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Volumn 42, Issue D1, 2014, Pages

PolymiRTS Database 3.0: Linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; 3' UNTRANSLATED REGION;

EID: 84891770518     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt1028     Document Type: Article
Times cited : (274)

References (49)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros, V. (2004) The functions of animal microRNAs. Nature, 431, 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • Saunders, M.A., Liang, H. and Li, W.-H. (2007) Human polymorphism at microRNAs and microRNA target sites. Proc. Natl Acad. Sci. USA, 104, 3300-3305.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.-H.3
  • 4
    • 52949119537 scopus 로고    scopus 로고
    • MicroRNA target site polymorphisms and human disease
    • Sethupathy, P. and Collins, F.S. (2008) MicroRNA target site polymorphisms and human disease. Trends Genet., 24, 489-497.
    • (2008) Trends Genet. , vol.24 , pp. 489-497
    • Sethupathy, P.1    Collins, F.S.2
  • 5
    • 77952918274 scopus 로고    scopus 로고
    • Genetic variation in microRNA networks: The implications for cancer research
    • Ryan, B.M., Robles, A.I. and Harris, C.C. (2010) Genetic variation in microRNA networks: the implications for cancer research. Nat. Rev. Cancer, 10, 389-402.
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 389-402
    • Ryan, B.M.1    Robles, A.I.2    Harris, C.C.3
  • 6
    • 84862114807 scopus 로고    scopus 로고
    • Genetic architecture of microRNA expression: Implications for the transcriptome and complex traits
    • Gamazon, E.R., Ziliak, D., Im, H.K., Lacroix, B., Park, D.S., Cox, N.J. and Huang, R.S. (2012) Genetic architecture of microRNA expression: implications for the transcriptome and complex traits. Am. J. Hum. Genet., 90, 1046-1063.
    • (2012) Am. J. Hum. Genet. , vol.90 , pp. 1046-1063
    • Gamazon, E.R.1    Ziliak, D.2    Im, H.K.3    Lacroix, B.4    Park, D.S.5    Cox, N.J.6    Huang, R.S.7
  • 7
    • 84863555312 scopus 로고    scopus 로고
    • Impact of microRNA regulation on variation in human gene expression
    • Lu, J. and Clark, A.G. (2012) Impact of microRNA regulation on variation in human gene expression. Genome Res., 22, 1243-1254.
    • (2012) Genome Res. , vol.22 , pp. 1243-1254
    • Lu, J.1    Clark, A.G.2
  • 8
    • 84858379476 scopus 로고    scopus 로고
    • MicroRNAs in stress signaling and human disease
    • Mendell, J.T. and Olson, E.N. (2012) MicroRNAs in stress signaling and human disease. Cell, 148, 1172-1187.
    • (2012) Cell , vol.148 , pp. 1172-1187
    • Mendell, J.T.1    Olson, E.N.2
  • 9
    • 84872845828 scopus 로고    scopus 로고
    • MiRNA regulatory variation in human evolution
    • Li, J. and Zhang, Z. (2013) miRNA regulatory variation in human evolution. Trends Genet., 29, 116-124.
    • (2013) Trends Genet. , vol.29 , pp. 116-124
    • Li, J.1    Zhang, Z.2
  • 10
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs-microRNAs with a role in cancer
    • Esquela-Kerscher, A. and Slack, F.J. (2006) Oncomirs-microRNAs with a role in cancer. Nat. Rev. Cancer, 6, 259-269.
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 12
    • 84869087925 scopus 로고    scopus 로고
    • Identification of fifteen novel germline variants in the BRCA1 3′UTR reveals a variant in a breast cancer case that introduces a functional miR-103 target site
    • Brewster, B.L., Rossiello, F., French, J.D., Edwards, S.L., Wong, M., Wronski, A., Whiley, P., Waddell, N., Chen, X., Bove, B. et al. (2012) Identification of fifteen novel germline variants in the BRCA1 3′UTR reveals a variant in a breast cancer case that introduces a functional miR-103 target site. Hum. Mutat., 33, 1665-1675.
    • (2012) Hum. Mutat. , vol.33 , pp. 1665-1675
    • Brewster, B.L.1    Rossiello, F.2    French, J.D.3    Edwards, S.L.4    Wong, M.5    Wronski, A.6    Whiley, P.7    Waddell, N.8    Chen, X.9    Bove, B.10
  • 13
    • 79957742863 scopus 로고    scopus 로고
    • Polymorphism of the pre-miR-146a is associated with risk of cervical cancer in a Chinese population
    • Yue, C., Wang, M., Ding, B., Wang, W., Fu, S., Zhou, D., Zhang, Z. and Han, S. (2011) Polymorphism of the pre-miR-146a is associated with risk of cervical cancer in a Chinese population. Gynecol. Oncol., 122, 33-37.
    • (2011) Gynecol. Oncol. , vol.122 , pp. 33-37
    • Yue, C.1    Wang, M.2    Ding, B.3    Wang, W.4    Fu, S.5    Zhou, D.6    Zhang, Z.7    Han, S.8
  • 14
    • 84875462661 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms inside microRNA target sites influence the susceptibility to type 2 diabetes
    • Zhao, X., Ye, Q., Xu, K., Cheng, J., Gao, Y., Li, Q., Du, J., Shi, H. and Zhou, L. (2013) Single-nucleotide polymorphisms inside microRNA target sites influence the susceptibility to type 2 diabetes. J. Hum. Genet., 58, 135-141.
    • (2013) J. Hum. Genet. , vol.58 , pp. 135-141
    • Zhao, X.1    Ye, Q.2    Xu, K.3    Cheng, J.4    Gao, Y.5    Li, Q.6    Du, J.7    Shi, H.8    Zhou, L.9
  • 15
    • 40749145370 scopus 로고    scopus 로고
    • Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein
    • Wang, G., van der Walt, J.M., Mayhew, G., Li, Y.J., Zuchner, S., Scott, W.K., Martin, E.R. and Vance, J.M. (2008) Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. Am. J. Hum. Genet., 82, 283-289.
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 283-289
    • Wang, G.1    Van Der Walt, J.M.2    Mayhew, G.3    Li, Y.J.4    Zuchner, S.5    Scott, W.K.6    Martin, E.R.7    Vance, J.M.8
  • 17
    • 73949086088 scopus 로고    scopus 로고
    • An insertion/deletion polymorphism at miRNA-122-binding site in the interleukin-1alpha 3′ untranslated region confers risk for hepatocellular carcinoma
    • Gao, Y., He, Y., Ding, J., Wu, K., Hu, B., Liu, Y., Wu, Y., Guo, B., Shen, Y., Landi, D. et al. (2009) An insertion/deletion polymorphism at miRNA-122-binding site in the interleukin-1alpha 3′ untranslated region confers risk for hepatocellular carcinoma. Carcinogenesis, 30, 2064-2069.
    • (2009) Carcinogenesis , vol.30 , pp. 2064-2069
    • Gao, Y.1    He, Y.2    Ding, J.3    Wu, K.4    Hu, B.5    Liu, Y.6    Wu, Y.7    Guo, B.8    Shen, Y.9    Landi, D.10
  • 18
    • 47749103305 scopus 로고    scopus 로고
    • Allele-specific targeting of hsa-miR-657 to human IGF2R creates a potential mechanism underlying the association of ACAA-insertion/deletion polymorphism with type 2 diabetes
    • Lv, K., Guo, Y., Zhang, Y., Wang, K., Jia, Y. and Sun, S. (2008) Allele-specific targeting of hsa-miR-657 to human IGF2R creates a potential mechanism underlying the association of ACAA-insertion/deletion polymorphism with type 2 diabetes. Biochem. Biophys. Res. Commun., 374, 101-105.
    • (2008) Biochem. Biophys. Res. Commun. , vol.374 , pp. 101-105
    • Lv, K.1    Guo, Y.2    Zhang, Y.3    Wang, K.4    Jia, Y.5    Sun, S.6
  • 19
    • 33846118697 scopus 로고    scopus 로고
    • PolymiRTS Database: Linking polymorphisms in microRNA target sites with complex traits
    • Bao, L., Zhou, M., Wu, L., Lu, L., Goldowitz, D., Williams, R.W. and Cui, Y. (2007) PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits. Nucleic Acids Res., 35, D51-D54.
    • (2007) Nucleic Acids Res. , vol.35
    • Bao, L.1    Zhou, M.2    Wu, L.3    Lu, L.4    Goldowitz, D.5    Williams, R.W.6    Cui, Y.7
  • 20
    • 84862162057 scopus 로고    scopus 로고
    • PolymiRTS Database 2.0: Linking polymorphisms in microRNA target sites with human diseases and complex traits
    • Ziebarth, J.D., Bhattacharya, A., Chen, A. and Cui, Y. (2012) PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res., 40, D216-D221.
    • (2012) Nucleic Acids Res. , vol.40
    • Ziebarth, J.D.1    Bhattacharya, A.2    Chen, A.3    Cui, Y.4
  • 22
    • 79952155291 scopus 로고    scopus 로고
    • Involvement of miR-30c and miR-301a in immediate induction of plasminogen activator inhibitor-1 by placental growth factor in human pulmonary endothelial cells
    • Patel, N., Tahara, S.M., Malik, P. and Kalra, V.K. (2011) Involvement of miR-30c and miR-301a in immediate induction of plasminogen activator inhibitor-1 by placental growth factor in human pulmonary endothelial cells. Biochem. J., 434, 473-482.
    • (2011) Biochem. J. , vol.434 , pp. 473-482
    • Patel, N.1    Tahara, S.M.2    Malik, P.3    Kalra, V.K.4
  • 23
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • Chi, S.W., Zang, J.B., Mele, A. and Darnell, R.B. (2009) Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature, 460, 479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 25
    • 79959946169 scopus 로고    scopus 로고
    • Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
    • Kudla, G., Granneman, S., Hahn, D., Beggs, J.D. and Tollervey, D. (2011) Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc. Natl Acad. Sci. USA, 108, 10010-10015.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 10010-10015
    • Kudla, G.1    Granneman, S.2    Hahn, D.3    Beggs, J.D.4    Tollervey, D.5
  • 26
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak, A., Kudla, G., Dudnakova, T. and Tollervey, D. (2013) Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell, 153, 654-665.
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 29
    • 84876581271 scopus 로고    scopus 로고
    • Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection
    • Leushkin, E.V., Bazykin, G.A. and Kondrashov, A.S. (2013) Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection. Genome Biol. Evol., 5, 514-524.
    • (2013) Genome Biol. Evol. , vol.5 , pp. 514-524
    • Leushkin, E.V.1    Bazykin, G.A.2    Kondrashov, A.S.3
  • 30
    • 84866648693 scopus 로고    scopus 로고
    • Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome
    • Bhattacharya, A., Ziebarth, J.D. and Cui, Y. (2012) Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PLoS One, 7, e46176.
    • (2012) PLoS One , vol.7
    • Bhattacharya, A.1    Ziebarth, J.D.2    Cui, Y.3
  • 31
    • 80455154984 scopus 로고    scopus 로고
    • Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
    • Garcia, D.M., Baek, D., Shin, C., Bell, G.W., Grimson, A. and Bartel, D.P. (2011) Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nat. Struct. Mol. Biol., 18, 1139-1146.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1139-1146
    • Garcia, D.M.1    Baek, D.2    Shin, C.3    Bell, G.W.4    Grimson, A.5    Bartel, D.P.6
  • 32
    • 34547727263 scopus 로고    scopus 로고
    • Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3′ untranslated region: A mechanism for functional single-nucleotide polymorphisms related to phenotypes
    • Sethupathy, P., Borel, C., Gagnebin, M., Grant, G.R., Deutsch, S., Elton, T.S., Hatzigeorgiou, A.G. and Antonarakis, S.E. (2007) Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3′ untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes. Am. J. Hum. Genet., 81, 405-413.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 405-413
    • Sethupathy, P.1    Borel, C.2    Gagnebin, M.3    Grant, G.R.4    Deutsch, S.5    Elton, T.S.6    Hatzigeorgiou, A.G.7    Antonarakis, S.E.8
  • 33
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 35
    • 58149186499 scopus 로고    scopus 로고
    • MiRecords: An integrated resource for microRNA-target interactions
    • Xiao, F., Zuo, Z., Cai, G., Kang, S., Gao, X. and Li, T. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res., 37, D105-D110.
    • (2009) Nucleic Acids Res. , vol.37
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5    Li, T.6
  • 38
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara, A. and Griffiths-Jones, S. (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res., 39, D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 42
    • 84875778506 scopus 로고    scopus 로고
    • Regulation of miRNA biogenesis and turnover in the immune system
    • Bronevetsky, Y. and Ansel, K.M. (2013) Regulation of miRNA biogenesis and turnover in the immune system. Immunol. Rev., 253, 304-316.
    • (2013) Immunol. Rev. , vol.253 , pp. 304-316
    • Bronevetsky, Y.1    Ansel, K.M.2
  • 43
    • 0242290115 scopus 로고    scopus 로고
    • WebQTL: Web-based complex trait analysis
    • Wang, J., Williams, R.W. and Manly, K.F. (2003) WebQTL: web-based complex trait analysis. Neuroinformatics, 1, 299-308.
    • (2003) Neuroinformatics , vol.1 , pp. 299-308
    • Wang, J.1    Williams, R.W.2    Manly, K.F.3
  • 44
    • 84875362088 scopus 로고    scopus 로고
    • SomamiR: A database for somatic mutations impacting microRNA function in cancer
    • Bhattacharya, A., Ziebarth, J.D. and Cui, Y. (2013) SomamiR: a database for somatic mutations impacting microRNA function in cancer. Nucleic Acids Res., 41, D977-D982.
    • (2013) Nucleic Acids Res. , vol.41
    • Bhattacharya, A.1    Ziebarth, J.D.2    Cui, Y.3
  • 45
    • 84867612772 scopus 로고    scopus 로고
    • Integrative analysis of somatic mutations altering MicroRNA targeting in cancer genomes
    • Ziebarth, J.D., Bhattacharya, A. and Cui, Y. (2012) Integrative analysis of somatic mutations altering MicroRNA targeting in cancer genomes. PLoS One, 7, e47137.
    • (2012) PLoS One , vol.7
    • Ziebarth, J.D.1    Bhattacharya, A.2    Cui, Y.3
  • 46
    • 84880512934 scopus 로고    scopus 로고
    • Prioritization of genetic variants in the microRNA regulome as functional candidates in genome-wide association studies
    • Bulik-Sullivan, B., Selitsky, S. and Sethupathy, P. (2013) Prioritization of genetic variants in the microRNA regulome as functional candidates in genome-wide association studies. Hum. Mutat., 34, 1049-1056.
    • (2013) Hum. Mutat. , vol.34 , pp. 1049-1056
    • Bulik-Sullivan, B.1    Selitsky, S.2    Sethupathy, P.3
  • 47
    • 84876810952 scopus 로고    scopus 로고
    • Thematic Review Series: Functional Regulation of Lipid Homeostasis by microRNA: Needles in the genetic haystack of lipid disorders: Single nucleotide polymorphisms in the microRNA regulome
    • Sethupathy, P. (2013) Thematic Review Series: Functional Regulation of Lipid Homeostasis by microRNA: Needles in the genetic haystack of lipid disorders: Single nucleotide polymorphisms in the microRNA regulome. J. Lipid Res., 54, 1168-1173.
    • (2013) J. Lipid Res. , vol.54 , pp. 1168-1173
    • Sethupathy, P.1
  • 48
    • 77953528169 scopus 로고    scopus 로고
    • A novel mutation in the miR-128b gene reduces miRNA processing and leads to glucocorticoid resistance of MLL-AF4 acute lymphocytic leukemia cells
    • Kotani, A., Ha, D., Schotte, D., den Boer, M.L., Armstrong, S.A. and Lodish, H.F. (2010) A novel mutation in the miR-128b gene reduces miRNA processing and leads to glucocorticoid resistance of MLL-AF4 acute lymphocytic leukemia cells. Cell Cycle, 9, 1037-1042.
    • (2010) Cell Cycle , vol.9 , pp. 1037-1042
    • Kotani, A.1    Ha, D.2    Schotte, D.3    Den Boer, M.L.4    Armstrong, S.A.5    Lodish, H.F.6
  • 49
    • 79958085654 scopus 로고    scopus 로고
    • Discovery of common SNPs in the miR-205/200 family-regulated epithelial to mesenchymal transition pathway and their association with risk for non-small cell lung cancer
    • Leng, S., Bernauer, A.M., Zhai, R., Tellez, C.S., Su, L., Burki, E.A., Picchi, M.A., Stidley, C.A., Crowell, R.E., Christiani, D.C. et al. (2011) Discovery of common SNPs in the miR-205/200 family-regulated epithelial to mesenchymal transition pathway and their association with risk for non-small cell lung cancer. Int. J. Mol. Epidemiol. Genet., 2, 145-155.
    • (2011) Int. J. Mol. Epidemiol. Genet. , vol.2 , pp. 145-155
    • Leng, S.1    Bernauer, A.M.2    Zhai, R.3    Tellez, C.S.4    Su, L.5    Burki, E.A.6    Picchi, M.A.7    Stidley, C.A.8    Crowell, R.E.9    Christiani, D.C.10


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