메뉴 건너뛰기




Volumn 109, Issue 40, 2012, Pages 16161-16166

Statistical inference of the generation probability of T-cell receptors from sequence repertoires

Author keywords

Convergent recombination; Expectation maximization; Insertion deletion profiles; Palindromic nucleotides

Indexed keywords

CELL DNA; T LYMPHOCYTE RECEPTOR;

EID: 84867095375     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1212755109     Document Type: Article
Times cited : (241)

References (24)
  • 2
    • 70349648171 scopus 로고    scopus 로고
    • Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
    • Freeman JD, Warren RL, Webb JR, Nelson BH, Holt RA (2009) Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. Genome Res 19:1817-1824.
    • (2009) Genome Res , vol.19 , pp. 1817-1824
    • Freeman, J.D.1    Warren, R.L.2    Webb, J.R.3    Nelson, B.H.4    Holt, R.A.5
  • 3
    • 65649122270 scopus 로고    scopus 로고
    • High-throughput sequencing of the zebrafish antibody repertoire
    • Weinstein JA, et al. (2009) High-throughput sequencing of the zebrafish antibody repertoire. Science 324:807-810.
    • (2009) Science , vol.324 , pp. 807-810
    • Weinstein, J.A.1
  • 4
    • 77950541195 scopus 로고    scopus 로고
    • Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells
    • Robins HS, et al. (2009) Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. Blood 114:4099-4107.
    • (2009) Blood , vol.114 , pp. 4099-4107
    • Robins, H.S.1
  • 5
    • 77956460339 scopus 로고    scopus 로고
    • Overlap and effective size of the human CD8+ T-cell repertoire
    • Robins HS, et al. (2010) Overlap and effective size of the human CD8+ T-cell repertoire. Sci Transl Med 2:47ra64.
    • (2010) Sci Transl Med , vol.2
    • Robins, H.S.1
  • 6
    • 80355122714 scopus 로고    scopus 로고
    • V (D) J recombination: Mechanisms of initiation
    • Schatz DG, Swanson PC (2011) V (D) J recombination: Mechanisms of initiation. Annu Rev Genet 45:167-202.
    • (2011) Annu Rev Genet , vol.45 , pp. 167-202
    • Schatz, D.G.1    Swanson, P.C.2
  • 8
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber MR (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79:181-211.
    • (2010) Annu Rev Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 9
    • 77955331318 scopus 로고    scopus 로고
    • SnapShot:Nonhomologous DNA end joining (NHEJ)
    • Lieber MR, Wilson TE (2010) SnapShot:Nonhomologous DNA end joining (NHEJ). Cell 142:496-496.e1.
    • (2010) Cell , vol.142
    • Lieber, M.R.1    Wilson, T.E.2
  • 10
    • 0024791338 scopus 로고
    • Junctional sequences of T cell receptor gammadelta genes: Implications for gammadelta T cell lineages and for a novel intermediate of V-(D)-J joining
    • DOI 10.1016/0092-8674(89)90609-0
    • Lafaille JJ, DeCloux A, Bonneville M, Takagaki Y, Tonegawa S (1989) Junctional sequences of T cell receptor gamma delta genes: Implications for gamma delta T cell lineages and for a novel intermediate of V-(D)-J joining. Cell 59:859-870. (Pubitemid 20022376)
    • (1989) Cell , vol.59 , Issue.5 , pp. 859-870
    • Lafaille, J.J.1    DeCloux, A.2    Bonneville, M.3    Takagaki, Y.4    Tonegawa, S.5
  • 12
    • 79953820582 scopus 로고    scopus 로고
    • Genomic screening by 454 pyrosequencing identifies a new human IGHV gene and sixteen other new IGHV allelic variants
    • Wang Y, et al. (2011) Genomic screening by 454 pyrosequencing identifies a new human IGHV gene and sixteen other new IGHV allelic variants. Immunogenetics 63:259-265.
    • (2011) Immunogenetics , vol.63 , pp. 259-265
    • Wang, Y.1
  • 14
    • 0033679109 scopus 로고    scopus 로고
    • Junctional biases in the naive TCR repertoire control the CTL response to an immunodominant determinant of HSV-1
    • Wallace ME, et al. (2000) Junctional biases in the naive TCR repertoire control the CTL response to an immunodominant determinant of HSV-1. Immunity 12:547-556.
    • (2000) Immunity , vol.12 , pp. 547-556
    • Wallace, M.E.1
  • 15
    • 0029655319 scopus 로고    scopus 로고
    • Mechanistic constraints on diversity in human V(D)J recombination
    • Gauss GH, Lieber MR (1996) Mechanistic constraints on diversity in human V(D)J recombination. Mol Cell Biol 16:258-269. (Pubitemid 126506971)
    • (1996) Molecular and Cellular Biology , vol.16 , Issue.1 , pp. 258-269
    • Gauss, G.H.1    Lieber, M.R.2
  • 16
    • 0033615678 scopus 로고    scopus 로고
    • A direct estimate of the human alphabeta T cell receptor diversity
    • Arstila TP, et al. (1999) A direct estimate of the human alphabeta T cell receptor diversity. Science 286:958-961.
    • (1999) Science , vol.286 , pp. 958-961
    • Arstila, T.P.1
  • 17
    • 33845605046 scopus 로고    scopus 로고
    • Lymphocyte numbers and subsets in the human blood. Do they mirror the situation in all organs?
    • DOI 10.1016/j.imlet.2006.10.009, PII S0165247806002380
    • Blum K, Pabst R (2007) Lymphocyte numbers and subsets in the human blood: Do they mirror the situation in all organs? Immunol Lett 108:45-51. (Pubitemid 44959060)
    • (2007) Immunology Letters , vol.108 , Issue.1 , pp. 45-51
    • Blum, K.S.1    Pabst, R.2
  • 18
    • 0032171644 scopus 로고    scopus 로고
    • A very high level of crossreactivity is an essential feature of the T-cell receptor
    • Mason D (1998) A very high level of crossreactivity is an essential feature of the T-cell receptor. Immunol Today 19:395-404.
    • (1998) Immunol Today , vol.19 , pp. 395-404
    • Mason, D.1
  • 20
    • 78650596159 scopus 로고    scopus 로고
    • Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire
    • Quigley MF, et al. (2010) Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire. Proc Natl Acad Sci USA 107:19414-19419.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 19414-19419
    • Quigley, M.F.1
  • 21
    • 79955022207 scopus 로고    scopus 로고
    • A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing
    • Venturi V, et al. (2011) A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing. J Immunol 186:4285-4294.
    • (2011) J Immunol , vol.186 , pp. 4285-4294
    • Venturi, V.1
  • 24
    • 9644277298 scopus 로고    scopus 로고
    • IMGT/JunctionAnalysis: The first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONs
    • DOI 10.1093/bioinformatics/bth945
    • Monod MY, Giudicelli V, Chaume D, Lefranc MP (2004) IMGT/Junction analysis: The first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J junctions. Bioinformatics 20:i379-i385. (Pubitemid 41296713)
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Monod, M.Y.1    Giudicelli, V.2    Chaume, D.3    Lefranc, M.-P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.