-
1
-
-
84928821944
-
Update on non-canonical microRNAs
-
Abdelfattah, A. M., Park, C., and Choi, M. Y. (2014). Update on non-canonical microRNAs. Biomol. Concepts 5, 275-287. doi: 10.1515/bmc-2014-0012.
-
(2014)
Biomol. Concepts
, vol.5
, pp. 275-287
-
-
Abdelfattah, A.M.1
Park, C.2
Choi, M.Y.3
-
2
-
-
65649106561
-
Prediction of guide strand of microRNAs from its sequence and secondary structure
-
Ahmed, F., Ansari, H. R., and Raghava, G. P. S. (2009). Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics 10:105. doi: 10.1186/1471-2105-10-105.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 105
-
-
Ahmed, F.1
Ansari, H.R.2
Raghava, G.P.S.3
-
3
-
-
84885338088
-
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors
-
Ahmed, F., Kaundal, R., and Raghava, G. P. S. (2013). PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics 14(Suppl. 14):S9. doi: 10.1186/1471-2105-14-S14-S9.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. S9
-
-
Ahmed, F.1
Kaundal, R.2
Raghava, G.P.S.3
-
4
-
-
84874086395
-
Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing
-
Auyeung, V. C., Ulitsky, I., McGeary, S. E., and Bartel, D. P. (2013). Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing. Cell 152, 844-858. doi: 10.1016/j.cell.2013.01.031.
-
(2013)
Cell
, vol.152
, pp. 844-858
-
-
Auyeung, V.C.1
Ulitsky, I.2
McGeary, S.E.3
Bartel, D.P.4
-
5
-
-
77951164018
-
Differential regulation of microRNA stability
-
Bail, S., Swerdel, M., Liu, H., Jiao, X., Goff, L. A., Hart, R. P., et al. (2010). Differential regulation of microRNA stability. RNA 16, 1032-1039. doi: 10.1261/rna.1851510.
-
(2010)
RNA
, vol.16
, pp. 1032-1039
-
-
Bail, S.1
Swerdel, M.2
Liu, H.3
Jiao, X.4
Goff, L.A.5
Hart, R.P.6
-
6
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel, D. P. (2009). MicroRNAs: target recognition and regulatory functions. Cell 136, 215-233. doi: 10.1016/j.cell.2009.01.002.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
7
-
-
13944260434
-
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
-
Baskerville, S., and Bartel, D. P. (2005). Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11, 241-247. doi: 10.1261/rna.7240905.
-
(2005)
RNA
, vol.11
, pp. 241-247
-
-
Baskerville, S.1
Bartel, D.P.2
-
8
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein, E., Caudy, A. A., Hammond, S. M., and Hannon, G. J. (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366. doi: 10.1038/35053110.
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
9
-
-
79957622234
-
miRvar: a comprehensive database for genomic variations in microRNAs
-
Bhartiya, D., Laddha, S. V., Mukhopadhyay, A., and Scaria, V. (2011). miRvar: a comprehensive database for genomic variations in microRNAs. Hum. Mutat. 32, E2226-E2245. doi: 10.1002/humu.21482.
-
(2011)
Hum. Mutat
, vol.32
, pp. E2226-E2245
-
-
Bhartiya, D.1
Laddha, S.V.2
Mukhopadhyay, A.3
Scaria, V.4
-
10
-
-
84891770518
-
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways
-
Bhattacharya, A., Ziebarth, J. D., and Cui, Y. (2014). PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. Nucleic Acids Res. 42, D86-D91. doi: 10.1093/nar/gkt1028.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D86-D91
-
-
Bhattacharya, A.1
Ziebarth, J.D.2
Cui, Y.3
-
11
-
-
1642499415
-
Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs
-
Bohnsack, M. T., Czaplinski, K., and Gorlich, D. (2004). Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA 10, 185-191. doi: 10.1261/rna.5167604.
-
(2004)
RNA
, vol.10
, pp. 185-191
-
-
Bohnsack, M.T.1
Czaplinski, K.2
Gorlich, D.3
-
12
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin, G. A., and Croce, C. M. (2006). MicroRNA signatures in human cancers. Nat. Rev. Cancer 6, 857-866. doi: 10.1038/nrc1997.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
13
-
-
27244434788
-
A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia
-
Calin, G. A., Ferracin, M., Cimmino, A., Di Leva, G., Shimizu, M., Wojcik, S. E., et al. (2005). A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. N. Engl. J. Med. 353, 1793-1801. doi: 10.1056/NEJMoa050995.
-
(2005)
N. Engl. J. Med
, vol.353
, pp. 1793-1801
-
-
Calin, G.A.1
Ferracin, M.2
Cimmino, A.3
Di Leva, G.4
Shimizu, M.5
Wojcik, S.E.6
-
14
-
-
84874631107
-
Concordant and discordant regulation of target genes by miR-31 and its isoforms
-
Chan, Y.-T., Lin, Y.-C., Lin, R.-J., Kuo, H.-H., Thang, W.-C., Chiu, K.-P., et al. (2013). Concordant and discordant regulation of target genes by miR-31 and its isoforms. PLoS ONE 8:e58169. doi: 10.1371/journal.pone.0058169.
-
(2013)
PLoS ONE
, vol.8
-
-
Chan, Y.-T.1
Lin, Y.-C.2
Lin, R.-J.3
Kuo, H.-H.4
Thang, W.-C.5
Chiu, K.-P.6
-
15
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
Chen, C.-Z., Li, L., Lodish, H. F., and Bartel, D. P. (2004). MicroRNAs modulate hematopoietic lineage differentiation. Science 303, 83-86. doi: 10.1126/science.1091903.
-
(2004)
Science
, vol.303
, pp. 83-86
-
-
Chen, C.-Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
16
-
-
84938995518
-
YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research
-
Cheng, W.-C., Chung, I.-F., Tsai, C.-F., Huang, T.-S., Chen, C.-Y., Wang, S.-C., et al. (2015). YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research. Nucleic Acids Res. 43, D862-D867. doi: 10.1093/nar/gku1156.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D862-D867
-
-
Cheng, W.-C.1
Chung, I.-F.2
Tsai, C.-F.3
Huang, T.-S.4
Chen, C.-Y.5
Wang, S.-C.6
-
17
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi, S. W., Zang, J. B., Mele, A., and Darnell, R. B. (2009). Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460, 479-486. doi: 10.1038/nature08170.
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
18
-
-
84855168259
-
MicroRNAs and their isomiRs function cooperatively to target common biological pathways
-
Cloonan, N., Wani, S., Xu, Q., Gu, J., Lea, K., Heater, S., et al. (2011). MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biol. 12:R126. doi: 10.1186/gb-2011-12-12-r126.
-
(2011)
Genome Biol
, vol.12
, pp. R126
-
-
Cloonan, N.1
Wani, S.2
Xu, Q.3
Gu, J.4
Lea, K.5
Heater, S.6
-
19
-
-
78650306521
-
Small RNA sorting: matchmaking for Argonautes
-
Czech, B., and Hannon, G. J. (2011). Small RNA sorting: matchmaking for Argonautes. Nat. Rev. Genet. 12, 19-31. doi: 10.1038/nrg2916.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 19-31
-
-
Czech, B.1
Hannon, G.J.2
-
20
-
-
84878769614
-
Aspirin treatment hampers the use of plasma microRNA-126 as a biomarker for the progression of vascular disease
-
de Boer, H. C., van Solingen, C., Prins, J., Duijs, J. M. G. J., Huisman, M. V., Rabelink, T. J., et al. (2013). Aspirin treatment hampers the use of plasma microRNA-126 as a biomarker for the progression of vascular disease. Eur. Heart J. 34, 3451-3457. doi: 10.1093/eurheartj/eht007.
-
(2013)
Eur. Heart J
, vol.34
, pp. 3451-3457
-
-
de Boer, H.C.1
van Solingen, C.2
Prins, J.3
Duijs, J.M.G.J.4
Huisman, M.V.5
Rabelink, T.J.6
-
21
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli, A. M., Tops, B. B. J., Plasterk, R. H. A., Ketting, R. F., and Hannon, G. J. (2004). Processing of primary microRNAs by the Microprocessor complex. Nature 432, 231-235. doi: 10.1038/nature03049.
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.J.2
Plasterk, R.H.A.3
Ketting, R.F.4
Hannon, G.J.5
-
22
-
-
33745700209
-
Sequence variations of microRNAs in human cancer: alterations in predicted secondary structure do not affect processing
-
Diederichs, S., and Haber, D. A. (2006). Sequence variations of microRNAs in human cancer: alterations in predicted secondary structure do not affect processing. Cancer Res. 66, 6097-6104. doi: 10.1158/0008-5472.CAN-06-0537.
-
(2006)
Cancer Res
, vol.66
, pp. 6097-6104
-
-
Diederichs, S.1
Haber, D.A.2
-
23
-
-
34447319406
-
Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
-
Duan, R., Pak, C., and Jin, P. (2007). Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum. Mol. Genet. 16, 1124-1131. doi: 10.1093/hmg/ddm062.
-
(2007)
Hum. Mol. Genet
, vol.16
, pp. 1124-1131
-
-
Duan, R.1
Pak, C.2
Jin, P.3
-
24
-
-
77955119567
-
DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures
-
Faller, M., Toso, D., Matsunaga, M., Atanasov, I., Senturia, R., Chen, Y., et al. (2010). DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures. RNA 16, 1570-1583. doi: 10.1261/rna.2111310.
-
(2010)
RNA
, vol.16
, pp. 1570-1583
-
-
Faller, M.1
Toso, D.2
Matsunaga, M.3
Atanasov, I.4
Senturia, R.5
Chen, Y.6
-
25
-
-
84884898026
-
miR-125b acts as a tumor suppressor in breast tumorigenesis via its novel direct targets ENPEP, CK2-a, CCNJ, and MEGF9
-
Feliciano, A., Castellvi, J., Artero-Castro, A., Leal, J. A., Romagosa, C., Hernández-Losa, J., et al. (2013). miR-125b acts as a tumor suppressor in breast tumorigenesis via its novel direct targets ENPEP, CK2-a, CCNJ, and MEGF9. PLoS ONE 8:e76247. doi: 10.1371/journal.pone.0076247.
-
(2013)
PLoS ONE
, vol.8
-
-
Feliciano, A.1
Castellvi, J.2
Artero-Castro, A.3
Leal, J.A.4
Romagosa, C.5
Hernández-Losa, J.6
-
26
-
-
67651241751
-
Evidence for X-chromosomal schizophrenia associated with microRNA alterations
-
Feng, J., Sun, G., Yan, J., Noltner, K., Li, W., Buzin, C. H., et al. (2009). Evidence for X-chromosomal schizophrenia associated with microRNA alterations. PLoS ONE 4:e6121. doi: 10.1371/journal.pone.0006121.
-
(2009)
PLoS ONE
, vol.4
-
-
Feng, J.1
Sun, G.2
Yan, J.3
Noltner, K.4
Li, W.5
Buzin, C.H.6
-
27
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
-
Filipowicz, W., Bhattacharyya, S. N., and Sonenberg, N. (2008). Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat. Rev. Genet. 9, 102-114. doi: 10.1038/nrg2290.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
28
-
-
84899794728
-
Evidence for the biogenesis of more than 1,000 novel human microRNAs
-
Friedländer, M. R., Lizano, E., Houben, A. J. S., Bezdan, D., Báñez-Coronel, M., Kudla, G., et al. (2014). Evidence for the biogenesis of more than 1,000 novel human microRNAs. Genome Biol. 15:R57. doi: 10.1186/gb-2014-15-4-r57.
-
(2014)
Genome Biol
, vol.15
, pp. R57
-
-
Friedländer, M.R.1
Lizano, E.2
Houben, A.J.S.3
Bezdan, D.4
Báñez-Coronel, M.5
Kudla, G.6
-
29
-
-
84880416653
-
No association of functional variant in pri-miR-218 and risk of congenital heart disease in a Chinese population
-
Gao, X., Yang, L., Ma, Y., Yang, J., Zhang, G., Huang, G., et al. (2013). No association of functional variant in pri-miR-218 and risk of congenital heart disease in a Chinese population. Gene 523, 173-177. doi: 10.1016/j.gene.2013.03.119.
-
(2013)
Gene
, vol.523
, pp. 173-177
-
-
Gao, X.1
Yang, L.2
Ma, Y.3
Yang, J.4
Zhang, G.5
Huang, G.6
-
30
-
-
84857691987
-
Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis
-
Gong, J., Tong, Y., Zhang, H.-M., Wang, K., Hu, T., Shan, G., et al. (2012). Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Hum. Mutat. 33, 254-263. doi: 10.1002/humu.21641.
-
(2012)
Hum. Mutat
, vol.33
, pp. 254-263
-
-
Gong, J.1
Tong, Y.2
Zhang, H.-M.3
Wang, K.4
Hu, T.5
Shan, G.6
-
31
-
-
9144225636
-
The Microprocessor complex mediates the genesis of microRNAs
-
Gregory, R. I., Yan, K.-P., Amuthan, G., Chendrimada, T., Doratotaj, B., Cooch, N., et al. (2004). The Microprocessor complex mediates the genesis of microRNAs. Nature 432, 235-240. doi: 10.1038/nature03120.
-
(2004)
Nature
, vol.432
, pp. 235-240
-
-
Gregory, R.I.1
Yan, K.-P.2
Amuthan, G.3
Chendrimada, T.4
Doratotaj, B.5
Cooch, N.6
-
32
-
-
17844364875
-
Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
-
Grishok, A., Pasquinelli, A. E., Conte, D., Li, N., Parrish, S., Ha, I., et al. (2001). Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106, 23-34. doi: 10.1016/S0092-8674(01)00431-7.
-
(2001)
Cell
, vol.106
, pp. 23-34
-
-
Grishok, A.1
Pasquinelli, A.E.2
Conte, D.3
Li, N.4
Parrish, S.5
Ha, I.6
-
33
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A. R., Lorenz, R., Bernhart, S. H., Neuböck, R., and Hofacker, I. L. (2008). The Vienna RNA websuite. Nucleic Acids Res. 36, W70-W74. doi: 10.1093/nar/gkn188.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W70-W74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuböck, R.4
Hofacker, I.L.5
-
34
-
-
84869037267
-
The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo
-
Gu, S., Jin, L., Zhang, Y., Huang, Y., Zhang, F., Valdmanis, P. N., et al. (2012). The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo. Cell 151, 900-911. doi: 10.1016/j.cell.2012.09.042.
-
(2012)
Cell
, vol.151
, pp. 900-911
-
-
Gu, S.1
Jin, L.2
Zhang, Y.3
Huang, Y.4
Zhang, F.5
Valdmanis, P.N.6
-
35
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., et al. (2010). Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141, 129-141. doi: 10.1016/j.cell.2010.03.009.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
-
36
-
-
70349820140
-
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells
-
Hagan, J. P., Piskounova, E., and Gregory, R. I. (2009). Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells. Nat. Struct. Mol. Biol. 16, 1021-1025. doi: 10.1038/nsmb.1676.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 1021-1025
-
-
Hagan, J.P.1
Piskounova, E.2
Gregory, R.I.3
-
37
-
-
10644234841
-
The Drosha-DGCR8 complex in primary microRNA processing
-
Han, J., Lee, Y., Yeom, K.-H., Kim, Y.-K., Jin, H., and Kim, V. N. (2004). The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev. 18, 3016-3027. doi: 10.1101/gad.1262504.
-
(2004)
Genes Dev
, vol.18
, pp. 3016-3027
-
-
Han, J.1
Lee, Y.2
Yeom, K.-H.3
Kim, Y.-K.4
Jin, H.5
Kim, V.N.6
-
38
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han, J., Lee, Y., Yeom, K.-H., Nam, J.-W., Heo, I., Rhee, J.-K., et al. (2006). Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125, 887-901. doi: 10.1016/j.cell.2006.03.043.
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.-H.3
Nam, J.-W.4
Heo, I.5
Rhee, J.-K.6
-
39
-
-
84892418266
-
Comprehensive analysis of single nucleotide polymorphisms in human microRNAs
-
Han, M., and Zheng, Y. (2013). Comprehensive analysis of single nucleotide polymorphisms in human microRNAs. PLoS ONE 8:e78028. doi: 10.1371/journal.pone.0078028.
-
(2013)
PLoS ONE
, vol.8
-
-
Han, M.1
Zheng, Y.2
-
40
-
-
84876935138
-
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
-
Helwak, A., Kudla, G., Dudnakova, T., and Tollervey, D. (2013). Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell 153, 654-665. doi: 10.1016/j.cell.2013.03.043.
-
(2013)
Cell
, vol.153
, pp. 654-665
-
-
Helwak, A.1
Kudla, G.2
Dudnakova, T.3
Tollervey, D.4
-
41
-
-
84868153864
-
Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs
-
Heo, I., Ha, M., Lim, J., Yoon, M.-J., Park, J.-E., Kwon, S. C., et al. (2012). Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs. Cell 151, 521-532. doi: 10.1016/j.cell.2012.09.022.
-
(2012)
Cell
, vol.151
, pp. 521-532
-
-
Heo, I.1
Ha, M.2
Lim, J.3
Yoon, M.-J.4
Park, J.-E.5
Kwon, S.C.6
-
42
-
-
53949088050
-
Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA
-
Heo, I., Joo, C., Cho, J., Ha, M., Han, J., and Kim, V. N. (2008). Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA. Mol. Cell 32, 276-284. doi: 10.1016/j.molcel.2008.09.014.
-
(2008)
Mol. Cell
, vol.32
, pp. 276-284
-
-
Heo, I.1
Joo, C.2
Cho, J.3
Ha, M.4
Han, J.5
Kim, V.N.6
-
43
-
-
68749102148
-
TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation
-
Heo, I., Joo, C., Kim, Y.-K., Ha, M., Yoon, M.-J., Cho, J., et al. (2009). TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation. Cell 138, 696-708. doi: 10.1016/j.cell.2009.08.002.
-
(2009)
Cell
, vol.138
, pp. 696-708
-
-
Heo, I.1
Joo, C.2
Kim, Y.-K.3
Ha, M.4
Yoon, M.-J.5
Cho, J.6
-
44
-
-
70350271175
-
Sequence features associated with microRNA strand selection in humans and flies
-
Hu, H. Y., Yan, Z., Xu, Y., Hu, H., Menzel, C., Zhou, Y. H., et al. (2009). Sequence features associated with microRNA strand selection in humans and flies. BMC Genomics 10:413. doi: 10.1186/1471-2164-10-413.
-
(2009)
BMC Genomics
, vol.10
, pp. 413
-
-
Hu, H.Y.1
Yan, Z.2
Xu, Y.3
Hu, H.4
Menzel, C.5
Zhou, Y.H.6
-
45
-
-
84907918081
-
Involvement of inflammation-related miR-155 and miR-146a in diabetic nephropathy: implications for glomerular endothelial injury
-
Huang, Y., Liu, Y., Li, L., Su, B., Yang, L., Fan, W., et al. (2014). Involvement of inflammation-related miR-155 and miR-146a in diabetic nephropathy: implications for glomerular endothelial injury. BMC Nephrol. 15:142. doi: 10.1186/1471-2369-15-142.
-
(2014)
BMC Nephrol
, vol.15
, pp. 142
-
-
Huang, Y.1
Liu, Y.2
Li, L.3
Su, B.4
Yang, L.5
Fan, W.6
-
46
-
-
80955145750
-
Mutation altering the miR-184 seed region causes familial keratoconus with cataract
-
Hughes, A. E., Bradley, D. T., Campbell, M., Lechner, J., Dash, D. P., Simpson, D. A., et al. (2011). Mutation altering the miR-184 seed region causes familial keratoconus with cataract. Am. J. Hum. Genet. 89, 628-633. doi: 10.1016/j.ajhg.2011.09.014.
-
(2011)
Am. J. Hum. Genet
, vol.89
, pp. 628-633
-
-
Hughes, A.E.1
Bradley, D.T.2
Campbell, M.3
Lechner, J.4
Dash, D.P.5
Simpson, D.A.6
-
47
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvágner, G., McLachlan, J., Pasquinelli, A. E., Bálint, E., Tuschl, T., and Zamore, P. D. (2001). A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293, 834-838. doi: 10.1126/science.1062961.
-
(2001)
Science
, vol.293
, pp. 834-838
-
-
Hutvágner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Bálint, E.4
Tuschl, T.5
Zamore, P.D.6
-
48
-
-
80055088409
-
Feed-forward microprocessing and splicing activities at a microRNA-containing intron
-
Janas, M. M., Khaled, M., Schubert, S., Bernstein, J. G., Golan, D., Veguilla, R. A., et al. (2011). Feed-forward microprocessing and splicing activities at a microRNA-containing intron. PLoS Genet. 7:e1002330. doi: 10.1371/journal.pgen.1002330.
-
(2011)
PLoS Genet
, vol.7
-
-
Janas, M.M.1
Khaled, M.2
Schubert, S.3
Bernstein, J.G.4
Golan, D.5
Veguilla, R.A.6
-
49
-
-
60849084449
-
Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer
-
Jazdzewski, K., Liyanarachchi, S., Swierniak, M., Pachucki, J., Ringel, M. D., Jarzab, B., et al. (2009). Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer. Proc. Natl. Acad. Sci. U.S.A. 106, 1502-1505. doi: 10.1073/pnas.0812591106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 1502-1505
-
-
Jazdzewski, K.1
Liyanarachchi, S.2
Swierniak, M.3
Pachucki, J.4
Ringel, M.D.5
Jarzab, B.6
-
50
-
-
44449153200
-
Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma
-
Jazdzewski, K., Murray, E. L., Franssila, K., Jarzab, B., Schoenberg, D. R., and de la Chapelle, A. (2008). Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma. Proc. Natl. Acad. Sci. U.S.A. 105, 7269-7274. doi: 10.1073/pnas.0802682105.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 7269-7274
-
-
Jazdzewski, K.1
Murray, E.L.2
Franssila, K.3
Jarzab, B.4
Schoenberg, D.R.5
de la Chapelle, A.6
-
51
-
-
84865618700
-
Genome-wide microRNA profiling of human temporal lobe epilepsy identifies modulators of the immune response
-
Kan, A. A., van Erp, S., Derijck, A. A. H. A., de Wit, M., Hessel, E. V. S., O'Duibhir, E., et al. (2012). Genome-wide microRNA profiling of human temporal lobe epilepsy identifies modulators of the immune response. Cell. Mol. Life Sci. 69, 3127-3145. doi: 10.1007/s00018-012-0992-7.
-
(2012)
Cell. Mol. Life Sci
, vol.69
, pp. 3127-3145
-
-
Kan, A.A.1
van Erp, S.2
Derijck, A.A.H.A.3
de Wit, M.4
Hessel, E.V.S.5
O'Duibhir, E.6
-
52
-
-
84894431229
-
Human diseases caused by germline and somatic abnormalities in microRNA and microRNA-related genes
-
Kawahara, Y. (2014). Human diseases caused by germline and somatic abnormalities in microRNA and microRNA-related genes. Congenit. Anom. (Kyoto) 54, 12-21. doi: 10.1111/cga.12043.
-
(2014)
Congenit. Anom. (Kyoto)
, vol.54
, pp. 12-21
-
-
Kawahara, Y.1
-
53
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
Kawahara, Y., Zinshteyn, B., Sethupathy, P., Iizasa, H., Hatzigeorgiou, A. G., and Nishikura, K. (2007). Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 315, 1137-1140. doi: 10.1126/science.1138050.
-
(2007)
Science
, vol.315
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
54
-
-
80053367552
-
Toward the blood-borne miRNome of human diseases
-
Keller, A., Leidinger, P., Bauer, A., Elsharawy, A., Haas, J., Backes, C., et al. (2011). Toward the blood-borne miRNome of human diseases. Nat. Methods 8, 841-843. doi: 10.1038/nmeth.1682.
-
(2011)
Nat. Methods
, vol.8
, pp. 841-843
-
-
Keller, A.1
Leidinger, P.2
Bauer, A.3
Elsharawy, A.4
Haas, J.5
Backes, C.6
-
55
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
Ketting, R. F., Fischer, S. E., Bernstein, E., Sijen, T., Hannon, G. J., and Plasterk, R. H. (2001). Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 15, 2654-2659. doi: 10.1101/gad.927801.
-
(2001)
Genes Dev
, vol.15
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.6
-
56
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova, A., Reynolds, A., and Jayasena, S. D. (2003). Functional siRNAs and miRNAs exhibit strand bias. Cell 115, 209-216. doi: 10.1016/S0092-8674(03)00801-8.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
57
-
-
0035929322
-
A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans
-
Knight, S. W., and Bass, B. L. (2001). A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans. Science 293, 2269-2271. doi: 10.1126/science.1062039.
-
(2001)
Science
, vol.293
, pp. 2269-2271
-
-
Knight, S.W.1
Bass, B.L.2
-
58
-
-
84891818318
-
miRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42, D68-D73. doi: 10.1093/nar/gkt1181.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
59
-
-
79959946169
-
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
-
Kudla, G., Granneman, S., Hahn, D., Beggs, J. D., and Tollervey, D. (2011). Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc. Natl. Acad. Sci. U.S.A. 108, 10010-10015. doi: 10.1073/pnas.1017386108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A
, vol.108
, pp. 10010-10015
-
-
Kudla, G.1
Granneman, S.2
Hahn, D.3
Beggs, J.D.4
Tollervey, D.5
-
60
-
-
84865837750
-
Discovery of hundreds of mirtrons in mouse and human small RNA data
-
Ladewig, E., Okamura, K., Flynt, A. S., Westholm, J. O., and Lai, E. C. (2012). Discovery of hundreds of mirtrons in mouse and human small RNA data. Genome Res. 22, 1634-1645. doi: 10.1101/gr.133553.111.
-
(2012)
Genome Res
, vol.22
, pp. 1634-1645
-
-
Ladewig, E.1
Okamura, K.2
Flynt, A.S.3
Westholm, J.O.4
Lai, E.C.5
-
61
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana, M., Rauhut, R., Lendeckel, W., and Tuschl, T. (2001). Identification of novel genes coding for small expressed RNAs. Science 294, 853-858. doi: 10.1126/science.1064921.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
62
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf, P., Rusu, M., Sheridan, R., Sewer, A., Iovino, N., Aravin, A., et al. (2007). A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129, 1401-1414. doi: 10.1016/j.cell.2007.04.040.
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
-
63
-
-
10344248903
-
The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis
-
Landthaler, M., Yalcin, A., and Tuschl, T. (2004). The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis. Curr. Biol. 14, 2162-2167. doi: 10.1016/j.cub.2004.11.001.
-
(2004)
Curr. Biol
, vol.14
, pp. 2162-2167
-
-
Landthaler, M.1
Yalcin, A.2
Tuschl, T.3
-
64
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau, N. C., Lim, L. P., Weinstein, E. G., and Bartel, D. P. (2001). An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294, 858-862. doi: 10.1126/science.1065062.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
65
-
-
84880411222
-
Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing
-
Lee, H. Y., Zhou, K., Smith, A. M., Noland, C. L., and Doudna, J. A. (2013). Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing. Nucleic Acids Res. 41, 6568-6576. doi: 10.1093/nar/gkt361.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 6568-6576
-
-
Lee, H.Y.1
Zhou, K.2
Smith, A.M.3
Noland, C.L.4
Doudna, J.A.5
-
66
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee, R. C., and Ambros, V. (2001). An extensive class of small RNAs in Caenorhabditis elegans. Science 294, 862-864. doi: 10.1126/science.1065329.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
67
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R. C., Feinbaum, R. L., and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843-854. doi: 10.1016/0092-8674(93)90529-Y.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
68
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee, Y., Ahn, C., Han, J., Choi, H., Kim, J., Yim, J., et al. (2003). The nuclear RNase III Drosha initiates microRNA processing. Nature 425, 415-419. doi: 10.1038/nature01957.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
-
69
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim, L. P., Lau, N. C., Garrett-Engele, P., Grimson, A., Schelter, J. M., Castle, J., et al. (2005). Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433, 769-773. doi: 10.1038/nature03315.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
-
70
-
-
84863245920
-
A genetic variant in the promoter region of miR-106b-25 cluster and risk of HBV infection and hepatocellular carcinoma
-
Liu, Y., Zhang, Y., Wen, J., Liu, L., Zhai, X., Liu, J., et al. (2012). A genetic variant in the promoter region of miR-106b-25 cluster and risk of HBV infection and hepatocellular carcinoma. PLoS ONE 7:e32230. doi: 10.1371/journal.pone.0032230.
-
(2012)
PLoS ONE
, vol.7
-
-
Liu, Y.1
Zhang, Y.2
Wen, J.3
Liu, L.4
Zhai, X.5
Liu, J.6
-
71
-
-
84873701078
-
A highly expressed miR-101 isomiR is a functional silencing small RNA
-
Llorens, F., Bañez-Coronel, M., Pantano, L., del Río, J. A., Ferrer, I., Estivill, X., et al. (2013). A highly expressed miR-101 isomiR is a functional silencing small RNA. BMC Genomics 14:104. doi: 10.1186/1471-2164-14-104.
-
(2013)
BMC Genomics
, vol.14
, pp. 104
-
-
Llorens, F.1
Bañez-Coronel, M.2
Pantano, L.3
del Río, J.A.4
Ferrer, I.5
Estivill, X.6
-
72
-
-
84924388328
-
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs
-
Londin, E., Loher, P., Telonis, A. G., Quann, K., Clark, P., Jing, Y., et al. (2015). Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs. Proc. Natl. Acad. Sci. U.S.A. 112, E1106-E1115. doi: 10.1073/pnas.1420955112.
-
(2015)
Proc. Natl. Acad. Sci. U.S.A
, vol.112
, pp. E1106-E1115
-
-
Londin, E.1
Loher, P.2
Telonis, A.G.3
Quann, K.4
Clark, P.5
Jing, Y.6
-
73
-
-
34250677322
-
Substrate selectivity of exportin 5 and Dicer in the biogenesis of microRNAs
-
Lund, E., and Dahlberg, J. E. (2006). Substrate selectivity of exportin 5 and Dicer in the biogenesis of microRNAs. Cold Spring Harb. Symp. Quant. Biol. 71, 59-66. doi: 10.1101/sqb.2006.71.050.
-
(2006)
Cold Spring Harb. Symp. Quant. Biol
, vol.71
, pp. 59-66
-
-
Lund, E.1
Dahlberg, J.E.2
-
74
-
-
0347988235
-
Nuclear export of microRNA precursors
-
Lund, E., Güttinger, S., Calado, A., Dahlberg, J. E., and Kutay, U. (2004). Nuclear export of microRNA precursors. Science 303, 95-98. doi: 10.1126/science.1090599.
-
(2004)
Science
, vol.303
, pp. 95-98
-
-
Lund, E.1
Güttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
75
-
-
79959836816
-
A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus
-
Luo, X., Yang, W., Ye, D.-Q., Cui, H., Zhang, Y., Hirankarn, N., et al. (2011). A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus. PLoS Genet. 7:e1002128. doi: 10.1371/journal.pgen.1002128.
-
(2011)
PLoS Genet
, vol.7
-
-
Luo, X.1
Yang, W.2
Ye, D.-Q.3
Cui, H.4
Zhang, Y.5
Hirankarn, N.6
-
76
-
-
84890835664
-
Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site
-
Ma, H., Wu, Y., Choi, J.-G., and Wu, H. (2013). Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site. Proc. Natl. Acad. Sci. U.S.A. 110, 20687-20692. doi: 10.1073/pnas.1311639110.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 20687-20692
-
-
Ma, H.1
Wu, Y.2
Choi, J.-G.3
Wu, H.4
-
77
-
-
79952898846
-
Identification of blood microRNAs associated to Parkinsonis disease
-
Margis, R., Margis, R., and Rieder, C. R. M. (2011). Identification of blood microRNAs associated to Parkinsonis disease. J. Biotechnol. 152, 96-101. doi: 10.1016/j.jbiotec.2011.01.023.
-
(2011)
J. Biotechnol
, vol.152
, pp. 96-101
-
-
Margis, R.1
Margis, R.2
Rieder, C.R.M.3
-
78
-
-
84918542774
-
PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs
-
Marsico, A., Huska, M. R., Lasserre, J., Hu, H., Vucicevic, D., Musahl, A., et al. (2013). PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. Genome Biol. 14:R84. doi: 10.1186/gb-2013-14-8-r84.
-
(2013)
Genome Biol
, vol.14
, pp. R84
-
-
Marsico, A.1
Huska, M.R.2
Lasserre, J.3
Hu, H.4
Vucicevic, D.5
Musahl, A.6
-
79
-
-
77958471215
-
A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing
-
Martí, E., Pantano, L., Bañez-Coronel, M., Llorens, F., Miñones-Moyano, E., Porta, S., et al. (2010). A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing. Nucleic Acids Res. 38, 7219-7235. doi: 10.1093/nar/gkq575.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7219-7235
-
-
Martí, E.1
Pantano, L.2
Bañez-Coronel, M.3
Llorens, F.4
Miñones-Moyano, E.5
Porta, S.6
-
80
-
-
84906828527
-
Influence of the confounding factors age and sex on microRNA profiles from peripheral blood
-
Meder, B., Backes, C., Haas, J., Leidinger, P., Stähler, C., Großmann, T., et al. (2014). Influence of the confounding factors age and sex on microRNA profiles from peripheral blood. Clin. Chem. 60, 1200-1208. doi: 10.1373/clinchem.2014.224238.
-
(2014)
Clin. Chem
, vol.60
, pp. 1200-1208
-
-
Meder, B.1
Backes, C.2
Haas, J.3
Leidinger, P.4
Stähler, C.5
Großmann, T.6
-
81
-
-
67349223927
-
Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
-
Mencía, A., Modamio-Høybjør, S., Redshaw, N., Morín, M., Mayo-Merino, F., Olavarrieta, L., et al. (2009). Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. Nat. Genet. 41, 609-613. doi: 10.1038/ng.355.
-
(2009)
Nat. Genet
, vol.41
, pp. 609-613
-
-
Mencía, A.1
Modamio-Høybjør, S.2
Redshaw, N.3
Morín, M.4
Mayo-Merino, F.5
Olavarrieta, L.6
-
82
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin, R. D., O'Connor, M. D., Griffith, M., Kuchenbauer, F., Delaney, A., Prabhu, A.-L., et al. (2008). Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 18, 610-621. doi: 10.1101/gr.7179508.
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.-L.6
-
83
-
-
84867736206
-
IsomiRs-the overlooked repertoire in the dynamic microRNAome
-
Neilsen, C. T., Goodall, G. J., and Bracken, C. P. (2012). IsomiRs-the overlooked repertoire in the dynamic microRNAome. Trends Genet. 28, 544-549. doi: 10.1016/j.tig.2012.07.005.
-
(2012)
Trends Genet
, vol.28
, pp. 544-549
-
-
Neilsen, C.T.1
Goodall, G.J.2
Bracken, C.P.3
-
84
-
-
84874541064
-
A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance
-
Ohanian, M., Humphreys, D. T., Anderson, E., Preiss, T., and Fatkin, D. (2013). A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance. BMC Genet. 14:18. doi: 10.1186/1471-2156-14-18.
-
(2013)
BMC Genet
, vol.14
, pp. 18
-
-
Ohanian, M.1
Humphreys, D.T.2
Anderson, E.3
Preiss, T.4
Fatkin, D.5
-
85
-
-
70849093653
-
A high-resolution structure of the pre-microRNA nuclear export machinery
-
Okada, C., Yamashita, E., Lee, S. J., Shibata, S., Katahira, J., Nakagawa, A., et al. (2009). A high-resolution structure of the pre-microRNA nuclear export machinery. Science 326, 1275-1279. doi: 10.1126/science.1178705.
-
(2009)
Science
, vol.326
, pp. 1275-1279
-
-
Okada, C.1
Yamashita, E.2
Lee, S.J.3
Shibata, S.4
Katahira, J.5
Nakagawa, A.6
-
86
-
-
79960185923
-
Dicer recognizes the 5' end of RNA for efficient and accurate processing
-
Park, J.-E., Heo, I., Tian, Y., Simanshu, D. K., Chang, H., Jee, D., et al. (2011). Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature 475, 201-205. doi: 10.1038/nature10198.
-
(2011)
Nature
, vol.475
, pp. 201-205
-
-
Park, J.-E.1
Heo, I.2
Tian, Y.3
Simanshu, D.K.4
Chang, H.5
Jee, D.6
-
87
-
-
0034597777
-
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
-
Pasquinelli, A. E., Reinhart, B. J., Slack, F., Martindale, M. Q., Kuroda, M. I., Maller, B., et al. (2000). Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408, 86-89. doi: 10.1038/35040556.
-
(2000)
Nature
, vol.408
, pp. 86-89
-
-
Pasquinelli, A.E.1
Reinhart, B.J.2
Slack, F.3
Martindale, M.Q.4
Kuroda, M.I.5
Maller, B.6
-
88
-
-
77951092180
-
Targeting of mRNAs by multiple miRNAs: the next step
-
Peter, M. E. (2010). Targeting of mRNAs by multiple miRNAs: the next step. Oncogene 29, 2161-2164. doi: 10.1038/onc.2010.59.
-
(2010)
Oncogene
, vol.29
, pp. 2161-2164
-
-
Peter, M.E.1
-
89
-
-
84859892863
-
MicroRNA profiling: approaches and considerations
-
Pritchard, C. C., Cheng, H. H., and Tewari, M. (2012). MicroRNA profiling: approaches and considerations. Nat. Rev. Genet. 13, 358-369. doi: 10.1038/nrg3198.
-
(2012)
Nat. Rev. Genet
, vol.13
, pp. 358-369
-
-
Pritchard, C.C.1
Cheng, H.H.2
Tewari, M.3
-
90
-
-
84890696135
-
Biogenesis of intronic miRNAs located in clusters by independent transcription and alternative splicing
-
Ramalingam, P., Palanichamy, J. K., Singh, A., Das, P., Bhagat, M., Kassab, M. A., et al. (2014). Biogenesis of intronic miRNAs located in clusters by independent transcription and alternative splicing. RNA 20, 76-87. doi: 10.1261/rna.041814.113.
-
(2014)
RNA
, vol.20
, pp. 76-87
-
-
Ramalingam, P.1
Palanichamy, J.K.2
Singh, A.3
Das, P.4
Bhagat, M.5
Kassab, M.A.6
-
91
-
-
36749026287
-
Genomic analysis of human microRNA transcripts
-
Saini, H. K., Griffiths-Jones, S., and Enright, A. J. (2007). Genomic analysis of human microRNA transcripts. Proc. Natl. Acad. Sci. U.S.A. 104, 17719-17724. doi: 10.1073/pnas.0703890104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 17719-17724
-
-
Saini, H.K.1
Griffiths-Jones, S.2
Enright, A.J.3
-
92
-
-
33847665108
-
Human polymorphism at microRNAs and microRNA target sites
-
Saunders, M. A., Liang, H., and Li, W.-H. (2007). Human polymorphism at microRNAs and microRNA target sites. Proc. Natl. Acad. Sci. U.S.A. 104, 3300-3305. doi: 10.1073/pnas.0611347104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 3300-3305
-
-
Saunders, M.A.1
Liang, H.2
Li, W.-H.3
-
93
-
-
80053384370
-
Genome-wide association study identifies five new schizophrenia loci
-
Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium. (2011). Genome-wide association study identifies five new schizophrenia loci. Nat. Genet. 43, 969-976. doi: 10.1038/ng.940.
-
(2011)
Nat. Genet
, vol.43
, pp. 969-976
-
-
-
94
-
-
79951539516
-
dPORE-miRNA: polymorphic regulation of microRNA genes
-
Schmeier, S., Schaefer, U., MacPherson, C. R., and Bajic, V. B. (2011). dPORE-miRNA: polymorphic regulation of microRNA genes. PLoS ONE 6:e16657. doi: 10.1371/journal.pone.0016657.
-
(2011)
PLoS ONE
, vol.6
-
-
Schmeier, S.1
Schaefer, U.2
MacPherson, C.R.3
Bajic, V.B.4
-
95
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz, D. S., Hutvágner, G., Du, T., Xu, Z., Aronin, N., and Zamore, P. D. (2003). Asymmetry in the assembly of the RNAi enzyme complex. Cell 115, 199-208. doi: 10.1016/S0092-8674(03)00759-1.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvágner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
96
-
-
65749093295
-
Micro-RNA abundance and stability in human brain: specific alterations in Alzheimer's disease temporal lobe neocortex
-
Sethi, P., and Lukiw, W. J. (2009). Micro-RNA abundance and stability in human brain: specific alterations in Alzheimer's disease temporal lobe neocortex. Neurosci. Lett. 459, 100-104. doi: 10.1016/j.neulet.2009.04.052.
-
(2009)
Neurosci. Lett
, vol.459
, pp. 100-104
-
-
Sethi, P.1
Lukiw, W.J.2
-
97
-
-
58749083044
-
Novel genetic variants in microRNA genes and familial breast cancer
-
Shen, J., Ambrosone, C. B., and Zhao, H. (2009). Novel genetic variants in microRNA genes and familial breast cancer. Int. J. Cancer 124, 1178-1182. doi: 10.1002/ijc.24008.
-
(2009)
Int. J. Cancer
, vol.124
, pp. 1178-1182
-
-
Shen, J.1
Ambrosone, C.B.2
Zhao, H.3
-
98
-
-
77951964981
-
Posttranscriptional regulation of microRNA biogenesis in animals
-
Siomi, H., and Siomi, M. C. (2010). Posttranscriptional regulation of microRNA biogenesis in animals. Mol. Cell 38, 323-332. doi: 10.1016/j.molcel.2010.03.013.
-
(2010)
Mol. Cell
, vol.38
, pp. 323-332
-
-
Siomi, H.1
Siomi, M.C.2
-
99
-
-
84856078759
-
A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing
-
Soldà, G., Robusto, M., Primignani, P., Castorina, P., Benzoni, E., Cesarani, A., et al. (2012). A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing. Hum. Mol. Genet. 21, 577-585. doi: 10.1093/hmg/ddr493.
-
(2012)
Hum. Mol. Genet
, vol.21
, pp. 577-585
-
-
Soldà, G.1
Robusto, M.2
Primignani, P.3
Castorina, P.4
Benzoni, E.5
Cesarani, A.6
-
101
-
-
84926139786
-
MIR137 variants identified in psychiatric patients affect synaptogenesis and neuronal transmission gene sets
-
Strazisar, M., Cammaerts, S., van der Ven, K., Forero, D. A., Lenaerts, A.-S., Nordin, A., et al. (2015). MIR137 variants identified in psychiatric patients affect synaptogenesis and neuronal transmission gene sets. Mol. Psychiatry. 20, 472-481. doi: 10.1038/mp.2014.53.
-
(2015)
Mol. Psychiatry
, vol.20
, pp. 472-481
-
-
Strazisar, M.1
Cammaerts, S.2
van der Ven, K.3
Forero, D.A.4
Lenaerts, A.-S.5
Nordin, A.6
-
102
-
-
69049108754
-
SNPs in human miRNA genes affect biogenesis and function
-
Sun, G., Yan, J., Noltner, K., Feng, J., Li, H., Sarkis, D. A., et al. (2009). SNPs in human miRNA genes affect biogenesis and function. RNA 15, 1640-1651. doi: 10.1261/rna.1560209.
-
(2009)
RNA
, vol.15
, pp. 1640-1651
-
-
Sun, G.1
Yan, J.2
Noltner, K.3
Feng, J.4
Li, H.5
Sarkis, D.A.6
-
103
-
-
84906283860
-
5' isomiR variation is of functional and evolutionary importance
-
Tan, G. C., Chan, E., Molnar, A., Sarkar, R., Alexieva, D., Isa, I. M., et al. (2014). 5' isomiR variation is of functional and evolutionary importance. Nucleic Acids Res. 42, 9424-9435. doi: 10.1093/nar/gku656.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 9424-9435
-
-
Tan, G.C.1
Chan, E.2
Molnar, A.3
Sarkar, R.4
Alexieva, D.5
Isa, I.M.6
-
104
-
-
67649277689
-
The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs
-
Trabucchi, M., Briata, P., Garcia-Mayoral, M., Haase, A. D., Filipowicz, W., Ramos, A., et al. (2009). The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature 459, 1010-1014. doi: 10.1038/nature08025.
-
(2009)
Nature
, vol.459
, pp. 1010-1014
-
-
Trabucchi, M.1
Briata, P.2
Garcia-Mayoral, M.3
Haase, A.D.4
Filipowicz, W.5
Ramos, A.6
-
105
-
-
27944508215
-
CLIP: a method for identifying protein-RNA interaction sites in living cells
-
Ule, J., Jensen, K., Mele, A., and Darnell, R. B. (2005). CLIP: a method for identifying protein-RNA interaction sites in living cells. Methods 37, 376-386. doi: 10.1016/j.ymeth.2005.07.018.
-
(2005)
Methods
, vol.37
, pp. 376-386
-
-
Ule, J.1
Jensen, K.2
Mele, A.3
Darnell, R.B.4
-
106
-
-
36749026906
-
Switching from repression to activation: microRNAs can up-regulate translation
-
Vasudevan, S., Tong, Y., and Steitz, J. A. (2007). Switching from repression to activation: microRNAs can up-regulate translation. Science 318, 1931-1934. doi: 10.1126/science.1149460.
-
(2007)
Science
, vol.318
, pp. 1931-1934
-
-
Vasudevan, S.1
Tong, Y.2
Steitz, J.A.3
-
107
-
-
17844363243
-
The contributions of dsRNA structure to Dicer specificity and efficiency
-
Vermeulen, A., Behlen, L., Reynolds, A., Wolfson, A., Marshall, W. S., Karpilow, J., et al. (2005). The contributions of dsRNA structure to Dicer specificity and efficiency. RNA 11, 674-682. doi: 10.1261/rna.7272305.
-
(2005)
RNA
, vol.11
, pp. 674-682
-
-
Vermeulen, A.1
Behlen, L.2
Reynolds, A.3
Wolfson, A.4
Marshall, W.S.5
Karpilow, J.6
-
108
-
-
84886096517
-
Online resources for miRNA analysis
-
Vlachos, I. S., and Hatzigeorgiou, A. G. (2013). Online resources for miRNA analysis. Clin. Biochem. 46, 879-900. doi: 10.1016/j.clinbiochem.2013.03.006.
-
(2013)
Clin. Biochem
, vol.46
, pp. 879-900
-
-
Vlachos, I.S.1
Hatzigeorgiou, A.G.2
-
109
-
-
84901696214
-
Argonaute proteins regulate microRNA stability: increased microRNA abundance by Argonaute proteins is due to microRNA stabilization
-
Winter, J., and Diederichs, S. (2011). Argonaute proteins regulate microRNA stability: increased microRNA abundance by Argonaute proteins is due to microRNA stabilization. RNA Biol 8, 1149-1157. doi: 10.4161/rna.8.6.17665.
-
(2011)
RNA Biol
, vol.8
, pp. 1149-1157
-
-
Winter, J.1
Diederichs, S.2
-
110
-
-
77951092028
-
Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3' untranslated region
-
Wu, S., Huang, S., Ding, J., Zhao, Y., Liang, L., Liu, T., et al. (2010). Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3' untranslated region. Oncogene 29, 2302-2308. doi: 10.1038/onc.2010.34.
-
(2010)
Oncogene
, vol.29
, pp. 2302-2308
-
-
Wu, S.1
Huang, S.2
Ding, J.3
Zhao, Y.4
Liang, L.5
Liu, T.6
-
111
-
-
33749984008
-
Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing
-
Yeom, K.-H., Lee, Y., Han, J., Suh, M. R., and Kim, V. N. (2006). Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing. Nucleic Acids Res. 34, 4622-4629. doi: 10.1093/nar/gkl458.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4622-4629
-
-
Yeom, K.-H.1
Lee, Y.2
Han, J.3
Suh, M.R.4
Kim, V.N.5
-
112
-
-
0347361541
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
-
Yi, R., Qin, Y., Macara, I. G., and Cullen, B. R. (2003). Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev. 17, 3011-3016. doi: 10.1101/gad.1158803.
-
(2003)
Genes Dev
, vol.17
, pp. 3011-3016
-
-
Yi, R.1
Qin, Y.2
Macara, I.G.3
Cullen, B.R.4
-
113
-
-
4444230672
-
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5
-
Zeng, Y., and Cullen, B. R. (2004). Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Nucleic Acids Res. 32, 4776-4785. doi: 10.1093/nar/gkh824.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4776-4785
-
-
Zeng, Y.1
Cullen, B.R.2
-
114
-
-
23044502585
-
Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences
-
Zeng, Y., and Cullen, B. R. (2005). Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences. J. Biol. Chem. 280, 27595-27603. doi: 10.1074/jbc.M504714200.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 27595-27603
-
-
Zeng, Y.1
Cullen, B.R.2
-
115
-
-
12544255565
-
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
-
Zeng, Y., Yi, R., and Cullen, B. R. (2005). Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha. EMBO J. 24, 138-148. doi: 10.1038/sj.emboj.7600491.
-
(2005)
EMBO J
, vol.24
, pp. 138-148
-
-
Zeng, Y.1
Yi, R.2
Cullen, B.R.3
-
116
-
-
84927171302
-
Genetic variants of microRNA sequences and susceptibility to sepsis in patients with major blunt trauma
-
Zhang, A.-Q., Gu, W., Zeng, L., Zhang, L.-Y., Du, D.-Y., Zhang, M., et al. (2015). Genetic variants of microRNA sequences and susceptibility to sepsis in patients with major blunt trauma. Ann. Surg. 261, 189-196. doi: 10.1097/SLA.0000000000000687.
-
(2015)
Ann. Surg
, vol.261
, pp. 189-196
-
-
Zhang, A.-Q.1
Gu, W.2
Zeng, L.3
Zhang, L.-Y.4
Du, D.-Y.5
Zhang, M.6
-
117
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang, H., Kolb, F. A., Brondani, V., Billy, E., and Filipowicz, W. (2002). Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J. 21, 5875-5885. doi: 10.1093/emboj/cdf582.
-
(2002)
EMBO J
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
118
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang, H., Kolb, F. A., Jaskiewicz, L., Westhof, E., and Filipowicz, W. (2004). Single processing center models for human Dicer and bacterial RNase III. Cell 118, 57-68. doi: 10.1016/j.cell.2004.06.017.
-
(2004)
Cell
, vol.118
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.A.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
-
119
-
-
78649870594
-
The terminal loop region controls microRNA processing by Drosha and Dicer
-
Zhang, X., and Zeng, Y. (2010). The terminal loop region controls microRNA processing by Drosha and Dicer. Nucleic Acids Res. 38, 7689-7697. doi: 10.1093/nar/gkq645.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7689-7697
-
-
Zhang, X.1
Zeng, Y.2
-
120
-
-
84940119734
-
Genetic variability of microRNA genes in 15 animal species
-
Zorc, M., Obsteter, J., Dovc, P., and Kunej, T. (2015). Genetic variability of microRNA genes in 15 animal species. J. Genomics 3, 51-56. doi: 10.7150/jgen.11246.
-
(2015)
J. Genomics
, vol.3
, pp. 51-56
-
-
Zorc, M.1
Obsteter, J.2
Dovc, P.3
Kunej, T.4
-
121
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415. doi: 10.1093/nar/gkg595.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|