-
1
-
-
0001957353
-
Proton transfer, acid-base catalysis, and enzymatic hydrolysis
-
Eigen M (1964) Proton transfer, acid-base catalysis, and enzymatic hydrolysis. Angew Chem Intl Ed Engl 3:1-19.
-
(1964)
Angew Chem Intl Ed Engl
, vol.3
, pp. 1-19
-
-
Eigen, M.1
-
2
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
Bai Y, Milne JS, Mayne L, Englander SW (1993) Primary structure effects on peptide group hydrogen exchange. Proteins 17:75-86. (Pubitemid 23261059)
-
(1993)
Proteins: Structure, Function and Genetics
, vol.17
, Issue.1
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
3
-
-
0027169975
-
Isotope effects in peptide group hydrogen exchange
-
Connelly GP, Bai Y, Jeng MF, Englander SW (1993) Isotope effects in peptide group hydrogen exchange. Proteins 17:87-92. (Pubitemid 23261060)
-
(1993)
Proteins: Structure, Function and Genetics
, vol.17
, Issue.1
, pp. 87-92
-
-
Connelly, G.P.1
Bai, Y.2
Jeng, M.-F.3
Englander, S.W.4
-
4
-
-
0000013948
-
Protein structure and enzyme activity
-
Boyer PD, Lardy H, Myrback K, Eds. New York: Academic Press
-
Linderstrøm-Lang KU, Schellman JA. Protein structure and enzyme activity. In: Boyer PD, Lardy H, Myrback K, Eds. (1959) The enzymes. New York: Academic Press, pp 443-510.
-
(1959)
The Enzymes
, pp. 443-510
-
-
Linderstrøm-Lang, K.U.1
Schellman, J.A.2
-
5
-
-
0013994339
-
Hydrogen exchange in proteins
-
Hvidt A, Nielsen SO (1966) Hydrogen exchange in proteins. Adv Protein Chem 21:287-386.
-
(1966)
Adv Protein Chem
, vol.21
, pp. 287-386
-
-
Hvidt, A.1
Nielsen, S.O.2
-
6
-
-
0020855355
-
Hydrogen exchange and structural dynamics of proteins and nucleic-acids
-
Englander SW, Kallenbach NR (1983) Hydrogen exchange and structural dynamics of proteins and nucleic-acids. Q Rev Biophys 16:521-655.
-
(1983)
Q Rev Biophys
, vol.16
, pp. 521-655
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
8
-
-
39049121161
-
The foldon substructure of staphylococcal nuclease
-
Bédard S, Mayne LC, Peterson RW, Wand AJ, Englander SW (2008) The foldon substructure of staphylococcal nuclease. J Mol Biol 376:1142-1154.
-
(2008)
J Mol Biol
, vol.376
, pp. 1142-1154
-
-
Bédard, S.1
Mayne, L.C.2
Peterson, R.W.3
Wand, A.J.4
Englander, S.W.5
-
10
-
-
0002278852
-
Packing defects, cavities, volume fluctuations, and access to the interior of proteins, including some general comments on surface area and protein structure
-
Richards FM (1979) Packing defects, cavities, volume fluctuations, and access to the interior of proteins, including some general comments on surface area and protein structure. Carlsberg Res Commun 44:47-63.
-
(1979)
Carlsberg Res Commun
, vol.44
, pp. 47-63
-
-
Richards, F.M.1
-
11
-
-
0020493395
-
Hydrogen-exchange and the dynamic structure of proteins
-
Woodward C, Simon I, Tuchsen E (1982) Hydrogen-exchange and the dynamic structure of proteins. Mol Cell Biochem 48:135-160.
-
(1982)
Mol Cell Biochem
, vol.48
, pp. 135-160
-
-
Woodward, C.1
Simon, I.2
Tuchsen, E.3
-
12
-
-
0021099323
-
The pH dependence of hydrogen exchange in proteins
-
Matthew J, Richards F (1983) The pH dependence of hydrogen exchange in proteins. J Biol Chem 258:3039-3044.
-
(1983)
J Biol Chem
, vol.258
, pp. 3039-3044
-
-
Matthew, J.1
Richards, F.2
-
13
-
-
0032557227
-
pK(a) shift effects on backbone amide base-catalyzed hydrogen exchange rates in peptides
-
DOI 10.1021/ja963133m
-
Fogolari F, Esposito G, Viglino P, Briggs JM, McCammon JA (1998) pKa shift effects on backbone amide base-catalyzed hydrogen exchange rates in peptides. J Am Chem Soc 120:3735-3738. (Pubitemid 28218449)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.15
, pp. 3735-3738
-
-
Fogolari, F.1
Esposito, G.2
Viglino, P.3
Briggs, J.M.4
McCammon, J.A.5
-
14
-
-
70349627270
-
Peptide conformer acidity analysis of protein flexibility monitored by hydrogen exchange
-
LeMaster DM, Anderson JS, Hernandez G (2009) Peptide conformer acidity analysis of protein flexibility monitored by hydrogen exchange. Biochemistry 48:9256-9265.
-
(2009)
Biochemistry
, vol.48
, pp. 9256-9265
-
-
LeMaster, D.M.1
Anderson, J.S.2
Hernandez, G.3
-
15
-
-
33845356234
-
Electrostatic potential energy within a protein monitored by metal charge-dependent hydrogen exchange
-
DOI 10.1529/biophysj.106.094219
-
Anderson JS, LeMaster DM, Hernandez G (2006) Electrostatic potential energy within a protein monitored by metal charge-dependent hydrogen exchange. Biophys J 91:L93-L95. (Pubitemid 44887255)
-
(2006)
Biophysical Journal
, vol.91
, Issue.11
-
-
Anderson, J.S.1
LeMaster, D.M.2
Hernandez, G.3
-
16
-
-
0030580089
-
Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors
-
DOI 10.1006/jmbi.1996.0550
-
Hilser VJ, Freire E (1996) Structure-based calculation of the equilibrium folding pathway of proteins: correlation with hydrogen-exchange protection factors. J Mol Biol 262:756-772. (Pubitemid 26343520)
-
(1996)
Journal of Molecular Biology
, vol.262
, Issue.5
, pp. 756-772
-
-
Hilser, V.J.1
Freire, E.2
-
17
-
-
0030970740
-
Curious structure in 'canonical' alanine-based peptides
-
DOI 10.1002/(SICI)1097-0134(199705)28:1<59::AID-PROT6>3.0.CO;2-E
-
Shirley WA, Brooks CL (1997) Curious structure in "canonical" alanine-based peptides. Proteins 28:59-71. (Pubitemid 27194019)
-
(1997)
Proteins: Structure, Function and Genetics
, vol.28
, Issue.1
, pp. 59-71
-
-
Shirley, W.A.1
Brooks III, C.L.2
-
18
-
-
0032080053
-
Calculations on folding of segment B1 of streptococcal protein G
-
DOI 10.1006/jmbi.1998.1688
-
Sheinerman FB, Brooks CL (1998) Calculations on folding of segment b1 of streptococcal protein G. J Mol Biol 278:439-456. (Pubitemid 28220916)
-
(1998)
Journal of Molecular Biology
, vol.278
, Issue.2
, pp. 439-456
-
-
Sheinerman, F.B.1
Brooks III, C.L.2
-
19
-
-
0032570266
-
Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model
-
DOI 10.1021/bi9720641
-
Bahar I, Wallqvist A, Covell DG, Jernigan RL (1998) Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model. Biochemistry 37:1067-1075. (Pubitemid 28100609)
-
(1998)
Biochemistry
, vol.37
, Issue.4
, pp. 1067-1075
-
-
Bahar, I.1
Wallqvist, A.2
Covell, D.G.3
Jernigan, R.L.4
-
20
-
-
0033181018
-
Conformational dynamics of cytochrome c: Correlation to hydrogen exchange
-
DOI 10.1002/(SICI)1097-0134(19990801)36:2<175::AID-PROT4>3.0.CO;2-R
-
Garcia AE, Hummer G (1999) Conformational dynamics of cytochrome c: correlation to hydrogen exchange. Proteins 36:175-191. (Pubitemid 29305087)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.36
, Issue.2
, pp. 175-191
-
-
Garcia, A.E.1
Hummer, G.2
-
21
-
-
0034636991
-
Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins
-
Wooll JO, Wrabl JO, Hilser VJ (2000) Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins. J Mol Biol 301:247-256.
-
(2000)
J Mol Biol
, vol.301
, pp. 247-256
-
-
Wooll, J.O.1
Wrabl, J.O.2
Hilser, V.J.3
-
22
-
-
0035928606
-
Hydrogen exchange in peptides and proteins using NMR spectroscopy
-
Dempsey CE (2001) Hydrogen exchange in peptides and proteins using NMR spectroscopy. Prog NMR Spectrosc 39:135-170.
-
(2001)
Prog NMR Spectrosc
, vol.39
, pp. 135-170
-
-
Dempsey, C.E.1
-
23
-
-
9944258521
-
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
-
DOI 10.1016/j.str.2004.09.011, PII S0969212604003454
-
Dixon RDS, Chen YW, Feng D, Khare SD, Prutzman KC, Schaller MD, Campbell SL, Dokholyan NV (2004) New insights into fak signaling and localization based on detection of a fat domain folding intermediate. Structure 12:2161-2171. (Pubitemid 39593195)
-
(2004)
Structure
, vol.12
, Issue.12
, pp. 2161-2171
-
-
Dixon, R.D.S.1
Chen, Y.2
Ding, F.3
Khare, S.D.4
Prutzman, K.C.5
Schaller, M.D.6
Campbell, S.L.7
Dokholyan, N.V.8
-
24
-
-
25144442821
-
COREX/BEST server: A web browser-based program that calculates regional stability variations within protein structures
-
DOI 10.1093/bioinformatics/bti520
-
Vertrees J, Barritt P, Whitten S, Hilser VJ (2005) Corex/best server: a web browser-based program that calculates regional stability variations within protein structures. Bioinformatics 21:3318-3319. (Pubitemid 41418450)
-
(2005)
Bioinformatics
, vol.21
, Issue.15
, pp. 3318-3319
-
-
Vertrees, J.1
Barritt, P.2
Whitten, S.3
Hilser, V.J.4
-
26
-
-
30444450687
-
Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7
-
DOI 10.1073/pnas.0508667102
-
Gsponer J, Hopearuoho H, Whittaker SBM, Spence GR, Moore GR, Paci E, Radford SE, Vendruscolo M (2006) Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7. Proc Natl Acad Sci USA 103:99-104. (Pubitemid 43076111)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.1
, pp. 99-104
-
-
Gsponer, J.1
Hopearuoho, H.2
Whittaker, S.B.-M.3
Spence, G.R.4
Moore, G.R.5
Paci, E.6
Radford, S.E.7
Vendruscolo, M.8
-
27
-
-
33846805944
-
Prediction of Local Structural Stabilities of Proteins from Their Amino Acid Sequences
-
DOI 10.1016/j.str.2006.12.007, PII S0969212607000366
-
Tartaglia GG, Cavalli A, Vendruscolo M (2007) Prediction of local structural stabilities of proteins from their amino acid sequences. Structure 15:139-143. (Pubitemid 46209820)
-
(2007)
Structure
, vol.15
, Issue.2
, pp. 139-143
-
-
Tartaglia, G.G.1
Cavalli, A.2
Vendruscolo, M.3
-
28
-
-
0346365084
-
Rare Fluctuations of Native Proteins Sampled by Equilibrium Hydrogen Exchange
-
DOI 10.1021/ja036523z
-
Vendrusculo M, Paci E, Dobson CM, Karplus M (2003) Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange. J Am Chem Soc 125:15686-15687. (Pubitemid 37553654)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.51
, pp. 15686-15687
-
-
Vendruscolo, M.1
Paci, E.2
Dobson, C.M.3
Karplus, M.4
-
29
-
-
33644793339
-
Structural interpretation of hydrogen exchange protection factors in proteins: characterization of the native state fluctuations of CI2
-
DOI 10.1016/j.str.2005.09.012, PII S0969212605003916
-
Best RB, Vendruscolo M (2006) Structural interpretation of hydrogen exchange protection factors in proteins: characterization of the native state fluctuations of CI2. Structure 14:97-106. (Pubitemid 43350077)
-
(2006)
Structure
, vol.14
, Issue.1
, pp. 97-106
-
-
Best, R.B.1
Vendruscolo, M.2
-
30
-
-
33748799981
-
Dynamic visions of enzymatic reactions
-
DOI 10.1126/science.1132851
-
Vendruscolo M, Dobson CM (2006) Dynamic visions of enzymatic reactions. Science 313:1586-1587. (Pubitemid 44414023)
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1586-1587
-
-
Vendruscolo, M.1
Dobson, C.M.2
-
31
-
-
69249140572
-
Prediction of amino acid residues protected from hydrogen-deuterium exchange in a protein chain
-
Moscow
-
Dovidchenko NV, Lobanov MY, Garbuzynskiy SO, Galzitskaya OV (2009) Prediction of amino acid residues protected from hydrogen-deuterium exchange in a protein chain. Biochemistry-Moscow 74:888-897.
-
(2009)
Biochemistry
, vol.74
, pp. 888-897
-
-
Dovidchenko, N.V.1
Lobanov, M.Y.2
Garbuzynskiy, S.O.3
Galzitskaya, O.V.4
-
32
-
-
76249122268
-
An ensemble view of allostery
-
Hilser VJ (2010) An ensemble view of allostery. Science 327:653-654.
-
(2010)
Science
, vol.327
, pp. 653-654
-
-
Hilser, V.J.1
-
33
-
-
80052340812
-
The role of protein conformational fluctuations in allostery, function, and evolution
-
Wrabl JO, Gu JN, Liu T, Schrank TP, Whitten ST, Hilser VJ (2011) The role of protein conformational fluctuations in allostery, function, and evolution. Biophys Chem 159:129-141.
-
(2011)
Biophys Chem
, vol.159
, pp. 129-141
-
-
Wrabl, J.O.1
Gu, J.N.2
Liu, T.3
Schrank, T.P.4
Whitten, S.T.5
Hilser, V.J.6
-
34
-
-
80054978046
-
Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes
-
Craig PO, Lätzer J, Weinkam P, Hoffman RMB, Ferreiro DU, Komives EA, Wolynes PG (2011) Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes. J Am Chem Soc 133 17463-17472.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 17463-17472
-
-
Craig, P.O.1
Lätzer, J.2
Weinkam, P.3
Hoffman, R.M.B.4
Ferreiro, D.U.5
Komives, E.A.6
Wolynes, P.G.7
-
35
-
-
0031989849
-
Accurate quantitation of water-amide proton exchange rates using the phase-modulated clean chemical exchange (cleanex-pm) approach with a fast-HSQC (fHSQC) detection scheme
-
Hwang TL, van Zijl PC, Mori S (1998) Accurate quantitation of water-amide proton exchange rates using the phase-modulated clean chemical exchange (cleanex-pm) approach with a fast-HSQC (fHSQC) detection scheme. J Biomol NMR 11:221-226.
-
(1998)
J Biomol NMR
, vol.11
, pp. 221-226
-
-
Hwang, T.L.1
Van Zijl, P.C.2
Mori, S.3
-
36
-
-
0015514380
-
Primary structure effects on peptide group hydrogen exchange
-
Molday RS, Englander SW, Kallen RG (1972) Primary structure effects on peptide group hydrogen exchange. Biochemistry 11:150-158.
-
(1972)
Biochemistry
, vol.11
, pp. 150-158
-
-
Molday, R.S.1
Englander, S.W.2
Kallen, R.G.3
-
37
-
-
33750329946
-
2H Exchange MALDI-TOF Mass Spectrometry
-
DOI 10.1016/j.jasms.2006.07.023, PII S1044030506006726
-
Truhlar SME, Croy CH, Torpey JW, Koeppe JR, Komives EA (2006) Solvent accessibility of protein surfaces by amide H/H2 exchange MALDI-TOF mass spectrometry. J Am Soc Mass Spectrom 17:1490-1497. (Pubitemid 44635284)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.11
, pp. 1490-1497
-
-
Truhlar, S.M.E.1
Croy, C.H.2
Torpey, J.W.3
Koeppe, J.R.4
Komives, E.A.5
-
38
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai Y, Sosnick TR, Mayne L, Englander SW (1995) Protein folding intermediates: native-state hydrogen exchange. Science 269:192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
39
-
-
0029120465
-
Thermodynamic parameters from hydrogen exchange measurements
-
Bai Y, Englander JJ, Mayne L, Milne JS, Englander SW (1995) Thermodynamic parameters from hydrogen exchange measurements. Energ Biol Macromol 259:344-356.
-
(1995)
Energ Biol Macromol
, vol.259
, pp. 344-356
-
-
Bai, Y.1
Englander, J.J.2
Mayne, L.3
Milne, J.S.4
Englander, S.W.5
-
40
-
-
67650034385
-
Polarization and polarizability assessed by protein amide acidity
-
Hernandez G, Anderson JS, LeMaster DM (2009) Polarization and polarizability assessed by protein amide acidity. Biochemistry 48:6482-6494.
-
(2009)
Biochemistry
, vol.48
, pp. 6482-6494
-
-
Hernandez, G.1
Anderson, J.S.2
LeMaster, D.M.3
-
41
-
-
44949164734
-
A billion-fold range in acidity for the solvent-exposed amides of Pyrococcus furiosus rubredoxin
-
DOI 10.1021/bi800284y
-
Anderson JS, Hernandez G, Lemaster DM (2008) A billion-fold range in acidity for the solvent-exposed amides of Pyrococcus furiosus rubredoxin. Biochemistry 47:6178-6188. (Pubitemid 351812830)
-
(2008)
Biochemistry
, vol.47
, Issue.23
, pp. 6178-6188
-
-
Anderson, J.S.1
Hernandez, G.2
LeMaster, D.M.3
-
42
-
-
0031042186
-
Predicting the equilibrium protein folding pathway: Structure-based analysis of staphylococcal nuclease
-
DOI 10.1002/(SICI)1097-0134(199702)27:2<171::AID-PROT3>3.0.CO;2-J
-
Hilser VJ, Freire E (1997) Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease. Proteins 27:171-183. (Pubitemid 27113712)
-
(1997)
Proteins: Structure, Function and Genetics
, vol.27
, Issue.2
, pp. 171-183
-
-
Hilser, V.J.1
Freire, E.2
-
43
-
-
84862564042
-
Protein dynamics viewed by hydrogen exchange
-
Skinner JJ, Lim WK, Bédard S, Black BE, Englander SW (2012) Protein dynamics viewed by hydrogen exchange. Protein Sci 21:996-1005.
-
(2012)
Protein Sci
, vol.21
, pp. 996-1005
-
-
Skinner, J.J.1
Lim, W.K.2
Bédard, S.3
Black, B.E.4
Englander, S.W.5
-
44
-
-
77951245193
-
Aqueous basic solutions: Hydroxide solvation, structural diffusion, and comparison to the hydrated proton
-
Marx D, Chandra A, Tuckerman ME (2010) Aqueous basic solutions: hydroxide solvation, structural diffusion, and comparison to the hydrated proton. Chem Rev 110:2174-2216.
-
(2010)
Chem Rev
, vol.110
, pp. 2174-2216
-
-
Marx, D.1
Chandra, A.2
Tuckerman, M.E.3
-
45
-
-
62549159643
-
Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added
-
Avbelj F, Baldwin RL (2009) Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added. Proc Natl Acad Sci USA 106:3137-3141.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3137-3141
-
-
Avbelj, F.1
Baldwin, R.L.2
-
47
-
-
0035223641
-
Modeling the native state ensemble
-
Murphy KP, Ed. Totowa, NJ: Humana Press
-
Hilser VJ. Modeling the native state ensemble. In: Murphy KP, Ed. (2001) Proteins. Totowa, NJ: Humana Press, pp. 93-116.
-
(2001)
Proteins
, pp. 93-116
-
-
Hilser, V.J.1
-
48
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
49
-
-
84988087911
-
Calculating the electrostatic potential of molecules in solution - Method and error assessment
-
Gilson MK, Sharp KA, Honig BH (1988) Calculating the electrostatic potential of molecules in solution - method and error assessment. J Comput Chem 9:327-335.
-
(1988)
J Comput Chem
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
-
50
-
-
0029038105
-
Salt effects on polyelectrolyte-ligand binding: Comparison of Poisson-Boltzmann, and limiting law/counterion binding models
-
Sharp KA, Friedman RA, Misra V, Hecht J, Honig B (1995) Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models. Biopolymers 36:245-262.
-
(1995)
Biopolymers
, vol.36
, pp. 245-262
-
-
Sharp, K.A.1
Friedman, R.A.2
Misra, V.3
Hecht, J.4
Honig, B.5
|