메뉴 건너뛰기




Volumn 31, Issue 7, 2015, Pages 1120-1123

CRISPRdirect: Software for designing CRISPR/Cas guide RNA with reduced off-target sites

Author keywords

[No Author keywords available]

Indexed keywords

ANURA; ARABIDOPSIS; BOMBYX MORI; CAENORHABDITIS ELEGANS; CIONA; DANIO RERIO; MARMOSETS; RATTUS; SACCHAROMYCETALES; SUIDAE;

EID: 84929142256     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu743     Document Type: Article
Times cited : (910)

References (21)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 2
    • 84896308706 scopus 로고    scopus 로고
    • Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
    • Bae, S. et al. (2014) Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics, 30, 1473-1475.
    • (2014) Bioinformatics , vol.30 , pp. 1473-1475
    • Bae, S.1
  • 3
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • Cho, S.W. et al. (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol., 31, 230-232.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 230-232
    • Cho, S.W.1
  • 4
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science, 339, 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 5
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-cas nucleases in human cells
    • Fu, Y. et al. (2013) High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat. Biotechnol., 31, 822-826.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 822-826
    • Fu, Y.1
  • 6
    • 84902210542 scopus 로고    scopus 로고
    • Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification
    • Guilinger, J.P. et al. (2014) Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Nat. Biotechnol., 32, 577-582.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 577-582
    • Guilinger, J.P.1
  • 7
    • 84893287073 scopus 로고    scopus 로고
    • E-CRISP: Fast CRISPR target site identification
    • Heigwer, F. et al. (2014) E-CRISP: fast CRISPR target site identification. Nat. Methods, 11, 122-123.
    • (2014) Nat. Methods , vol.11 , pp. 122-123
    • Heigwer, F.1
  • 8
    • 84884165315 scopus 로고    scopus 로고
    • DNA targeting specificity of RNA-guided Cas9 nucleases
    • Hsu, P.D. et al. (2013) DNA targeting specificity of RNA-guided Cas9 nucleases. Nat. Biotechnol., 31, 827-832.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 827-832
    • Hsu, P.D.1
  • 9
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • Jinek, M. et al. (2013) RNA-programmed genome editing in human cells. eLife, 2, e00471.
    • (2013) ELife , vol.2 , pp. e00471
    • Jinek, M.1
  • 10
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 11
    • 84903138336 scopus 로고    scopus 로고
    • CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences
    • Lin, Y. et al. (2014) CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences. Nucleic Acids Res., 42, 7473-7485.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 7473-7485
    • Lin, Y.1
  • 12
    • 84886513724 scopus 로고    scopus 로고
    • A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes
    • Ma, M. et al. (2013) A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes. Biomed. Res. Int., 2013, 270805.
    • (2013) Biomed. Res. Int. , vol.2013 , pp. 270805
    • Ma, M.1
  • 13
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P. et al. (2013) RNA-guided human genome engineering via Cas9. Science, 339, 823-826.
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 14
    • 79952592810 scopus 로고    scopus 로고
    • A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
    • Marçais, G. and Kingsford, C. (2011) A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics, 27, 764-770.
    • (2011) Bioinformatics , vol.27 , pp. 764-770
    • Marçais, G.1    Kingsford, C.2
  • 15
    • 84904813279 scopus 로고    scopus 로고
    • CHOPCHOP: A CRISPR/Cas9 and TALEN web tool for genome editing
    • Montague, T.G. et al. (2014) CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. Nucleic Acids Res., 42, W401-W407.
    • (2014) Nucleic Acids Res. , vol.42 , pp. W401-W407
    • Montague, T.G.1
  • 16
    • 3242889236 scopus 로고    scopus 로고
    • SiDirect: Highly effective, target-specific siRNA design software for mammalian RNA interference
    • Naito, Y. et al. (2004) siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. Nucleic Acids Res., 32, W124-W129.
    • (2004) Nucleic Acids Res. , vol.32 , pp. W124-W129
    • Naito, Y.1
  • 17
    • 84884155038 scopus 로고    scopus 로고
    • High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity
    • Pattanayak, V. et al. (2013) High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat. Biotechnol., 31, 839-843.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 839-843
    • Pattanayak, V.1
  • 18
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran, F.A. et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell, 154, 1380-1389.
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1
  • 19
    • 77954295352 scopus 로고    scopus 로고
    • ZiFiT (Zinc Finger Targeter): An updated zinc finger engineering tool
    • Sander, J.D. et al. (2010) ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Res., 38, W462-W468.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W462-W468
    • Sander, J.D.1
  • 20
    • 84902204289 scopus 로고    scopus 로고
    • Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
    • Tsai, S.Q. et al. (2014) Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat. Biotechnol., 32, 569-576.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 569-576
    • Tsai, S.Q.1
  • 21
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang, T. et al. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.