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Volumn 31, Issue 6, 2013, Pages 804-810

Genome-scale genetic engineering in Escherichia coli

Author keywords

Red recombination; Genome engineering; Multiplex automated genome engineering

Indexed keywords

BIOLOGICAL STUDIES; EXPERIMENTAL PROCEDURE; GENOME ENGINEERING; HIGH-THROUGHPUT SCREENING; INDUSTRIAL USE; PRECISE MANIPULATION; TECHNICAL IMPROVEMENT; TECHNICAL LIMITATIONS;

EID: 84882622697     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2013.04.003     Document Type: Review
Times cited : (35)

References (75)
  • 1
    • 77957329119 scopus 로고    scopus 로고
    • Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli
    • Ajikumar P.K., Xiao W.H., Tyo K.E., Wang Y., Simeon F., Leonard E., et al. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74.
    • (2010) Science , vol.330 , pp. 70-74
    • Ajikumar, P.K.1    Xiao, W.H.2    Tyo, K.E.3    Wang, Y.4    Simeon, F.5    Leonard, E.6
  • 2
    • 0033555688 scopus 로고    scopus 로고
    • Conserved sequence preference in DNA binding among recombination proteins: an effect of ssDNA secondary structure
    • Biet E., Sun J., Dutreix M. Conserved sequence preference in DNA binding among recombination proteins: an effect of ssDNA secondary structure. Nucleic Acids Res 1999, 27:596-600.
    • (1999) Nucleic Acids Res , vol.27 , pp. 596-600
    • Biet, E.1    Sun, J.2    Dutreix, M.3
  • 4
    • 84866050528 scopus 로고    scopus 로고
    • Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection
    • Carr P.A., Wang H.H., Sterling B., Isaacs F.J., Lajoie M.J., Xu G., et al. Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection. Nucleic Acids Res 2012, 40:e132.
    • (2012) Nucleic Acids Res , vol.40
    • Carr, P.A.1    Wang, H.H.2    Sterling, B.3    Isaacs, F.J.4    Lajoie, M.J.5    Xu, G.6
  • 5
    • 0015092565 scopus 로고
    • Role of exonuclease and beta protein of phage lambda in genetic recombination. V. Recombination of lambda DNA in vitro
    • Cassuto E., Lash T., Sriprakash K.S., Radding C.M. Role of exonuclease and beta protein of phage lambda in genetic recombination. V. Recombination of lambda DNA in vitro. Proc Natl Acad Sci U S A 1971, 68:1639-1643.
    • (1971) Proc Natl Acad Sci U S A , vol.68 , pp. 1639-1643
    • Cassuto, E.1    Lash, T.2    Sriprakash, K.S.3    Radding, C.M.4
  • 6
    • 0035824602 scopus 로고    scopus 로고
    • Structure and function of the Escherichia coli RecE protein, a member of the RecB nuclease domain family
    • Chang H.W., Julin D.A. Structure and function of the Escherichia coli RecE protein, a member of the RecB nuclease domain family. J Biol Chem 2001, 276:46004-46010.
    • (2001) J Biol Chem , vol.276 , pp. 46004-46010
    • Chang, H.W.1    Julin, D.A.2
  • 7
    • 44349162159 scopus 로고    scopus 로고
    • Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures
    • Chen Z., Yang H., Pavletich N.P. Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature 2008, 453:489-493.
    • (2008) Nature , vol.453 , pp. 489-493
    • Chen, Z.1    Yang, H.2    Pavletich, N.P.3
  • 8
    • 0038772084 scopus 로고    scopus 로고
    • A novel flavin-containing monooxygenase from Methylophaga sp strain SK1 and its indigo synthesis in Escherichia coli
    • Choi H.S., Kim J.K., Cho E.H., Kim Y.C., Kim J.I., Kim S.W. A novel flavin-containing monooxygenase from Methylophaga sp strain SK1 and its indigo synthesis in Escherichia coli. Biochem Biophys Res Commun 2003, 306:930-936.
    • (2003) Biochem Biophys Res Commun , vol.306 , pp. 930-936
    • Choi, H.S.1    Kim, J.K.2    Cho, E.H.3    Kim, Y.C.4    Kim, J.I.5    Kim, S.W.6
  • 9
    • 0035487293 scopus 로고    scopus 로고
    • Recombineering: a powerful new tool for mouse functional genomics
    • Copeland N.G., Jenkins N.A., Court D.L. Recombineering: a powerful new tool for mouse functional genomics. Nat Rev Genet 2001, 2:769-779.
    • (2001) Nat Rev Genet , vol.2 , pp. 769-779
    • Copeland, N.G.1    Jenkins, N.A.2    Court, D.L.3
  • 10
    • 0346103663 scopus 로고    scopus 로고
    • Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants
    • Costantino N., Court D.L. Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants. Proc Natl Acad Sci U S A 2003, 100:15748-15753.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 15748-15753
    • Costantino, N.1    Court, D.L.2
  • 11
    • 0032740855 scopus 로고    scopus 로고
    • RecQ and RecJ process blocked replication forks prior to the resumption of replication in UV-irradiated Escherichia coli
    • Courcelle J., Hanawalt P.C. RecQ and RecJ process blocked replication forks prior to the resumption of replication in UV-irradiated Escherichia coli. Mol Gen Genet MGG 1999, 262:543-551.
    • (1999) Mol Gen Genet MGG , vol.262 , pp. 543-551
    • Courcelle, J.1    Hanawalt, P.C.2
  • 12
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko K.A., Wanner B.L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 2000, 97:6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 13
    • 33747333128 scopus 로고    scopus 로고
    • A set of recombineering plasmids for gram-negative bacteria
    • Datta S., Costantino N., Court D.L. A set of recombineering plasmids for gram-negative bacteria. Gene 2006, 379:109-115.
    • (2006) Gene , vol.379 , pp. 109-115
    • Datta, S.1    Costantino, N.2    Court, D.L.3
  • 14
    • 40349101854 scopus 로고    scopus 로고
    • Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages
    • Datta S., Costantino N., Zhou X., Court D.L. Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages. Proc Natl Acad Sci U S A 2008, 105:1626-1631.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 1626-1631
    • Datta, S.1    Costantino, N.2    Zhou, X.3    Court, D.L.4
  • 15
    • 84875515904 scopus 로고    scopus 로고
    • Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis
    • Dietrich J.A., Shis D.L., Alikhani A., Keasling J.D. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Syst Synth Biol 2013, 2:47-58.
    • (2013) ACS Syst Synth Biol , vol.2 , pp. 47-58
    • Dietrich, J.A.1    Shis, D.L.2    Alikhani, A.3    Keasling, J.D.4
  • 16
    • 0022330775 scopus 로고
    • Reproducibility of microbial mutagenicity assays: II. Testing of carcinogens and noncarcinogens in Salmonella typhimurium and Escherichia coli
    • Dunkel V.C., Zeiger E., Brusick D., McCoy E., McGregor D., Mortelmans K., et al. Reproducibility of microbial mutagenicity assays: II. Testing of carcinogens and noncarcinogens in Salmonella typhimurium and Escherichia coli. Environ Mutagen 1985, 7(Suppl. 5):1-248.
    • (1985) Environ Mutagen , vol.7 , Issue.SUPPL. 5 , pp. 1-248
    • Dunkel, V.C.1    Zeiger, E.2    Brusick, D.3    McCoy, E.4    McGregor, D.5    Mortelmans, K.6
  • 17
    • 0024508604 scopus 로고
    • Phosphorothioates in molecular biology
    • Eckstein F., Gish G. Phosphorothioates in molecular biology. Trends Biochem Sci 1989, 14:97-100.
    • (1989) Trends Biochem Sci , vol.14 , pp. 97-100
    • Eckstein, F.1    Gish, G.2
  • 21
    • 0028343501 scopus 로고
    • Homologous pairing and strand exchange promoted by the Escherichia coli RecT protein
    • Hall S.D., Kolodner R.D. Homologous pairing and strand exchange promoted by the Escherichia coli RecT protein. Proc Natl Acad Sci U S A 1994, 91:3205-3209.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 3205-3209
    • Hall, S.D.1    Kolodner, R.D.2
  • 22
    • 0027391504 scopus 로고
    • Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA
    • Hall S.D., Kane M.F., Kolodner R.D. Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA. J Bacteriol 1993, 175:277-287.
    • (1993) J Bacteriol , vol.175 , pp. 277-287
    • Hall, S.D.1    Kane, M.F.2    Kolodner, R.D.3
  • 23
    • 69949148040 scopus 로고    scopus 로고
    • Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex
    • Handa N., Ichige A., Kobayashi I. Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex. Microbiology 2009, 155:2320-2332.
    • (2009) Microbiology , vol.155 , pp. 2320-2332
    • Handa, N.1    Ichige, A.2    Kobayashi, I.3
  • 24
    • 30344459720 scopus 로고    scopus 로고
    • Roles of E. coli double-strand-break-repair proteins in stress-induced mutation
    • He A.S., Rohatgi P.R., Hersh M.N., Rosenberg S.M. Roles of E. coli double-strand-break-repair proteins in stress-induced mutation. DNA Repair 2006, 5:258-273.
    • (2006) DNA Repair , vol.5 , pp. 258-273
    • He, A.S.1    Rohatgi, P.R.2    Hersh, M.N.3    Rosenberg, S.M.4
  • 25
    • 0015817690 scopus 로고
    • Genetic analysis of the recF pathway to genetic recombination in Escherichia coli K12: isolation and characterization of mutants
    • Horii Z., Clark A.J. Genetic analysis of the recF pathway to genetic recombination in Escherichia coli K12: isolation and characterization of mutants. J Mol Biol 1973, 80:327-344.
    • (1973) J Mol Biol , vol.80 , pp. 327-344
    • Horii, Z.1    Clark, A.J.2
  • 26
    • 79960502359 scopus 로고    scopus 로고
    • Precise manipulation of chromosomes in vivo enables genome-wide codon replacement
    • Isaacs F.J., Carr P.A., Wang H.H., Lajoie M.J., Sterling B., Kraal L., et al. Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science 2011, 333:348-353.
    • (2011) Science , vol.333 , pp. 348-353
    • Isaacs, F.J.1    Carr, P.A.2    Wang, H.H.3    Lajoie, M.J.4    Sterling, B.5    Kraal, L.6
  • 27
    • 14544272738 scopus 로고    scopus 로고
    • Effects of RecJ, RecQ, and RecFOR mutations on recombination in nuclease-deficient recB recD double mutants of Escherichia coli
    • Ivancic-Bace I., Salaj-Smic E., Brcic-Kostic K. Effects of RecJ, RecQ, and RecFOR mutations on recombination in nuclease-deficient recB recD double mutants of Escherichia coli. J Bacteriol 2005, 187:1350-1356.
    • (2005) J Bacteriol , vol.187 , pp. 1350-1356
    • Ivancic-Bace, I.1    Salaj-Smic, E.2    Brcic-Kostic, K.3
  • 29
    • 34547109364 scopus 로고    scopus 로고
    • Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli
    • Jin Y.S., Stephanopoulos G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 2007, 9:337-347.
    • (2007) Metab Eng , vol.9 , pp. 337-347
    • Jin, Y.S.1    Stephanopoulos, G.2
  • 30
    • 0032489495 scopus 로고    scopus 로고
    • The beta protein of phage lambda binds preferentially to an intermediate in DNA renaturation
    • Karakousis G., Ye N., Li Z., Chiu S.K., Reddy G., Radding C.M. The beta protein of phage lambda binds preferentially to an intermediate in DNA renaturation. J Mol Biol 1998, 276:721-731.
    • (1998) J Mol Biol , vol.276 , pp. 721-731
    • Karakousis, G.1    Ye, N.2    Li, Z.3    Chiu, S.K.4    Reddy, G.5    Radding, C.M.6
  • 31
    • 84867546617 scopus 로고    scopus 로고
    • 'Shotgun DNA synthesis' for the high-throughput construction of large DNA molecules
    • Kim H., Han H., Ahn J., Lee J., Cho N., Jang H., et al. 'Shotgun DNA synthesis' for the high-throughput construction of large DNA molecules. Nucleic Acids Res 2012, 40:e140.
    • (2012) Nucleic Acids Res , vol.40
    • Kim, H.1    Han, H.2    Ahn, J.3    Lee, J.4    Cho, N.5    Jang, H.6
  • 32
    • 78650021707 scopus 로고    scopus 로고
    • Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
    • Kosuri S., Eroshenko N., Leproust E.M., Super M., Way J., Li J.B., et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat Biotechnol 2010, 28:1295-1299.
    • (2010) Nat Biotechnol , vol.28 , pp. 1295-1299
    • Kosuri, S.1    Eroshenko, N.2    Leproust, E.M.3    Super, M.4    Way, J.5    Li, J.B.6
  • 33
    • 0034176335 scopus 로고    scopus 로고
    • Initiation of genetic recombination and recombination-dependent replication
    • Kowalczykowski S.C. Initiation of genetic recombination and recombination-dependent replication. Trends Biochem Sci 2000, 25:156-165.
    • (2000) Trends Biochem Sci , vol.25 , pp. 156-165
    • Kowalczykowski, S.C.1
  • 34
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • [table of contents]
    • Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev MMBR 1999, 63:751-813. [table of contents].
    • (1999) Microbiol Mol Biol Rev MMBR , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 36
    • 70349324305 scopus 로고    scopus 로고
    • Creating bacterial strains from genomes that have been cloned and engineered in yeast
    • Lartigue C., Vashee S., Algire M.A., Chuang R.Y., Benders G.A., Ma L., et al. Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science 2009, 325:1693-1696.
    • (2009) Science , vol.325 , pp. 1693-1696
    • Lartigue, C.1    Vashee, S.2    Algire, M.A.3    Chuang, R.Y.4    Benders, G.A.5    Ma, L.6
  • 37
    • 0032489359 scopus 로고    scopus 로고
    • The beta protein of phage lambda promotes strand exchange
    • Li Z., Karakousis G., Chiu S.K., Reddy G., Radding C.M. The beta protein of phage lambda promotes strand exchange. J Mol Biol 1998, 276:733-744.
    • (1998) J Mol Biol , vol.276 , pp. 733-744
    • Li, Z.1    Karakousis, G.2    Chiu, S.K.3    Reddy, G.4    Radding, C.M.5
  • 38
    • 34249000758 scopus 로고    scopus 로고
    • DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites
    • Liang J., Wang Z., He X., Li J., Zhou X., Deng Z. DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites. Nucleic Acids Res 2007, 35:2944-2954.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2944-2954
    • Liang, J.1    Wang, Z.2    He, X.3    Li, J.4    Zhou, X.5    Deng, Z.6
  • 39
    • 33645547831 scopus 로고    scopus 로고
    • Analysis of involvement of the RecF pathway in p44 recombination in Anaplasma phagocytophilum and in Escherichia coli by using a plasmid carrying the p44 expression and p44 donor loci
    • Lin Q., Zhang C., Rikihisa Y. Analysis of involvement of the RecF pathway in p44 recombination in Anaplasma phagocytophilum and in Escherichia coli by using a plasmid carrying the p44 expression and p44 donor loci. Infect Immun 2006, 74:2052-2062.
    • (2006) Infect Immun , vol.74 , pp. 2052-2062
    • Lin, Q.1    Zhang, C.2    Rikihisa, Y.3
  • 40
    • 0014216084 scopus 로고
    • An exonuclease induced by bacteriophage lambda II. Nature of the enzymatic reaction
    • Little J.W. An exonuclease induced by bacteriophage lambda II. Nature of the enzymatic reaction. J Biol Chem 1967, 242:679-686.
    • (1967) J Biol Chem , vol.242 , pp. 679-686
    • Little, J.W.1
  • 41
    • 32044431846 scopus 로고    scopus 로고
    • Feedback inhibition of chorismate mutase/prephenate dehydrogenase (TyrA) of Escherichia coli: generation and characterization of tyrosine-insensitive mutants
    • Lutke-Eversloh T., Stephanopoulos G. Feedback inhibition of chorismate mutase/prephenate dehydrogenase (TyrA) of Escherichia coli: generation and characterization of tyrosine-insensitive mutants. Appl Environ Microbiol 2005, 71:7224-7228.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7224-7228
    • Lutke-Eversloh, T.1    Stephanopoulos, G.2
  • 42
    • 0027228174 scopus 로고
    • In vivo studies on the interaction of RecBCD enzyme and lambda Gam protein
    • Marsic N., Roje S., Stojiljkovic I., Salaj-Smic E., Trgovcevic Z. In vivo studies on the interaction of RecBCD enzyme and lambda Gam protein. J Bacteriol 1993, 175:4738-4743.
    • (1993) J Bacteriol , vol.175 , pp. 4738-4743
    • Marsic, N.1    Roje, S.2    Stojiljkovic, I.3    Salaj-Smic, E.4    Trgovcevic, Z.5
  • 43
    • 84862225217 scopus 로고    scopus 로고
    • Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
    • McKee A.E., Rutherford B.J., Chivian D.C., Baidoo E.K., Juminaga D., Kuo D., et al. Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli. Microb Cell Fact 2012, 11:79.
    • (2012) Microb Cell Fact , vol.11 , pp. 79
    • McKee, A.E.1    Rutherford, B.J.2    Chivian, D.C.3    Baidoo, E.K.4    Juminaga, D.5    Kuo, D.6
  • 44
    • 0016626828 scopus 로고
    • Lambda repressor turns off transcription of its own gene
    • Meyer B.J., Kleid D.G., Ptashne M. Lambda repressor turns off transcription of its own gene. Proc Natl Acad Sci U S A 1975, 72:4785-4789.
    • (1975) Proc Natl Acad Sci U S A , vol.72 , pp. 4785-4789
    • Meyer, B.J.1    Kleid, D.G.2    Ptashne, M.3
  • 45
    • 78951480559 scopus 로고    scopus 로고
    • Lambda red recombineering in Escherichia coli occurs through a fully single-stranded intermediate
    • Mosberg J.A., Lajoie M.J., Church G.M. Lambda red recombineering in Escherichia coli occurs through a fully single-stranded intermediate. Genetics 2010, 186:791-799.
    • (2010) Genetics , vol.186 , pp. 791-799
    • Mosberg, J.A.1    Lajoie, M.J.2    Church, G.M.3
  • 46
    • 84866010111 scopus 로고    scopus 로고
    • Improving lambda red genome engineering in Escherichia coli via rational removal of endogenous nucleases
    • Mosberg J.A., Gregg C.J., Lajoie M.J., Wang H.H., Church G.M. Improving lambda red genome engineering in Escherichia coli via rational removal of endogenous nucleases. PLoS One 2012, 7:e44638.
    • (2012) PLoS One , vol.7
    • Mosberg, J.A.1    Gregg, C.J.2    Lajoie, M.J.3    Wang, H.H.4    Church, G.M.5
  • 47
    • 0031924072 scopus 로고    scopus 로고
    • Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli
    • Murphy K.C. Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J Bacteriol 1998, 180:2063-2071.
    • (1998) J Bacteriol , vol.180 , pp. 2063-2071
    • Murphy, K.C.1
  • 48
    • 1942480531 scopus 로고    scopus 로고
    • Lambda red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli
    • Murphy K.C., Campellone K.G. Lambda red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli. BMC Mol Biol 2003, 4:11.
    • (2003) BMC Mol Biol , vol.4 , pp. 11
    • Murphy, K.C.1    Campellone, K.G.2
  • 49
    • 0034603783 scopus 로고    scopus 로고
    • PCR-mediated gene replacement in Escherichia coli
    • Murphy K.C., Campellone K.G., Poteete A.R. PCR-mediated gene replacement in Escherichia coli. Gene 2000, 246:321-330.
    • (2000) Gene , vol.246 , pp. 321-330
    • Murphy, K.C.1    Campellone, K.G.2    Poteete, A.R.3
  • 50
    • 0033559118 scopus 로고    scopus 로고
    • Rapid modification of bacterial artificial chromosomes by ET-recombination
    • Muyrers J.P., Zhang Y., Testa G., Stewart A.F. Rapid modification of bacterial artificial chromosomes by ET-recombination. Nucleic Acids Res 1999, 27:1555-1557.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1555-1557
    • Muyrers, J.P.1    Zhang, Y.2    Testa, G.3    Stewart, A.F.4
  • 51
    • 0033624563 scopus 로고    scopus 로고
    • RecE/RecT and Redalpha/Redbeta initiate double-stranded break repair by specifically interacting with their respective partners
    • Muyrers J.P., Zhang Y., Buchholz F., Stewart A.F. RecE/RecT and Redalpha/Redbeta initiate double-stranded break repair by specifically interacting with their respective partners. Genes Dev 2000, 14:1971-1982.
    • (2000) Genes Dev , vol.14 , pp. 1971-1982
    • Muyrers, J.P.1    Zhang, Y.2    Buchholz, F.3    Stewart, A.F.4
  • 53
    • 79952002951 scopus 로고    scopus 로고
    • Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering
    • Sawitzke J.A., Costantino N., Li X.T., Thomason L.C., Bubunenko M., Court C., et al. Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering. J Mol Biol 2011, 407:45-59.
    • (2011) J Mol Biol , vol.407 , pp. 45-59
    • Sawitzke, J.A.1    Costantino, N.2    Li, X.T.3    Thomason, L.C.4    Bubunenko, M.5    Court, C.6
  • 54
    • 0023410420 scopus 로고
    • Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors
    • Schaaper R.M., Dunn R.L. Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors. Proc Natl Acad Sci U S A 1987, 84:6220-6224.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 6220-6224
    • Schaaper, R.M.1    Dunn, R.L.2
  • 55
    • 0035844990 scopus 로고    scopus 로고
    • Cell toxicity caused by products of the p(L) operon of bacteriophage lambda
    • Sergueev K., Yu D., Austin S., Court D. Cell toxicity caused by products of the p(L) operon of bacteriophage lambda. Gene 2001, 272:227-235.
    • (2001) Gene , vol.272 , pp. 227-235
    • Sergueev, K.1    Yu, D.2    Austin, S.3    Court, D.4
  • 56
    • 59849119654 scopus 로고    scopus 로고
    • Recombineering: a homologous recombination-based method of genetic engineering
    • Sharan S.K., Thomason L.C., Kuznetsov S.G., Court D.L. Recombineering: a homologous recombination-based method of genetic engineering. Nat Protoc 2009, 4:206-223.
    • (2009) Nat Protoc , vol.4 , pp. 206-223
    • Sharan, S.K.1    Thomason, L.C.2    Kuznetsov, S.G.3    Court, D.L.4
  • 57
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria
    • Simon R., Priefer U., Puhler A. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Nat Biotechnol 1983, 1:784-791.
    • (1983) Nat Biotechnol , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Puhler, A.3
  • 59
    • 84862527578 scopus 로고    scopus 로고
    • How RecBCD enzyme and Chi promote DNA break repair and recombination: a molecular biologist's view
    • Smith G.R. How RecBCD enzyme and Chi promote DNA break repair and recombination: a molecular biologist's view. Microbiol Mol Biol Rev MMBR 2012, 76:217-228.
    • (2012) Microbiol Mol Biol Rev MMBR , vol.76 , pp. 217-228
    • Smith, G.R.1
  • 61
    • 84858717996 scopus 로고    scopus 로고
    • Redox balance is key to explaining full vs. partial switching to low-yield metabolism
    • van Hoek M.J., Merks R.M. Redox balance is key to explaining full vs. partial switching to low-yield metabolism. BMC Syst Biol 2012, 6:22.
    • (2012) BMC Syst Biol , vol.6 , pp. 22
    • van Hoek, M.J.1    Merks, R.M.2
  • 62
    • 29644444283 scopus 로고    scopus 로고
    • An improved recombineering approach by adding RecA to lambda Red recombination
    • Wang J., Sarov M., Rientjes J., Fu J., Hollak H., Kranz H., et al. An improved recombineering approach by adding RecA to lambda Red recombination. Mol Biotechnol 2006, 32:43-53.
    • (2006) Mol Biotechnol , vol.32 , pp. 43-53
    • Wang, J.1    Sarov, M.2    Rientjes, J.3    Fu, J.4    Hollak, H.5    Kranz, H.6
  • 64
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang H.H., Isaacs F.J., Carr P.A., Sun Z.Z., Xu G., Forest C.R., et al. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6
  • 65
    • 79957439984 scopus 로고    scopus 로고
    • Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion
    • Wang H.H., Xu G., Vonner A.J., Church G. Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion. Nucleic Acids Res 2011, 39:7336-7347.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7336-7347
    • Wang, H.H.1    Xu, G.2    Vonner, A.J.3    Church, G.4
  • 66
    • 84863328748 scopus 로고    scopus 로고
    • Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multi-enzyme catalysis
    • Wang H.H., Huang P.Y., Xu G., Haas W., Marblestone A., Li J., et al. Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multi-enzyme catalysis. ACS Syst Synth Biol 2012, 1:43-52.
    • (2012) ACS Syst Synth Biol , vol.1 , pp. 43-52
    • Wang, H.H.1    Huang, P.Y.2    Xu, G.3    Haas, W.4    Marblestone, A.5    Li, J.6
  • 69
    • 0017037398 scopus 로고
    • Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli
    • Witkin E.M. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriol Rev 1976, 40:869-907.
    • (1976) Bacteriol Rev , vol.40 , pp. 869-907
    • Witkin, E.M.1
  • 70
    • 0041660878 scopus 로고    scopus 로고
    • A simple two-step, 'hit and fix' method to generate subtle mutations in BACs using short denatured PCR fragments
    • Yang Y., Sharan S.K. A simple two-step, 'hit and fix' method to generate subtle mutations in BACs using short denatured PCR fragments. Nucleic Acids Res 2003, 31:e80.
    • (2003) Nucleic Acids Res , vol.31
    • Yang, Y.1    Sharan, S.K.2
  • 71
    • 79959374585 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
    • Yim H., Haselbeck R., Niu W., Pujol-Baxley C., Burgard A., Boldt J., et al. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat Chem Biol 2011, 7:445-452.
    • (2011) Nat Chem Biol , vol.7 , pp. 445-452
    • Yim, H.1    Haselbeck, R.2    Niu, W.3    Pujol-Baxley, C.4    Burgard, A.5    Boldt, J.6
  • 73
    • 0038472057 scopus 로고    scopus 로고
    • Recombineering with overlapping single-stranded DNA oligonucleotides: testing a recombination intermediate
    • Yu D., Sawitzke J.A., Ellis H., Court D.L. Recombineering with overlapping single-stranded DNA oligonucleotides: testing a recombination intermediate. Proc Natl Acad Sci U S A 2003, 100:7207-7212.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7207-7212
    • Yu, D.1    Sawitzke, J.A.2    Ellis, H.3    Court, D.L.4
  • 74
    • 0031664853 scopus 로고    scopus 로고
    • A new logic for DNA engineering using recombination in Escherichia coli
    • Zhang Y., Buchholz F., Muyrers J.P., Stewart A.F. A new logic for DNA engineering using recombination in Escherichia coli. Nat Genet 1998, 20:123-128.
    • (1998) Nat Genet , vol.20 , pp. 123-128
    • Zhang, Y.1    Buchholz, F.2    Muyrers, J.P.3    Stewart, A.F.4
  • 75
    • 0033668496 scopus 로고    scopus 로고
    • DNA cloning by homologous recombination in Escherichia coli
    • Zhang Y., Muyrers J.P., Testa G., Stewart A.F. DNA cloning by homologous recombination in Escherichia coli. Nat Biotechnol 2000, 18:1314-1317.
    • (2000) Nat Biotechnol , vol.18 , pp. 1314-1317
    • Zhang, Y.1    Muyrers, J.P.2    Testa, G.3    Stewart, A.F.4


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