메뉴 건너뛰기




Volumn 36, Issue , 2015, Pages 85-90

Regulatory RNA-assisted genome engineering in microorganisms

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION; METABOLIC ENGINEERING; RNA;

EID: 84940109504     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2015.08.003     Document Type: Review
Times cited : (20)

References (50)
  • 1
    • 78649716727 scopus 로고    scopus 로고
    • Manufacturing molecules through metabolic engineering
    • Keasling J.D. Manufacturing molecules through metabolic engineering. Science 2010, 330:1355-1358.
    • (2010) Science , vol.330 , pp. 1355-1358
    • Keasling, J.D.1
  • 2
    • 84880084177 scopus 로고    scopus 로고
    • Synthetic biology and metabolic engineering approaches to produce biofuels
    • Rabinovitch-Deere C.A., Oliver J.W.K., Rodriguez G.M., Atsumi S. Synthetic biology and metabolic engineering approaches to produce biofuels. Chem Rev 2013, 113:4611-4632.
    • (2013) Chem Rev , vol.113 , pp. 4611-4632
    • Rabinovitch-Deere, C.A.1    Oliver, J.W.K.2    Rodriguez, G.M.3    Atsumi, S.4
  • 3
    • 84861440312 scopus 로고    scopus 로고
    • Systems metabolic engineering of microorganisms for natural and non-natural chemicals
    • Lee J.W., Na D., Park J.M., Lee J., Choi S., Lee S.Y. Systems metabolic engineering of microorganisms for natural and non-natural chemicals. Nat Chem Biol 2012, 8:536-546.
    • (2012) Nat Chem Biol , vol.8 , pp. 536-546
    • Lee, J.W.1    Na, D.2    Park, J.M.3    Lee, J.4    Choi, S.5    Lee, S.Y.6
  • 5
    • 84873800970 scopus 로고    scopus 로고
    • Genome-scale engineering for systems and synthetic biology
    • Esvelt K.M., Wang H.H. Genome-scale engineering for systems and synthetic biology. Mol Syst Biol 2013, 9:641.
    • (2013) Mol Syst Biol , vol.9 , pp. 641
    • Esvelt, K.M.1    Wang, H.H.2
  • 6
    • 84947598027 scopus 로고    scopus 로고
    • Rapid prototyping of microbial cell factories via genome-scale engineering
    • Si T., Xiao H., Zhao H. Rapid prototyping of microbial cell factories via genome-scale engineering. Biotechnol Adv 2014, 10.1016/j.biotechadv.2014.11.007.
    • (2014) Biotechnol Adv
    • Si, T.1    Xiao, H.2    Zhao, H.3
  • 7
    • 84884325112 scopus 로고    scopus 로고
    • Genome engineering at the dawn of the golden age
    • Segal D.J., Meckler J.F. Genome engineering at the dawn of the golden age. Annu Rev Genomics Hum Genet 2013, 14:135-158.
    • (2013) Annu Rev Genomics Hum Genet , vol.14 , pp. 135-158
    • Segal, D.J.1    Meckler, J.F.2
  • 8
    • 84882622697 scopus 로고    scopus 로고
    • Genome-scale genetic engineering in Escherichia coli
    • Jeong J., Cho N., Jung D., Bang D. Genome-scale genetic engineering in Escherichia coli. Biotechnol Adv 2013, 31:804-810.
    • (2013) Biotechnol Adv , vol.31 , pp. 804-810
    • Jeong, J.1    Cho, N.2    Jung, D.3    Bang, D.4
  • 10
    • 84898878580 scopus 로고    scopus 로고
    • A versatile framework for microbial engineering using synthetic non-coding RNAs
    • Qi L.S., Arkin A.P. A versatile framework for microbial engineering using synthetic non-coding RNAs. Nat Rev Microbiol 2014, 12:341-354.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 341-354
    • Qi, L.S.1    Arkin, A.P.2
  • 12
    • 84865278051 scopus 로고    scopus 로고
    • Customized optimization of metabolic pathways by combinatorial transcriptional engineering
    • Du J., Yuan Y., Si T., Lian J., Zhao H. Customized optimization of metabolic pathways by combinatorial transcriptional engineering. Nucleic Acids Res 2012, 40:e142.
    • (2012) Nucleic Acids Res , vol.40 , pp. e142
    • Du, J.1    Yuan, Y.2    Si, T.3    Lian, J.4    Zhao, H.5
  • 13
  • 14
    • 84873596341 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
    • Na D., Yoo S.M., Chung H., Park H., Park J.H., Lee S.Y. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat Biotechnol 2013, 31:170-174.
    • (2013) Nat Biotechnol , vol.31 , pp. 170-174
    • Na, D.1    Yoo, S.M.2    Chung, H.3    Park, H.4    Park, J.H.5    Lee, S.Y.6
  • 16
    • 84925607864 scopus 로고    scopus 로고
    • RNAi-assisted genome evolution in Saccharomyces cerevisiae for complex phenotype engineering
    • Si T., Luo Y., Bao Z., Zhao H. RNAi-assisted genome evolution in Saccharomyces cerevisiae for complex phenotype engineering. ACS Synth Biol 2015, 4:283-291.
    • (2015) ACS Synth Biol , vol.4 , pp. 283-291
    • Si, T.1    Luo, Y.2    Bao, Z.3    Zhao, H.4
  • 17
    • 84902164599 scopus 로고    scopus 로고
    • Genome-wide RNAi screen reveals the E3 SUMO-protein ligase gene SIZ1 as a novel determinant of furfural tolerance in Saccharomyces cerevisiae
    • Xiao H., Zhao H. Genome-wide RNAi screen reveals the E3 SUMO-protein ligase gene SIZ1 as a novel determinant of furfural tolerance in Saccharomyces cerevisiae. Biotechnol Biofuels 2014, 7:78.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 78
    • Xiao, H.1    Zhao, H.2
  • 18
    • 84862785751 scopus 로고    scopus 로고
    • A genome-wide inducible phenotypic screen identifies antisense RNA constructs silencing Escherichia coli essential genes
    • Meng J., Kanzaki G., Meas D., Lam C.K., Crummer H., Tain J., Xu H.H. A genome-wide inducible phenotypic screen identifies antisense RNA constructs silencing Escherichia coli essential genes. FEMS Microbiol Lett 2012, 329:45-53.
    • (2012) FEMS Microbiol Lett , vol.329 , pp. 45-53
    • Meng, J.1    Kanzaki, G.2    Meas, D.3    Lam, C.K.4    Crummer, H.5    Tain, J.6    Xu, H.H.7
  • 21
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing. The new frontier of genome engineering with CRISPR-Cas9
    • Doudna J.A., Charpentier E. Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 2014, 346:1258096.
    • (2014) Science , vol.346 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2
  • 23
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang W., Bikard D., Cox D., Zhang F., Marraffini L.A. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 2013, 31:233-239.
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 26
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang H., Yang H., Shivalila C.S., Dawlaty M.M., Cheng A.W., Zhang F., Jaenisch R. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 2013, 153:910-918.
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6    Jaenisch, R.7
  • 29
    • 84929572600 scopus 로고    scopus 로고
    • Homology integrated CRISPR-Cas (HI-CRISPR) system for one-step multi-gene disruptions in Saccharomyces cerevisiae
    • Bao Z., Xiao H., Liang J., Zhang L., Xiong X., Sun N., Si T., Zhao H. Homology integrated CRISPR-Cas (HI-CRISPR) system for one-step multi-gene disruptions in Saccharomyces cerevisiae. ACS Synth Biol 2014, 10.1021/sb500255k.
    • (2014) ACS Synth Biol
    • Bao, Z.1    Xiao, H.2    Liang, J.3    Zhang, L.4    Xiong, X.5    Sun, N.6    Si, T.7    Zhao, H.8
  • 31
    • 84927920113 scopus 로고    scopus 로고
    • CRISPR-Cas system enables fast and simple genome editing of industrial Saccharomyces cerevisiae strains
    • Stovicek V., Borodina I., Forster J. CRISPR-Cas system enables fast and simple genome editing of industrial Saccharomyces cerevisiae strains. Metab Eng Commun 2015, 2:13-22.
    • (2015) Metab Eng Commun , vol.2 , pp. 13-22
    • Stovicek, V.1    Borodina, I.2    Forster, J.3
  • 33
    • 84925355124 scopus 로고    scopus 로고
    • Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system
    • Jiang Y., Chen B., Duan C., Sun B., Yang J., Yang S. Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl Environ Microbiol 2015, 81:2506-2514.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 2506-2514
    • Jiang, Y.1    Chen, B.2    Duan, C.3    Sun, B.4    Yang, J.5    Yang, S.6
  • 34
    • 84934947770 scopus 로고    scopus 로고
    • High-efficiency multiplex genome editing of Streptomyces species using an engineered CRISPR/Cas system
    • Cobb R.E., Wang Y., Zhao H. High-efficiency multiplex genome editing of Streptomyces species using an engineered CRISPR/Cas system. ACS Synth Biol 2014, 10.1021/sb500351f.
    • (2014) ACS Synth Biol
    • Cobb, R.E.1    Wang, Y.2    Zhao, H.3
  • 35
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi L.S., Larson M.H., Gilbert L.A., Doudna J.A., Weissman J.S., Arkin A.P., Lim W.A. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 2013, 152:1173-1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 38
    • 84882986957 scopus 로고    scopus 로고
    • Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    • Bikard D., Jiang W., Samai P., Hochschild A., Zhang F., Marraffini L.A. Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res 2013, 41:7429-7437.
    • (2013) Nucleic Acids Res , vol.41 , pp. 7429-7437
    • Bikard, D.1    Jiang, W.2    Samai, P.3    Hochschild, A.4    Zhang, F.5    Marraffini, L.A.6
  • 39
    • 84886488970 scopus 로고    scopus 로고
    • Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas
    • Farzadfard F., Perli S.D., Lu T.K. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol 2013, 2:604-613.
    • (2013) ACS Synth Biol , vol.2 , pp. 604-613
    • Farzadfard, F.1    Perli, S.D.2    Lu, T.K.3
  • 40
    • 84929701098 scopus 로고    scopus 로고
    • Synthetic RNAs for gene regulation: design principles and computational tools
    • Lagana A., Shasha D., Croce C.M. Synthetic RNAs for gene regulation: design principles and computational tools. Front Bioeng Biotechnol 2014, 2:65.
    • (2014) Front Bioeng Biotechnol , vol.2 , pp. 65
    • Lagana, A.1    Shasha, D.2    Croce, C.M.3
  • 41
    • 84893287073 scopus 로고    scopus 로고
    • E-CRISP: fast CRISPR target site identification
    • Heigwer F., Kerr G., Boutros M. E-CRISP: fast CRISPR target site identification. Nat Methods 2014, 11:122-123.
    • (2014) Nat Methods , vol.11 , pp. 122-123
    • Heigwer, F.1    Kerr, G.2    Boutros, M.3
  • 42
    • 84929142256 scopus 로고    scopus 로고
    • CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
    • Naito Y., Hino K., Bono H., Ui-Tei K. CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. Bioinformatics 2015, 31:1120-1123.
    • (2015) Bioinformatics , vol.31 , pp. 1120-1123
    • Naito, Y.1    Hino, K.2    Bono, H.3    Ui-Tei, K.4
  • 43
    • 84896308706 scopus 로고    scopus 로고
    • Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
    • Bae S., Park J., Kim J.S. Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics 2014, 30:1473-1475.
    • (2014) Bioinformatics , vol.30 , pp. 1473-1475
    • Bae, S.1    Park, J.2    Kim, J.S.3
  • 44
    • 84925639589 scopus 로고    scopus 로고
    • Quorum-sensing linked RNA interference for dynamic metabolic pathway control in Saccharomyces cerevisiae
    • Williams T.C., Averesch N.J., Winter G., Plan M.R., Vickers C.E., Nielsen L.K., Kromer J.O. Quorum-sensing linked RNA interference for dynamic metabolic pathway control in Saccharomyces cerevisiae. Metab Eng 2015, 29:124-134.
    • (2015) Metab Eng , vol.29 , pp. 124-134
    • Williams, T.C.1    Averesch, N.J.2    Winter, G.3    Plan, M.R.4    Vickers, C.E.5    Nielsen, L.K.6    Kromer, J.O.7
  • 45
    • 84863226500 scopus 로고    scopus 로고
    • Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
    • Qi L., Lucks J.B., Liu C.C., Mutalik V.K., Arkin A.P. Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res 2012, 40:5775-5786.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5775-5786
    • Qi, L.1    Lucks, J.B.2    Liu, C.C.3    Mutalik, V.K.4    Arkin, A.P.5
  • 46
    • 84925534357 scopus 로고    scopus 로고
    • A light-inducible CRISPR-Cas9 system for control of endogenous gene activation
    • Polstein L.R., Gersbach C.A. A light-inducible CRISPR-Cas9 system for control of endogenous gene activation. Nat Chem Biol 2015, 11:198-200.
    • (2015) Nat Chem Biol , vol.11 , pp. 198-200
    • Polstein, L.R.1    Gersbach, C.A.2
  • 49
    • 84925462732 scopus 로고    scopus 로고
    • Creating small transcription activating RNAs
    • Chappell J., Takahashi M.K., Lucks J.B. Creating small transcription activating RNAs. Nat Chem Biol 2015, 11:214-220.
    • (2015) Nat Chem Biol , vol.11 , pp. 214-220
    • Chappell, J.1    Takahashi, M.K.2    Lucks, J.B.3
  • 50
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang T., Wei J.J., Sabatini D.M., Lander E.S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 2014, 343:80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.