 16:85-94
-
(2013)
Int. J. Ion Mobil. Spectrom.
, vol.16
, pp. 85-94
-
-
May, J.C.1
McLean, J.A.2
-
83
-
-
84961288989
-
Ion mobility-mass spectrometry: Time-dispersive instrumentation
-
May JC, McLean JA. 2015. Ion mobility-mass spectrometry: time-dispersive instrumentation. Anal. Chem. 87:1422-36
-
(2015)
Anal. Chem.
, vol.87
, pp. 1422-1436
-
-
May, J.C.1
McLean, J.A.2
-
84
-
-
84942192298
-
Theoretical evaluation of peak capacity improvements by use of liquid chromatography combined with drift tube ion mobility-mass spectrometry
-
Causon TJ, Hann S. 2015. Theoretical evaluation of peak capacity improvements by use of liquid chromatography combined with drift tube ion mobility-mass spectrometry. J. Chromatogr. A 1416:47-56
-
(2015)
J. Chromatogr. A
, vol.1416
, pp. 47-56
-
-
Causon, T.J.1
Hann, S.2
-
86
-
-
20444445469
-
Theory of peak capacity in gradient elution
-
Neue UD. 2005. Theory of peak capacity in gradient elution. J. Chromatogr. A 1079:153-61
-
(2005)
J. Chromatogr. A
, vol.1079
, pp. 153-161
-
-
Neue, U.D.1
-
87
-
-
39749086470
-
Peak capacity in unidimensional chromatography
-
Neue UD. 2008. Peak capacity in unidimensional chromatography. J. Chromatogr. A 1184:107-30
-
(2008)
J. Chromatogr. A
, vol.1184
, pp. 107-130
-
-
Neue, U.D.1
-
88
-
-
0028875425
-
Comprehensive three-dimensional separation of peptides using size exclusion chromatography/reversed phase liquid chromatography/optically gated capillary zone electrophoresis
-
Moore AW, Jorgenson JW. 1995. Comprehensive three-dimensional separation of peptides using size exclusion chromatography/reversed phase liquid chromatography/optically gated capillary zone electrophoresis. Anal. Chem. 67:3456-63
-
(1995)
Anal. Chem.
, vol.67
, pp. 3456-3463
-
-
Moore, A.W.1
Jorgenson, J.W.2
-
89
-
-
70349326555
-
On-chip technologies for multidimensional separations
-
Tia S, Herr AE. 2009. On-chip technologies for multidimensional separations. Lab. Chip 9:2524-36
-
(2009)
Lab. Chip
, vol.9
, pp. 2524-2536
-
-
Tia, S.1
Herr, A.E.2
-
90
-
-
0033565981
-
High-mass-measurement accuracy and 100 sequence coverage of enzymatically digested bovine serum albumin from an ESI-FTICR mass spectrum
-
Bruce JE, Anderson GA, Wen J, Harkewicz R, Smith RD. 1999. High-mass-measurement accuracy and 100 sequence coverage of enzymatically digested bovine serum albumin from an ESI-FTICR mass spectrum. Anal. Chem. 71:2595-99
-
(1999)
Anal. Chem.
, vol.71
, pp. 2595-2599
-
-
Bruce, J.E.1
Anderson, G.A.2
Wen, J.3
Harkewicz, R.4
Smith, R.D.5
-
91
-
-
84929004305
-
High-speed MALDI MS/MS imaging mass spectrometry using continuous raster sampling
-
Prentice BM, Chumbley CW, Caprioli RM. 2015. High-speed MALDI MS/MS imaging mass spectrometry using continuous raster sampling. J. Mass Spectrom. 50:703-10
-
(2015)
J. Mass Spectrom.
, vol.50
, pp. 703-710
-
-
Prentice, B.M.1
Chumbley, C.W.2
Caprioli, R.M.3
-
92
-
-
76749109003
-
On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry
-
Stauber J, MacAleese L, Franck J, Claude E, Snel M, et al. 2010. On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry. J. Am. Soc. Mass Spectrom. 21:338-47
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 338-347
-
-
Stauber, J.1
MacAleese, L.2
Franck, J.3
Claude, E.4
Snel, M.5
-
93
-
-
84863954470
-
Exploring three-dimensional matrixassisted laser desorption/ionization imaging mass spectrometry data: Three-dimensional spatial segmentation of mouse kidney
-
Trede D, Schiffler S, BeckerM,Wirtz S, Steinhorst K, et al. 2012. Exploring three-dimensional matrixassisted laser desorption/ionization imaging mass spectrometry data: three-dimensional spatial segmentation of mouse kidney. Anal. Chem. 84:6079-87
-
(2012)
Anal. Chem.
, vol.84
, pp. 6079-6087
-
-
Trede, D.1
Schiffler, S.2
Becker, M.3
Wirtz, S.4
Steinhorst, K.5
-
94
-
-
78650737804
-
Advances in structure elucidation of small molecules using mass spectrometry
-
Kind T, Fiehn O. 2010. Advances in structure elucidation of small molecules using mass spectrometry. Bioanal. Rev. 2:23-60
-
(2010)
Bioanal. Rev.
, vol.2
, pp. 23-60
-
-
Kind, T.1
Fiehn, O.2
-
95
-
-
34247163207
-
Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
-
Kind T, Fiehn O. 2007. Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinform. 8:1-20
-
(2007)
BMC Bioinform.
, vol.8
, pp. 1-20
-
-
Kind, T.1
Fiehn, O.2
-
96
-
-
0038574979
-
Ion suppression in mass spectrometry
-
Annesley TM. 2003. Ion suppression in mass spectrometry. Clin. Chem. 49:1041-44
-
(2003)
Clin. Chem.
, vol.49
, pp. 1041-1044
-
-
Annesley, T.M.1
-
97
-
-
33646043166
-
Truly "exact" mass: Elemental composition can be determined uniquely from molecular mass measurement at-0.1 mDa accuracy for molecules up to-500 da
-
Kim S, Rodgers RP, Marshall AG. 2006. Truly "exact" mass: elemental composition can be determined uniquely from molecular mass measurement at-0.1 mDa accuracy for molecules up to-500 Da. Int. J. Mass Spectrom. 251:260-65
-
(2006)
Int. J. Mass Spectrom.
, vol.251
, pp. 260-265
-
-
Kim, S.1
Rodgers, R.P.2
Marshall, A.G.3
-
98
-
-
79952128461
-
Parts-per-billionFourier transform ion cyclotron resonance mass measurement accuracy with a "walking" calibration equation
-
Savory JJ, KaiserNK,McKennaAM,Xian F, BlakneyGT, et al. 2011. Parts-per-billionFourier transform ion cyclotron resonance mass measurement accuracy with a "walking" calibration equation. Anal. Chem. 83:1732-36
-
(2011)
Anal. Chem.
, vol.83
, pp. 1732-1736
-
-
Savory, J.J.1
Kaiser, N.K.2
McKenna, A.M.3
Xian, F.4
Blakney, G.T.5
-
99
-
-
55849122999
-
Increasing the mass accuracy of high-resolution LC-MS data using background ions-A case study on the LTQ-Orbitrap
-
Scheltema RA, Kamleh A, Wildridge D, Ebikeme C, Watson DG, et al. 2008. Increasing the mass accuracy of high-resolution LC-MS data using background ions-a case study on the LTQ-Orbitrap. Proteomics 8:4647-56
-
(2008)
Proteomics
, vol.8
, pp. 4647-4656
-
-
Scheltema, R.A.1
Kamleh, A.2
Wildridge, D.3
Ebikeme, C.4
Watson, D.G.5
-
100
-
-
79955563087
-
Mass spectrometry and informatics: Distribution of molecules in the PubChem database and general requirements for mass accuracy in surface analysis
-
Green FM, Gilmore IS, Seah MP. 2011. Mass spectrometry and informatics: distribution of molecules in the PubChem database and general requirements for mass accuracy in surface analysis. Anal. Chem. 83:3239-43
-
(2011)
Anal. Chem.
, vol.83
, pp. 3239-3243
-
-
Green, F.M.1
Gilmore, I.S.2
Seah, M.P.3
-
101
-
-
80052510666
-
Examining troughs in the mass distribution of all theoretically possible tryptic peptides
-
Nefedov AV, Mitra I, Brasier AR, Sadygov RG. 2011. Examining troughs in the mass distribution of all theoretically possible tryptic peptides. J. Proteome Res. 10:4150-57
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4150-4157
-
-
Nefedov, A.V.1
Mitra, I.2
Brasier, A.R.3
Sadygov, R.G.4
-
103
-
-
84876099509
-
Analysis of tissue specimens bymatrix-assisted laser desorption/ionization imaging mass spectrometry in biological and clinical research
-
Norris JL, Caprioli RM. 2013. Analysis of tissue specimens bymatrix-assisted laser desorption/ionization imaging mass spectrometry in biological and clinical research. Chem. Rev. 113:2309-42
-
(2013)
Chem. Rev.
, vol.113
, pp. 2309-2342
-
-
Norris, J.L.1
Caprioli, R.M.2
-
105
-
-
85027955924
-
Three-dimensional imaging of lipids and metabolites in tissues by nanospray desorption electrospray ionization mass spectrometry
-
Lanekoff I, Burnum-Johnson K, Thomas M, Cha J, Dey S, et al. 2015. Three-dimensional imaging of lipids and metabolites in tissues by nanospray desorption electrospray ionization mass spectrometry. Anal. Bioanal. Chem. 407:2063-71
-
(2015)
Anal. Bioanal. Chem.
, vol.407
, pp. 2063-2071
-
-
Lanekoff, I.1
Burnum-Johnson, K.2
Thomas, M.3
Cha, J.4
Dey, S.5
-
106
-
-
84908065158
-
Application of desorption electrospray ionization mass spectrometry imaging in breast cancer margin analysis
-
Calligaris D, Caragacianu D, Liu X, Norton I, Thompson CJ, et al. 2014. Application of desorption electrospray ionization mass spectrometry imaging in breast cancer margin analysis. PNAS 111:15184-89
-
(2014)
PNAS
, vol.111
, pp. 15184-15189
-
-
Calligaris, D.1
Caragacianu, D.2
Liu, X.3
Norton, I.4
Thompson, C.J.5
-
107
-
-
5444250387
-
Applications of a traveling wave-based radio-frequency-only stacked ring ion guide
-
Giles K, Pringle SD, Worthington KR, Little D, Wildgoose JL, Bateman RH. 2004. Applications of a traveling wave-based radio-frequency-only stacked ring ion guide. Rapid Commun. Mass Spectrom. 18:2401-14
-
(2004)
Rapid Commun. Mass Spectrom.
, vol.18
, pp. 2401-2414
-
-
Giles, K.1
Pringle, S.D.2
Worthington, K.R.3
Little, D.4
Wildgoose, J.L.5
Bateman, R.H.6
-
108
-
-
34250713877
-
Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures
-
Baker ES, Clowers BH, Li F, Tang K, Tolmachev AV, et al. 2007. Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures. J. Am. Soc. Mass Spectrom. 18:1176-87
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1176-1187
-
-
Baker, E.S.1
Clowers, B.H.2
Li, F.3
Tang, K.4
Tolmachev, A.V.5
-
109
-
-
84857494184
-
The use of mass defect in modern mass spectrometry
-
Sleno L. 2012. The use of mass defect in modern mass spectrometry. J. Mass Spectrom. 47(2):226-36
-
(2012)
J. Mass Spectrom.
, vol.47
, Issue.2
, pp. 226-236
-
-
Sleno, L.1
-
110
-
-
0001261561
-
Amass scale based onCH2 =14.0000 for high resolutionmass spectrometry of organic compounds
-
Kendrick E. 1963.Amass scale based onCH2 =14.0000 for high resolutionmass spectrometry of organic compounds. Anal. Chem. 35:2146-54
-
(1963)
Anal. Chem.
, vol.35
, pp. 2146-2154
-
-
Kendrick, E.1
-
111
-
-
0035472251
-
Kendrick mass defect spectrum: A compact visual analysis for ultrahigh-resolution broadband mass spectra
-
Hughey CA,HendricksonCL, RodgersRP, Marshall AG, Qian K. 2001. Kendrick mass defect spectrum: A compact visual analysis for ultrahigh-resolution broadband mass spectra. Anal. Chem. 73:4676-81
-
(2001)
Anal. Chem.
, vol.73
, pp. 4676-4681
-
-
Hughey, C.A.1
Hendrickson, C.L.2
Rodgers, R.P.3
Marshall, A.G.4
Qian, K.5
-
112
-
-
1642494964
-
Petroleomics: The next grand challenge for chemical analysis
-
Marshall AG, Rodgers RP. 2004. Petroleomics: The next grand challenge for chemical analysis. Acc. Chem. Res. 37:53-59
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 53-59
-
-
Marshall, A.G.1
Rodgers, R.P.2
-
113
-
-
77952527757
-
Method for the identification of lipid classes based on referenced Kendrick mass analysis
-
Lerno LA, German JB, Lebrilla CB. 2010. Method for the identification of lipid classes based on referenced Kendrick mass analysis. Anal. Chem. 82:4236-45
-
(2010)
Anal. Chem.
, vol.82
, pp. 4236-4245
-
-
Lerno, L.A.1
German, J.B.2
Lebrilla, C.B.3
-
114
-
-
58149209843
-
Determination ofmonoisotopicmasses and ion populations for large biomolecules from resolved isotopic distributions
-
SenkoMW, Beu SC, McLafferty FW. 1995. Determination ofmonoisotopicmasses and ion populations for large biomolecules from resolved isotopic distributions. J. Am. Soc. Mass Spectrom. 6:229-33
-
(1995)
J. Am. Soc. Mass Spectrom.
, vol.6
, pp. 229-233
-
-
Senko, M.W.1
Beu, S.C.2
McLafferty, F.W.3
-
115
-
-
0037246063
-
The protein information resource
-
Wu CH, Yeh L-SL, Huang H, Arminski L, Castro-Alvear J, et al. 2003. The Protein Information Resource. Nucleic Acids Res. 31:345-47
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 345-347
-
-
Wu, C.H.1
L-Sl, Y.2
Huang, H.3
Arminski, L.4
Castro-Alvear, J.5
-
116
-
-
54749157078
-
Averagine-scaling analysis and fragment ionmass defect labeling in peptide mass spectrometry
-
YaoX,Diego P, Ramos AA, Shi Y. 2008. Averagine-scaling analysis and fragment ionmass defect labeling in peptide mass spectrometry. Anal. Chem. 80:7383-91
-
(2008)
Anal. Chem.
, vol.80
, pp. 7383-7391
-
-
Yao, X.1
Diego, P.2
Ramos, A.A.3
Shi, Y.4
-
117
-
-
77957350690
-
Improving mass defect filters for human proteins
-
ToumiML, DesaireH. 2010. Improving mass defect filters for human proteins. J. Proteome Res. 9:5492-95
-
(2010)
J. Proteome Res.
, vol.9
, pp. 5492-5495
-
-
Toumi, M.L.1
Desaire, H.2
-
118
-
-
80052510666
-
Examining troughs in the mass distribution of all theoretically possible tryptic peptides
-
Nefedov AV, Mitra I, Brasier AR, Sadygov RG. 2011. Examining troughs in the mass distribution of all theoretically possible tryptic peptides. J. Proteome Res. 10:4150-57
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4150-4157
-
-
Nefedov, A.V.1
Mitra, I.2
Brasier, A.R.3
Sadygov, R.G.4
-
120
-
-
60149105834
-
Extractingmetabolite ions out of a matrix background by combined mass defect, neutral loss and isotope filtration
-
Cuyckens F, Hurkmans R, Castro-Perez JM, LeclercqL,Mortishire-SmithRJ. 2009. Extractingmetabolite ions out of a matrix background by combined mass defect, neutral loss and isotope filtration. Rapid Commun. Mass Spectrom. 23:327-32
-
(2009)
Rapid Commun. Mass Spectrom.
, vol.23
, pp. 327-332
-
-
Cuyckens, F.1
Hurkmans, R.2
Castro-Perez, J.M.3
Leclercq, L.4
Mortishire-Smith, R.J.5
-
121
-
-
67650494794
-
Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry
-
Zhang H, Zhang D, Ray K, Zhu M. 2009. Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry. J. Mass Spectrom. 44:999-1016
-
(2009)
J. Mass Spectrom.
, vol.44
, pp. 999-1016
-
-
Zhang, H.1
Zhang, D.2
Ray, K.3
Zhu, M.4
-
122
-
-
33748902567
-
Detection and characterization of metabolites in biological matrices using mass defect filtering of liquid chromatography/high resolution mass spectrometry data
-
Zhu M, Ma L, Zhang D, Ray K, ZhaoW, et al. 2006. Detection and characterization of metabolites in biological matrices using mass defect filtering of liquid chromatography/high resolution mass spectrometry data. Drug Metab. Dispos. 34:1722-33
-
(2006)
Drug Metab. Dispos.
, vol.34
, pp. 1722-1733
-
-
Zhu, M.1
Ma, L.2
Zhang, D.3
Ray, K.4
Zhao, W.5
-
123
-
-
70349632880
-
Analysis of quaternary ammonium compounds in estuarine sediments by LC-TOF-MS: Very high positive mass defects of alkylamine ions as powerful diagnostic tools for identification and structural elucidation
-
Li X, Brownawell BJ. 2009. Analysis of quaternary ammonium compounds in estuarine sediments by LC-TOF-MS: very high positive mass defects of alkylamine ions as powerful diagnostic tools for identification and structural elucidation. Anal. Chem. 81:7926-35
-
(2009)
Anal. Chem.
, vol.81
, pp. 7926-7935
-
-
Li, X.1
Brownawell, B.J.2
-
124
-
-
84855920106
-
Mass-defect filtering of isotope signatures to reveal the source of chlorinated palm oil contaminants
-
Nagy K, Sandoz L, Craft BD, Destaillats F. 2011. Mass-defect filtering of isotope signatures to reveal the source of chlorinated palm oil contaminants. Food Addit. Contam. A 28:1492-500
-
(2011)
Food Addit. Contam. A
, vol.28
, pp. 1492-1500
-
-
Nagy, K.1
Sandoz, L.2
Craft, B.D.3
Destaillats, F.4
-
126
-
-
84919952527
-
Large-scale collision cross-section profiling on a traveling wave ion mobility mass spectrometer
-
Lietz CB, Yu Q, Li L. 2014. Large-scale collision cross-section profiling on a traveling wave ion mobility mass spectrometer. J. Am. Soc. Mass Spectrom. 25:2009-19
-
(2014)
J. Am. Soc. Mass Spectrom.
, vol.25
, pp. 2009-2019
-
-
Lietz, C.B.1
Yu, Q.2
Li, L.3
-
127
-
-
84898910545
-
Ionmobility derived collision cross sections to support metabolomics applications
-
Paglia G, Williams JP, Menikarachchi L, Thompson JW, Tyldesley-Worster R, et al. 2014. Ionmobility derived collision cross sections to support metabolomics applications. Anal. Chem. 86:3985-93
-
(2014)
Anal. Chem.
, vol.86
, pp. 3985-3993
-
-
Paglia, G.1
Williams, J.P.2
Menikarachchi, L.3
Thompson, J.W.4
Tyldesley-Worster, R.5
-
130
-
-
84872852206
-
Ion mobility spectrometry-mass spectrometry (IMS-MS) of small molecules: Separating and assigning structures to ions
-
Lapthorn C, Pullen F, Chowdhry BZ. 2012. Ion mobility spectrometry-mass spectrometry (IMS-MS) of small molecules: separating and assigning structures to ions. Mass Spectrom. Rev. 32:43-71
-
(2012)
Mass Spectrom. Rev.
, vol.32
, pp. 43-71
-
-
Lapthorn, C.1
Pullen, F.2
Chowdhry, B.Z.3
-
131
-
-
84896933849
-
The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics
-
Lanucara F, Holman SW, Gray CJ, Eyers CE. 2014. The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics. Nat. Chem. 6:281-94
-
(2014)
Nat. Chem.
, vol.6
, pp. 281-294
-
-
Lanucara, F.1
Holman, S.W.2
Gray, C.J.3
Eyers, C.E.4
-
132
-
-
0000164710
-
Mass-mobility correlation of ions in view of new mobility data
-
Berant Z, Karpas Z. 1989. Mass-mobility correlation of ions in view of new mobility data. J. Am. Chem. Soc. 111:3819-24
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 3819-3824
-
-
Berant, Z.1
Karpas, Z.2
-
133
-
-
65049088697
-
Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples
-
Fenn LS, Kliman M, Mahsut A, Zhao SR,McLean JA. 2009. Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples. Anal. Bioanal. Chem. 394:235-44
-
(2009)
Anal. Bioanal. Chem.
, vol.394
, pp. 235-244
-
-
Fenn, L.S.1
Kliman, M.2
Mahsut, A.3
Zhao, S.R.4
McLean, J.A.5
-
134
-
-
84941553701
-
Ion mobility mass spectrometry for ion recovery and clean-up of MS and MS/MS spectra obtained from low abundance viral samples
-
Harvey D, Crispin M, Bonomelli C, Scrivens J. 2015. Ion mobility mass spectrometry for ion recovery and clean-up of MS and MS/MS spectra obtained from low abundance viral samples. J. Am. Soc. Mass Spectrom. 26:1754-67
-
(2015)
J. Am. Soc. Mass Spectrom.
, vol.26
, pp. 1754-1767
-
-
Harvey, D.1
Crispin, M.2
Bonomelli, C.3
Scrivens, J.4
-
135
-
-
84876909144
-
Ionmobility-mass correlation trend line separation of glycoprotein digests without deglycosylation
-
Li H, Bendiak B, SiemsW,GangD,HillHJr. 2013. Ionmobility-mass correlation trend line separation of glycoprotein digests without deglycosylation. Int. J. Ion Mobil. Spectrom. 16:105-15
-
(2013)
Int. J. Ion Mobil. Spectrom.
, vol.16
, pp. 105-115
-
-
Li, H.1
Bendiak, B.2
Siems, W.3
Gang, D.4
Hill, H.5
-
136
-
-
84894273930
-
Conformational ordering of biomolecules in the gas phase: Nitrogen collision cross sections measured on a prototype high resolution drift tube ion mobility-mass spectrometer
-
May JC, Goodwin CR, Lareau NM, Leaptrot KL, Morris CB, et al. 2014. Conformational ordering of biomolecules in the gas phase: nitrogen collision cross sections measured on a prototype high resolution drift tube ion mobility-mass spectrometer. Anal. Chem. 86:2107-16
-
(2014)
Anal. Chem.
, vol.86
, pp. 2107-2116
-
-
May, J.C.1
Goodwin, C.R.2
Lareau, N.M.3
Leaptrot, K.L.4
Morris, C.B.5
-
138
-
-
60249102576
-
Challenges and developments in tandem mass spectrometry based clinical metabolomics
-
Ceglarek U, Leichtle A, Brügel M, Kortz L, Brauer R, et al. 2009. Challenges and developments in tandem mass spectrometry based clinical metabolomics. Mol. Cell. Endocrinol. 301:266-71
-
(2009)
Mol. Cell. Endocrinol.
, vol.301
, pp. 266-271
-
-
Ceglarek, U.1
Leichtle, A.2
Brügel, M.3
Kortz, L.4
Brauer, R.5
-
139
-
-
84922463714
-
Autonomous metabolomics for rapid metabolite identification in global profiling
-
Benton HP, Ivanisevic J,MahieuNG, Kurczy ME, Johnson CH, et al. 2015. Autonomous metabolomics for rapid metabolite identification in global profiling. Anal. Chem. 87:884-91
-
(2015)
Anal. Chem.
, vol.87
, pp. 884-891
-
-
Benton, H.P.1
Ivanisevic, J.2
Mahieu, N.G.3
Kurczy, M.E.4
Johnson, C.H.5
-
142
-
-
84872574347
-
A view from above: Cloud plots to visualize global metabolomic data
-
Patti GJ, Tautenhahn R, Rinehart D, Cho K, Shriver LP, et al. 2013. A view from above: cloud plots to visualize global metabolomic data. Anal. Chem. 85:798-804
-
(2013)
Anal. Chem.
, vol.85
, pp. 798-804
-
-
Patti, G.J.1
Tautenhahn, R.2
Rinehart, D.3
Cho, K.4
Shriver, L.P.5
-
143
-
-
84904306550
-
Interactive XCMS online: Simplifying advanced metabolomic data processing and subsequent statistical analyses
-
Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, et al. 2014. Interactive XCMS online: simplifying advanced metabolomic data processing and subsequent statistical analyses. Anal. Chem. 86:6931-39
-
(2014)
Anal. Chem.
, vol.86
, pp. 6931-6939
-
-
Gowda, H.1
Ivanisevic, J.2
Johnson, C.H.3
Kurczy, M.E.4
Benton, H.P.5
-
144
-
-
0030221932
-
Quantitative analysis of multivariate data using artificial neural networks: A tutorial review and applications to the deconvolution of pyrolysis mass spectra
-
Goodacre R, Neal MJ, Kell DB. 1996. Quantitative analysis of multivariate data using artificial neural networks: A tutorial review and applications to the deconvolution of pyrolysis mass spectra. Zentralbl. Bakteriol. 284:516-39
-
(1996)
Zentralbl. Bakteriol.
, vol.284
, pp. 516-539
-
-
Goodacre, R.1
Neal, M.J.2
Kell, D.B.3
-
145
-
-
84897406795
-
Self-organizing maps: A versatile tool for the automatic analysis of untargeted imaging datasets
-
Franceschi P, Wehrens R. 2014. Self-organizing maps: A versatile tool for the automatic analysis of untargeted imaging datasets. Proteomics 14:853-61
-
(2014)
Proteomics
, vol.14
, pp. 853-861
-
-
Franceschi, P.1
Wehrens, R.2
-
146
-
-
38849104440
-
UPLC-ESI-TOFMS-based metabolomics and gene expression dynamics inspector self-organizing metabolomic maps as tools for understanding the cellular response to ionizing radiation
-
Patterson AD, Li H, Eichler GS, Krausz KW, Weinstein JN, et al. 2008. UPLC-ESI-TOFMS-based metabolomics and gene expression dynamics inspector self-organizing metabolomic maps as tools for understanding the cellular response to ionizing radiation. Anal. Chem. 80:665-74
-
(2008)
Anal. Chem.
, vol.80
, pp. 665-674
-
-
Patterson, A.D.1
Li, H.2
Eichler, G.S.3
Krausz, K.W.4
Weinstein, J.N.5
-
147
-
-
84903714301
-
Phenotypic mapping of metabolic profiles using self-organizing maps of high-dimensional mass spectrometry data
-
Goodwin CR, Sherrod SD, Marasco CC, Bachmann BO, Schramm-Sapyta N, et al. 2014. Phenotypic mapping of metabolic profiles using self-organizing maps of high-dimensional mass spectrometry data. Anal. Chem. 86:6563-71
-
(2014)
Anal. Chem.
, vol.86
, pp. 6563-6571
-
-
Goodwin, C.R.1
Sherrod, S.D.2
Marasco, C.C.3
Bachmann, B.O.4
Schramm-Sapyta, N.5
-
148
-
-
84930085856
-
Structuringmicrobial metabolic responses tomultiplexed stimuli via self-organizingmetabolomics maps
-
Goodwin CR,Covington BC,Derewacz DK,McNees CR,Wikswo JP, et al. 2015. Structuringmicrobial metabolic responses tomultiplexed stimuli via self-organizingmetabolomics maps. Chem. Biol. 22:661-70
-
(2015)
Chem. Biol.
, vol.22
, pp. 661-670
-
-
Goodwin, C.R.1
Covington, B.C.2
Derewacz, D.K.3
McNees, C.R.4
Wikswo, J.P.5
-
149
-
-
84954473917
-
Systems-wide high dimensional data acquisition and informatics using structural mass spectrometry strategies
-
Sherrod SD, McLean JA. 2016. Systems-wide high dimensional data acquisition and informatics using structural mass spectrometry strategies. Clin. Chem. 62:77-83
-
(2016)
Clin. Chem.
, vol.62
, pp. 77-83
-
-
Sherrod, S.D.1
McLean, J.A.2
|