-
1
-
-
84937681813
-
The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales
-
Yaari G, Benichou JIC, Vander Heiden JA, Kleinstein SH, Louzoun Y. 2015 The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales. Phil. Trans. R. Soc. B 370, 20140242. (doi:10.1098/ rstb.2014.0242)
-
Phil. Trans. R. Soc. B
, vol.370
-
-
Yaari, G.1
Benichou, J.I.C.2
Vander Heiden, J.A.3
Kleinstein, S.H.4
Louzoun, Y.5
-
2
-
-
0021933994
-
Regulated progression of a cultured pre-B-cell line to the B-cell stage
-
Reth MG, Ammirati P, Jackson S, Alt FW. 1985 Regulated progression of a cultured pre-B-cell line to the B-cell stage. Nature 317, 353-355. (doi:10. 1038/317353a0)
-
(1985)
Nature
, vol.317
, pp. 353-355
-
-
Reth, M.G.1
Ammirati, P.2
Jackson, S.3
Alt, F.W.4
-
3
-
-
22944441630
-
Genes, pathways and checkpoints in lymphocyte development and homeostasis
-
Miosge LA, Goodnow CC. 2005 Genes, pathways and checkpoints in lymphocyte development and homeostasis. Immunol. Cell Biol. 83, 318-335. (doi:10.1111/j.1440-1711.2005.01353.x)
-
(2005)
Immunol. Cell Biol
, vol.83
, pp. 318-335
-
-
Miosge, L.A.1
Goodnow, C.C.2
-
4
-
-
0025868702
-
Resolution and characterization of pro-B and pre-pro-B cell stages in normal mouse bone marrow
-
Hardy RR, Carmack CE, Shinton SA, Kemp JD, Hayakawa K. 1991 Resolution and characterization of pro-B and pre-pro-B cell stages in normal mouse bone marrow. J. Exp. Med. 173, 1213-1225. (doi:10.1084/jem.173.5.1213)
-
(1991)
J. Exp. Med
, vol.173
, pp. 1213-1225
-
-
Hardy, R.R.1
Carmack, C.E.2
Shinton, S.A.3
Kemp, J.D.4
Hayakawa, K.5
-
5
-
-
0030765923
-
Changes in the V(H) gene repertoire of developing precursor B lymphocytes in mouse bone marrow mediated by the pre-B cell receptor
-
ten Boekel E, Melchers F, Rolink AG. 1997 Changes in the V(H) gene repertoire of developing precursor B lymphocytes in mouse bone marrow mediated by the pre-B cell receptor. Immunity 7, 357-368. (doi:10.1016/S1074-7613(00)80357-X)
-
(1997)
Immunity
, vol.7
, pp. 357-368
-
-
ten Boekel, E.1
Melchers, F.2
Rolink, A.G.3
-
6
-
-
80051939065
-
Selection of individual VH genes occurs at the pro-B to pre-B cell transition
-
Meng W et al. 2011 Selection of individual VH genes occurs at the pro-B to pre-B cell transition. J. Immunol. 187, 1835-1844. (doi:10.4049/ jimmunol.1100207)
-
(2011)
J. Immunol
, vol.187
, pp. 1835-1844
-
-
Meng, W.1
-
7
-
-
0035056376
-
B cell development pathways
-
Hardy RR, Hayakawa K. 2001 B cell development pathways. Annu. Rev. Immunol. 19, 595-621. (doi:10.1146/annurev.immunol.19.1.595)
-
(2001)
Annu. Rev. Immunol
, vol.19
, pp. 595-621
-
-
Hardy, R.R.1
Hayakawa, K.2
-
8
-
-
0027275497
-
The regulated expression of B lineage associated genes during B cell differentiation in bone marrow and fetal liver
-
Li YS, Hayakawa K, Hardy RR. 1993 The regulated expression of B lineage associated genes during B cell differentiation in bone marrow and fetal liver. J. Exp. Med. 178, 951-960. (doi:10.1084/jem.178. 3.951)
-
(1993)
J. Exp. Med
, vol.178
, pp. 951-960
-
-
Li, Y.S.1
Hayakawa, K.2
Hardy, R.R.3
-
9
-
-
0035892228
-
Resolution of three nonproliferative immature splenic B cell subsets reveals multiple selection points during peripheral B cell maturation
-
Allman D, Lindsley RC, DeMuth W, Rudd K, Shinton SA, Hardy RR. 2001 Resolution of three nonproliferative immature splenic B cell subsets reveals multiple selection points during peripheral B cell maturation. J. Immunol. 167, 6834-6840. (doi:10.4049/jimmunol.167.12.6834)
-
(2001)
J. Immunol
, vol.167
, pp. 6834-6840
-
-
Allman, D.1
Lindsley, R.C.2
DeMuth, W.3
Rudd, K.4
Shinton, S.A.5
Hardy, R.R.6
-
10
-
-
0029003671
-
Transitional B cells are the target of negative selection in the B cell compartment
-
Carsetti R, Kohler G, Lamers MC. 1995 Transitional B cells are the target of negative selection in the B cell compartment. J. Exp. Med. 181, 2129-2140. (doi:10.1084/jem.181.6.2129)
-
(1995)
J. Exp. Med
, vol.181
, pp. 2129-2140
-
-
Carsetti, R.1
Kohler, G.2
Lamers, M.C.3
-
11
-
-
0034646356
-
A B-cell receptor-specific selection step governs immature to mature B cell differentiation
-
Levine MH, Haberman AM, Sant'Angelo DB, Hannum LG, Cancro MP, Janeway Jr CA, Shlomchik MJ. 2000 A B-cell receptor-specific selection step governs immature to mature B cell differentiation. Proc. Natl Acad. Sci. USA 97, 2743-2748. (doi:10. 1073/pnas.050552997)
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 2743-2748
-
-
Levine, M.H.1
Haberman, A.M.2
Sant'Angelo, D.B.3
Hannum, L.G.4
Cancro, M.P.5
Janeway Jr, C.A.6
Shlomchik, M.J.7
-
12
-
-
0026060620
-
Intraclonal generation of antibody mutants in germinal centres
-
Jacob J, Kelsoe G, Rajewsky K, Weiss U. 1991 Intraclonal generation of antibody mutants in germinal centres. Nature 354, 389-392. (doi:10. 1038/354389a0)
-
(1991)
Nature
, vol.354
, pp. 389-392
-
-
Jacob, J.1
Kelsoe, G.2
Rajewsky, K.3
Weiss, U.4
-
13
-
-
84903646784
-
CD80 and PD-L2 define functionally distinct memory B cell subsets that are independent of antibody isotype
-
Zuccarino-Catania GV, Sadanand S, Weisel FJ, Tomayko MM, Meng H, Kleinstein SH, Good- Jacobson KL, Shlomchik MJ. 2014 CD80 and PD-L2 define functionally distinct memory B cell subsets that are independent of antibody isotype. Nat. Immunol. 15, 631-637. (doi:10.1038/ ni.2914)
-
(2014)
Nat. Immunol
, vol.15
, pp. 631-637
-
-
Zuccarino-Catania, G.V.1
Sadanand, S.2
Weisel, F.J.3
Tomayko, M.M.4
Meng, H.5
Kleinstein, S.H.6
Good-Jacobson, K.L.7
Shlomchik, M.J.8
-
14
-
-
84922619699
-
Class-switched memory B cells remodel BCRs within secondary germinal centers
-
McHeyzer-Williams LJ, Milpied PJ, Okitsu SL, McHeyzer-Williams MG. 2015 Class-switched memory B cells remodel BCRs within secondary germinal centers. Nat. Immunol. 16, 296-305. (doi:10.1038/ni.3095)
-
(2015)
Nat. Immunol
, vol.16
, pp. 296-305
-
-
McHeyzer-Williams, L.J.1
Milpied, P.J.2
Okitsu, S.L.3
McHeyzer-Williams, M.G.4
-
15
-
-
84859717525
-
Germinal center selection and the development of memory B and plasma cells
-
Shlomchik MJ, Weisel F. 2012 Germinal center selection and the development of memory B and plasma cells. Immunol. Rev. 247, 52-63. (doi:10. 1111/j.1600-065X.2012.01124.x)
-
(2012)
Immunol. Rev
, vol.247
, pp. 52-63
-
-
Shlomchik, M.J.1
Weisel, F.2
-
16
-
-
0021129784
-
The immunoglobulin heavy chain variable region (Igh-V) locus in the mouse. I. One hundred Igh-V genes comprise seven families of homologous genes
-
Brodeur PH, Riblet R. 1984 The immunoglobulin heavy chain variable region (Igh-V) locus in the mouse. I. One hundred Igh-V genes comprise seven families of homologous genes. Eur. J. Immunol. 14, 922-930. (doi:10.1002/eji.1830141012)
-
(1984)
Eur. J. Immunol
, vol.14
, pp. 922-930
-
-
Brodeur, P.H.1
Riblet, R.2
-
17
-
-
0019494043
-
Aberrant rearrangements contribute significantly to the allelic exclusion of immunoglobulin gene expression
-
Coleclough C, Perry RP, Karjalainen K, Weigert M. 1981 Aberrant rearrangements contribute significantly to the allelic exclusion of immunoglobulin gene expression. Nature 290, 372-378. (doi:10.1038/290372a0)
-
(1981)
Nature
, vol.290
, pp. 372-378
-
-
Coleclough, C.1
Perry, R.P.2
Karjalainen, K.3
Weigert, M.4
-
18
-
-
84861222628
-
B cell receptor light chain repertoires show signs of selection with differences between groups of healthy individuals and SLE patients
-
Schoettler N, Ni D, Weigert M. 2012 B cell receptor light chain repertoires show signs of selection with differences between groups of healthy individuals and SLE patients. Mol. Immunol. 51, 273-282. (doi:10.1016/j.molimm.2012.03.028)
-
(2012)
Mol. Immunol
, vol.51
, pp. 273-282
-
-
Schoettler, N.1
Ni, D.2
Weigert, M.3
-
19
-
-
84901253129
-
Proteomic identification of monoclonal antibodies from serum
-
Boutz DR, Horton AP, Wine Y, Lavinder JJ, Georgiou G, Marcotte EM. 2014 Proteomic identification of monoclonal antibodies from serum. Anal. Chem. 86, 4758-4766. (doi:10.1021/ac4037679)
-
(2014)
Anal. Chem
, vol.86
, pp. 4758-4766
-
-
Boutz, D.R.1
Horton, A.P.2
Wine, Y.3
Lavinder, J.J.4
Georgiou, G.5
Marcotte, E.M.6
-
20
-
-
0016756272
-
Continuous cultures of fused cells secreting antibody of predefined specificity
-
Kohler G, Milstein C. 1975 Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 256, 495-497. (doi:10.1038/ 256495a0)
-
(1975)
Nature
, vol.256
, pp. 495-497
-
-
Kohler, G.1
Milstein, C.2
-
21
-
-
0025116629
-
A test for clonal relatedness in a set of lymphocytes
-
Litwin S, Shlomchik M. 1990 A test for clonal relatedness in a set of lymphocytes. J. Exp. Med. 171, 293-297. (doi:10.1084/jem. 171.1.293)
-
(1990)
J. Exp. Med
, vol.171
, pp. 293-297
-
-
Litwin, S.1
Shlomchik, M.2
-
22
-
-
0027309585
-
Comparative in vitro analysis of proliferation, Ig secretion, and Ig class switching by murine marginal zone and follicular B cells
-
Snapper CM, Yamada H, Smoot D, Sneed R, Lees A, Mond JJ. 1993 Comparative in vitro analysis of proliferation, Ig secretion, and Ig class switching by murine marginal zone and follicular B cells. J. Immunol. 150, 2737-2745.
-
(1993)
J. Immunol
, vol.150
, pp. 2737-2745
-
-
Snapper, C.M.1
Yamada, H.2
Smoot, D.3
Sneed, R.4
Lees, A.5
Mond, J.J.6
-
23
-
-
0023462643
-
Structure and function of anti-DNA autoantibodies derived from a single autoimmune mouse
-
Shlomchik MJ, Aucoin AH, Pisetsky DS, Weigert MG. 1987 Structure and function of anti-DNA autoantibodies derived from a single autoimmune mouse. Proc. Natl Acad. Sci. USA 84, 9150-9154. (doi:10.1073/pnas.84.24.9150)
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 9150-9154
-
-
Shlomchik, M.J.1
Aucoin, A.H.2
Pisetsky, D.S.3
Weigert, M.G.4
-
24
-
-
0008476550
-
Generation of antibody diversity in the immune response of BALB/c mice to influenza virus hemagglutinin
-
McKean D, Huppi K, Bell M, Staudt L, Gerhard W, Weigert M. 1984 Generation of antibody diversity in the immune response of BALB/c mice to influenza virus hemagglutinin. Proc. Natl Acad. Sci. USA 81, 3180-3184. (doi:10.1073/pnas.81.10.3180)
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.81
, pp. 3180-3184
-
-
McKean, D.1
Huppi, K.2
Bell, M.3
Staudt, L.4
Gerhard, W.5
Weigert, M.6
-
25
-
-
0018179467
-
Analysis of the repertoire of anti-NP antibodies in C57BL/6 mice by cell fusion. I. Characterization of antibody families in the primary and hyperimmune response
-
Reth M, Hammerling GJ, Rajewsky K. 1978 Analysis of the repertoire of anti-NP antibodies in C57BL/6 mice by cell fusion. I. Characterization of antibody families in the primary and hyperimmune response. Eur. J. Immunol. 8, 393-400. (doi:10.1002/eji. 1830080605)
-
(1978)
Eur. J. Immunol
, vol.8
, pp. 393-400
-
-
Reth, M.1
Hammerling, G.J.2
Rajewsky, K.3
-
26
-
-
0025838698
-
A large array of human monoclonal antibodies to type 1 human immunodeficiency virus from combinatorial libraries of asymptomatic seropositive individuals
-
Burton DR, Barbas 3rd CF, Persson MA, Koenig S, Chanock RM, Lerner RA. 1991 A large array of human monoclonal antibodies to type 1 human immunodeficiency virus from combinatorial libraries of asymptomatic seropositive individuals. Proc. Natl Acad. Sci. USA 88, 10 134-10 137. (doi:10.1073/ pnas.88.22.10134)
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 10 134-10 137
-
-
Burton, D.R.1
Barbas, C.F.2
Persson, M.A.3
Koenig, S.4
Chanock, R.M.5
Lerner, R.A.6
-
27
-
-
78651488739
-
Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection
-
Wrammert J et al. 2011 Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection. J. Exp. Med. 208, 181-193. (doi:10.1084/ jem.20101352)
-
(2011)
J. Exp. Med
, vol.208
, pp. 181-193
-
-
Wrammert, J.1
-
28
-
-
36849031722
-
Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning
-
Tiller T, Meffre E, Yurasov S, Tsuiji M, Nussenzweig MC, Wardemann H. 2008 Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning. J. Immunol. Methods 329, 112-124. (doi:10.1016/j. jim.2007.09.017)
-
(2008)
J. Immunol. Methods
, vol.329
, pp. 112-124
-
-
Tiller, T.1
Meffre, E.2
Yurasov, S.3
Tsuiji, M.4
Nussenzweig, M.C.5
Wardemann, H.6
-
29
-
-
84893623221
-
Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes
-
Busse CE, Czogiel I, Braun P, Arndt PF, Wardemann H. 2014 Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes. Eur. J. Immunol. 44, 597-603. (doi:10.1002/eji.201343917)
-
(2014)
Eur. J. Immunol
, vol.44
, pp. 597-603
-
-
Busse, C.E.1
Czogiel, I.2
Braun, P.3
Arndt, P.F.4
Wardemann, H.5
-
30
-
-
84893831480
-
The promise and challenge of high-throughput sequencing of the antibody repertoire
-
Georgiou G, Ippolito GC, Beausang J, Busse CE, Wardemann H, Quake SR. 2014 The promise and challenge of high-throughput sequencing of the antibody repertoire. Nat. Biotechnol. 32, 158-168. (doi:10.1038/nbt.2782)
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 158-168
-
-
Georgiou, G.1
Ippolito, G.C.2
Beausang, J.3
Busse, C.E.4
Wardemann, H.5
Quake, S.R.6
-
31
-
-
84909946264
-
Highthroughput sequencing of human immunoglobulin variable regions with subtype identification
-
Schanz M, Liechti T, Zagordi O, Miho E, Reddy ST, Gunthard HF, Trkola A, Huber M. 2014 Highthroughput sequencing of human immunoglobulin variable regions with subtype identification. PLoS ONE 9, e111726. (doi:10.1371/journal.pone. 0111726)
-
(2014)
PLoS ONE
, vol.9
-
-
Schanz, M.1
Liechti, T.2
Zagordi, O.3
Miho, E.4
Reddy, S.T.5
Gunthard, H.F.6
Trkola, A.7
Huber, M.8
-
32
-
-
84905967681
-
B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes
-
t 248ra107
-
Stern JN et al. 2014 B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes. Sci. Transl. Med. 6, 248ra107. (doi:10.1126/ scitranslmed.3008879)
-
(2014)
Sci. Transl. Med
, vol.6
-
-
Stern, J.N.1
-
33
-
-
77953632929
-
Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements
-
Boyd SD et al. 2010 Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. J. Immunol. 184, 6986-6992. (doi:10.4049/jimmunol.1000445)
-
(2010)
J. Immunol
, vol.184
, pp. 6986-6992
-
-
Boyd, S.D.1
-
34
-
-
84874095196
-
Agerelated changes in human peripheral blood IGH repertoire following vaccination
-
Wu YC, Kipling D, Dunn-Walters DK. 2012 Agerelated changes in human peripheral blood IGH repertoire following vaccination. Front. Immunol. 3, 193. (doi:10.3389/fimmu.2012.00193)
-
(2012)
Front. Immunol
, vol.3
, pp. 193
-
-
Wu, Y.C.1
Kipling, D.2
Dunn-Walters, D.K.3
-
35
-
-
77956551877
-
High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations
-
Wu YC, Kipling D, Leong HS, Martin V, Ademokun AA, Dunn-Walters DK. 2010 High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations. Blood 116, 1070-1078. (doi:10.1182/blood-2010-03-275859)
-
(2010)
Blood
, vol.116
, pp. 1070-1078
-
-
Wu, Y.C.1
Kipling, D.2
Leong, H.S.3
Martin, V.4
Ademokun, A.A.5
Dunn-Walters, D.K.6
-
36
-
-
84897935016
-
Differences in the composition of the human antibody repertoire by B cell subsets in the blood
-
Mroczek ES et al. 2014 Differences in the composition of the human antibody repertoire by B cell subsets in the blood. Front. Immunol. 5, 96. (doi:10.3389/fimmu.2014.00096)
-
(2014)
Front. Immunol
, vol.5
, pp. 96
-
-
Mroczek, E.S.1
-
37
-
-
84897549848
-
High-resolution antibody dynamics of vaccine-induced immune responses
-
Laserson U et al. 2014 High-resolution antibody dynamics of vaccine-induced immune responses. Proc. Natl Acad. Sci. USA 111, 4928-4933. (doi:10. 1073/pnas.1323862111)
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 4928-4933
-
-
Laserson, U.1
-
38
-
-
84888251984
-
The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies
-
Sok D et al. 2013 The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies. PLoS Pathog. 9, e1003754. (doi:10.1371/ journal.ppat.1003754)
-
(2013)
PLoS Pathog
, vol.9
-
-
Sok, D.1
-
39
-
-
84925284996
-
In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire
-
DeKosky BJ, Kojima T, Rodin A, Charab W, Ippolito GC, Ellington AD, Georgiou G. 2015 In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire. Nat. Med. 21, 86-91. (doi:10.1038/nm.3743)
-
(2015)
Nat. Med
, vol.21
, pp. 86-91
-
-
DeKosky, B.J.1
Kojima, T.2
Rodin, A.3
Charab, W.4
Ippolito, G.C.5
Ellington, A.D.6
Georgiou, G.7
-
40
-
-
13444282315
-
Isoforms of terminal deoxynucleotidyltransferase: Developmental aspects and function
-
Thai TH, Kearney JF. 2005 Isoforms of terminal deoxynucleotidyltransferase: developmental aspects and function. Adv. Immunol. 86, 113-136. (doi:10. 1016/S0065-2776(04)86003-6)
-
(2005)
Adv. Immunol
, vol.86
, pp. 113-136
-
-
Thai, T.H.1
Kearney, J.F.2
-
41
-
-
0033068146
-
Atypical VH-D-JH rearrangements in newborn autoimmune MRL mice
-
Klonowski KD, Primiano LL, Monestier M. 1999 Atypical VH-D-JH rearrangements in newborn autoimmune MRL mice. J. Immunol. 162, 1566-1572.
-
(1999)
J. Immunol
, vol.162
, pp. 1566-1572
-
-
Klonowski, K.D.1
Primiano, L.L.2
Monestier, M.3
-
42
-
-
0032822989
-
Somatic mutation and light chain rearrangement generate autoimmunity in antisingle- stranded DNA transgenic MRL/lpr mice
-
Brard F, Shannon M, Luning Prak ET, Litwin S, Weigert M. 1999 Somatic mutation and light chain rearrangement generate autoimmunity in antisingle- stranded DNA transgenic MRL/lpr mice. J. Exp. Med. 190, 691-704. (doi:10.1084/jem.190. 5.691)
-
(1999)
J. Exp. Med
, vol.190
, pp. 691-704
-
-
Brard, F.1
Shannon, M.2
Luning Prak, E.T.3
Litwin, S.4
Weigert, M.5
-
43
-
-
84903741407
-
pRESTO: A toolkit for processing highthroughput sequencing raw reads of lymphocyte receptor repertoires
-
Vander Heiden JA, Yaari G, Uduman M, Stern JN, O'Connor KC, Hafler DA, Vigneault F, Kleinstein SH. 2014 pRESTO: a toolkit for processing highthroughput sequencing raw reads of lymphocyte receptor repertoires. Bioinformatics 30, 1930-1932. (doi:10.1093/bioinformatics/btu138)
-
(2014)
Bioinformatics
, vol.30
, pp. 1930-1932
-
-
Vander Heiden, J.A.1
Yaari, G.2
Uduman, M.3
Stern, J.N.4
O'Connor, K.C.5
Hafler, D.A.6
Vigneault, F.7
Kleinstein, S.H.8
-
44
-
-
57649176319
-
Ab-origin: An enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
-
Wang X, Wu D, Zheng S, Sun J, Tao L, Li Y, Cao Z. 2008 Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinformatics 9(Suppl. 12), S20. (doi:10.1186/1471-2105-9-S12-S20)
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Wang, X.1
Wu, D.2
Zheng, S.3
Sun, J.4
Tao, L.5
Li, Y.6
Cao, Z.7
-
45
-
-
84867350002
-
IMGT((R)) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)- J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS
-
Alamyar E, Duroux P, Lefranc MP, Giudicelli V. 2012 IMGT((R)) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)- J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS. Methods Mol. Biol. 882, 569-604. (doi:10.1007/ 978-1-61779-842-9_32)
-
(2012)
Methods Mol. Biol
, vol.882
, pp. 569-604
-
-
Alamyar, E.1
Duroux, P.2
Lefranc, M.P.3
Giudicelli, V.4
-
46
-
-
34547840205
-
iHMMune-align: Hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences
-
Gaeta BA, Malming HR, Jackson KJ, Bain ME, Wilson P, Collins AM. 2007 iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics 23, 1580-1587. (doi:10. 1093/bioinformatics/btm147)
-
(2007)
Bioinformatics
, vol.23
, pp. 1580-1587
-
-
Gaeta, B.A.1
Malming, H.R.2
Jackson, K.J.3
Bain, M.E.4
Wilson, P.5
Collins, A.M.6
-
47
-
-
32544437698
-
SoDA: Implementation of a 3D alignment algorithm for inference of antigen receptor recombinations
-
Volpe JM, Cowell LG, Kepler TB. 2006 SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinformatics 22, 438-444. (doi:10.1093/ bioinformatics/btk004)
-
(2006)
Bioinformatics
, vol.22
, pp. 438-444
-
-
Volpe, J.M.1
Cowell, L.G.2
Kepler, T.B.3
-
48
-
-
84883563447
-
IgBLAST: An immunoglobulin variable domain sequence analysis tool
-
Ye J, Ma N, Madden TL, Ostell JM. 2013 IgBLAST: an immunoglobulin variable domain sequence analysis tool. Nucleic Acids Res. 41, W34-W40. (doi:10. 1093/nar/gkt382)
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W34-W40
-
-
Ye, J.1
Ma, N.2
Madden, T.L.3
Ostell, J.M.4
-
49
-
-
84878073543
-
The restricted DH gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content
-
Benichou J, Glanville J, Luning Prak ET, Azran R, Kuo TC, Pons J, Desmarais C, Tsaban L, Louzoun Y. 2013 The restricted DH gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content. J. Immunol. 190, 5567-5577. (doi:10.4049/jimmunol.1201929)
-
(2013)
J. Immunol
, vol.190
, pp. 5567-5577
-
-
Benichou, J.1
Glanville, J.2
Luning Prak, E.T.3
Azran, R.4
Kuo, T.C.5
Pons, J.6
Desmarais, C.7
Tsaban, L.8
Louzoun, Y.9
-
50
-
-
77951949737
-
SoDA2: A hidden Markov model approach for identification of immunoglobulin rearrangements
-
Munshaw S, Kepler TB. 2010 SoDA2: a hidden Markov model approach for identification of immunoglobulin rearrangements. Bioinformatics 26, 867-872. (doi:10.1093/bioinformatics/btq056)
-
(2010)
Bioinformatics
, vol.26
, pp. 867-872
-
-
Munshaw, S.1
Kepler, T.B.2
-
51
-
-
0033521198
-
Somatic insertions and deletions shape the human antibody repertoire
-
de Wildt RM, van Venrooij WJ, Winter G, Hoet RM, Tomlinson IM. 1999 Somatic insertions and deletions shape the human antibody repertoire. J. Mol. Biol. 294, 701-710. (doi:10.1006/jmbi. 1999.3289)
-
(1999)
J. Mol. Biol
, vol.294
, pp. 701-710
-
-
de Wildt, R.M.1
van Venrooij, W.J.2
Winter, G.3
Hoet, R.M.4
Tomlinson, I.M.5
-
52
-
-
0031858512
-
Insertions and deletions in hypervariable loops of antibody heavy chains contribute to molecular diversity
-
Ohlin M, Borrebaeck CA. 1998 Insertions and deletions in hypervariable loops of antibody heavy chains contribute to molecular diversity. Mol. Immunol. 35, 233-238. (doi:10.1016/S0161- 5890(98)00030-3)
-
(1998)
Mol. Immunol
, vol.35
, pp. 233-238
-
-
Ohlin, M.1
Borrebaeck, C.A.2
-
53
-
-
0031983725
-
Somatic hypermutation introduces insertions and deletions into immunoglobulin V genes
-
Wilson PC, de Bouteiller O, Liu YJ, Potter K, Banchereau J, Capra JD, Pascual V. 1998 Somatic hypermutation introduces insertions and deletions into immunoglobulin V genes. J. Exp. Med. 187, 59-70. (doi:10.1084/jem.187.1.59)
-
(1998)
J. Exp. Med
, vol.187
, pp. 59-70
-
-
Wilson, P.C.1
de Bouteiller, O.2
Liu, Y.J.3
Potter, K.4
Banchereau, J.5
Capra, J.D.6
Pascual, V.7
-
54
-
-
84876272159
-
Mining the antibodyome for HIV- 1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains
-
Zhu J et al. 2013 Mining the antibodyome for HIV- 1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains. Proc. Natl Acad. Sci. USA 110, 6470-6475. (doi:10.1073/pnas.1219320110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 6470-6475
-
-
Zhu, J.1
-
55
-
-
84904263671
-
Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements
-
Jackson KJ et al. 2014 Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. Cell Host Microbe 16, 105-114. (doi:10.1016/j.chom.2014.05.013)
-
(2014)
Cell Host Microbe
, vol.16
, pp. 105-114
-
-
Jackson, K.J.1
-
56
-
-
84895765184
-
Persistence and selection of an expanded B-cell clone in the setting of rituximab therapy for Sjogren's syndrome
-
Hershberg U et al. 2014 Persistence and selection of an expanded B-cell clone in the setting of rituximab therapy for Sjogren's syndrome. Arthritis Res. Ther. 16, R51. (doi:10.1186/ar4481)
-
(2014)
Arthritis Res. Ther
, vol.16
-
-
Hershberg, U.1
-
57
-
-
67349190508
-
Clonal expansion of B-cells in human systemic lupus erythematosus: Evidence from studies before and after therapeutic B-cell depletion
-
Sfikakis PP, Karali V, Lilakos K, Georgiou G, Panayiotidis P. 2009 Clonal expansion of B-cells in human systemic lupus erythematosus: evidence from studies before and after therapeutic B-cell depletion. Clin. Immunol. 132, 19-31. (doi:10. 1016/j.clim.2009.02.010)
-
(2009)
Clin. Immunol
, vol.132
, pp. 19-31
-
-
Sfikakis, P.P.1
Karali, V.2
Lilakos, K.3
Georgiou, G.4
Panayiotidis, P.5
-
58
-
-
84862961025
-
High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment
-
Logan AC et al. 2011 High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Proc. Natl Acad. Sci. USA 108, 21 194-21 199. (doi:10.1073/pnas.1118357109)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 21 194-21 199
-
-
Logan, A.C.1
-
59
-
-
84900860392
-
Using synthetic templates to design an unbiased multiplex PCR assay
-
Carlson CS et al. 2013 Using synthetic templates to design an unbiased multiplex PCR assay. Nat. Commun. 4, 2680. (doi:10.1038/ ncomms3680)
-
(2013)
Nat. Commun
, vol.4
, pp. 2680
-
-
Carlson, C.S.1
-
60
-
-
84923870910
-
Quantitative assessment of the robustness of nextgeneration sequencing of antibody variable gene repertoires from immunized mice
-
Greiff V, Menzel U, Haessler U, Cook SC, Friedensohn S, Khan TA, Pogson M, Hellmann I, Reddy ST. 2014 Quantitative assessment of the robustness of nextgeneration sequencing of antibody variable gene repertoires from immunized mice. BMC Immunol. 15, 40. (doi:10.1186/s12865-014-0040-5)
-
(2014)
BMC Immunol
, vol.15
, pp. 40
-
-
Greiff, V.1
Menzel, U.2
Haessler, U.3
Cook, S.C.4
Friedensohn, S.5
Khan, T.A.6
Pogson, M.7
Hellmann, I.8
Reddy, S.T.9
-
61
-
-
0001034646
-
Properties of the Rarefaction Diversity Measurement
-
Simberloff D. 1972 Properties of the Rarefaction Diversity Measurement. Am. Nat. 106, 414-418. (doi:10.1086/282781)
-
(1972)
Am. Nat
, vol.106
, pp. 414-418
-
-
Simberloff, D.1
-
62
-
-
33748937755
-
Statistical analysis of CDR3 length distributions for the assessment of T and B cell repertoire biases
-
Miqueu P, Guillet M, Degauque N, Dore JC, Soulillou JP, Brouard S. 2007 Statistical analysis of CDR3 length distributions for the assessment of T and B cell repertoire biases. Mol. Immunol. 44, 1057-1064. (doi:10.1016/j.molimm.2006.06.026)
-
(2007)
Mol. Immunol
, vol.44
, pp. 1057-1064
-
-
Miqueu, P.1
Guillet, M.2
Degauque, N.3
Dore, J.C.4
Soulillou, J.P.5
Brouard, S.6
-
63
-
-
0041689676
-
Predominant autoantibody production by early human B cell precursors
-
Wardemann H, Yurasov S, Schaefer A, Young JW, Meffre E, Nussenzweig MC. 2003 Predominant autoantibody production by early human B cell precursors. Science 301, 1374-1377. (doi:10.1126/ science.1086907)
-
(2003)
Science
, vol.301
, pp. 1374-1377
-
-
Wardemann, H.1
Yurasov, S.2
Schaefer, A.3
Young, J.W.4
Meffre, E.5
Nussenzweig, M.C.6
-
64
-
-
0022502863
-
Recombination between an expressed immunoglobulin heavy-chain gene and a germline variable gene segment in a Ly 1þ B-cell lymphoma
-
Kleinfield R, Hardy RR, Tarlinton D, Dangl J, Herzenberg LA, Weigert M. 1986 Recombination between an expressed immunoglobulin heavy-chain gene and a germline variable gene segment in a Ly 1þ B-cell lymphoma. Nature 322, 843-846. (doi:10.1038/322843a0)
-
(1986)
Nature
, vol.322
, pp. 843-846
-
-
Kleinfield, R.1
Hardy, R.R.2
Tarlinton, D.3
Dangl, J.4
Herzenberg, L.A.5
Weigert, M.6
-
65
-
-
0022557584
-
A novel VH to VHDJH joining mechanism in heavychain- negative (null) pre-B cells results in heavy-chain production
-
Reth M, Gehrmann P, Petrac E, Wiese P. 1986 A novel VH to VHDJH joining mechanism in heavychain- negative (null) pre-B cells results in heavy-chain production. Nature 322, 840-842. (doi:10.1038/322840a0)
-
(1986)
Nature
, vol.322
, pp. 840-842
-
-
Reth, M.1
Gehrmann, P.2
Petrac, E.3
Wiese, P.4
-
66
-
-
84895521131
-
Trials and tribulations with VH replacement
-
Meng W, Jayaraman S, Zhang B, Schwartz GW, Daber RD, Hershberg U, Garfall AL, Carlson CS, Luning Prak ET. 2014 Trials and tribulations with VH replacement. Front. Immunol. 5, 10. (doi:10.3389/ fimmu.2014.00010)
-
(2014)
Front. Immunol
, vol.5
, pp. 10
-
-
Meng, W.1
Jayaraman, S.2
Zhang, B.3
Schwartz, G.W.4
Daber, R.D.5
Hershberg, U.6
Garfall, A.L.7
Carlson, C.S.8
Luning Prak, E.T.9
-
67
-
-
84901857468
-
Towards error-free profiling of immune repertoires
-
Shugay M et al. 2014 Towards error-free profiling of immune repertoires. Nat. Methods 11, 653-655. (doi:10.1038/nmeth.2960)
-
(2014)
Nat. Methods
, vol.11
, pp. 653-655
-
-
Shugay, M.1
-
68
-
-
84887274212
-
Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing
-
Aita T, Ichihashi N, Yomo T. 2013 Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing. Comput. Biol. Chem. 47, 221-230. (doi:10.1016/j.compbiolchem.2013.09.006)
-
(2013)
Comput. Biol. Chem
, vol.47
, pp. 221-230
-
-
Aita, T.1
Ichihashi, N.2
Yomo, T.3
-
70
-
-
84876933570
-
Shining a light on dark sequencing: Characterising errors in Ion Torrent PGM data
-
Bragg LM, Stone G, Butler MK, Hugenholtz P, Tyson GW. 2013 Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data. PLoS Comput. Biol. 9, e1003031. (doi:10.1371/journal. pcbi.1003031)
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Bragg, L.M.1
Stone, G.2
Butler, M.K.3
Hugenholtz, P.4
Tyson, G.W.5
-
71
-
-
84893173383
-
SInC: An accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data
-
Pattnaik S, Gupta S, Rao AA, Panda B. 2014 SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data. BMC Bioinformatics 15, 40. (doi:10.1186/1471-2105- 15-40)
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 40
-
-
Pattnaik, S.1
Gupta, S.2
Rao, A.A.3
Panda, B.4
-
72
-
-
80053913719
-
454 antibody sequencing - error characterization and correction
-
Prabakaran P, Streaker E, Chen W, Dimitrov DS. 2011 454 antibody sequencing - error characterization and correction. BMC Res. Notes 4, 404. (doi:10. 1186/1756-0500-4-404)
-
(2011)
BMC Res. Notes
, vol.4
, pp. 404
-
-
Prabakaran, P.1
Streaker, E.2
Chen, W.3
Dimitrov, D.S.4
-
73
-
-
84890386468
-
Sequencing error correction without a reference genome
-
Sleep JA, Schreiber AW, Baumann U. 2013 Sequencing error correction without a reference genome. BMC Bioinformatics 14, 367. (doi:10.1186/ 1471-2105-14-367)
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 367
-
-
Sleep, J.A.1
Schreiber, A.W.2
Baumann, U.3
-
74
-
-
84882432416
-
Genetic measurement of memory B-cell recall using antibody repertoire sequencing
-
Vollmers C, Sit RV, Weinstein JA, Dekker CL, Quake SR. 2013 Genetic measurement of memory B-cell recall using antibody repertoire sequencing. Proc. Natl Acad. Sci. USA 110, 13 463-13 468. (doi:10. 1073/pnas.1312146110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 13 463-13 468
-
-
Vollmers, C.1
Sit, R.V.2
Weinstein, J.A.3
Dekker, C.L.4
Quake, S.R.5
-
75
-
-
84921933739
-
Novel exons and splice variants in the human antibody heavy chain identified by single cell and single molecule sequencing
-
Vollmers C, Penland L, Kanbar JN, Quake SR. 2015 Novel exons and splice variants in the human antibody heavy chain identified by single cell and single molecule sequencing. PLoS ONE 10, e0117050. (doi:10.1371/journal.pone.0117050)
-
(2015)
PLoS ONE
, vol.10
-
-
Vollmers, C.1
Penland, L.2
Kanbar, J.N.3
Quake, S.R.4
-
76
-
-
42949103482
-
Improved methods for detecting selection by mutation analysis of Ig V region sequences
-
Hershberg U, Uduman M, Shlomchik MJ, Kleinstein SH. 2008 Improved methods for detecting selection by mutation analysis of Ig V region sequences. Int. Immunol. 20, 683-694. (doi:10.1093/intimm/ dxn026)
-
(2008)
Int. Immunol
, vol.20
, pp. 683-694
-
-
Hershberg, U.1
Uduman, M.2
Shlomchik, M.J.3
Kleinstein, S.H.4
-
77
-
-
84866933098
-
Quantifying selection in high-throughput Immunoglobulin sequencing data sets
-
Yaari G, Uduman M, Kleinstein SH. 2012 Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 40, e134. (doi:10.1093/nar/gks457)
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Yaari, G.1
Uduman, M.2
Kleinstein, S.H.3
-
78
-
-
50949103123
-
IgTree: Creating Immunoglobulin variable region gene lineage trees
-
Barak M, Zuckerman NS, Edelman H, Unger R, Mehr R. 2008 IgTree: creating Immunoglobulin variable region gene lineage trees. J. Immunol. Methods 338, 67-74. (doi:10.1016/j.jim.2008.06.006)
-
(2008)
J. Immunol. Methods
, vol.338
, pp. 67-74
-
-
Barak, M.1
Zuckerman, N.S.2
Edelman, H.3
Unger, R.4
Mehr, R.5
-
79
-
-
34248381619
-
Lineage tree analysis of immunoglobulin variable-region gene mutations in autoimmune diseases: Chronic activation, normal selection
-
Steiman-Shimony A et al. 2006 Lineage tree analysis of immunoglobulin variable-region gene mutations in autoimmune diseases: chronic activation, normal selection. Cell Immunol. 244, 130-136. (doi:10.1016/j.cellimm.2007.01.009)
-
(2006)
Cell Immunol
, vol.244
, pp. 130-136
-
-
Steiman-Shimony, A.1
-
80
-
-
0142149019
-
Estimating hypermutation rates from clonal tree data
-
Kleinstein SH, Louzoun Y, Shlomchik MJ. 2003 Estimating hypermutation rates from clonal tree data. J. Immunol. 171, 4639-4649. (doi:10.4049/ jimmunol.171.9.4639)
-
(2003)
J. Immunol
, vol.171
, pp. 4639-4649
-
-
Kleinstein, S.H.1
Louzoun, Y.2
Shlomchik, M.J.3
-
81
-
-
84893392457
-
Integrating B cell lineage information into statistical tests for detecting selection in Ig sequences
-
Uduman M, Shlomchik MJ, Vigneault F, Church GM, Kleinstein SH. 2014 Integrating B cell lineage information into statistical tests for detecting selection in Ig sequences. J. Immunol. 192, 867-874. (doi:10.4049/jimmunol.1301551)
-
(2014)
J. Immunol
, vol.192
, pp. 867-874
-
-
Uduman, M.1
Shlomchik, M.J.2
Vigneault, F.3
Church, G.M.4
Kleinstein, S.H.5
-
82
-
-
85020749117
-
Estimate of within population incremental selection through branch imbalance in lineage trees
-
Liberman G, Benichou J, Tsaban L, Maman Y, Glanville J, Louzoun Y. 2014 Estimate of within population incremental selection through branch imbalance in lineage trees. bioRxiv (doi:10.1101/ 002014)
-
(2014)
Biorxiv
-
-
Liberman, G.1
Benichou, J.2
Tsaban, L.3
Maman, Y.4
Glanville, J.5
Louzoun, Y.6
-
83
-
-
85000360533
-
Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors
-
Kepler TB. 2013 Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors. F1000Research 2, 103. (doi:10.12688/ f1000research.2-103.v1)
-
(2013)
F1000Research
, vol.2
, pp. 103
-
-
Kepler, T.B.1
-
84
-
-
84905649836
-
Immunoglobulin gene repertoire diversification and selection in the stomach-from gastritis to gastric lymphomas
-
Michaeli M et al. 2014 Immunoglobulin gene repertoire diversification and selection in the stomach-from gastritis to gastric lymphomas. Front. Immunol. 5, 264. (doi:10.3389/fimmu.2014. 00264)
-
(2014)
Front. Immunol
, vol.5
, pp. 264
-
-
Michaeli, M.1
-
85
-
-
33947316710
-
Methods for comparing the diversity of samples of the T cell receptor repertoire
-
Venturi V, Kedzierska K, Turner SJ, Doherty PC, Davenport MP. 2007 Methods for comparing the diversity of samples of the T cell receptor repertoire. J. Immunol. Methods 321, 182-195. (doi:10.1016/j. jim.2007.01.019)
-
(2007)
J. Immunol. Methods
, vol.321
, pp. 182-195
-
-
Venturi, V.1
Kedzierska, K.2
Turner, S.J.3
Doherty, P.C.4
Davenport, M.P.5
-
86
-
-
33646876613
-
Entropy and diversity
-
Jost L. 2006 Entropy and diversity. Oikos 113, 363-375. (doi:10.1111/j.2006.0030-1299.14714.x)
-
(2006)
Oikos
, vol.113
, pp. 363-375
-
-
Jost, L.1
-
87
-
-
84900993014
-
Comprehensive evaluation and optimization of amplicon library preparation methods for highthroughput antibody sequencing
-
Menzel U, Greiff V, Khan TA, Haessler U, Hellmann I, Friedensohn S, Cook SC, Pogson M, Reddy ST. 2014 Comprehensive evaluation and optimization of amplicon library preparation methods for highthroughput antibody sequencing. PLoS ONE 9, e96727. (doi:10.1371/journal.pone.0096727)
-
(2014)
PLoS ONE
, vol.9
-
-
Menzel, U.1
Greiff, V.2
Khan, T.A.3
Haessler, U.4
Hellmann, I.5
Friedensohn, S.6
Cook, S.C.7
Pogson, M.8
Reddy, S.T.9
-
88
-
-
84903584311
-
Assessment of microbial diversity bias associated with soil heterogeneity and sequencing resolution in pyrosequencing analyses
-
Jung SP, Kang H. 2014 Assessment of microbial diversity bias associated with soil heterogeneity and sequencing resolution in pyrosequencing analyses. J. Microbiol. 52, 574-580. (doi:10.1007/s12275- 014-3636-9)
-
(2014)
J. Microbiol
, vol.52
, pp. 574-580
-
-
Jung, S.P.1
Kang, H.2
-
89
-
-
49249113020
-
Discovering and rediscovering the sample-based rarefaction formula in the ecological literature
-
Chiarucci A, Bacaro G, Rocchini D, Fattorini L. 2008 Discovering and rediscovering the sample-based rarefaction formula in the ecological literature. Commun. Ecol. 9, 121-123. (doi:10.1556/ComEc.9. 2008.1.14)
-
(2008)
Commun. Ecol
, vol.9
, pp. 121-123
-
-
Chiarucci, A.1
Bacaro, G.2
Rocchini, D.3
Fattorini, L.4
-
90
-
-
68849132448
-
Patterns and causes of species richness: A general simulation model for macroecology
-
Gotelli NJ et al. 2009 Patterns and causes of species richness: a general simulation model for macroecology. Ecol. Lett. 12, 873-886. (doi:10. 1111/j.1461-0248.2009.01353.x)
-
(2009)
Ecol. Lett
, vol.12
, pp. 873-886
-
-
Gotelli, N.J.1
-
91
-
-
84867095375
-
Statistical inference of the generation probability of T-cell receptors from sequence repertoires
-
Murugan A, Mora T, Walczak AM, Callan Jr CG. 2012 Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proc. Natl Acad. Sci. USA 109, 16 161-16 166. (doi:10.1073/ pnas.1212755109)
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 16 161-16 166
-
-
Murugan, A.1
Mora, T.2
Walczak, A.M.3
Callan Jr, C.G.4
-
92
-
-
77950541195
-
Comprehensive assessment of T-cell receptor b-chain diversity in ab T cells
-
Robins HS, Campregher PV, Srivastava SK, Wacher A, Turtle CJ, Kahsai O, Riddell SR, Warren EH, Carlson CS. 2009 Comprehensive assessment of T-cell receptor b-chain diversity in ab T cells. Blood 114, 4099-4107. (doi:10.1182/blood-2009- 04-217604)
-
(2009)
Blood
, vol.114
, pp. 4099-4107
-
-
Robins, H.S.1
Campregher, P.V.2
Srivastava, S.K.3
Wacher, A.4
Turtle, C.J.5
Kahsai, O.6
Riddell, S.R.7
Warren, E.H.8
Carlson, C.S.9
-
93
-
-
84907001176
-
Diversity and clonal selection in the human T-cell repertoire
-
Qi Q et al. 2014 Diversity and clonal selection in the human T-cell repertoire. Proc. Natl Acad. Sci. USA 111, 13 139-13 144. (doi:10.1073/pnas. 1409155111)
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 13 139-13 144
-
-
Qi, Q.1
-
94
-
-
84925883542
-
Characterization of human abTCR repertoire and discovery of D-D fusion in TCRb chains
-
Liu P et al. 2014 Characterization of human abTCR repertoire and discovery of D-D fusion in TCRb chains. Protein Cell 5, 603-615. (doi:10.1007/ s13238-014-0060-1)
-
(2014)
Protein Cell
, vol.5
, pp. 603-615
-
-
Liu, P.1
-
95
-
-
84864762364
-
Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire
-
Briney BS, Willis JR, Hicar MD, Thomas 2nd JW, Crowe Jr JE. 2012 Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire. Immunology 137, 56-64. (doi:10.1111/j.1365- 2567.2012.03605.x)
-
(2012)
Immunology
, vol.137
, pp. 56-64
-
-
Briney, B.S.1
Willis, J.R.2
Hicar, M.D.3
Thomas, J.W.4
Crowe, J.E.5
-
96
-
-
73949116413
-
Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire
-
Glanville J et al. 2009 Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc. Natl Acad. Sci. USA 106, 20 216-20 221. (doi:10.1073/pnas.0909775106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 20 216-20 221
-
-
Glanville, J.1
-
97
-
-
0023684162
-
Developmentally regulated and strain-specific expression of murine VH gene families
-
Yancopoulos GD, Malynn BA, Alt FW. 1988 Developmentally regulated and strain-specific expression of murine VH gene families. J. Exp. Med. 168, 417-435. (doi:10.1084/jem.168.1.417)
-
(1988)
J. Exp. Med
, vol.168
, pp. 417-435
-
-
Yancopoulos, G.D.1
Malynn, B.A.2
Alt, F.W.3
-
98
-
-
0034053443
-
Development and function of B-1 cells
-
Hayakawa K, Hardy RR. 2000 Development and function of B-1 cells. Curr. Opin. Immunol. 12, 346-353. (doi:10.1016/S0952-7915(00)00098-4)
-
(2000)
Curr. Opin. Immunol
, vol.12
, pp. 346-353
-
-
Hayakawa, K.1
Hardy, R.R.2
-
99
-
-
64149127591
-
Somatic hypermutation in peritoneal B1b cells
-
Roy B, Shukla S, Lyszkiewicz M, Krey M, Viegas N, Duber S, Weiss S. 2009 Somatic hypermutation in peritoneal B1b cells. Mol. Immunol. 46, 1613-1619. (doi:10.1016/j.molimm.2009.02.026)
-
(2009)
Mol. Immunol
, vol.46
, pp. 1613-1619
-
-
Roy, B.1
Shukla, S.2
Lyszkiewicz, M.3
Krey, M.4
Viegas, N.5
Duber, S.6
Weiss, S.7
-
100
-
-
0037306952
-
V(D)J recombinatorial repertoire diversification during intraclonal pro-B to B-cell differentiation
-
Wang YH, Zhang Z, Burrows PD, Kubagawa H, Bridges Jr SL, Findley HW, Cooper MD. 2003 V(D)J recombinatorial repertoire diversification during intraclonal pro-B to B-cell differentiation. Blood 101, 1030-1037. (doi:10.1182/blood-2002- 06-1828)
-
(2003)
Blood
, vol.101
, pp. 1030-1037
-
-
Wang, Y.H.1
Zhang, Z.2
Burrows, P.D.3
Kubagawa, H.4
Bridges Jr, S.L.5
Findley, H.W.6
Cooper, M.D.7
-
101
-
-
84861033763
-
Stereotyped B-cell receptors in one-third of chronic lymphocytic leukemia: A molecular classification with implications for targeted therapies
-
Agathangelidis A et al. 2012 Stereotyped B-cell receptors in one-third of chronic lymphocytic leukemia: a molecular classification with implications for targeted therapies. Blood 119, 4467-4475. (doi:10.1182/blood-2011-11-393694)
-
(2012)
Blood
, vol.119
, pp. 4467-4475
-
-
Agathangelidis, A.1
-
102
-
-
4344704897
-
Multiple distinct sets of stereotyped antigen receptors indicate a role for antigen in promoting chronic lymphocytic leukemia
-
Messmer BT et al. 2004 Multiple distinct sets of stereotyped antigen receptors indicate a role for antigen in promoting chronic lymphocytic leukemia. J. Exp. Med. 200, 519-525. (doi:10.1084/jem. 20040544)
-
(2004)
J. Exp. Med
, vol.200
, pp. 519-525
-
-
Messmer, B.T.1
-
103
-
-
84875783393
-
The significance of stereotyped B-cell receptors in chronic lymphocytic leukemia
-
Darzentas N, Stamatopoulos K. 2013 The significance of stereotyped B-cell receptors in chronic lymphocytic leukemia. Hematol. Oncol. Clin. N. Am. 27, 237-250. (doi:10.1016/j.hoc.2012.12.001)
-
(2013)
Hematol. Oncol. Clin. N. Am
, vol.27
, pp. 237-250
-
-
Darzentas, N.1
Stamatopoulos, K.2
-
104
-
-
77952965028
-
Many chronic lymphocytic leukemia antibodies recognize apoptotic cells with exposed nonmuscle myosin heavy chain IIA: Implications for patient outcome and cell of origin
-
Chu CC et al. 2010 Many chronic lymphocytic leukemia antibodies recognize apoptotic cells with exposed nonmuscle myosin heavy chain IIA: implications for patient outcome and cell of origin. Blood 115, 3907-3915. (doi:10.1182/blood-2009- 09-244251)
-
(2010)
Blood
, vol.115
, pp. 3907-3915
-
-
Chu, C.C.1
-
105
-
-
58849160942
-
Evidence for the significant role of immunoglobulin light chains in antigen recognition and selection in chronic lymphocytic leukemia
-
Hadzidimitriou A et al. 2009 Evidence for the significant role of immunoglobulin light chains in antigen recognition and selection in chronic lymphocytic leukemia. Blood 113, 403-411. (doi:10.1182/blood-2008-07-166868)
-
(2009)
Blood
, vol.113
, pp. 403-411
-
-
Hadzidimitriou, A.1
-
106
-
-
84897110727
-
Analysis of the IGHV region in Burkitt's lymphomas supports a germinal center origin and a role for superantigens in lymphomagenesis
-
Baptista MJ, Calpe E, Fernandez E, Colomo L, Cardesa-Salzmann TM, Abrisqueta P, Bosch F, Crespo M. 2014 Analysis of the IGHV region in Burkitt's lymphomas supports a germinal center origin and a role for superantigens in lymphomagenesis. Leukemia Res. 38, 509-515. (doi:10.1016/j.leukres.2014.01.001)
-
(2014)
Leukemia Res
, vol.38
, pp. 509-515
-
-
Baptista, M.J.1
Calpe, E.2
Fernandez, E.3
Colomo, L.4
Cardesa-Salzmann, T.M.5
Abrisqueta, P.6
Bosch, F.7
Crespo, M.8
-
107
-
-
77957776534
-
Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma
-
Zibellini S et al. 2010 Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma. Haematologica 95, 1792-1796. (doi:10.3324/ haematol.2010.025437)
-
(2010)
Haematologica
, vol.95
, pp. 1792-1796
-
-
Zibellini, S.1
-
108
-
-
18244385722
-
Among B cell non-Hodgkin's lymphomas, MALT lymphomas express a unique antibody repertoire with frequent rheumatoid factor reactivity
-
Bende RJ, Aarts WM, Riedl RG, de Jong D, Pals ST, van Noesel CJ. 2005 Among B cell non-Hodgkin's lymphomas, MALT lymphomas express a unique antibody repertoire with frequent rheumatoid factor reactivity. J. Exp. Med. 201, 1229-1241. (doi:10. 1084/jem.20050068)
-
(2005)
J. Exp. Med
, vol.201
, pp. 1229-1241
-
-
Bende, R.J.1
Aarts, W.M.2
Riedl, R.G.3
de Jong, D.4
Pals, S.T.5
van Noesel, C.J.6
-
109
-
-
84869887947
-
Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes
-
Arentz G, Thurgood LA, Lindop R, Chataway TK, Gordon TP. 2012 Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes. J. Autoimmunity 39, 466-470. (doi:10.1016/j.jaut.2012.07.003)
-
(2012)
J. Autoimmunity
, vol.39
, pp. 466-470
-
-
Arentz, G.1
Thurgood, L.A.2
Lindop, R.3
Chataway, T.K.4
Gordon, T.P.5
-
110
-
-
1642355937
-
Lupus IgG VH4. 34 antibodies bind to a 220- kDa glycoform of CD45/B220 on the surface of human B lymphocytes
-
Cappione AJ, Pugh-Bernard AE, Anolik JH, Sanz I. 2004 Lupus IgG VH4.34 antibodies bind to a 220- kDa glycoform of CD45/B220 on the surface of human B lymphocytes. J. Immunol. 172, 4298-4307 (doi:10.4049/jimmunol.172.7.4298)
-
(2004)
J. Immunol
, vol.172
, pp. 4298-4307
-
-
Cappione, A.J.1
Pugh-Bernard, A.E.2
Anolik, J.H.3
Sanz, I.4
-
111
-
-
84914674305
-
The splenic autoimmune response to ADAMTS13 in thrombotic thrombocytopenic purpura contains recurrent antigen-binding CDR3 motifs
-
Schaller M, Vogel M, Kentouche K, Lammle B, Kremer Hovinga JA. 2014 The splenic autoimmune response to ADAMTS13 in thrombotic thrombocytopenic purpura contains recurrent antigen-binding CDR3 motifs. Blood 124, 3469-3479. (doi:10.1182/blood-2014-04-561142)
-
(2014)
Blood
, vol.124
, pp. 3469-3479
-
-
Schaller, M.1
Vogel, M.2
Kentouche, K.3
Lammle, B.4
Kremer Hovinga, J.A.5
-
112
-
-
0037103361
-
Genetic analysis of autoantibodies in idiopathic thrombocytopenic purpura reveals evidence of clonal expansion and somatic mutation
-
Roark JH, Bussel JB, Cines DB, Siegel DL. 2002 Genetic analysis of autoantibodies in idiopathic thrombocytopenic purpura reveals evidence of clonal expansion and somatic mutation. Blood 100, 1388-1398.
-
(2002)
Blood
, vol.100
, pp. 1388-1398
-
-
Roark, J.H.1
Bussel, J.B.2
Cines, D.B.3
Siegel, D.L.4
-
113
-
-
78049440518
-
Homologous regions of autoantibody heavy chain complementaritydetermining region 3 (H-CDR3) in patients with pemphigus cause pathogenicity
-
Yamagami J, Payne AS, Kacir S, Ishii K, Siegel DL, Stanley JR. 2010 Homologous regions of autoantibody heavy chain complementaritydetermining region 3 (H-CDR3) in patients with pemphigus cause pathogenicity. J. Clin. Invest. 120, 4111-4117. (doi:10.1172/JCI44425)
-
(2010)
J. Clin. Invest
, vol.120
, pp. 4111-4117
-
-
Yamagami, J.1
Payne, A.S.2
Kacir, S.3
Ishii, K.4
Siegel, D.L.5
Stanley, J.R.6
-
114
-
-
0026049326
-
Variable region diversity in human circulating antibodies specific for the capsular polysaccharide of Haemophilus influenzae type b. Preferential usage of two types of VH3 heavy chains
-
Silverman GJ, Lucas AH. 1991 Variable region diversity in human circulating antibodies specific for the capsular polysaccharide of Haemophilus influenzae type b. Preferential usage of two types of VH3 heavy chains. J. Clin. Invest. 88, 911-920. (doi:10.1172/JCI115394)
-
(1991)
J. Clin. Invest
, vol.88
, pp. 911-920
-
-
Silverman, G.J.1
Lucas, A.H.2
-
115
-
-
0024365916
-
Clonal characterization of the human IgG antibody repertoire to Haemophilus influenzae type b polysaccharide. II. IgG antibodies contain VH genes from a single VH family and VL genes from at least four VL families
-
Scott MG, Tarrand JJ, Crimmins DL, McCourt DW, Siegel NR, Smith CE, Nahm MH. 1989 Clonal characterization of the human IgG antibody repertoire to Haemophilus influenzae type b polysaccharide. II. IgG antibodies contain VH genes from a single VH family and VL genes from at least four VL families. J. Immunol. 143, 293-298.
-
(1989)
J. Immunol
, vol.143
, pp. 293-298
-
-
Scott, M.G.1
Tarrand, J.J.2
Crimmins, D.L.3
McCourt, D.W.4
Siegel, N.R.5
Smith, C.E.6
Nahm, M.H.7
-
116
-
-
84878082007
-
Igs expressed by chronic lymphocytic leukemia B cells show limited bindingsite structure variability
-
Marcatili P et al. 2013 Igs expressed by chronic lymphocytic leukemia B cells show limited bindingsite structure variability. J. Immunol. 190, 5771-5778. (doi:10.4049/jimmunol.1300321)
-
(2013)
J. Immunol
, vol.190
, pp. 5771-5778
-
-
Marcatili, P.1
-
118
-
-
0037076279
-
Human chronic lymphocytic leukemia modeled in mouse by targeted TCL1 expression
-
Bichi R, Shinton SA, Martin ES, Koval A, Calin GA, Cesari R, Russo G, Hardy RR, Croce CM. 2002 Human chronic lymphocytic leukemia modeled in mouse by targeted TCL1 expression. Proc. Natl Acad. Sci. USA 99, 6955-6960. (doi:10.1073/pnas.102181599)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6955-6960
-
-
Bichi, R.1
Shinton, S.A.2
Martin, E.S.3
Koval, A.4
Calin, G.A.5
Cesari, R.6
Russo, G.7
Hardy, R.R.8
Croce, C.M.9
-
119
-
-
84908465046
-
Silenced B-cell receptor response to autoantigen in a poor-prognostic subset of chronic lymphocytic leukemia
-
Bergh AC, Evaldsson C, Pedersen LB, Geisler C, Stamatopoulos K, Rosenquist R, Rosen A. 2014 Silenced B-cell receptor response to autoantigen in a poor-prognostic subset of chronic lymphocytic leukemia. Haematologica 99, 1722-1730. (doi:10. 3324/haematol.2014.106054)
-
(2014)
Haematologica
, vol.99
, pp. 1722-1730
-
-
Bergh, A.C.1
Evaldsson, C.2
Pedersen, L.B.3
Geisler, C.4
Stamatopoulos, K.5
Rosenquist, R.6
Rosen, A.7
-
120
-
-
38949203770
-
Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: Implications for the role of antigen selection in leukemogenesis
-
Murray F et al. 2008 Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis. Blood 111, 1524-1533. (doi:10.1182/blood-2007-07- 099564)
-
(2008)
Blood
, vol.111
, pp. 1524-1533
-
-
Murray, F.1
-
121
-
-
0029550451
-
Origins of anti-DNA antibodies and their implications for B-cell tolerance
-
Radic MZ, Weigert M. 1995 Origins of anti-DNA antibodies and their implications for B-cell tolerance. Ann. N.Y. Acad. Sci. 764, 384-396. (doi:10.1111/j.1749-6632.1995.tb55853.x)
-
(1995)
Ann. N.Y. Acad. Sci
, vol.764
, pp. 384-396
-
-
Radic, M.Z.1
Weigert, M.2
-
122
-
-
70349446481
-
Anti-nuclear antibody reactivity in lupus may be partly hard-wired into the primary B-cell repertoire
-
Chang S et al. 2009 Anti-nuclear antibody reactivity in lupus may be partly hard-wired into the primary B-cell repertoire. Mol. Immunol. 46, 3420-3426. (doi:10.1016/j.molimm.2009.07.014)
-
(2009)
Mol. Immunol
, vol.46
, pp. 3420-3426
-
-
Chang, S.1
-
123
-
-
0023251534
-
The role of clonal selection and somatic mutation in autoimmunity
-
Shlomchik MJ, Marshak-Rothstein A, Wolfowicz CB, Rothstein TL, Weigert MG. 1987 The role of clonal selection and somatic mutation in autoimmunity. Nature 328, 805-811. (doi:10.1038/ 328805a0)
-
(1987)
Nature
, vol.328
, pp. 805-811
-
-
Shlomchik, M.J.1
Marshak-Rothstein, A.2
Wolfowicz, C.B.3
Rothstein, T.L.4
Weigert, M.G.5
-
124
-
-
0035525528
-
From T to B and back again: Positive feedback in systemic autoimmune disease
-
Shlomchik MJ, Craft JE, Mamula MJ. 2001 From T to B and back again: positive feedback in systemic autoimmune disease. Nat. Rev. Immunol. 1, 147-153. (doi:10.1038/35100573)
-
(2001)
Nat. Rev. Immunol
, vol.1
, pp. 147-153
-
-
Shlomchik, M.J.1
Craft, J.E.2
Mamula, M.J.3
-
125
-
-
33750369226
-
Toll-like receptors in systemic autoimmune disease
-
Marshak-Rothstein A. 2006 Toll-like receptors in systemic autoimmune disease. Nat. Rev. Immunol. 6, 823-835. (doi:10.1038/nri1957)
-
(2006)
Nat. Rev. Immunol
, vol.6
, pp. 823-835
-
-
Marshak-Rothstein, A.1
-
126
-
-
0342939538
-
Natural antibodies with the T15 idiotype may act in atherosclerosis, apoptotic clearance, and protective immunity
-
Shaw PX, Horkko S, Chang MK, Curtiss LK, Palinski W, Silverman GJ, Witztum JL. 2000 Natural antibodies with the T15 idiotype may act in atherosclerosis, apoptotic clearance, and protective immunity. J. Clin. Invest. 105, 1731-1740. (doi:10. 1172/JCI8472)
-
(2000)
J. Clin. Invest
, vol.105
, pp. 1731-1740
-
-
Shaw, P.X.1
Horkko, S.2
Chang, M.K.3
Curtiss, L.K.4
Palinski, W.5
Silverman, G.J.6
Witztum, J.L.7
-
127
-
-
0014859086
-
Common individual antigenic determinants in five of eight BALB-c IgA myeloma proteins that bind phosphoryl choline
-
Potter M, Lieberman R. 1970 Common individual antigenic determinants in five of eight BALB-c IgA myeloma proteins that bind phosphoryl choline. J. Exp. Med. 132, 737-751. (doi:10.1084/jem.132.4.737)
-
(1970)
J. Exp. Med
, vol.132
, pp. 737-751
-
-
Potter, M.1
Lieberman, R.2
-
128
-
-
0033136298
-
Increased junctional diversity in fetal B cells results in a loss of protective anti-phosphorylcholine antibodies in adult mice
-
Benedict CL, Kearney JF. 1999 Increased junctional diversity in fetal B cells results in a loss of protective anti-phosphorylcholine antibodies in adult mice. Immunity 10, 607-617. (doi:10.1016/S1074- 7613(00)80060-6)
-
(1999)
Immunity
, vol.10
, pp. 607-617
-
-
Benedict, C.L.1
Kearney, J.F.2
-
129
-
-
0026756243
-
Structural aspects of recognition motifs contributing to autoimmune responses
-
Kieber-Emmons T. 1992 Structural aspects of recognition motifs contributing to autoimmune responses. DNA Cell Biol. 11, 199-206. (doi:10. 1089/dna.1992.11.199)
-
(1992)
DNA Cell Biol
, vol.11
, pp. 199-206
-
-
Kieber-Emmons, T.1
-
130
-
-
0023180926
-
Idiotypic self binding of a dominant germline idiotype (T15). Autobody activity is affected by antibody valency
-
Kang CY, Cheng HL, Rudikoff S, Kohler H. 1987 Idiotypic self binding of a dominant germline idiotype (T15). Autobody activity is affected by antibody valency. J. Exp. Med. 165, 1332-1343. (doi:10.1084/jem.165.5.1332)
-
(1987)
J. Exp. Med
, vol.165
, pp. 1332-1343
-
-
Kang, C.Y.1
Cheng, H.L.2
Rudikoff, S.3
Kohler, H.4
-
131
-
-
70249140955
-
Regulation of dendritic cells and macrophages by an anti-apoptotic cell natural antibody that suppresses TLR responses and inhibits inflammatory arthritis
-
Chen Y et al. 2009 Regulation of dendritic cells and macrophages by an anti-apoptotic cell natural antibody that suppresses TLR responses and inhibits inflammatory arthritis. J. Immunol. 183, 1346-1359. (doi:10.4049/jimmunol.0900948)
-
(2009)
J. Immunol
, vol.183
, pp. 1346-1359
-
-
Chen, Y.1
-
132
-
-
84860324057
-
Expression of natural autoantibodies in MRLlpr mice protects from lupus nephritis and improves survival
-
Mannoor K, Matejuk A, Xu Y, Beardall M, Chen C. 2012 Expression of natural autoantibodies in MRLlpr mice protects from lupus nephritis and improves survival. J. Immunol. 188, 3628-3638. (doi:10. 4049/jimmunol.1102859)
-
(2012)
J. Immunol
, vol.188
, pp. 3628-3638
-
-
Mannoor, K.1
Matejuk, A.2
Xu, Y.3
Beardall, M.4
Chen, C.5
-
133
-
-
0035923534
-
Structural basis for autoantibody recognition of phosphatidylserine-b2 glycoprotein I and apoptotic cells
-
Cocca BA, Seal SN, D'Agnillo P, Mueller YM, Katsikis PD, Rauch J, Weigert M, Radic MZ. 2001 Structural basis for autoantibody recognition of phosphatidylserine-b2 glycoprotein I and apoptotic cells. Proc. Natl Acad. Sci. USA 98, 13 826-13 831. (doi:10.1073/pnas.241510698)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13 826-13 831
-
-
Cocca, B.A.1
Seal, S.N.2
D'Agnillo, P.3
Mueller, Y.M.4
Katsikis, P.D.5
Rauch, J.6
Weigert, M.7
Radic, M.Z.8
-
134
-
-
0031849291
-
The role of phosphatidylserine in recognition of apoptotic cells by phagocytes
-
Fadok VA, Bratton DL, Frasch SC, Warner ML, Henson PM. 1998 The role of phosphatidylserine in recognition of apoptotic cells by phagocytes. Cell Death Differ. 5, 551-562. (doi:10.1038/sj.cdd. 4400404)
-
(1998)
Cell Death Differ
, vol.5
, pp. 551-562
-
-
Fadok, V.A.1
Bratton, D.L.2
Frasch, S.C.3
Warner, M.L.4
Henson, P.M.5
-
135
-
-
73349126428
-
Taking advantage: High-affinity B cells in the germinal center have lower death rates, but similar rates of division, compared to low-affinity cells
-
Anderson SM, Khalil A, Uduman M, Hershberg U, Louzoun Y, Haberman AM, Kleinstein SH, Shlomchik MJ. 2009 Taking advantage: high-affinity B cells in the germinal center have lower death rates, but similar rates of division, compared to low-affinity cells. J. Immunol. 183, 7314-7325. (doi:10.4049/ jimmunol.0902452)
-
(2009)
J. Immunol
, vol.183
, pp. 7314-7325
-
-
Anderson, S.M.1
Khalil, A.2
Uduman, M.3
Hershberg, U.4
Louzoun, Y.5
Haberman, A.M.6
Kleinstein, S.H.7
Shlomchik, M.J.8
-
136
-
-
0014935646
-
Natural selection and the concept of a protein space
-
Smith JM. 1970 Natural selection and the concept of a protein space. Nature 225, 563-564. (doi:10. 1038/225563a0)
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Smith, J.M.1
-
137
-
-
55949095006
-
How the thymus designs antigen-specific and self-tolerant T cell receptor sequences
-
Kosmrlj A, Jha AK, Huseby ES, Kardar M, Chakraborty AK. 2008 How the thymus designs antigen-specific and self-tolerant T cell receptor sequences. Proc. Natl Acad. Sci. USA 105, 16 671- 16 676. (doi:10.1073/pnas.0808081105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 16 671-16 676
-
-
Kosmrlj, A.1
Jha, A.K.2
Huseby, E.S.3
Kardar, M.4
Chakraborty, A.K.5
-
138
-
-
84891825898
-
Large-scale analysis of somatic hypermutations in antibodies reveals which structural regions, positions and amino acids are modified to improve affinity
-
Burkovitz A, Sela-Culang I, Ofran Y. 2014 Large-scale analysis of somatic hypermutations in antibodies reveals which structural regions, positions and amino acids are modified to improve affinity. FEBS J. 281, 306-319. (doi:10.1111/febs.12597)
-
(2014)
FEBS J
, vol.281
, pp. 306-319
-
-
Burkovitz, A.1
Sela-Culang, I.2
Ofran, Y.3
|