-
1
-
-
38549093011
-
Lipid signalling in disease
-
CrossRef PubMed
-
Wymann, M. and Schneiter, R. (2008) Lipid signalling in disease. Nat. Rev. Mol. Cell Biol. 9, 162-176 CrossRef PubMed
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 162-176
-
-
Wymann, M.1
Schneiter, R.2
-
2
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
CrossRef PubMed
-
Forbes, S.A., Beare, D., Gunasekaran, P., Leung, K., Bindal, N., Boutselakis, H., Ding, M., Bamford, S., Cole, C., Ward, S. et al. (2015) COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805-D811 CrossRef PubMed
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D805-D811
-
-
Forbes, S.A.1
Beare, D.2
Gunasekaran, P.3
Leung, K.4
Bindal, N.5
Boutselakis, H.6
Ding, M.7
Bamford, S.8
Cole, C.9
Ward, S.10
-
3
-
-
11144358645
-
High frequency of mutations of the PIK3CA gene in human cancers
-
CrossRef PubMed
-
Samuels, Y., Wang, Z., Bardelli, A., Silliman, N., Ptak, J., Szabo, S., Yan, H., Gazdar, A., Powell, S.M., Riggins, G.J. et al. (2004) High frequency of mutations of the PIK3CA gene in human cancers. Science 304, 554 CrossRef PubMed
-
(2004)
Science
, vol.304
, pp. 554
-
-
Samuels, Y.1
Wang, Z.2
Bardelli, A.3
Silliman, N.4
Ptak, J.5
Szabo, S.6
Yan, H.7
Gazdar, A.8
Powell, S.M.9
Riggins, G.J.10
-
4
-
-
84860217431
-
The functions and regulation of the PTEN tumour suppressor
-
PubMed
-
Song, M.S., Salmena, L. and Pandolfi, P.P. (2012) The functions and regulation of the PTEN tumour suppressor. Nat. Rev. Mol. Cell Biol. 13, 283-296 PubMed
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 283-296
-
-
Song, M.S.1
Salmena, L.2
Pandolfi, P.P.3
-
5
-
-
84855807389
-
Conditional peripheral membrane proteins: Facing up to limited specificity
-
CrossRef PubMed
-
Moravcevic, K., Oxley, C.L. and Lemmon, M.A. (2012) Conditional peripheral membrane proteins: facing up to limited specificity. Structure 20, 15-27 CrossRef PubMed
-
(2012)
Structure
, vol.20
, pp. 15-27
-
-
Moravcevic, K.1
Oxley, C.L.2
Lemmon, M.A.3
-
6
-
-
33749836234
-
Phosphoinositides in cell regulation and membrane dynamics
-
CrossRef PubMed
-
Di Paolo, G. and De Camilli, P. (2006) Phosphoinositides in cell regulation and membrane dynamics. Nature 443, 651-657 CrossRef PubMed
-
(2006)
Nature
, vol.443
, pp. 651-657
-
-
Di Paolo, G.1
De Camilli, P.2
-
7
-
-
84905279186
-
Cellular and molecular interactions of phosphoinositides and peripheral proteins
-
CrossRef PubMed
-
Stahelin, R.V., Scott, J.L. and Frick, C.T. (2014) Cellular and molecular interactions of phosphoinositides and peripheral proteins. Chem. Phys. Lipids. 182, 3-18 CrossRef PubMed
-
(2014)
Chem. Phys. Lipids.
, vol.182
, pp. 3-18
-
-
Stahelin, R.V.1
Scott, J.L.2
Frick, C.T.3
-
8
-
-
0034544551
-
Interfacial enzyme kinetics at the phospholipid/water interface: Practical considerations
-
CrossRef PubMed
-
Deems, R.A. (2000) Interfacial enzyme kinetics at the phospholipid/water interface: practical considerations. Anal. Biochem. 287, 1-16 CrossRef PubMed
-
(2000)
Anal. Biochem.
, vol.287
, pp. 1-16
-
-
Deems, R.A.1
-
9
-
-
84888121509
-
Molecular determinants of PI3Kγ -mediated activation downstream of G-protein-coupled receptors (GPCRs)
-
CrossRef PubMed
-
Vadas, O., Dbouk, H.A., Shymanets, A., Perisic, O., Burke, J.E., Abi Saab, W.F., Khalil, B.D., Harteneck, C., Bresnick, A.R., Nuürnberg, B. et al. (2013) Molecular determinants of PI3Kγ -mediated activation downstream of G-protein-coupled receptors (GPCRs). Proc. Natl. Acad. Sci. U.S.A. 110, 18862-18867 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 18862-18867
-
-
Vadas, O.1
Dbouk, H.A.2
Shymanets, A.3
Perisic, O.4
Burke, J.E.5
Abi Saab, W.F.6
Khalil, B.D.7
Harteneck, C.8
Bresnick, A.R.9
Nuürnberg, B.10
-
10
-
-
84870750816
-
G protein-coupled receptor-mediated activation of p110β by Gβγ is required for cellular transformation and invasiveness
-
CrossRef PubMed
-
Dbouk, H.A., Vadas, O., Shymanets, A., Burke, J.E., Salamon, R.S., Khalil, B.D., Barrett, M.O., Waldo, G.L., Surve, C., Hsueh, C. et al. (2012) G protein-coupled receptor-mediated activation of p110β by Gβγ is required for cellular transformation and invasiveness. Sci. Signal. 5, ra89 CrossRef PubMed
-
(2012)
Sci. Signal.
, vol.5
, pp. ra89
-
-
Dbouk, H.A.1
Vadas, O.2
Shymanets, A.3
Burke, J.E.4
Salamon, R.S.5
Khalil, B.D.6
Barrett, M.O.7
Waldo, G.L.8
Surve, C.9
Hsueh, C.10
-
11
-
-
79953900818
-
Overcoming barriers to membrane protein structure determination
-
CrossRef PubMed
-
Bill, R.M., Henderson, P.J.F., Iwata, S., Kunji, E.R.S., Michel, H., Neutze, R., Newstead, S., Poolman, B., Tate, C.G., Vogel, H. et al. (2011) Overcoming barriers to membrane protein structure determination. Nat. Biotechnol. 29, 335-340 CrossRef PubMed
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 335-340
-
-
Bill, R.M.1
Henderson, P.J.F.2
Iwata, S.3
Kunji, E.R.S.4
Michel, H.5
Neutze, R.6
Newstead, S.7
Poolman, B.8
Tate, C.G.9
Vogel, H.10
-
12
-
-
84879967659
-
Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation
-
CrossRef PubMed
-
Schmidt, C., Zhou, M., Marriott, H., Morgner, N., Politis, A. and Robinson, C.V. (2013) Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation. Nat. Commun. 4, 1985 CrossRef PubMed
-
(2013)
Nat. Commun.
, vol.4
, pp. 1985
-
-
Schmidt, C.1
Zhou, M.2
Marriott, H.3
Morgner, N.4
Politis, A.5
Robinson, C.V.6
-
13
-
-
84908669645
-
Flexible membrane proteins: Functional dynamics captured by mass spectrometry
-
CrossRef
-
Zhou, M. and Robinson, C.V. (2014) Flexible membrane proteins: functional dynamics captured by mass spectrometry. Curr. Opin. Struct. Biol. 28C, 122-130 CrossRef
-
(2014)
Curr. Opin. Struct. Biol.
, vol.28 C
, pp. 122-130
-
-
Zhou, M.1
Robinson, C.V.2
-
14
-
-
84901936908
-
Membrane proteins bind lipids selectively to modulate their structure and function
-
CrossRef PubMed
-
Laganowsky, A., Reading, E., Allison, T.M., Ulmschneider, M.B., Degiacomi, M.T., Baldwin, A.J. and Robinson, C.V. (2014) Membrane proteins bind lipids selectively to modulate their structure and function. Nature 510, 172-175 CrossRef PubMed
-
(2014)
Nature
, vol.510
, pp. 172-175
-
-
Laganowsky, A.1
Reading, E.2
Allison, T.M.3
Ulmschneider, M.B.4
Degiacomi, M.T.5
Baldwin, A.J.6
Robinson, C.V.7
-
15
-
-
84879672979
-
Intrinsically disordered protein threads through the bacterial outer-membrane porin OmpF
-
CrossRef PubMed
-
Housden, N.G., Hopper, J.T.S, Lukoyanova, N., Rodriguez-Larrea, D., Wojdyla, J.A., Klein, A., Kaminska, R., Bayley, H., Saibil, H.R., Robinson, C.V. et al. (2013) Intrinsically disordered protein threads through the bacterial outer-membrane porin OmpF. Science 340, 1570-1574 CrossRef PubMed
-
(2013)
Science
, vol.340
, pp. 1570-1574
-
-
Housden, N.G.1
Hopper, J.T.S.2
Lukoyanova, N.3
Rodriguez-Larrea, D.4
Wojdyla, J.A.5
Klein, A.6
Kaminska, R.7
Bayley, H.8
Saibil, H.R.9
Robinson, C.V.10
-
16
-
-
84879000440
-
Mass spectrometry reveals synergistic effects of nucleotides, lipids, and drugs binding to a multidrug resistance efflux pump
-
CrossRef PubMed
-
Marcoux, J., Wang, S.C., Politis, A., Reading, E., Ma, J., Biggin, P.C., Zhou, M., Tao, H., Zhang, Q., Chang, G. et al. (2013) Mass spectrometry reveals synergistic effects of nucleotides, lipids, and drugs binding to a multidrug resistance efflux pump. Proc. Natl. Acad. Sci. U.S.A. 110, 9704-9709 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 9704-9709
-
-
Marcoux, J.1
Wang, S.C.2
Politis, A.3
Reading, E.4
Ma, J.5
Biggin, P.C.6
Zhou, M.7
Tao, H.8
Zhang, Q.9
Chang, G.10
-
17
-
-
84866328323
-
Mass spectrometry-from peripheral proteins to membrane motors
-
CrossRef PubMed
-
Morgner, N., Montenegro, F., Barrera, N.P. and Robinson, C.V. (2012) Mass spectrometry-from peripheral proteins to membrane motors. J. Mol. Biol. 423, 1-13 CrossRef PubMed
-
(2012)
J. Mol. Biol.
, vol.423
, pp. 1-13
-
-
Morgner, N.1
Montenegro, F.2
Barrera, N.P.3
Robinson, C.V.4
-
18
-
-
84906232914
-
Visualization of arrestin recruitment by a G-protein-coupled receptor
-
CrossRef PubMed
-
Shukla, A.K., Westfield, G.H., Xiao, K., Reis, R.I., Huang, L.-Y., Tripathi-Shukla, P., Qian, J., Li, S., Blanc, A., Oleskie, A.N. et al. (2014) Visualization of arrestin recruitment by a G-protein-coupled receptor. Nature 512, 218-222 CrossRef PubMed
-
(2014)
Nature
, vol.512
, pp. 218-222
-
-
Shukla, A.K.1
Westfield, G.H.2
Xiao, K.3
Reis, R.I.4
Huang, L.-Y.5
Tripathi-Shukla, P.6
Qian, J.7
Li, S.8
Blanc, A.9
Oleskie, A.N.10
-
19
-
-
84885421825
-
Conformational transition of membrane-associated terminally acylated HIV-1 Nef
-
CrossRef PubMed
-
Akgun, B., Satija, S., Nanda, H., Pirrone, G.F., Shi, X., Engen, J.R. and Kent, M.S. (2013) Conformational transition of membrane-associated terminally acylated HIV-1 Nef. Structure 21, 1822-1833 CrossRef PubMed
-
(2013)
Structure
, vol.21
, pp. 1822-1833
-
-
Akgun, B.1
Satija, S.2
Nanda, H.3
Pirrone, G.F.4
Shi, X.5
Engen, J.R.6
Kent, M.S.7
-
20
-
-
84863586032
-
Dynamics of a bacterial multidrug ABC transporter in the inward- and outward-facing conformations
-
CrossRef PubMed
-
Mehmood, S., Domene, C., Forest, E. and Jault, J.-M. (2012) Dynamics of a bacterial multidrug ABC transporter in the inward- and outward-facing conformations. Proc. Natl. Acad. Sci. U.S.A. 109, 10832-10836 CrossRef PubMed
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 10832-10836
-
-
Mehmood, S.1
Domene, C.2
Forest, E.3
Jault, J.-M.4
-
21
-
-
77954193701
-
Conformational analysis of membrane proteins in phospholipid bilayer nanodiscs by hydrogen exchange mass spectrometry
-
CrossRef PubMed
-
Hebling, C.M., Morgan, C.R., Stafford, D.W., Jorgenson, J.W., Rand, K.D. and Engen, J.R. (2010) Conformational analysis of membrane proteins in phospholipid bilayer nanodiscs by hydrogen exchange mass spectrometry. Anal. Chem. 82, 5415-5419 CrossRef PubMed
-
(2010)
Anal. Chem.
, vol.82
, pp. 5415-5419
-
-
Hebling, C.M.1
Morgan, C.R.2
Stafford, D.W.3
Jorgenson, J.W.4
Rand, K.D.5
Engen, J.R.6
-
22
-
-
76149083241
-
Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange
-
CrossRef PubMed
-
Zhang, X., Chien, E.Y.T., Chalmers, M.J., Pascal, B.D., Gatchalian, J., Stevens, R.C. and Griffin, P.R. (2010) Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange. Anal. Chem. 82, 1100-1108 CrossRef PubMed
-
(2010)
Anal. Chem.
, vol.82
, pp. 1100-1108
-
-
Zhang, X.1
Chien, E.Y.T.2
Chalmers, M.J.3
Pascal, B.D.4
Gatchalian, J.5
Stevens, R.C.6
Griffin, P.R.7
-
23
-
-
84922604138
-
Membranes serve as allosteric activators of phospholipase A2, enabling it to extract, bind, and hydrolyze phospholipid substrates
-
CrossRef PubMed
-
Mouchlis, V.D., Bucher, D., McCammon, J.A. and Dennis, E.A. (2015) Membranes serve as allosteric activators of phospholipase A2, enabling it to extract, bind, and hydrolyze phospholipid substrates. Proc. Natl. Acad. Sci. U.S.A. 112, E516-E525 CrossRef PubMed
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E516-E525
-
-
Mouchlis, V.D.1
Bucher, D.2
McCammon, J.A.3
Dennis, E.A.4
-
24
-
-
84872706788
-
Using hydrogen/deuterium exchange mass spectrometry to define the specific interactions of the phospholipase A2 superfamily with lipid substrates, inhibitors, and membranes
-
CrossRef PubMed
-
Cao, J., Burke, J.E. and Dennis, E.A. (2013) Using hydrogen/deuterium exchange mass spectrometry to define the specific interactions of the phospholipase A2 superfamily with lipid substrates, inhibitors, and membranes. J. Biol. Chem. 288, 1806-1813 CrossRef PubMed
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 1806-1813
-
-
Cao, J.1
Burke, J.E.2
Dennis, E.A.3
-
25
-
-
84871197457
-
Structural basis of specific interactions of Lp-PLA2 with HDL revealed by hydrogen deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Cao, J., Hsu, Y.-H., Li, S., Woods, V.L. and Dennis, E.A. (2013) Structural basis of specific interactions of Lp-PLA2 with HDL revealed by hydrogen deuterium exchange mass spectrometry. J. Lipid Res. 54, 127-133 CrossRef PubMed
-
(2013)
J. Lipid Res.
, vol.54
, pp. 127-133
-
-
Cao, J.1
Hsu, Y.-H.2
Li, S.3
Woods, V.L.4
Dennis, E.A.5
-
26
-
-
84866544615
-
Oncogenic mutations mimic and enhance dynamic events in the natural activation of phosphoinositide 3-kinase p110α (PIK3CA)
-
CrossRef PubMed
-
Burke, J.E., Perisic, O., Masson, G.R., Vadas, O. and Williams, R.L. (2012) Oncogenic mutations mimic and enhance dynamic events in the natural activation of phosphoinositide 3-kinase p110α (PIK3CA). Proc. Natl. Acad. Sci. U.S.A. 109, 15259-15264 CrossRef PubMed
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 15259-15264
-
-
Burke, J.E.1
Perisic, O.2
Masson, G.R.3
Vadas, O.4
Williams, R.L.5
-
27
-
-
80051488597
-
Dynamics of the phosphoinositide 3-kinase p110d interaction with p85a and membranes reveals aspects of regulation distinct from p110a
-
CrossRef PubMed
-
Burke, J.E., Vadas, O., Berndt, A., Finegan, T., Perisic, O. and Williams, R.L. (2011) Dynamics of the phosphoinositide 3-kinase p110d interaction with p85a and membranes reveals aspects of regulation distinct from p110a. Structure 19, 1127-1137 CrossRef PubMed
-
(2011)
Structure
, vol.19
, pp. 1127-1137
-
-
Burke, J.E.1
Vadas, O.2
Berndt, A.3
Finegan, T.4
Perisic, O.5
Williams, R.L.6
-
28
-
-
79958842003
-
Lipoprotein-associated phospholipase A(2) interacts with phospholipid vesicles via a surface-disposed hydrophobic α-helix
-
CrossRef PubMed
-
Cao, J., Hsu, Y.-H., Li, S., Woods, V.L. and Dennis, E.A. (2011) Lipoprotein-associated phospholipase A(2) interacts with phospholipid vesicles via a surface-disposed hydrophobic α-helix. Biochemistry 50, 5314-5321 CrossRef PubMed
-
(2011)
Biochemistry
, vol.50
, pp. 5314-5321
-
-
Cao, J.1
Hsu, Y.-H.2
Li, S.3
Woods, V.L.4
Dennis, E.A.5
-
29
-
-
69949177412
-
Localizing the membrane binding region of Group VIA Ca2+-independent phospholipase A2 using peptide amide hydrogen/deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Hsu, Y.-H., Burke, J.E., Li, S., Woods, V.L. and Dennis, E.A. (2009) Localizing the membrane binding region of Group VIA Ca2+-independent phospholipase A2 using peptide amide hydrogen/deuterium exchange mass spectrometry. J. Biol. Chem. 284, 23652-23661 CrossRef PubMed
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 23652-23661
-
-
Hsu, Y.-H.1
Burke, J.E.2
Li, S.3
Woods, V.L.4
Dennis, E.A.5
-
30
-
-
57649148807
-
A phospholipid substrate molecule residing in the membrane surface mediates opening of the lid region in group IVA cytosolic phospholipase A2
-
CrossRef PubMed
-
Burke, J.E., Hsu, Y.-H., Deems, R.A., Li, S., Woods, V.L. and Dennis, E.A. (2008) A phospholipid substrate molecule residing in the membrane surface mediates opening of the lid region in group IVA cytosolic phospholipase A2. J. Biol. Chem. 283, 31227-31236 CrossRef PubMed
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 31227-31236
-
-
Burke, J.E.1
Hsu, Y.-H.2
Deems, R.A.3
Li, S.4
Woods, V.L.5
Dennis, E.A.6
-
31
-
-
45749133451
-
Interaction of group IA phospholipase A2 with metal ions and phospholipid vesicles probed with deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Burke, J.E., Karbarz, M.J., Deems, R.A., Li, S., Woods, V.L. and Dennis, E.A. (2008) Interaction of group IA phospholipase A2 with metal ions and phospholipid vesicles probed with deuterium exchange mass spectrometry. Biochemistry 47, 6451-6459 CrossRef PubMed
-
(2008)
Biochemistry
, vol.47
, pp. 6451-6459
-
-
Burke, J.E.1
Karbarz, M.J.2
Deems, R.A.3
Li, S.4
Woods, V.L.5
Dennis, E.A.6
-
32
-
-
84924044826
-
Inhibition of pro-apoptotic BAX by a noncanonical interaction mechanism
-
CrossRef PubMed
-
Barclay, L.A., Wales, T.E., Garner, T.P., Wachter, F., Lee, S., Guerra, R.M., Stewart, M.L., Braun, C.R., Bird, G.H., Gavathiotis, E. et al. (2015) Inhibition of pro-apoptotic BAX by a noncanonical interaction mechanism. Mol. Cell 57, 873-886 CrossRef PubMed
-
(2015)
Mol. Cell
, vol.57
, pp. 873-886
-
-
Barclay, L.A.1
Wales, T.E.2
Garner, T.P.3
Wachter, F.4
Lee, S.5
Guerra, R.M.6
Stewart, M.L.7
Braun, C.R.8
Bird, G.H.9
Gavathiotis, E.10
-
33
-
-
0028067152
-
Protein stability parameters measured by hydrogen exchange
-
CrossRef PubMed
-
Bai, Y., Milne, J.S., Mayne, L. and Englander, S.W. (1994) Protein stability parameters measured by hydrogen exchange. Proteins 20, 4-14 CrossRef PubMed
-
(1994)
Proteins
, vol.20
, pp. 4-14
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
34
-
-
0027169975
-
Isotope effects in peptide group hydrogen exchange
-
CrossRef PubMed
-
Connelly, G.P., Bai, Y., Jeng, M.F. and Englander, S.W. (1993) Isotope effects in peptide group hydrogen exchange. Proteins 17, 87-92 CrossRef PubMed
-
(1993)
Proteins
, vol.17
, pp. 87-92
-
-
Connelly, G.P.1
Bai, Y.2
Jeng, M.F.3
Englander, S.W.4
-
35
-
-
33750320427
-
Hydrogen exchange and mass spectrometry: A historical perspective
-
CrossRef PubMed
-
Englander, S.W. (2006) Hydrogen exchange and mass spectrometry: a historical perspective. J. Am. Soc. Mass Spectrom. 17, 1481-1489 CrossRef PubMed
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1481-1489
-
-
Englander, S.W.1
-
36
-
-
33644761306
-
Hydrogen exchange mass spectrometry for the analysis of protein dynamics
-
CrossRef PubMed
-
Wales, T.E. and Engen, J.R. (2006) Hydrogen exchange mass spectrometry for the analysis of protein dynamics. Mass Spectrom. Rev. 25, 158-170 CrossRef PubMed
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 158-170
-
-
Wales, T.E.1
Engen, J.R.2
-
37
-
-
79951887389
-
Hydrogen exchange mass spectrometry for studying protein structure and dynamics
-
CrossRef PubMed
-
Konermann, L., Pan, J. and Liu, Y.-H. (2011) Hydrogen exchange mass spectrometry for studying protein structure and dynamics. Chem. Soc. Rev. 40, 1224-1234 CrossRef PubMed
-
(2011)
Chem. Soc. Rev.
, vol.40
, pp. 1224-1234
-
-
Konermann, L.1
Pan, J.2
Liu, Y.-H.3
-
38
-
-
84858277365
-
Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry-a review
-
CrossRef PubMed
-
Percy, A.J., Rey, M., Burns, K.M. and Schriemer, D.C. (2012) Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry-a review. Anal. Chim. Acta 721, 7-21 CrossRef PubMed
-
(2012)
Anal. Chim. Acta 721
, pp. 7-21
-
-
Percy, A.J.1
Rey, M.2
Burns, K.M.3
Schriemer, D.C.4
-
39
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
CrossRef PubMed
-
Bai, Y., Milne, J.S., Mayne, L. and Englander, S.W. (1993) Primary structure effects on peptide group hydrogen exchange. Proteins 17, 75-86 CrossRef PubMed
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
40
-
-
33749326831
-
Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis
-
CrossRef PubMed
-
Weis, D.D., Wales, T.E., Engen, J.R., Hotchko, M. and Eyck Ten, L.F. (2006) Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis. J. Am. Soc. Mass Spectrom. 17, 1498-1509 CrossRef PubMed
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1498-1509
-
-
Weis, D.D.1
Wales, T.E.2
Engen, J.R.3
Hotchko, M.4
Eyck Ten, L.F.5
-
41
-
-
73149115063
-
Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry
-
CrossRef PubMed
-
Chetty, P.S., Mayne, L., Lund-Katz, S., Stranz, D., Englander, S.W. and Phillips, M.C. (2009) Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 106, 19005-19010 CrossRef PubMed
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 19005-19010
-
-
Chetty, P.S.1
Mayne, L.2
Lund-Katz, S.3
Stranz, D.4
Englander, S.W.5
Phillips, M.C.6
-
42
-
-
84862564042
-
Protein dynamics viewed by hydrogen exchange
-
CrossRef PubMed
-
Skinner, J.J., Lim, W.K., Bédard, S., Black, B.E. and Englander, S.W. (2012) Protein dynamics viewed by hydrogen exchange. Protein Sci. 21, 996-1005 CrossRef PubMed
-
(2012)
Protein Sci.
, vol.21
, pp. 996-1005
-
-
Skinner, J.J.1
Lim, W.K.2
Bédard, S.3
Black, B.E.4
Englander, S.W.5
-
43
-
-
84862520497
-
Protein hydrogen exchange: Testing current models
-
CrossRef PubMed
-
Skinner, J.J., Lim, W.K., Bédard, S., Black, B.E. and Englander, S.W. (2012) Protein hydrogen exchange: testing current models. Protein Sci. 21, 987-995 CrossRef PubMed
-
(2012)
Protein Sci.
, vol.21
, pp. 987-995
-
-
Skinner, J.J.1
Lim, W.K.2
Bédard, S.3
Black, B.E.4
Englander, S.W.5
-
44
-
-
0027529263
-
Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation
-
CrossRef PubMed
-
Zhang, Z. and Smith, D.L. (1993) Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation. Protein Sci. 2, 522-531 CrossRef PubMed
-
(1993)
Protein Sci.
, vol.2
, pp. 522-531
-
-
Zhang, Z.1
Smith, D.L.2
-
45
-
-
84883426127
-
Pulsed hydrogen-deuterium exchange mass spectrometry probes conformational changes in amyloid beta (Aβ) peptide aggregation
-
CrossRef PubMed
-
Zhang, Y., Rempel, D.L., Zhang, J., Sharma, A.K., Mirica, L.M. and Gross, M.L. (2013) Pulsed hydrogen-deuterium exchange mass spectrometry probes conformational changes in amyloid beta (Aβ) peptide aggregation. Proc. Natl. Acad. Sci. U.S.A. 110, 14604-14609 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 14604-14609
-
-
Zhang, Y.1
Rempel, D.L.2
Zhang, J.3
Sharma, A.K.4
Mirica, L.M.5
Gross, M.L.6
-
46
-
-
84871830827
-
Pulsed hydrogen/deuterium exchange mass spectrometry for time-resolved membrane protein folding studies
-
CrossRef PubMed
-
Khanal, A., Pan, Y., Brown, L.S. and Konermann, L. (2012) Pulsed hydrogen/deuterium exchange mass spectrometry for time-resolved membrane protein folding studies. J. Mass Spectrom. 47, 1620-1626 CrossRef PubMed
-
(2012)
J. Mass Spectrom.
, vol.47
, pp. 1620-1626
-
-
Khanal, A.1
Pan, Y.2
Brown, L.S.3
Konermann, L.4
-
47
-
-
84908409604
-
Type 1 and type 2 scenarios in hydrogen exchange mass spectrometry studies on protein-ligand complexes
-
CrossRef PubMed
-
Konermann, L., Rodriguez, A.D. and Sowole, M.A. (2014) Type 1 and type 2 scenarios in hydrogen exchange mass spectrometry studies on protein-ligand complexes. Analyst 139, 6078-6087 CrossRef PubMed
-
(2014)
Analyst
, vol.139
, pp. 6078-6087
-
-
Konermann, L.1
Rodriguez, A.D.2
Sowole, M.A.3
-
48
-
-
84884575467
-
Time window expansion for HDX analysis of an intrinsically disordered protein
-
CrossRef PubMed
-
Goswami, D., Devarakonda, S., Chalmers, M.J., Pascal, B.D., Spiegelman, B.M. and Griffin, P.R. (2013) Time window expansion for HDX analysis of an intrinsically disordered protein. J. Am. Soc. Mass Spectrom. 24, 1584-1592 CrossRef PubMed
-
(2013)
J. Am. Soc. Mass Spectrom.
, vol.24
, pp. 1584-1592
-
-
Goswami, D.1
Devarakonda, S.2
Chalmers, M.J.3
Pascal, B.D.4
Spiegelman, B.M.5
Griffin, P.R.6
-
49
-
-
79952296442
-
Expansion of time window for mass spectrometric measurement of amide hydrogen/deuterium exchange reactions
-
CrossRef PubMed
-
Coales, S.J., E, S.Y., Lee, J.E., Ma, A., Morrow, J.A. and Hamuro, Y. (2010) Expansion of time window for mass spectrometric measurement of amide hydrogen/deuterium exchange reactions. Rapid Commun. Mass Spectrom. 24, 3585-3592 CrossRef PubMed
-
(2010)
Rapid Commun. Mass Spectrom.
, vol.24
, pp. 3585-3592
-
-
Coales, S.J.1
Lee, J.E.2
Ma, A.3
Morrow, J.A.4
Hamuro, Y.5
-
50
-
-
67650756766
-
Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry
-
CrossRef PubMed
-
Rand, K.D., Zehl, M., Jensen, O.N. and Jørgensen, T.J.D. (2009) Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry. Anal. Chem. 81, 5577-5584 CrossRef PubMed
-
(2009)
Anal. Chem.
, vol.81
, pp. 5577-5584
-
-
Rand, K.D.1
Zehl, M.2
Jensen, O.N.3
Jørgensen, T.J.D.4
-
51
-
-
69849083391
-
Hydrogen/deuterium exchange mass spectrometry with top-down electron capture dissociation for characterizing structural transitions of a 17 kDa protein
-
CrossRef PubMed
-
Pan, J., Han, J., Borchers, C.H. and Konermann, L. (2009) Hydrogen/deuterium exchange mass spectrometry with top-down electron capture dissociation for characterizing structural transitions of a 17 kDa protein. J. Am. Chem. Soc. 131, 12801-12808 CrossRef PubMed
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 12801-12808
-
-
Pan, J.1
Han, J.2
Borchers, C.H.3
Konermann, L.4
-
52
-
-
84908100824
-
Measuring the hydrogen/deuterium exchange of proteins at high spatial resolution by mass spectrometry: Overcoming gas-phase hydrogen/deuterium scrambling
-
CrossRef PubMed
-
Rand, K.D., Zehl, M. and Jørgensen, T.J.D. (2014) Measuring the hydrogen/deuterium exchange of proteins at high spatial resolution by mass spectrometry: overcoming gas-phase hydrogen/deuterium scrambling. Acc. Chem. Res. 47, 3018-3027 CrossRef PubMed
-
(2014)
Acc. Chem. Res.
, vol.47
, pp. 3018-3027
-
-
Rand, K.D.1
Zehl, M.2
Jørgensen, T.J.D.3
-
53
-
-
51549121010
-
High-speed and high-resolution UPLC separation at zero degrees celsius
-
CrossRef PubMed
-
Wales, T.E., Fadgen, K.E., Gerhardt, G.C. and Engen, J.R. (2008) High-speed and high-resolution UPLC separation at zero degrees celsius. Anal. Chem. 80, 6815-6820 CrossRef PubMed
-
(2008)
Anal. Chem.
, vol.80
, pp. 6815-6820
-
-
Wales, T.E.1
Fadgen, K.E.2
Gerhardt, G.C.3
Engen, J.R.4
-
54
-
-
84899870470
-
Aspartic protease nepenthesin-1 as a tool for digestion in hydrogen/deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Kadek, A., Mrazek, H., Halada, P., Rey, M., Schriemer, D.C. and Man, P. (2014) Aspartic protease nepenthesin-1 as a tool for digestion in hydrogen/deuterium exchange mass spectrometry. Anal. Chem. 86, 4287-4294 CrossRef PubMed
-
(2014)
Anal. Chem.
, vol.86
, pp. 4287-4294
-
-
Kadek, A.1
Mrazek, H.2
Halada, P.3
Rey, M.4
Schriemer, D.C.5
Man, P.6
-
55
-
-
84865511222
-
Pepsin immobilized on high-strength hybrid particles for continuous flow online digestion at 10,000 psi
-
CrossRef PubMed
-
Ahn, J., Jung, M.C., Wyndham, K., Yu, Y.Q. and Engen, JR. (2012) Pepsin immobilized on high-strength hybrid particles for continuous flow online digestion at 10,000 psi. Anal. Chem. 84, 7256-7262 CrossRef PubMed
-
(2012)
Anal. Chem.
, vol.84
, pp. 7256-7262
-
-
Ahn, J.1
Jung, M.C.2
Wyndham, K.3
Yu, Y.Q.4
Engen, J.R.5
-
56
-
-
73449142451
-
Investigating alternative acidic proteases for H/D exchange coupled to mass spectrometry: Plasmepsin 2 but not plasmepsin 4 is active under quenching conditions
-
CrossRef PubMed
-
Marcoux, J., Thierry, E., Vivès, C., Signor, L., Fieschi, F. and Forest, E. (2010) Investigating alternative acidic proteases for H/D exchange coupled to mass spectrometry: plasmepsin 2 but not plasmepsin 4 is active under quenching conditions. J. Am. Soc. Mass Spectrom. 21, 76-79 CrossRef PubMed
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 76-79
-
-
Marcoux, J.1
Thierry, E.2
Vivès, C.3
Signor, L.4
Fieschi, F.5
Forest, E.6
-
57
-
-
84885350132
-
Protein hydrogen exchange at residue resolution by proteolytic fragmentation mass spectrometry analysis
-
CrossRef PubMed
-
Kan, Z.-Y., Walters, B.T., Mayne, L. and Englander, S.W. (2013) Protein hydrogen exchange at residue resolution by proteolytic fragmentation mass spectrometry analysis. Proc. Natl. Acad. Sci. U.S.A. 110, 16438-16443 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 16438-16443
-
-
Kan, Z.-Y.1
Walters, B.T.2
Mayne, L.3
Englander, S.W.4
-
58
-
-
70349632883
-
H/D exchange and mass spectrometry in the studies of protein conformation and dynamics: Is there a need for a top-down approach?
-
Kaltashov, I.A., Bobst, C.E. and Abzalimov, R.R. (2009) H/D exchange and mass spectrometry in the studies of protein conformation and dynamics: is there a need for a top-down approach? Anal. Chem. 81, 7892-7899
-
(2009)
Anal. Chem.
, vol.81
, pp. 7892-7899
-
-
Kaltashov, I.A.1
Bobst, C.E.2
Abzalimov, R.R.3
-
59
-
-
84856276827
-
Automated hydrogen/deuterium exchange electron transfer dissociation high resolution mass spectrometry measured at single-amide resolution
-
CrossRef PubMed
-
Landgraf, R.R., Chalmers, M.J. and Griffin, P.R. (2012) Automated hydrogen/deuterium exchange electron transfer dissociation high resolution mass spectrometry measured at single-amide resolution. J. Am. Soc. Mass Spectrom. 23, 301-309 CrossRef PubMed
-
(2012)
J. Am. Soc. Mass Spectrom.
, vol.23
, pp. 301-309
-
-
Landgraf, R.R.1
Chalmers, M.J.2
Griffin, P.R.3
-
60
-
-
84883157439
-
Considerations in the analysis of hydrogen exchange mass spectrometry data
-
CrossRef PubMed
-
Wales, T.E., Eggertson, M.J. and Engen, J.R. (2013) Considerations in the analysis of hydrogen exchange mass spectrometry data. Methods Mol. Biol. 1007, 263-288 CrossRef PubMed
-
(2013)
Methods Mol. Biol.
, vol.1007
, pp. 263-288
-
-
Wales, T.E.1
Eggertson, M.J.2
Engen, J.R.3
-
61
-
-
0011676650
-
Assay of phospholipases A(2) and their inhibitors by kinetic analysis in the scooting mode
-
CrossRef PubMed
-
Jain, M.K., Yu, B.Z., Gelb, M.H. and Berg, O.G. (1992) Assay of phospholipases A(2) and their inhibitors by kinetic analysis in the scooting mode. Mediators Inflamm. 1, 85-100 CrossRef PubMed
-
(1992)
Mediators Inflamm
, vol.1
, pp. 85-100
-
-
Jain, M.K.1
Yu, B.Z.2
Gelb, M.H.3
Berg, O.G.4
-
62
-
-
0035860765
-
Interfacial positioning and stability of transmembrane peptides in lipid bilayers studied by combining hydrogen/deuterium exchange and mass spectrometry
-
CrossRef PubMed
-
Demmers, J.A., van Duijn, E., Haverkamp, J., Greathouse, D.V., Koeppe, R.E., Heck, A.J. and Killian, J.A. (2001) Interfacial positioning and stability of transmembrane peptides in lipid bilayers studied by combining hydrogen/deuterium exchange and mass spectrometry. J. Biol. Chem. 276, 34501-34508 CrossRef PubMed
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 34501-34508
-
-
Demmers, J.A.1
Van Duijn, E.2
Haverkamp, J.3
Greathouse, D.V.4
Koeppe, R.E.5
Heck, A.J.6
Killian, J.A.7
-
63
-
-
0034724213
-
Electrospray ionization mass spectrometry as a tool to analyze hydrogen/deuterium exchange kinetics of transmembrane peptides in lipid bilayers
-
CrossRef PubMed
-
Demmers, J.A., Haverkamp, J., Heck, A.J., Koeppe, R.E. and Killian, J.A. (2000) Electrospray ionization mass spectrometry as a tool to analyze hydrogen/deuterium exchange kinetics of transmembrane peptides in lipid bilayers. Proc. Natl. Acad. Sci. U.S.A. 97, 3189-3194 CrossRef PubMed
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 3189-3194
-
-
Demmers, J.A.1
Haverkamp, J.2
Heck, A.J.3
Koeppe, R.E.4
Killian, J.A.5
-
64
-
-
33947599164
-
Defining the interacting regions between apomyoglobin and lipid membrane by hydrogen/deuterium exchange coupled to mass spectrometry
-
CrossRef PubMed
-
Man, P., Montagner, C., Vernier, G., Dublet, B., Chenal, A., Forest, E. and Forge, V. (2007) Defining the interacting regions between apomyoglobin and lipid membrane by hydrogen/deuterium exchange coupled to mass spectrometry. J. Mol. Biol. 368, 464-472 CrossRef PubMed
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 464-472
-
-
Man, P.1
Montagner, C.2
Vernier, G.3
Dublet, B.4
Chenal, A.5
Forest, E.6
Forge, V.7
-
65
-
-
84923233768
-
The function of phosphatidylinositol 5-phosphate 4-kinase γ (PI5P4Kγ) explored using a specific inhibitor that targets the PI5P-binding site
-
CrossRef PubMed
-
Clarke, J.H., Giudici, M.L., Burke, J.E., Williams, R.L., Maloney, D.J., Marugan, J. and Irvine, R.F (2015) The function of phosphatidylinositol 5-phosphate 4-kinase γ (PI5P4Kγ ) explored using a specific inhibitor that targets the PI5P-binding site. Biochem. J. 466, 359-367 CrossRef PubMed
-
(2015)
Biochem. J.
, vol.466
, pp. 359-367
-
-
Clarke, J.H.1
Giudici, M.L.2
Burke, J.E.3
Williams, R.L.4
Maloney, D.J.5
Marugan, J.6
Irvine, R.F.7
-
66
-
-
84904098769
-
Changes in the Factor VIII C2 domain upon membrane binding determined by hydrogen-deuterium exchange MS
-
CrossRef PubMed
-
Pantazatos, D., Gessner, C.R., Woods, V.L. and Gilbert, G.E. (2014) Changes in the Factor VIII C2 domain upon membrane binding determined by hydrogen-deuterium exchange MS. Biochem. J. 461, 443-451 CrossRef PubMed
-
(2014)
Biochem. J.
, vol.461
, pp. 443-451
-
-
Pantazatos, D.1
Gessner, C.R.2
Woods, V.L.3
Gilbert, G.E.4
-
67
-
-
84901624474
-
Structures of PI4KIIIβ complexes show simultaneous recruitment of Rab11 and its effectors
-
CrossRef PubMed
-
Burke, J.E., Inglis, A.J., Perisic, O., Masson, G.R., McLaughlin, S.H., Rutaganira, F., Shokat, K.M. and Williams, R.L. (2014) Structures of PI4KIIIβ complexes show simultaneous recruitment of Rab11 and its effectors. Science 344, 1035-1038 CrossRef PubMed
-
(2014)
Science
, vol.344
, pp. 1035-1038
-
-
Burke, J.E.1
Inglis, A.J.2
Perisic, O.3
Masson, G.R.4
McLaughlin, S.H.5
Rutaganira, F.6
Shokat, K.M.7
Williams, R.L.8
-
68
-
-
84883742330
-
Vesicular and non-vesicular transport feed distinct glycosylation pathways in the Golgi
-
CrossRef PubMed
-
D'Angelo, G., Uemura, T., Chuang, C.-C., Polishchuk, E., Santoro, M., Ohvo-Rekilä, H., Sato, T., Di Tullio, G., Varriale, A., D'Auria, S. et al. (2013) Vesicular and non-vesicular transport feed distinct glycosylation pathways in the Golgi. Nature 501, 116-120 CrossRef PubMed
-
(2013)
Nature
, vol.501
, pp. 116-120
-
-
D'Angelo, G.1
Uemura, T.2
Chuang, C.-C.3
Polishchuk, E.4
Santoro, M.5
Ohvo-Rekilä, H.6
Sato, T.7
Di Tullio, G.8
Varriale, A.9
D'Auria, S.10
-
69
-
-
81055156662
-
Accessibility changes within diphtheria toxin T domain upon membrane penetration probed by hydrogen exchange and mass spectrometry
-
CrossRef PubMed
-
Man, P., Montagner, C., Vitrac, H., Kavan, D., Pichard, S., Gillet, D., Forest, E. and Forge, V. (2011) Accessibility changes within diphtheria toxin T domain upon membrane penetration probed by hydrogen exchange and mass spectrometry. J. Mol. Biol. 414, 123-134 CrossRef PubMed
-
(2011)
J. Mol. Biol.
, vol.414
, pp. 123-134
-
-
Man, P.1
Montagner, C.2
Vitrac, H.3
Kavan, D.4
Pichard, S.5
Gillet, D.6
Forest, E.7
Forge, V.8
-
70
-
-
67650540778
-
Location of inhibitors bound to group IVA phospholipase A2 determined by molecular dynamics and deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Burke, J.E., Babakhani, A., Gorfe, A.A., Kokotos, G., Li, S., Woods, Jr, V.L., McCammon, J.A. and Dennis, E.A. (2009) Location of inhibitors bound to group IVA phospholipase A2 determined by molecular dynamics and deuterium exchange mass spectrometry. J. Am. Chem. Soc. 131, 8083-8091 CrossRef PubMed
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 8083-8091
-
-
Burke, J.E.1
Babakhani, A.2
Gorfe, A.A.3
Kokotos, G.4
Li, S.5
Woods, V.L.6
McCammon, J.A.7
Dennis, E.A.8
-
71
-
-
44349145507
-
Calcium binding rigidifies the C2 domain and the intradomain interaction of GIVA phospholipase A2 as revealed by hydrogen/deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Hsu, Y.-H., Burke, J.E., Stephens, D.L., Deems, R.A., Li, S., Asmus, K.M., Woods, Jr, V.L. and Dennis, E.A. (2008) Calcium binding rigidifies the C2 domain and the intradomain interaction of GIVA phospholipase A2 as revealed by hydrogen/deuterium exchange mass spectrometry. J. Biol. Chem. 283, 9820-9827 CrossRef PubMed
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 9820-9827
-
-
Hsu, Y.-H.1
Burke, J.E.2
Stephens, D.L.3
Deems, R.A.4
Li, S.5
Asmus, K.M.6
Woods, V.L.7
Dennis, E.A.8
-
72
-
-
84879386607
-
PKCβ Phosphorylates PI3Kγ to activate it and release it from GPCR control
-
CrossRef PubMed
-
Walser, R., Burke, J.E., Gogvadze, E., Bohnacker, T., Zhang, X., Hess, D., Küenzi, P., Leitges, M., Hirsch, E., Williams, R.L. et al. (2013) PKCβ Phosphorylates PI3Kγ to activate it and release it from GPCR control. PLoS Biol. 11, e1001587 CrossRef PubMed
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001587
-
-
Walser, R.1
Burke, J.E.2
Gogvadze, E.3
Bohnacker, T.4
Zhang, X.5
Hess, D.6
Küenzi, P.7
Leitges, M.8
Hirsch, E.9
Williams, R.L.10
-
73
-
-
84874006435
-
Dynamic steps in receptor tyrosine kinase mediated activation of class IA phosphoinositide 3-kinases (PI3K) captured by H/D exchange (HDX-MS)
-
CrossRef PubMed
-
Burke, J.E. and Williams, R.L. (2013) Dynamic steps in receptor tyrosine kinase mediated activation of class IA phosphoinositide 3-kinases (PI3K) captured by H/D exchange (HDX-MS). Adv. Biol. Regul. 53, 97-110 CrossRef PubMed
-
(2013)
Adv. Biol. Regul.
, vol.53
, pp. 97-110
-
-
Burke, J.E.1
Williams, R.L.2
-
74
-
-
84921608353
-
Synergy in activating class i PI3Ks
-
CrossRef PubMed
-
Burke, J.E. and Williams, R.L. (2015) Synergy in activating class I PI3Ks. Trends Biochem. Sci. 40, 88-100 CrossRef PubMed
-
(2015)
Trends Biochem. Sci.
, vol.40
, pp. 88-100
-
-
Burke, J.E.1
Williams, R.L.2
-
75
-
-
77951621262
-
The emerging mechanisms of isoform-specific PI3K signalling
-
CrossRef PubMed
-
Vanhaesebroeck, B., Guillermet-Guibert, J., Graupera, M. and Bilanges, B. (2010) The emerging mechanisms of isoform-specific PI3K signalling. Nat. Rev. Mol. Cell Biol. 11, 329-341 CrossRef PubMed
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 329-341
-
-
Vanhaesebroeck, B.1
Guillermet-Guibert, J.2
Graupera, M.3
Bilanges, B.4
-
76
-
-
80054736907
-
Structural basis for activation and inhibition of class i phosphoinositide 3-kinases
-
CrossRef PubMed
-
Vadas, O., Burke, J.E., Zhang, X., Berndt, A. and Williams, R.L. (2011) Structural basis for activation and inhibition of class I phosphoinositide 3-kinases. Sci. Signal 4, 1-13 CrossRef PubMed
-
(2011)
Sci. Signal
, vol.4
, pp. 1-13
-
-
Vadas, O.1
Burke, J.E.2
Zhang, X.3
Berndt, A.4
Williams, R.L.5
-
77
-
-
79951993684
-
Structure of lipid kinase p110β/p85β elucidates an unusual SH2-domain-mediated inhibitory mechanism
-
CrossRef PubMed
-
Zhang, X., Vadas, O., Perisic, O., Anderson, K.E., Clark, J., Hawkins, P.T., Stephens, L.R. and Williams, R.L. (2011) Structure of lipid kinase p110β/p85β elucidates an unusual SH2-domain-mediated inhibitory mechanism. Mol. Cell 41, 567-578 CrossRef PubMed
-
(2011)
Mol. Cell
, vol.41
, pp. 567-578
-
-
Zhang, X.1
Vadas, O.2
Perisic, O.3
Anderson, K.E.4
Clark, J.5
Hawkins, P.T.6
Stephens, L.R.7
Williams, R.L.8
-
78
-
-
77249165113
-
The p110delta structure: Mechanisms for selectivity and potency of new PI(3)K inhibitors
-
CrossRef PubMed
-
Berndt, A., Miller, S., Williams, O., Le, D.D., Houseman, B.T., Pacold, J.I., Gorrec, F., Hon, W.C., Liu, Y., Rommel, C. et al. (2010) The p110delta structure: mechanisms for selectivity and potency of new PI(3)K inhibitors. Nat. Chem. Biol. 6, 244 CrossRef PubMed
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 244
-
-
Berndt, A.1
Miller, S.2
Williams, O.3
Le, D.D.4
Houseman, B.T.5
Pacold, J.I.6
Gorrec, F.7
Hon, W.C.8
Liu, Y.9
Rommel, C.10
-
79
-
-
70350126139
-
A frequent kinase domain mutation that changes the interaction between PI3Kalpha and the membrane
-
CrossRef PubMed
-
Mandelker, D., Gabelli, S., Schmidt-Kittler, O., Zhu, J., Cheong, I., Huang, C.H., Kinzler, K.W., Vogelstein, B. and Amzel, L.M. (2009) A frequent kinase domain mutation that changes the interaction between PI3Kalpha and the membrane. Proc. Natl. Acad. Sci. U.S.A. 106, 16996-17001 CrossRef PubMed
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16996-17001
-
-
Mandelker, D.1
Gabelli, S.2
Schmidt-Kittler, O.3
Zhu, J.4
Cheong, I.5
Huang, C.H.6
Kinzler, K.W.7
Vogelstein, B.8
Amzel, L.M.9
-
80
-
-
0033635157
-
Crystal structure and functional analysis of Ras binding to its effector phosphoinositide 3-kinase gamma
-
CrossRef PubMed
-
Pacold, M., Suire, S., Perisic, O., Lara-Gonzalez, S., Davis, C., Walker, E., Hawkins, P.T., Stephens, L., Eccleston, J.F., Williams, R.L. et al. (2000) Crystal structure and functional analysis of Ras binding to its effector phosphoinositide 3-kinase gamma. Cell 103, 931-943 CrossRef PubMed
-
(2000)
Cell
, vol.103
, pp. 931-943
-
-
Pacold, M.1
Suire, S.2
Perisic, O.3
Lara-Gonzalez, S.4
Davis, C.5
Walker, E.6
Hawkins, P.T.7
Stephens, L.8
Eccleston, J.F.9
Williams, R.L.10
-
81
-
-
0033634827
-
Structural determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin, and staurosporine
-
CrossRef PubMed
-
Walker, E., Pacold, M., Perisic, O., Stephens, L., Hawkins, P., Wymann, M.P. and Williams, R.L. (2000) Structural determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin, and staurosporine. Mol. Cell 6, 909-919 CrossRef PubMed
-
(2000)
Mol. Cell
, vol.6
, pp. 909-919
-
-
Walker, E.1
Pacold, M.2
Perisic, O.3
Stephens, L.4
Hawkins, P.5
Wymann, M.P.6
Williams, R.L.7
-
82
-
-
0033581886
-
Structural insights into phosphoinositide 3-kinase catalysis and signalling
-
CrossRef PubMed
-
Walker, E.H., Perisic, O., Ried, C., Stephens, L. and Williams, R.L. (1999) Structural insights into phosphoinositide 3-kinase catalysis and signalling. Nature 402, 313-320 CrossRef PubMed
-
(1999)
Nature
, vol.402
, pp. 313-320
-
-
Walker, E.H.1
Perisic, O.2
Ried, C.3
Stephens, L.4
Williams, R.L.5
-
83
-
-
77953896432
-
Cell signaling by receptor tyrosine kinases
-
CrossRef PubMed
-
Lemmon, M. and Schlessinger, J. (2010) Cell signaling by receptor tyrosine kinases. Cell 141, 1117-1134 CrossRef PubMed
-
(2010)
Cell
, vol.141
, pp. 1117-1134
-
-
Lemmon, M.1
Schlessinger, J.2
-
84
-
-
84886697478
-
P87 and p101 subunits are distinct regulators determining class IB PI3K specificity
-
CrossRef PubMed
-
Shymanets, A., Prajwal, P., Bucher, K., Beer-Hammer, S., Harteneck, C. and Nürnberg, B. (2013) p87 and p101 subunits are distinct regulators determining class IB PI3K specificity. J. Biol. Chem. 288, 31059-31068 CrossRef PubMed
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 31059-31068
-
-
Shymanets, A.1
Prajwal, P.2
Bucher, K.3
Beer-Hammer, S.4
Harteneck, C.5
Nürnberg, B.6
-
85
-
-
84908347335
-
Investigating the structure and dynamics of the PIK3CA wild-type and H1047R oncogenic mutant
-
CrossRef PubMed
-
Gkeka, P., Evangelidis, T., Pavlaki, M., Lazani, V., Christoforidis, S., Agianian, B. and Cournia, Z. (2014) Investigating the structure and dynamics of the PIK3CA wild-type and H1047R oncogenic mutant. PLoS Comput. Biol. 10, e1003895 CrossRef PubMed
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003895
-
-
Gkeka, P.1
Evangelidis, T.2
Pavlaki, M.3
Lazani, V.4
Christoforidis, S.5
Agianian, B.6
Cournia, Z.7
-
86
-
-
84896692766
-
Idelalisib and rituximab in relapsed chronic lymphocytic leukemia
-
CrossRef PubMed
-
Furman, R.R., Sharman, J.P., Coutre, S.E., Cheson, B.D., Pagel, J.M., Hillmen, P., Barrientos, J.C., Zelenetz, A.D., Kipps, T.J., Flinn, I. et al. (2014) Idelalisib and rituximab in relapsed chronic lymphocytic leukemia. N. Engl. J. Med. 370, 997-1007 CrossRef PubMed
-
(2014)
N. Engl. J. Med.
, vol.370
, pp. 997-1007
-
-
Furman, R.R.1
Sharman, J.P.2
Coutre, S.E.3
Cheson, B.D.4
Pagel, J.M.5
Hillmen, P.6
Barrientos, J.C.7
Zelenetz, A.D.8
Kipps, T.J.9
Flinn, I.10
-
87
-
-
84893249799
-
PI3K and cancer: Lessons, challenges and opportunities
-
CrossRef PubMed
-
Fruman, D.A. and Rommel, C. (2014) PI3K and cancer: lessons, challenges and opportunities. Nat. Rev. Drug Discov. 13, 140-156 CrossRef PubMed
-
(2014)
Nat. Rev. Drug Discov.
, vol.13
, pp. 140-156
-
-
Fruman, D.A.1
Rommel, C.2
-
88
-
-
84926430023
-
Integration of G protein alpha (Gα) signaling by the regulator of G protein signaling 14
-
CrossRef PubMed
-
Brown, N.E., Goswami, D., Branch, M.R., Ramineni, S., Ortlund, E.A., Griffin, P.R. and Hepler, J.R. (2015) Integration of G protein alpha (Gα) signaling by the regulator of G protein signaling 14. J. Biol. Chem. 290, 9037-9049 CrossRef PubMed
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 9037-9049
-
-
Brown, N.E.1
Goswami, D.2
Branch, M.R.3
Ramineni, S.4
Ortlund, E.A.5
Griffin, P.R.6
Hepler, J.R.7
-
89
-
-
80054081804
-
Ligand-dependent perturbation of the conformational ensemble for the GPCR β2 adrenergic receptor revealed by HDX
-
CrossRef PubMed
-
West, G.M., Chien, EYT, Katritch, V., Gatchalian, J., Chalmers, M.J., Stevens, R.C. and Griffin, P.R. (2011) Ligand-dependent perturbation of the conformational ensemble for the GPCR β2 adrenergic receptor revealed by HDX. Structure 19, 1424-1432 CrossRef PubMed
-
(2011)
Structure
, vol.19
, pp. 1424-1432
-
-
West, G.M.1
Eyt, C.2
Katritch, V.3
Gatchalian, J.4
Chalmers, M.J.5
Stevens, R.C.6
Griffin, P.R.7
-
90
-
-
80053357815
-
Conformational changes in the G protein Gs induced by the β2 adrenergic receptor
-
CrossRef PubMed
-
Chung, K.Y., Rasmussen, S.G.F., Liu, T., Li, S., DeVree, B.T., Chae, P.S., Calinski, D., Kobilka, B.K., Woods, Jr., V.L., Sunahara, R.K. et al. (2011) Conformational changes in the G protein Gs induced by the β2 adrenergic receptor. Nature 477, 611-615 CrossRef PubMed
-
(2011)
Nature
, vol.477
, pp. 611-615
-
-
Chung, K.Y.1
Rasmussen, S.G.F.2
Liu, T.3
Li, S.4
DeVree, B.T.5
Chae, P.S.6
Calinski, D.7
Kobilka, B.K.8
Woods, V.L.9
Sunahara, R.K.10
-
91
-
-
84896076495
-
A conformational investigation of propeptide binding to the integral membrane protein γ -glutamyl carboxylase using nanodisc hydrogen exchange mass spectrometry
-
CrossRef PubMed
-
Parker, C.H., Morgan, C.R., Rand, K.D., Engen, J.R., Jorgenson, J.W. and Stafford, D.W. (2014) A conformational investigation of propeptide binding to the integral membrane protein γ -glutamyl carboxylase using nanodisc hydrogen exchange mass spectrometry. Biochemistry 53, 1511-1520 CrossRef PubMed
-
(2014)
Biochemistry
, vol.53
, pp. 1511-1520
-
-
Parker, C.H.1
Morgan, C.R.2
Rand, K.D.3
Engen, J.R.4
Jorgenson, J.W.5
Stafford, D.W.6
-
92
-
-
84880620990
-
Membrane phospholipid bilayer as a determinant of monoacylglycerol lipase kinetic profile and conformational repertoire
-
CrossRef PubMed
-
Nasr, M.L., Shi, X., Bowman, A.L., Johnson, M., Zvonok, N., Janero, D.R., Vemuri, V.K., Wales, T.E., Engen, J.R., Makriyannis, A. et al. (2013) Membrane phospholipid bilayer as a determinant of monoacylglycerol lipase kinetic profile and conformational repertoire. Protein Sci. 22, 774-787 CrossRef PubMed
-
(2013)
Protein Sci.
, vol.22
, pp. 774-787
-
-
Nasr, M.L.1
Shi, X.2
Bowman, A.L.3
Johnson, M.4
Zvonok, N.5
Janero, D.R.6
Vemuri, V.K.7
Wales, T.E.8
Engen, J.R.9
Makriyannis, A.10
-
93
-
-
84928537872
-
Effective application of bicelles for conformational analysis of g protein-coupled receptors by hydrogen/deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Duc, N.M., Du, Y., Thorsen, T.S., Lee, S.Y., Zhang, C., Kato, H., Kobilka, B.K. and Chung, K.Y. (2015) Effective application of bicelles for conformational analysis of g protein-coupled receptors by hydrogen/deuterium exchange mass spectrometry. J. Am. Soc. Mass Spectrom. 26, 808-817 CrossRef PubMed
-
(2015)
J. Am. Soc. Mass Spectrom.
, vol.26
, pp. 808-817
-
-
Duc, N.M.1
Du, Y.2
Thorsen, T.S.3
Lee, S.Y.4
Zhang, C.5
Kato, H.6
Kobilka, B.K.7
Chung, K.Y.8
-
94
-
-
84900798422
-
Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2
-
CrossRef PubMed
-
Khan, A.G., Whidby, J., Miller, M.T., Scarborough, H., Zatorski, A.V., Cygan, A., Price, A.A., Yost, S.A., Bohannon, C.D., Jacob, J. et al. (2014) Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2. Nature 509, 381-384 CrossRef PubMed
-
(2014)
Nature
, vol.509
, pp. 381-384
-
-
Khan, A.G.1
Whidby, J.2
Miller, M.T.3
Scarborough, H.4
Zatorski, A.V.5
Cygan, A.6
Price, A.A.7
Yost, S.A.8
Bohannon, C.D.9
Jacob, J.10
-
95
-
-
68149164336
-
Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry
-
CrossRef PubMed
-
Sharma, S., Zheng, H., Huang, Y.J., Ertekin, A., Hamuro, Y., Rossi, P., Tejero, R., Acton, T.B., Xiao, R., Jiang, M. et al. (2009) Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry. Proteins 76, 882-894 CrossRef PubMed
-
(2009)
Proteins
, vol.76
, pp. 882-894
-
-
Sharma, S.1
Zheng, H.2
Huang, Y.J.3
Ertekin, A.4
Hamuro, Y.5
Rossi, P.6
Tejero, R.7
Acton, T.B.8
Xiao, R.9
Jiang, M.10
-
96
-
-
84871689599
-
Structure and dynamics of the ATP-bound open conformation of Hsp70 chaperones
-
CrossRef PubMed
-
Kityk, R., Kopp, J., Sinning, I. and Mayer, M.P. (2012) Structure and dynamics of the ATP-bound open conformation of Hsp70 chaperones. Mol. Cell 48, 863-874 CrossRef PubMed
-
(2012)
Mol. Cell
, vol.48
, pp. 863-874
-
-
Kityk, R.1
Kopp, J.2
Sinning, I.3
Mayer, M.P.4
-
97
-
-
1642514905
-
Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS
-
CrossRef PubMed
-
Pantazatos, D., Kim, J.S., Klock, H.E., Stevens, R.C., Wilson, I.A., Lesley, S.A. and Woods, Jr, V.L. (2004) Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS. Proc. Natl. Acad. Sci. U.S.A. 101, 751-756 CrossRef PubMed
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 751-756
-
-
Pantazatos, D.1
Kim, J.S.2
Klock, H.E.3
Stevens, R.C.4
Wilson, I.A.5
Lesley, S.A.6
Woods, V.L.7
|