메뉴 건너뛰기




Volumn 6, Issue MAY, 2015, Pages 1-15

RNA around the clock – Regulation at the RNA level in biological timing

Author keywords

Circadian oscillation; Post transcriptional regulation; RNA binding protein

Indexed keywords

ARABIDOPSIS THALIANA;

EID: 84934873374     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00311     Document Type: Review
Times cited : (33)

References (170)
  • 1
    • 0037006795 scopus 로고    scopus 로고
    • Circardian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus
    • Akhtar, R. A., Reddy, A. B., Maywood, E. S., Clayton, J. D., King, V. M., Smith, A. G., et al. (2002). Circardian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus. Curr. Biol. 12, 540-550. doi: 10. 1016/S0960-9822(02)00759-5.
    • (2002) Curr. Biol , vol.12 , pp. 540-550
    • Akhtar, R.A.1    Reddy, A.B.2    Maywood, E.S.3    Clayton, J.D.4    King, V.M.5    Smith, A.G.6
  • 2
    • 0035800467 scopus 로고    scopus 로고
    • Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
    • Alabadi, D., Oyama, T., Yanovsky, M. J., Harmon, F. G., Mas, P., and Kay, S. A. (2001). Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293, 880-883. doi: 10. 1126/science. 1061320.
    • (2001) Science , vol.293 , pp. 880-883
    • Alabadi, D.1    Oyama, T.2    Yanovsky, M.J.3    Harmon, F.G.4    Mas, P.5    Kay, S.A.6
  • 3
    • 33745817833 scopus 로고    scopus 로고
    • UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
    • Arciga-Reyes, L., Wootton, L., Kieffer, M., and Davies, B. (2006). UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47, 480-489. doi: 10. 1111/j. 1365-313X. 2006. 02802. x.
    • (2006) Plant J , vol.47 , pp. 480-489
    • Arciga-Reyes, L.1    Wootton, L.2    Kieffer, M.3    Davies, B.4
  • 4
    • 84866074972 scopus 로고    scopus 로고
    • Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
    • Baerenfaller, K., Massonnet, C., Walsh, S., Baginsky, S., Buhlmann, P., Hennig, L., et al. (2012). Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol. Syst. Biol. 8: 606. doi: 10. 1038/msb. 2012. 39.
    • (2012) Mol. Syst. Biol , vol.8
    • Baerenfaller, K.1    Massonnet, C.2    Walsh, S.3    Baginsky, S.4    Buhlmann, P.5    Hennig, L.6
  • 5
    • 0034488922 scopus 로고    scopus 로고
    • All in good time: TheArabidopsis circadian clock
    • Barak, S., Tobin, E. M., Green, R. M., Andronis, C., and Sugano, S. (2000). All in good time: theArabidopsis circadian clock. Trends Plant Sci. 5, 517-522. doi: 10. 1016/S1360-1385(00)01785-4.
    • (2000) Trends Plant Sci , vol.5 , pp. 517-522
    • Barak, S.1    Tobin, E.M.2    Green, R.M.3    Andronis, C.4    Sugano, S.5
  • 6
    • 78049455373 scopus 로고    scopus 로고
    • Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR Proteins) in plants
    • Barta, A., Kalyna, M., and Reddy, A. S. (2010). Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR Proteins) in plants. Plant Cell22, 2926-2929. doi: 10. 1105/tpc. 110. 078352.
    • (2010) Plant Cell , vol.22 , pp. 2926-2929
    • Barta, A.1    Kalyna, M.2    Reddy, A.S.3
  • 8
    • 84891485596 scopus 로고    scopus 로고
    • Adenosine methylation in Arabidopsis mRNA is associated with the 3' end and reduced levels cause developmental defects
    • Bodi, Z., Zhong, S., Mehra, S., Song, J., Li, H., Graham, N., et al. (2012). Adenosine methylation in Arabidopsis mRNA is associated with the 3' end and reduced levels cause developmental defects. Front. Plant Sci. 3: 48. doi: 10. 3389/fpls. 2012. 00048.
    • (2012) Front. Plant Sci , vol.3
    • Bodi, Z.1    Zhong, S.2    Mehra, S.3    Song, J.4    Li, H.5    Graham, N.6
  • 10
    • 84877945444 scopus 로고    scopus 로고
    • On the physiological significance of alternative splicing events in higher plants
    • Carvalho, R., Feijao, C., and Duque, P. (2012). On the physiological significance of alternative splicing events in higher plants. Protoplasma 250, 639-650. doi: 10. 1007/s00709-012-0448-9.
    • (2012) Protoplasma , vol.250 , pp. 639-650
    • Carvalho, R.1    Feijao, C.2    Duque, P.3
  • 11
    • 84897128298 scopus 로고    scopus 로고
    • The noncoding RNA revolution-trashing old rules to forge new ones
    • Cech, T. R., and Steitz, J. A. (2014). The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157, 77-94. doi: 10. 1016/j. cell. 2014.
    • (2014) Cell , vol.157 , pp. 77-94
    • Cech, T.R.1    Steitz, J.A.2
  • 12
    • 0031934077 scopus 로고    scopus 로고
    • Biological effects of inhibitors of S-adenosylhomocysteine hydrolase
    • Chiang, P. K. (1998). Biological effects of inhibitors of S-adenosylhomocysteine hydrolase. Pharmacol. Ther. 77, 115-134. doi: 10. 1016/S0163-7258(97)00089-2.
    • (1998) Pharmacol. Ther , vol.77 , pp. 115-134
    • Chiang, P.K.1
  • 13
    • 51749110466 scopus 로고    scopus 로고
    • Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
    • Covington, M. F., Maloof, J. N., Straume, M., Kay, S. A., and Harmer, S. L. (2008). Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol. 9: R130. doi: 10. 1186/gb-2008-9-8-r130.
    • (2008) Genome Biol , vol.9
    • Covington, M.F.1    Maloof, J.N.2    Straume, M.3    Kay, S.A.4    Harmer, S.L.5
  • 14
    • 2542422771 scopus 로고    scopus 로고
    • Circadian clocks and natural antisense RNA
    • Crosthwaite, S. K. (2004). Circadian clocks and natural antisense RNA. FEBS Lett. 567, 49-54. doi: 10. 1016/j. febslet. 2004. 04. 073.
    • (2004) FEBS Lett , vol.567 , pp. 49-54
    • Crosthwaite, S.K.1
  • 15
    • 84899005362 scopus 로고    scopus 로고
    • Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis
    • Cui, Z., Xu, Q., and Wang, X. (2014). Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis. J. Exp. Bot. 65, 1973-1980. doi: 10. 1093/jxb/eru085.
    • (2014) J. Exp. Bot , vol.65 , pp. 1973-1980
    • Cui, Z.1    Xu, Q.2    Wang, X.3
  • 16
    • 84875429298 scopus 로고    scopus 로고
    • Reflections on the history of pre-mRNA processing and highlights of current knowledge: A unified picture
    • Darnell, J. E. (2013). Reflections on the history of pre-mRNA processing and highlights of current knowledge: a unified picture. RNA 19, 443-460. doi: 10. 1261/rna. 038596. 113.
    • (2013) RNA , vol.19 , pp. 443-460
    • Darnell, J.E.1
  • 17
    • 84868588250 scopus 로고    scopus 로고
    • Novel interaction of two clock-relevant RNA-binding proteins C3 and XRN1 in Chlamydomonas reinhardtii
    • Dathe, H., Prager, K., and Mittag, M. (2012). Novel interaction of two clock-relevant RNA-binding proteins C3 and XRN1 in Chlamydomonas reinhardtii. FEBS Lett. 586, 3969-3973. doi: 10. 1016/j. febslet. 2012. 09. 046.
    • (2012) FEBS Lett , vol.586 , pp. 3969-3973
    • Dathe, H.1    Prager, K.2    Mittag, M.3
  • 18
    • 77953911604 scopus 로고    scopus 로고
    • Plant development goes like clockwork
    • de Montaigu, A., Toth, R., and Coupland, G. (2010). Plant development goes like clockwork. Trends Genet. 26, 296-306. doi: 10. 1016/j. tig. 2010. 04. 003.
    • (2010) Trends Genet , vol.26 , pp. 296-306
    • de Montaigu, A.1    Toth, R.2    Coupland, G.3
  • 19
    • 78650488766 scopus 로고    scopus 로고
    • Arginine methylation mediated by theArabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing
    • Deng, X., Gu, L., Liu, C., Lu, T., Lu, F., Lu, Z., et al. (2010). Arginine methylation mediated by theArabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc. Natl. Acad. Sci. U. S. A. 107, 19114-19119. doi: 10. 1073/pnas. 1009669107.
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 19114-19119
    • Deng, X.1    Gu, L.2    Liu, C.3    Lu, T.4    Lu, F.5    Lu, Z.6
  • 20
    • 77951889295 scopus 로고    scopus 로고
    • The mammalian circadian timing system: Organization and coordination of central and peripheral clocks
    • Dibner, C., Schibler, U., and Albrecht, U. (2010). The mammalian circadian timing system: organization and coordination of central and peripheral clocks. Annu. Rev. Physiol. 72, 517-549. doi: 10. 1146/annurev-physiol-021909-135821.
    • (2010) Annu. Rev. Physiol , vol.72 , pp. 517-549
    • Dibner, C.1    Schibler, U.2    Albrecht, U.3
  • 21
    • 79151483729 scopus 로고    scopus 로고
    • Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis
    • Dixon, L. E., Knox, K., Kozma-Bognar, L., Southern, M. M., Pokhilko, A., and Millar, A. J. (2011). Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis. Curr. Biol. 25, 120-125. doi: 10. 1016/j. cub. 2010. 12. 013.
    • (2011) Curr. Biol , vol.25 , pp. 120-125
    • Dixon, L.E.1    Knox, K.2    Kozma-Bognar, L.3    Southern, M.M.4    Pokhilko, A.5    Millar, A.J.6
  • 22
    • 0038797063 scopus 로고    scopus 로고
    • The circadian Clock. A plant's best friend in a spinning world
    • Eriksson, M. E., and Millar, A. J. (2003). The circadian Clock. A plant's best friend in a spinning world. Plant Physiol. 132, 732-738. doi: 10. 1104/pp. 103. 022343.
    • (2003) Plant Physiol , vol.132 , pp. 732-738
    • Eriksson, M.E.1    Millar, A.J.2
  • 23
    • 0036834175 scopus 로고    scopus 로고
    • Photoreceptors in Arabidopsis thaliana: Light perception, signal transduction and entrainment of the endogenous clock
    • Fankhauser, C., and Staiger, D. (2002). Photoreceptors in Arabidopsis thaliana: light perception, signal transduction and entrainment of the endogenous clock. Planta 216, 1-16. doi: 10. 1007/s00425-002-0831-4.
    • (2002) Planta , vol.216 , pp. 1-16
    • Fankhauser, C.1    Staiger, D.2
  • 24
    • 84925186016 scopus 로고    scopus 로고
    • Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts Arabidopsis
    • [Epub ahead of print]
    • Filichkin, S. A., Cumbie, J. S., Dharmawadhana, J. P., Jaiswal, P., Chang, J. H., Palusa, S. G., et al. (2015). Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis. Mol. Plant. doi: 10. 1093/mp/ssu130 [Epub ahead of print].
    • (2015) Mol. Plant
    • Filichkin, S.A.1    Cumbie, J.S.2    Dharmawadhana, J.P.3    Jaiswal, P.4    Chang, J.H.5    Palusa, S.G.6
  • 25
    • 84863089087 scopus 로고    scopus 로고
    • Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes
    • Filichkin, S., and Mockler, T. (2012). Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes. Biol. Direct. 7: 20. doi: 10. 1186/1745-6150-7-20.
    • (2012) Biol. Direct , vol.7
    • Filichkin, S.1    Mockler, T.2
  • 26
    • 74949084336 scopus 로고    scopus 로고
    • Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    • Filichkin, S. A., Priest, H. D., Givan, S. A., Shen, R., Bryant, D. W., Fox, S. E., et al. (2010). Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 20, 45-58. doi: 10. 1101/gr. 093302. 109.
    • (2010) Genome Res , vol.20 , pp. 45-58
    • Filichkin, S.A.1    Priest, H.D.2    Givan, S.A.3    Shen, R.4    Bryant, D.W.5    Fox, S.E.6
  • 27
    • 53149108244 scopus 로고    scopus 로고
    • Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins
    • Fujiwara, S., Wang, L., Han, L., Suh, S. S., Salome, P. A., McClung, C. R., et al. (2008). Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins. J. Biol. Chem. 283, 23073-23083. doi: 10. 1074/jbc. M803471200.
    • (2008) J. Biol. Chem , vol.283 , pp. 23073-23083
    • Fujiwara, S.1    Wang, L.2    Han, L.3    Suh, S.S.4    Salome, P.A.5    McClung, C.R.6
  • 28
    • 84887875528 scopus 로고    scopus 로고
    • RNA-Methylation-dependent RNA processing controls the speed of the circadian clock
    • Fustin, J.-M., Doi, M., Yamaguchi, Y., Hida, H., Nishimura, S., Yoshida, M., et al. (2013). RNA-Methylation-dependent RNA processing controls the speed of the circadian clock. Cell 155, 793-806. doi: 10. 1016/j. cell. 2013. 10. 026.
    • (2013) Cell , vol.155 , pp. 793-806
    • Fustin, J.-M.1    Doi, M.2    Yamaguchi, Y.3    Hida, H.4    Nishimura, S.5    Yoshida, M.6
  • 29
    • 58649111987 scopus 로고    scopus 로고
    • Prp45 affects Prp22 partition in spliceosomal complexes and splicing efficiency of non-consensus substrates
    • Gahura, O., Abrhámová, K., Skružný, M., Valentová, A., Munzarová, V., Folk, P., et al. (2009). Prp45 affects Prp22 partition in spliceosomal complexes and splicing efficiency of non-consensus substrates. J. Cell. Biochem. 106, 139-151. doi: 10. 1002/jcb. 21989.
    • (2009) J. Cell. Biochem , vol.106 , pp. 139-151
    • Gahura, O.1    Abrhámová, K.2    Skružný, M.3    Valentová, A.4    Munzarová, V.5    Folk, P.6
  • 31
    • 84907703051 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense
    • Gloggnitzer, J., Akimcheva, S., Srinivasan, A., Kusenda, B., Riehs, N., Stampfl, H., et al. (2014). Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense. Cell Host Microbe 16, 376-390. doi: 10. 1016/j. chom. 2014. 08. 010.
    • (2014) Cell Host Microbe , vol.16 , pp. 376-390
    • Gloggnitzer, J.1    Akimcheva, S.2    Srinivasan, A.3    Kusenda, B.4    Riehs, N.5    Stampfl, H.6
  • 32
    • 84880245179 scopus 로고    scopus 로고
    • Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation
    • Golisz, A., Sikorski, P. J., Kruszka, K., and Kufel, J. (2013). Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation. Nucleic Acids Res. 41, 6232-6249. doi: 10. 1093/nar/gkt296.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6232-6249
    • Golisz, A.1    Sikorski, P.J.2    Kruszka, K.3    Kufel, J.4
  • 33
    • 70149093861 scopus 로고    scopus 로고
    • The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop
    • Guo, J., Cheng, P., Yuan, H., and Liu, Y. (2009). The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop. Cell 138, 1236-1246. doi: 10. 1016/j. cell. 2009. 06. 043.
    • (2009) Cell , vol.138 , pp. 1236-1246
    • Guo, J.1    Cheng, P.2    Yuan, H.3    Liu, Y.4
  • 34
    • 0037143757 scopus 로고    scopus 로고
    • Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch-and specific clock-controlled genes
    • Gutierrez, R. A., Ewing, R. M., Cherry, J. M., and Green, P. J. (2002). Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch-and specific clock-controlled genes. Proc. Natl. Acad. Sci. U. S. A. 99, 11513-11518. doi: 10. 1073/pnas. 152204099.
    • (2002) Proc. Natl. Acad. Sci. U.S.A , vol.99 , pp. 11513-11518
    • Gutierrez, R.A.1    Ewing, R.M.2    Cherry, J.M.3    Green, P.J.4
  • 35
    • 84892811784 scopus 로고    scopus 로고
    • Salicylic acid-dependent and-independent impact of an RNA-binding protein on plant immunity
    • Hackmann, C., Korneli, C., Kutyniok, M., Köster, T., Wiedenlübbert, M., Müller, C., et al. (2014). Salicylic acid-dependent and-independent impact of an RNA-binding protein on plant immunity. Plant Cell Environ. 37, 696-706. doi: 10. 1111/pce. 12188.
    • (2014) Plant Cell Environ , vol.37 , pp. 696-706
    • Hackmann, C.1    Korneli, C.2    Kutyniok, M.3    Köster, T.4    Wiedenlübbert, M.5    Müller, C.6
  • 36
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • Harmer, S. L. (2009). The circadian system in higher plants. Annu. Rev. Plant Biol. 60, 357-377. doi: 10. 1146/annurev. arplant. 043008. 092054.
    • (2009) Annu. Rev. Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 37
    • 4544255715 scopus 로고    scopus 로고
    • Posttranscriptional and posttranslational regulation of clock genes
    • Harms, E., Kivimae, S., Young, M. W., and Saez, L. (2004). Posttranscriptional and posttranslational regulation of clock genes. J. Biol. Rhythms 19, 361-373. doi: 10. 1177/0748730404268111.
    • (2004) J. Biol. Rhythms , vol.19 , pp. 361-373
    • Harms, E.1    Kivimae, S.2    Young, M.W.3    Saez, L.4
  • 38
    • 62349089764 scopus 로고    scopus 로고
    • Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
    • Hazen, S. P., Naef, F., Quisel, T., Gendron, J. M., Chen, H., Ecker, J. R., et al. (2009). Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol. 10: R17. doi: 10. 1186/gb-2009-10-2-r17.
    • (2009) Genome Biol , vol.10
    • Hazen, S.P.1    Naef, F.2    Quisel, T.3    Gendron, J.M.4    Chen, H.5    Ecker, J.R.6
  • 39
    • 79151483227 scopus 로고    scopus 로고
    • LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock
    • Helfer, A., Nusinow, D. A., Chow, B. Y., Gehrke, A. R., Bulyk, M. L., and Kay, S. A. (2011). LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr. Biol. 21, 126-133. doi: 10. 1016/j. cub. 2010. 12. 021.
    • (2011) Curr. Biol , vol.21 , pp. 126-133
    • Helfer, A.1    Nusinow, D.A.2    Chow, B.Y.3    Gehrke, A.R.4    Bulyk, M.L.5    Kay, S.A.6
  • 40
    • 84879185229 scopus 로고    scopus 로고
    • Chromatin remodeling and alternative splicing: Pre-and post-transcriptional regulation of the Arabidopsis circadian clock
    • Henriques, R., and Mas, P. (2013). Chromatin remodeling and alternative splicing: pre-and post-transcriptional regulation of the Arabidopsis circadian clock. Semi. Cell Dev. Biol. 24, 399-406. doi: 10. 1016/j. semcdb. 2013. 02. 009.
    • (2013) Semi. Cell Dev. Biol , vol.24 , pp. 399-406
    • Henriques, R.1    Mas, P.2
  • 41
    • 84859045922 scopus 로고    scopus 로고
    • Time for a nuclear meeting: Protein trafficking and chromatin dynamics intersect in the plant circadian system
    • Herrero, E., and Davis, S. J. (2012). Time for a nuclear meeting: protein trafficking and chromatin dynamics intersect in the plant circadian system. Mol. Plant 5, 554-565. doi: 10. 1093/mp/sss010.
    • (2012) Mol. Plant , vol.5 , pp. 554-565
    • Herrero, E.1    Davis, S.J.2
  • 42
    • 84859043500 scopus 로고    scopus 로고
    • EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsiscircadian clock
    • Herrero, E., Kolmos, E., Bujdoso, N., Yuan, Y., Wang, M., Berns, M. C., et al. (2012). EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsiscircadian clock. Plant Cell 24, 428-443. doi: 10. 1105/tpc. 111. 093807.
    • (2012) Plant Cell , vol.24 , pp. 428-443
    • Herrero, E.1    Kolmos, E.2    Bujdoso, N.3    Yuan, Y.4    Wang, M.5    Berns, M.C.6
  • 43
    • 78650446132 scopus 로고    scopus 로고
    • Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana
    • Hong, S., Song, H. R., Lutz, K., Kerstetter, R. A., Michael, T. P., and McClung, C. R. (2010). Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 107, 21211-21216. doi: 10. 1073/pnas. 1011987107.
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 21211-21216
    • Hong, S.1    Song, H.R.2    Lutz, K.3    Kerstetter, R.A.4    Michael, T.P.5    McClung, C.R.6
  • 44
    • 60149090021 scopus 로고    scopus 로고
    • The many pathways of RNA degradation
    • Houseley, J., and Tollervey, D. (2009). The many pathways of RNA degradation. Cell 136, 763-776. doi: 10. 1016/j. cell. 2009. 01. 019.
    • (2009) Cell , vol.136 , pp. 763-776
    • Houseley, J.1    Tollervey, D.2
  • 45
    • 84897418780 scopus 로고    scopus 로고
    • Wheels within wheels: The plant circadian system
    • Hsu, P. Y., and Harmer, S. L. (2014). Wheels within wheels: the plant circadian system. Trends Plant Sci. 19, 240-249. doi: 10. 1016/j. tplants. 2013. 11. 007.
    • (2014) Trends Plant Sci , vol.19 , pp. 240-249
    • Hsu, P.Y.1    Harmer, S.L.2
  • 46
    • 84859508042 scopus 로고    scopus 로고
    • Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator
    • Huang, W., Perez-Garcia, P., Pokhilko, A., Millar, A. J., Antoshechkin, I., Riechmann, J. L., et al. (2012). Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science 336, 75-79. doi: 10. 1126/science. 1219075.
    • (2012) Science , vol.336 , pp. 75-79
    • Huang, W.1    Perez-Garcia, P.2    Pokhilko, A.3    Millar, A.J.4    Antoshechkin, I.5    Riechmann, J.L.6
  • 47
    • 84914140231 scopus 로고    scopus 로고
    • Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential
    • Hurley, J. M., Dasgupta, A., Emerson, J. M., Zhou, X., Ringelberg, C. S., Knabe, N., et al. (2014). Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proc. Natl. Acad. Sci. U. S. A. 111, 16995-17002. doi: 10. 1073/pnas. 1418963111.
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 16995-17002
    • Hurley, J.M.1    Dasgupta, A.2    Emerson, J.M.3    Zhou, X.4    Ringelberg, C.S.5    Knabe, N.6
  • 48
    • 79951951353 scopus 로고    scopus 로고
    • Proteomic identification of rhythmic proteins in rice seedlings
    • Hwang, H. J., Cho, M.-H., Hahn, B.-S., Lim, H., Kwon, Y.-K., Hahn, T.-R., et al. (2011). Proteomic identification of rhythmic proteins in rice seedlings. Biochim. Biophys. Acta 1840, 470-479. doi: 10. 1016/j. bbapap. 2011. 01. 010.
    • (2011) Biochim. Biophys. Acta , vol.1840 , pp. 470-479
    • Hwang, H.J.1    Cho, M.-H.2    Hahn, B.-S.3    Lim, H.4    Kwon, Y.-K.5    Hahn, T.-R.6
  • 49
    • 49949105213 scopus 로고    scopus 로고
    • The multiple lives of NMD factors: Balancing roles in gene and genome regulation
    • Isken, O., and Maquat, L. E. (2008). The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat. Rev. Genet. 9, 699-712. doi: 10. 1038/nrg2402.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 699-712
    • Isken, O.1    Maquat, L.E.2
  • 50
    • 84860128193 scopus 로고    scopus 로고
    • Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes
    • James, A. B., Syed, N. H., Bordage, S., Marshall, J., Nimmo, G. A., Jenkins, G. I., et al. (2012). Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell 24, 961-981. doi: 10. 1105/tpc. 111. 093948.
    • (2012) Plant Cell , vol.24 , pp. 961-981
    • James, A.B.1    Syed, N.H.2    Bordage, S.3    Marshall, J.4    Nimmo, G.A.5    Jenkins, G.I.6
  • 51
    • 84870675720 scopus 로고    scopus 로고
    • Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 causes circadian clock defects
    • Jones, M. A., Williams, B. A., Mcnicol, J., Simpson, C. G., Brown, J. W. S., and Harmer, S. L. (2012). Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 causes circadian clock defects. Plant Cell 24, 4907-4916. doi: 10. 1105/tpc. 112. 104828.
    • (2012) Plant Cell , vol.24 , pp. 4907-4916
    • Jones, M.A.1    Williams, B.A.2    McNicol, J.3    Simpson, C.G.4    Brown, J.W.S.5    Harmer, S.L.6
  • 52
    • 84873872342 scopus 로고    scopus 로고
    • The circadian clock coordinates ribosome biogenesis
    • Jouffe, C., Cretenet, G., Symul, L., Martin, E., Atger, F., Naef, F., et al. (2013). The circadian clock coordinates ribosome biogenesis. PLoS Biol. 11: e1001455. doi: 10. 1371/journal. pbio. 1001455.
    • (2013) PLoS Biol , vol.11
    • Jouffe, C.1    Cretenet, G.2    Symul, L.3    Martin, E.4    Atger, F.5    Naef, F.6
  • 53
    • 48249086491 scopus 로고    scopus 로고
    • Biological clocks and the coordination theory of RNA operons and regulons
    • Keene, J. D. (2007). Biological clocks and the coordination theory of RNA operons and regulons. Cold. Spring Harb. Symp. Quant. Biol. 72, 157-165. doi: 10. 1101/sqb. 2007. 72. 013.
    • (2007) Cold. Spring Harb. Symp. Quant. Biol , vol.72 , pp. 157-165
    • Keene, J.D.1
  • 54
    • 35748946957 scopus 로고    scopus 로고
    • On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation
    • Kim, B.-H., Cai, X., Vaughn, J., and von Arnim, A. (2007a). On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation. Genome Biol. 8: R60. doi: 10. 1186/gb-2007-8-4-r60.
    • (2007) Genome Biol , vol.8
    • Kim, B.-H.1    Cai, X.2    Vaughn, J.3    von Arnim, A.4
  • 55
    • 33846907791 scopus 로고    scopus 로고
    • Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli
    • Kim, J. S., Park, S. J., Kwak, K. J., Kim, Y. O., Kim, J. Y., Song, J., et al. (2007b). Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. Nucleic Acids Res. 35, 506-516. doi: 10. 1093/nar/gkl1076.
    • (2007) Nucleic Acids Res , vol.35 , pp. 506-516
    • Kim, J.S.1    Park, S.J.2    Kwak, K.J.3    Kim, Y.O.4    Kim, J.Y.5    Song, J.6
  • 56
    • 84855566591 scopus 로고    scopus 로고
    • Long noncoding RNA: Unveiling hidden layer of gene regulatory networks
    • Kim, E.-D., and Sung, S. (2012). Long noncoding RNA: unveiling hidden layer of gene regulatory networks. Trends Plant Sci. 17, 16-21. doi: 10. 1016/j. tplants. 2011. 10. 00.
    • (2012) Trends Plant Sci , vol.17 , pp. 16-21
    • Kim, E.-D.1    Sung, S.2
  • 57
    • 47749089005 scopus 로고    scopus 로고
    • Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana
    • Kim, J. S., Jung, H. J., Lee, H. J., Kim, K. A., Goh, C. H., Woo, Y., et al. (2008). Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J. 55, 455-466. doi: 10. 1111/j. 1365-313X. 2008. 03518. x.
    • (2008) Plant J , vol.55 , pp. 455-466
    • Kim, J.S.1    Jung, H.J.2    Lee, H.J.3    Kim, K.A.4    Goh, C.H.5    Woo, Y.6
  • 58
    • 0037450767 scopus 로고    scopus 로고
    • Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY
    • Kim, J.-Y., Song, H.-R., Taylor, B. L., and Carré, I. A. (2003). Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY. EMBO J. 22, 935-944. doi: 10. 1093/emboj/cdg075.
    • (2003) EMBO J , vol.22 , pp. 935-944
    • Kim, J.-Y.1    Song, H.-R.2    Taylor, B.L.3    Carré, I.A.4
  • 59
    • 84924576180 scopus 로고    scopus 로고
    • Rhythmic control of mRNA stability modulates circadian amplitude of mouse period3 mRNA
    • Kim, S.-H., Lee, K.-H., Kim, D.-Y., Kwak, E., Kim, S., and Kim, K.-T. (2015). Rhythmic control of mRNA stability modulates circadian amplitude of mouse period3 mRNA. J. Neurochem. 132, 642-656. doi: 10. 1111/jnc. 13027.
    • (2015) J. Neurochem , vol.132 , pp. 642-656
    • Kim, S.-H.1    Lee, K.-H.2    Kim, D.-Y.3    Kwak, E.4    Kim, S.5    Kim, K.-T.6
  • 60
    • 84867667011 scopus 로고    scopus 로고
    • Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
    • Koike, N., Yoo, S.-H., Huang, H.-C., Kumar, V., Lee, C., Kim, T.-K., et al. (2012). Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 338, 349-354. doi: 10. 1126/science. 1226339.
    • (2012) Science , vol.338 , pp. 349-354
    • Koike, N.1    Yoo, S.-H.2    Huang, H.-C.3    Kumar, V.4    Lee, C.5    Kim, T.-K.6
  • 61
    • 77956197958 scopus 로고    scopus 로고
    • MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver
    • Kojima, S., Gatfield, D., Esau, C. C., and Green, C. B. (2010). MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver. PLoS ONE5: e11264. doi: 10. 1371/journal. pone. 0011264.
    • (2010) PLoS ONE , vol.5
    • Kojima, S.1    Gatfield, D.2    Esau, C.C.3    Green, C.B.4
  • 62
    • 84922468628 scopus 로고    scopus 로고
    • Circadian genomics reveal a role for post-transcriptional regulation in mammals
    • Kojima, S., and Green, C. B. (2014). Circadian genomics reveal a role for post-transcriptional regulation in mammals. Biochemistry 54, 124-133. doi: 10. 1021/bi500707c.
    • (2014) Biochemistry , vol.54 , pp. 124-133
    • Kojima, S.1    Green, C.B.2
  • 63
    • 33846907098 scopus 로고    scopus 로고
    • LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1
    • Kojima, S., Matsumoto, K., Hirose, M., Shimada, M., Nagano, M., Shigeyoshi, Y., et al. (2007). LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1. Proc. Natl. Acad. Sci. U. S. A. 104, 1859-1864. doi: 10. 1073/pnas. 0607567104.
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 1859-1864
    • Kojima, S.1    Matsumoto, K.2    Hirose, M.3    Shimada, M.4    Nagano, M.5    Shigeyoshi, Y.6
  • 64
    • 84871581540 scopus 로고    scopus 로고
    • Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression
    • Kojima, S., Sher-Chen, E. L., and Green, C. B. (2012). Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression. Genes Dev. 26, 2724-2736. doi: 10. 1101/gad. 208306. 112.
    • (2012) Genes Dev , vol.26 , pp. 2724-2736
    • Kojima, S.1    Sher-Chen, E.L.2    Green, C.B.3
  • 65
    • 79551506940 scopus 로고    scopus 로고
    • Post-transcriptional control of circadian rhythms
    • Kojima, S., Shingle, D. L., and Green, C. B. (2011). Post-transcriptional control of circadian rhythms. J. Cell Sci. 124, 311-320. doi: 10. 1242/jcs. 065771.
    • (2011) J. Cell Sci , vol.124 , pp. 311-320
    • Kojima, S.1    Shingle, D.L.2    Green, C.B.3
  • 66
    • 84861666408 scopus 로고    scopus 로고
    • The spliceosome-activating complex: Molecular mechanisms underlying the function of a pleiotropic regulator
    • Koncz, C., Dejong, F., Villacorta, N., Szakonyi, D., and Koncz, Z. (2012). The spliceosome-activating complex: molecular mechanisms underlying the function of a pleiotropic regulator. Front. Plant Sci. 3: 9. doi: 10. 3389/fpls. 2012. 00009.
    • (2012) Front. Plant Sci , vol.3
    • Koncz, C.1    Dejong, F.2    Villacorta, N.3    Szakonyi, D.4    Koncz, Z.5
  • 67
    • 84875444381 scopus 로고    scopus 로고
    • Alternative splicing: A pivotal step between eukaryotic transcription and translation
    • Kornblihtt, A. R., Schor, I. E., Allo, M., Dujardin, G., Petrillo, E., and Munoz, M. J. (2013). Alternative splicing: a pivotal step between eukaryotic transcription and translation. Nat. Rev. Mol. Cell Biol. 14, 153-165. doi: 10. 1038/nrm3525.
    • (2013) Nat. Rev. Mol. Cell Biol , vol.14 , pp. 153-165
    • Kornblihtt, A.R.1    Schor, I.E.2    Allo, M.3    Dujardin, G.4    Petrillo, E.5    Munoz, M.J.6
  • 68
    • 84922394305 scopus 로고    scopus 로고
    • The RIPper Case: Identification of RNA-binding protein targets by RNA immunoprecipitation
    • Köster, T., Haas, M., and Staiger, D. (2014a). The RIPper Case: identification of RNA-binding protein targets by RNA immunoprecipitation. Methods Mol. Biol. 1158, 107-121. doi: 10. 1007/978-1-4939-0700-7_7.
    • (2014) Methods Mol. Biol , vol.1158 , pp. 107-121
    • Köster, T.1    Haas, M.2    Staiger, D.3
  • 69
    • 84908314609 scopus 로고    scopus 로고
    • Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis
    • Köster, T., Meyer, K., Weinholdt, C., Smith, L. M., Lummer, M., Speth, C., et al. (2014b). Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic Acids Res. 42, 9925-9936. doi: 10. 1093/nar/gku716.
    • (2014) Nucleic Acids Res , vol.42 , pp. 9925-9936
    • Köster, T.1    Meyer, K.2    Weinholdt, C.3    Smith, L.M.4    Lummer, M.5    Speth, C.6
  • 70
    • 0242669950 scopus 로고    scopus 로고
    • Role for antisense RNA in regulating circadian clock function in Neurospora crassa
    • Kramer, C., Loros, J. J., Dunlap, J. C., and Crosthwaite, S. K. (2003). Role for antisense RNA in regulating circadian clock function in Neurospora crassa. Nature 421, 948-952. doi: 10. 1038/nature01427.
    • (2003) Nature , vol.421 , pp. 948-952
    • Kramer, C.1    Loros, J.J.2    Dunlap, J.C.3    Crosthwaite, S.K.4
  • 71
    • 33745852190 scopus 로고    scopus 로고
    • Essential role of 3'-untranslated region-mediated mRNA decay in circadian oscillations of mouse Period3 mRNA
    • Kwak, E., Kim, T. D., and Kim, K. T. (2006). Essential role of 3'-untranslated region-mediated mRNA decay in circadian oscillations of mouse Period3 mRNA. J. Biol. Chem. 281, 19100-19106. doi: 10. 1074/jbc. M511927200.
    • (2006) J. Biol. Chem , vol.281 , pp. 19100-19106
    • Kwak, E.1    Kim, T.D.2    Kim, K.T.3
  • 72
    • 84908347242 scopus 로고    scopus 로고
    • Mutational definition of binding requirements of an hnRNP-like protein in Arabidopsis using fluorescence correlation spectroscopy
    • Leder, V., Lummer, M., Tegeler, K., Humpert, F., Lewinski, M., Schüttpelz, M., et al. (2014). Mutational definition of binding requirements of an hnRNP-like protein in Arabidopsis using fluorescence correlation spectroscopy. Biochem. Biophys. Res. Commun. 453, 69-74. doi: 10. 1016/j. bbrc. 2014. 09. 056.
    • (2014) Biochem. Biophys. Res. Commun , vol.453 , pp. 69-74
    • Leder, V.1    Lummer, M.2    Tegeler, K.3    Humpert, F.4    Lewinski, M.5    Schüttpelz, M.6
  • 73
    • 84898990515 scopus 로고    scopus 로고
    • AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation
    • Lee, K.-H., Kim, S.-H., Kim, H.-J., Kim, W., Lee, H.-R., Jung, Y., et al. (2014). AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation. Nucleic Acids Res. 42, 3590-3606. doi: 10. 1093/nar/gkt1379.
    • (2014) Nucleic Acids Res , vol.42 , pp. 3590-3606
    • Lee, K.-H.1    Kim, S.-H.2    Kim, H.-J.3    Kim, W.4    Lee, H.-R.5    Jung, Y.6
  • 74
    • 84863012578 scopus 로고    scopus 로고
    • Rhythmic interaction between Period1 mRNA and HnRNP Q leads to circadian time-dependent translation
    • Lee, K. H., Woo, K. C., Kim, D. Y., Kim, T. D., Shin, J., Park, S. M., et al. (2012). Rhythmic interaction between Period1 mRNA and HnRNP Q leads to circadian time-dependent translation. Mol. Cell. Biol. 32, 717-728. doi: 10. 1128/MCB. 06177-11.
    • (2012) Mol. Cell. Biol , vol.32 , pp. 717-728
    • Lee, K.H.1    Woo, K.C.2    Kim, D.Y.3    Kim, T.D.4    Shin, J.5    Park, S.M.6
  • 75
    • 84882708809 scopus 로고    scopus 로고
    • Plant SILAC: Stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics
    • Lewandowska, D., Ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I., and Brown, J. W. S. (2013). Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics. PLoS ONE 8: e72207. doi: 10. 1371/journal. pone. 0072207.
    • (2013) PLoS ONE , vol.8
    • Lewandowska, D.1    Ten Have, S.2    Hodge, K.3    Tillemans, V.4    Lamond, A.I.5    Brown, J.W.S.6
  • 76
    • 84876918219 scopus 로고    scopus 로고
    • MicroRNAs inhibit the translation of target mRNAs on the Endoplasmic Reticulum in Arabidopsis
    • Li, S., Liu, L., Zhuang, X., Yu, Y., Liu, X., Cui, X., et al. (2013). MicroRNAs inhibit the translation of target mRNAs on the Endoplasmic Reticulum in Arabidopsis. Cell 153, 562-574. doi: 10. 1016/j. cell. 2013. 04. 005.
    • (2013) Cell , vol.153 , pp. 562-574
    • Li, S.1    Liu, L.2    Zhuang, X.3    Yu, Y.4    Liu, X.5    Cui, X.6
  • 77
    • 33644669368 scopus 로고    scopus 로고
    • Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway
    • Lidder, P., Gutierrez, R. A., Salome, P. A., McClung, C. R., and Green, P. J. (2005). Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway. Plant Physiol. 138, 2374-2385. doi: 10. 1104/pp. 105. 060368.
    • (2005) Plant Physiol , vol.138 , pp. 2374-2385
    • Lidder, P.1    Gutierrez, R.A.2    Salome, P.A.3    McClung, C.R.4    Green, P.J.5
  • 79
    • 84891920466 scopus 로고    scopus 로고
    • A glycine-rich RNA-binding protein affects gibberellin biosynthesis in Arabidopsis
    • Löhr, B., Streitner, C., Steffen, A., Lange, T., and Staiger, D. (2014). A glycine-rich RNA-binding protein affects gibberellin biosynthesis in Arabidopsis. Mol. Biol. Rep. 41, 439-445. doi: 10. 1007/s11033-013-2878-7.
    • (2014) Mol. Biol. Rep , vol.41 , pp. 439-445
    • Löhr, B.1    Streitner, C.2    Steffen, A.3    Lange, T.4    Staiger, D.5
  • 80
    • 84919650135 scopus 로고    scopus 로고
    • Rhythmic degradation explains and unifies circadian transcriptome and proteome data
    • Lück, S., Thurley, K., Thaben, P. F., and Westernmark, P. O. (2014). Rhythmic degradation explains and unifies circadian transcriptome and proteome data. Cell Rep. 9, 741-751. doi: 10. 1016/j. celrep. 2014. 09. 021.
    • (2014) Cell Rep , vol.9 , pp. 741-751
    • Lück, S.1    Thurley, K.2    Thaben, P.F.3    Westernmark, P.O.4
  • 81
    • 84871838945 scopus 로고    scopus 로고
    • Ordered changes in histone modifications at the core of the Arabidopsis circadian clock
    • Malapeira, J., Khaitova, L. C., and Mas, P. (2012). Ordered changes in histone modifications at the core of the Arabidopsis circadian clock. Proc. Natl. Acad. Sci. U. S. A. 109, 21540-21545. doi: 10. 1073/pnas. 1217022110.
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 21540-21545
    • Malapeira, J.1    Khaitova, L.C.2    Mas, P.3
  • 82
    • 18544377013 scopus 로고    scopus 로고
    • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    • Maris, C., Dominguez, C., and Allain, F. H. (2005). The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J. 272, 2118-2131. doi: 10. 1111/j. 1742-4658. 2005. 04653. x.
    • (2005) FEBS J , vol.272 , pp. 2118-2131
    • Maris, C.1    Dominguez, C.2    Allain, F.H.3
  • 83
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    • Marquez, Y., Brown, J. W. S., Simpson, C. G., Barta, A., and Kalyna, M. (2012). Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 22, 1184-1195. doi: 10. 1101/gr. 134106. 111.
    • (2012) Genome Res , vol.22 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.S.2    Simpson, C.G.3    Barta, A.4    Kalyna, M.5
  • 84
    • 0348134861 scopus 로고    scopus 로고
    • Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana
    • Mas, P., Kim, W. Y., Somers, D. E., and Kay, S. A. (2003). Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana. Nature 426, 567-570. doi: 10. 1038/nature02163.
    • (2003) Nature , vol.426 , pp. 567-570
    • Mas, P.1    Kim, W.Y.2    Somers, D.E.3    Kay, S.A.4
  • 85
    • 41649099358 scopus 로고    scopus 로고
    • A systematic forward genetic analysis identified components of the Chlamydomonas circadian system
    • Matsuo, T., Okamoto, K., Onai, K., Niwa, Y., Shimogawara, K., and Ishiura, M. (2008). A systematic forward genetic analysis identified components of the Chlamydomonas circadian system. Genes Dev. 22, 918-930. doi: 10. 1101/gad. 1650408.
    • (2008) Genes Dev , vol.22 , pp. 918-930
    • Matsuo, T.1    Okamoto, K.2    Onai, K.3    Niwa, Y.4    Shimogawara, K.5    Ishiura, M.6
  • 86
    • 0036669967 scopus 로고    scopus 로고
    • Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana
    • Matsushika, A., Imamura, A., Yamashino, T., and Mizuno, T. (2002). Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. Plant Cell Physiol. 43, 833-843. doi: 10. 1093/pcp/pcf118.
    • (2002) Plant Cell Physiol , vol.43 , pp. 833-843
    • Matsushika, A.1    Imamura, A.2    Yamashino, T.3    Mizuno, T.4
  • 87
    • 33745456764 scopus 로고    scopus 로고
    • Plant circadian rhythms
    • McClung, C. R. (2006). Plant circadian rhythms. Plant Cell 18, 792-803. doi: 10. 1105/tpc. 106. 040980.
    • (2006) Plant Cell , vol.18 , pp. 792-803
    • McClung, C.R.1
  • 88
    • 80052903129 scopus 로고    scopus 로고
    • The genetics of plant clocks
    • McClung, C. R. (2011). The genetics of plant clocks. Adv. Genet. 74, 105-139. doi: 10. 1016/B978-0-12-387690-4. 00004-0.
    • (2011) Adv. Genet , vol.74 , pp. 105-139
    • McClung, C.R.1
  • 89
    • 48149095822 scopus 로고    scopus 로고
    • Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense?
    • McGlincy, N. J., and Smith, C. W. (2008). Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense? Trends Biochem. Sci. 33, 385-393. doi: 10. 1016/j. tibs. 2008. 06. 001.
    • (2008) Trends Biochem. Sci , vol.33 , pp. 385-393
    • McGlincy, N.J.1    Smith, C.W.2
  • 90
    • 70349330769 scopus 로고    scopus 로고
    • Post-translational modifications in circadian rhythms
    • Mehra, A., Baker, C. L., Loros, J. J., and Dunlap, J. C. (2009). Post-translational modifications in circadian rhythms. Trends Biochem. Sci. 34, 483-490. doi: 10. 1016/j. tibs. 2009. 06. 006.
    • (2009) Trends Biochem. Sci , vol.34 , pp. 483-490
    • Mehra, A.1    Baker, C.L.2    Loros, J.J.3    Dunlap, J.C.4
  • 91
    • 84881506759 scopus 로고    scopus 로고
    • Nascent-Seq reveals novel features of mouse circadian transcriptional regulation
    • Menet, J. S., Rodriguez, J., Abruzzi, K. C., and Rosbash, M. (2012). Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. eLife Sci. 1: e00011. doi: 10. 7554/eLife. 00011.
    • (2012) eLife Sci , vol.1
    • Menet, J.S.1    Rodriguez, J.2    Abruzzi, K.C.3    Rosbash, M.4
  • 92
    • 0036802133 scopus 로고    scopus 로고
    • Phase-specific circadian clock regulatory elements in Arabidopsis
    • Michael, T. P., and McClung, C. R. (2002). Phase-specific circadian clock regulatory elements in Arabidopsis. Plant Physiol. 130, 627-638. doi: 10. 1104/pp. 004929.
    • (2002) Plant Physiol , vol.130 , pp. 627-638
    • Michael, T.P.1    McClung, C.R.2
  • 93
    • 0037783233 scopus 로고    scopus 로고
    • Enhancer trapping reveals widespread circadian clock transcriptional control in arabidopsis
    • Michael, T. P., and McClung, C. R. (2003). Enhancer trapping reveals widespread circadian clock transcriptional control in arabidopsis. Plant Physiol. 132, 629-639. doi: 10. 1104/pp. 021006.
    • (2003) Plant Physiol , vol.132 , pp. 629-639
    • Michael, T.P.1    McClung, C.R.2
  • 94
    • 1642564006 scopus 로고    scopus 로고
    • Input signals to the plant circadian clock
    • Millar, A. J. (2004). Input signals to the plant circadian clock. J. Exp. Bot. 55, 277-283. doi: 10. 1093/jxb/erh034.
    • (2004) J. Exp. Bot , vol.55 , pp. 277-283
    • Millar, A.J.1
  • 95
    • 0002125160 scopus 로고
    • Circadian control of cab gene transcription and mRNA accumulation in Arabidopsis
    • Millar, A. J., and Kay, S. (1991). Circadian control of cab gene transcription and mRNA accumulation in Arabidopsis. Plant Cell 3, 541-550. doi: 10. 1105/tpc. 3. 5. 541.
    • (1991) Plant Cell , vol.3 , pp. 541-550
    • Millar, A.J.1    Kay, S.2
  • 96
    • 84922394251 scopus 로고    scopus 로고
    • Analysis of mRNA translation states in Arabidopsis over the diurnal cycle by polysome microarray
    • ed. D. Staiger (New York, NY: Springer)
    • Missra, A., and von Arnim, A. (2014). "Analysis of mRNA translation states in Arabidopsis over the diurnal cycle by polysome microarray, " in Plant Circadian Networks, ed. D. Staiger (New York, NY: Springer), 157-174. doi: 10. 1007/978-1-4939-0700-7_10.
    • (2014) Plant Circadian Networks , pp. 157-174
    • Missra, A.1    von Arnim, A.2
  • 97
    • 84865204375 scopus 로고    scopus 로고
    • Complexity in the wiring and regulation of plant circadian networks
    • Nagel, D. H., and Kay, S. A. (2012). Complexity in the wiring and regulation of plant circadian networks. Curr. Biol. 22, R648-R657. doi: 10. 1016/j. cub. 2012. 07. 025.
    • (2012) Curr. Biol , vol.22 , pp. R648-R657
    • Nagel, D.H.1    Kay, S.A.2
  • 98
    • 70349245117 scopus 로고    scopus 로고
    • The miRNA-192/194 cluster regulates the Period gene family and the circadian clock
    • Nagel, R., Clijsters, L., and Agami, R. (2009). The miRNA-192/194 cluster regulates the Period gene family and the circadian clock. FEBS J. 276, 5447-5455. doi: 10. 1111/j. 1742-4658. 2009. 07229. x.
    • (2009) FEBS J , vol.276 , pp. 5447-5455
    • Nagel, R.1    Clijsters, L.2    Agami, R.3
  • 99
    • 0027619293 scopus 로고
    • DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco
    • Newman, T. C., Ohme-Takagi, M., Taylor, C. B., and Green, P. J. (1993). DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco. Plant Cell 5, 701-714. doi: 10. 1105/tpc. 5. 6. 701.
    • (1993) Plant Cell , vol.5 , pp. 701-714
    • Newman, T.C.1    Ohme-Takagi, M.2    Taylor, C.B.3    Green, P.J.4
  • 100
    • 84875222858 scopus 로고    scopus 로고
    • PseudomonasHopU1 affects interaction of plant immune receptor mRNAs to the RNA-binding protein GRP7
    • Nicaise, V., Joe, A., Jeong, B., Korneli, C., Boutrot, F., Wested, I., et al. (2013). PseudomonasHopU1 affects interaction of plant immune receptor mRNAs to the RNA-binding protein GRP7. EMBO J. 32, 701-712. doi: 10. 1038/emboj. 2013. 15.
    • (2013) EMBO J , vol.32 , pp. 701-712
    • Nicaise, V.1    Joe, A.2    Jeong, B.3    Korneli, C.4    Boutrot, F.5    Wested, I.6
  • 101
    • 78649720695 scopus 로고    scopus 로고
    • Cutting the nonsense: The degradation of PTC-containing mRNAs
    • Nicholson, P., and Mühlemann, O. (2010). Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochem. Soc. Trans. 38, 1615-1620. doi: 10. 1042/BST0381615.
    • (2010) Biochem. Soc. Trans , vol.38 , pp. 1615-1620
    • Nicholson, P.1    Mühlemann, O.2
  • 102
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen, T. W., and Graveley, B. R. (2010). Expansion of the eukaryotic proteome by alternative splicing. Nature 463, 457-463. doi: 10. 1038/nature08909.
    • (2010) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 103
    • 70350216071 scopus 로고    scopus 로고
    • Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner
    • Nyiko, T., Sonkoly, B., Merai, Z., Benkovics, A. H., and Silhavy, D. (2009). Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol. Biol. 71, 367-378. doi: 10. 1007/s11103-009-9528-4.
    • (2009) Plant Mol. Biol , vol.71 , pp. 367-378
    • Nyiko, T.1    Sonkoly, B.2    Merai, Z.3    Benkovics, A.H.4    Silhavy, D.5
  • 104
    • 84892976423 scopus 로고    scopus 로고
    • Molecular architecture of the mammalian circadian clock
    • Partch, C. L., Green, C. B., and Takahashi, J. S. (2013). Molecular architecture of the mammalian circadian clock. Trends Cell Biol. 24, 90-99. doi: 10. 1016/j. tcb. 2013. 07. 002.
    • (2013) Trends Cell Biol , vol.24 , pp. 90-99
    • Partch, C.L.1    Green, C.B.2    Takahashi, J.S.3
  • 105
    • 84873049075 scopus 로고    scopus 로고
    • LSM proteins provide accurate splicing and decay of selected transcripts to ensure normalArabidopsis development
    • Perea-Resa, C., Hernandez-Verdeja, T., Lopez-Cobollo, R., Castellano, M. D. M., and Salinas, J. (2012). LSM proteins provide accurate splicing and decay of selected transcripts to ensure normalArabidopsis development. Plant Cell 24, 4930-4947. doi: 10. 1105/tpc. 112. 103697.
    • (2012) Plant Cell , vol.24 , pp. 4930-4947
    • Perea-Resa, C.1    Hernandez-Verdeja, T.2    Lopez-Cobollo, R.3    Castellano, M.D.M.4    Salinas, J.5
  • 106
    • 84908042429 scopus 로고    scopus 로고
    • Role for LSM genes in the regulation of circadian rhythms. Proc. Natl. Acad. Sci
    • Perez-Santángelo, S., Mancini, E., Francey, L. J., Schlaen, R. G., Chernomoretz, A., Hogenesch, J. B., et al. (2014). Role for LSM genes in the regulation of circadian rhythms. Proc. Natl. Acad. Sci. U. S. A. 111, 15166-15171. doi: 10. 1073/pnas. 1409791111.
    • (2014) U.S.A , vol.111 , pp. 15166-15171
    • Perez-Santángelo, S.1    Mancini, E.2    Francey, L.J.3    Schlaen, R.G.4    Chernomoretz, A.5    Hogenesch, J.B.6
  • 107
    • 84872815534 scopus 로고    scopus 로고
    • Genomic analysis reveals novel connections between alternative splicing and circadian regulatory networks
    • Perez-Santángelo, S., Schlaen, R. G., and Yanovsky, M. J. (2013). Genomic analysis reveals novel connections between alternative splicing and circadian regulatory networks. Brief. Funct. Genomics 12, 13-24. doi: 10. 1093/bfgp/els052.
    • (2013) Brief. Funct. Genomics , vol.12 , pp. 13-24
    • Perez-Santángelo, S.1    Schlaen, R.G.2    Yanovsky, M.J.3
  • 108
    • 0027675223 scopus 로고
    • Circadian and light-regulated expression of nitrate reductase in Arabidopsis
    • Pilgrim, M. L., Caspar, T., Quail, P. H., and McClung, C. R. (1993). Circadian and light-regulated expression of nitrate reductase in Arabidopsis. Plant Mol. Biol. 23, 349-364. doi: 10. 1007/BF00029010.
    • (1993) Plant Mol. Biol , vol.23 , pp. 349-364
    • Pilgrim, M.L.1    Caspar, T.2    Quail, P.H.3    McClung, C.R.4
  • 109
    • 73149106617 scopus 로고    scopus 로고
    • Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis
    • Piques, M., Schulze, W. X., Hohne, M., Usadel, B., Gibon, Y., Rohwer, J., et al. (2009). Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol. Syst. Biol. 5: 314. doi: 10. 1038/msb. 2009. 68.
    • (2009) Mol. Syst. Biol , vol.5
    • Piques, M.1    Schulze, W.X.2    Hohne, M.3    Usadel, B.4    Gibon, Y.5    Rohwer, J.6
  • 110
    • 84901229145 scopus 로고    scopus 로고
    • Rhythmic U2af26 alternative splicing controls PERIOD1 stability and the circadian clock in mice
    • Preußner, M., Wilhelmi, I., Schultz, A.-S., Finkernagel, F., Michel, M., Möröy, T., et al. (2014). Rhythmic U2af26 alternative splicing controls PERIOD1 stability and the circadian clock in mice. Mol. Cell 54, 651-662. doi: 10. 1016/j. molcel. 2014. 04. 015.
    • (2014) Mol. Cell , vol.54 , pp. 651-662
    • Preußner, M.1    Wilhelmi, I.2    Schultz, A.-S.3    Finkernagel, F.4    Michel, M.5    Möröy, T.6
  • 111
    • 80052447253 scopus 로고    scopus 로고
    • Ending the message: Poly(A) signals then and now
    • Proudfoot, N. J. (2011). Ending the message: poly(A) signals then and now. Genes Dev. 25, 1770-1782. doi: 10. 1101/gad. 17268411.
    • (2011) Genes Dev , vol.25 , pp. 1770-1782
    • Proudfoot, N.J.1
  • 112
    • 33744515807 scopus 로고    scopus 로고
    • Circadian orchestration of the hepatic proteome
    • Reddy, A. B., Karp, N. A., Maywood, E. S., Sage, E. A., Deery, M., O'neill, J. S., et al. (2006). Circadian orchestration of the hepatic proteome. Curr. Biol. 16, 1107-1115. doi: 10. 1016/j. cub. 2006. 04. 026.
    • (2006) Curr. Biol , vol.16 , pp. 1107-1115
    • Reddy, A.B.1    Karp, N.A.2    Maywood, E.S.3    Sage, E.A.4    Deery, M.5    O'neill, J.S.6
  • 113
    • 6944222929 scopus 로고    scopus 로고
    • Plant serine/arginine-rich proteins and their role in pre-mRNA splicing
    • Reddy, A. S. (2004). Plant serine/arginine-rich proteins and their role in pre-mRNA splicing. Trends Plant Sci. 9, 541-547. doi: 10. 1016/j. tplants. 2004. 09. 007.
    • (2004) Trends Plant Sci , vol.9 , pp. 541-547
    • Reddy, A.S.1
  • 114
    • 84888422652 scopus 로고    scopus 로고
    • Complexity of the alternative splicing landscape in plants
    • Reddy, A. S. N., Marquez, Y., Kalyna, M., and Barta, A. (2013). Complexity of the alternative splicing landscape in plants. Plant Cell 25, 3657-3683. doi: 10. 1105/tpc. 113. 117523.
    • (2013) Plant Cell , vol.25 , pp. 3657-3683
    • Reddy, A.S.N.1    Marquez, Y.2    Kalyna, M.3    Barta, A.4
  • 115
    • 84865194709 scopus 로고    scopus 로고
    • Deciphering the plant splicing code: Experimental and computational approaches for predicting alternative splicing and splicing regulatory elements
    • Reddy, A. S. N., Rogers, M. F., Richardson, D. N., Hamilton, M., and Ben-Hur, A. (2012). Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements. Front. Plant Sci. 3: 18. doi: 10. 3389/fpls. 2012. 00018.
    • (2012) Front. Plant Sci , vol.3
    • Reddy, A.S.N.1    Rogers, M.F.2    Richardson, D.N.3    Hamilton, M.4    Ben-Hur, A.5
  • 116
    • 0001388831 scopus 로고
    • Diurnal and circadian light-harvesting complex and quinone B-binding protein synthesis in leaves of tomato (Lycopersicon esculentum)
    • Riesselmann, S., and Piechulla, B. (1992). Diurnal and circadian light-harvesting complex and quinone B-binding protein synthesis in leaves of tomato (Lycopersicon esculentum). Plant Physiol. 100, 1840-1845. doi: 10. 1104/pp. 100. 4. 1840.
    • (1992) Plant Physiol , vol.100 , pp. 1840-1845
    • Riesselmann, S.1    Piechulla, B.2
  • 117
    • 0023731155 scopus 로고
    • Vasopressin mRNA in the suprachiasmatic nuclei: Daily regulation of polyadenylate tail length
    • Robinson, B. G., Frim, D. M., Schwartz, W. J., and Majzoub, J. A. (1988). Vasopressin mRNA in the suprachiasmatic nuclei: daily regulation of polyadenylate tail length. Science 241, 342-344. doi: 10. 1126/science. 3388044.
    • (1988) Science , vol.241 , pp. 342-344
    • Robinson, B.G.1    Frim, D.M.2    Schwartz, W.J.3    Majzoub, J.A.4
  • 118
    • 0035782669 scopus 로고    scopus 로고
    • The molecular genetics of circadian rhythms in Arabidopsis
    • Roden, L. C., and Carré, I. A. (2001). The molecular genetics of circadian rhythms in Arabidopsis. Semin. Cell Dev. Biol. 12, 305-315. doi: 10. 1006/scdb. 2001. 0258.
    • (2001) Semin. Cell Dev. Biol , vol.12 , pp. 305-315
    • Roden, L.C.1    Carré, I.A.2
  • 119
    • 84883167952 scopus 로고    scopus 로고
    • Biogenesis, Turnover, and mode of action of plant microRNAs
    • Rogers, K., and Chen, X. (2013). Biogenesis, Turnover, and mode of action of plant microRNAs. Plant Cell 25, 2383-2399. doi: 10. 1105/tpc. 113. 113159.
    • (2013) Plant Cell , vol.25 , pp. 2383-2399
    • Rogers, K.1    Chen, X.2
  • 120
    • 77950243975 scopus 로고    scopus 로고
    • The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames
    • Roy, B., Vaughn, J. N., Kim, B.-H., Zhou, F., Gilchrist, M. A., and von Arnim, A. G. (2010). The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames. RNA 16, 748-761. doi: 10. 1261/rna. 2056010.
    • (2010) RNA , vol.16 , pp. 748-761
    • Roy, B.1    Vaughn, J.N.2    Kim, B.-H.3    Zhou, F.4    Gilchrist, M.A.5    von Arnim, A.G.6
  • 121
    • 84891960868 scopus 로고    scopus 로고
    • Translational regulation of cytoplasmic mRNAs
    • Roy, B., and von Arnim, A. G. (2013). Translational regulation of cytoplasmic mRNAs. Arabidopsis Book 11: e0165. doi: 10. 1199/tab. 0165.
    • (2013) Arabidopsis Book , vol.11
    • Roy, B.1    von Arnim, A.G.2
  • 123
    • 78149282260 scopus 로고    scopus 로고
    • A methyl transferase links the circadian clock to the regulation of alternative splicing
    • Sanchez, S. E., Petrillo, E., Beckwith, E. J., Zhang, X., Rugnone, M. L., Hernando, C. E., et al. (2010). A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468, 112-116. doi: 10. 1038/nature09470.
    • (2010) Nature , vol.468 , pp. 112-116
    • Sanchez, S.E.1    Petrillo, E.2    Beckwith, E.J.3    Zhang, X.4    Rugnone, M.L.5    Hernando, C.E.6
  • 124
    • 81255210991 scopus 로고    scopus 로고
    • Alternative splicing at the right time
    • Sanchez, S. E., Petrillo, E., Kornblihtt, A. R., and Yanovsky, M. J. (2011). Alternative splicing at the right time. RNA Biol. 8, 954-959. doi: 10. 4161/rna. 8. 6. 17336.
    • (2011) RNA Biol , vol.8 , pp. 954-959
    • Sanchez, S.E.1    Petrillo, E.2    Kornblihtt, A.R.3    Yanovsky, M.J.4
  • 125
    • 0030292818 scopus 로고    scopus 로고
    • Circadian clock neurons in the silkmoth Antheraea pernyi: Novel mechanisms of period protein regulation
    • Sauman, I., and Reppert, S. M. (1996). Circadian clock neurons in the silkmoth Antheraea pernyi: novel mechanisms of period protein regulation. Neuron 17, 889-900. doi: 10. 1016/S0896-6273(00)80220-2.
    • (1996) Neuron , vol.17 , pp. 889-900
    • Sauman, I.1    Reppert, S.M.2
  • 126
    • 84875974859 scopus 로고    scopus 로고
    • A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana
    • Schmal, C., Reimann, P., and Staiger, D. (2013). A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana. PLoS Comput. Biol. 9: e1002986. doi: 10. 1371/journal. pcbi. 1002986.
    • (2013) PLoS Comput. Biol , vol.9
    • Schmal, C.1    Reimann, P.2    Staiger, D.3
  • 127
    • 77950903733 scopus 로고    scopus 로고
    • A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8
    • Schmidt, F., Marnef, A., Cheung, M. K., Wilson, I., Hancock, J., Staiger, D., et al. (2010). A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Mol. Biol. Rep. 37, 839-845. doi: 10. 1007/s11033-009-9636-x.
    • (2010) Mol. Biol. Rep , vol.37 , pp. 839-845
    • Schmidt, F.1    Marnef, A.2    Cheung, M.K.3    Wilson, I.4    Hancock, J.5    Staiger, D.6
  • 128
    • 20444385132 scopus 로고    scopus 로고
    • At the pulse of time: Protein interactions determine the pace of circadian clocks
    • Schöning, J. C., and Staiger, D. (2005). At the pulse of time: protein interactions determine the pace of circadian clocks. FEBS Lett. 579, 3246-3252. doi: 10. 1016/j. febslet. 2005. 03. 028.
    • (2005) FEBS Lett , vol.579 , pp. 3246-3252
    • Schöning, J.C.1    Staiger, D.2
  • 129
    • 58749102066 scopus 로고    scopus 로고
    • Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
    • Schöning, J. C., Streitner, C., Meyer, I. M., Gao, Y., and Staiger, D. (2008). Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res. 36, 6977-6987. doi: 10. 1093/nar/gkn847.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6977-6987
    • Schöning, J.C.1    Streitner, C.2    Meyer, I.M.3    Gao, Y.4    Staiger, D.5
  • 130
    • 36849007471 scopus 로고    scopus 로고
    • Autoregulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation
    • Schöning, J. C., Streitner, C., Page, D. R., Hennig, S., Uchida, K., Wolf, E., et al. (2007). Autoregulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J. 52, 1119-1130. doi: 10. 1111/j. 1365-313X. 2007. 03302. x.
    • (2007) Plant J , vol.52 , pp. 1119-1130
    • Schöning, J.C.1    Streitner, C.2    Page, D.R.3    Hennig, S.4    Uchida, K.5    Wolf, E.6
  • 131
    • 84896876294 scopus 로고    scopus 로고
    • Multiple layers of posttranslational regulation refine circadian clock activity in Arabidopsis
    • Seo, P. J., and Mas, P. (2014). Multiple layers of posttranslational regulation refine circadian clock activity in Arabidopsis. Plant Cell 26, 79-87. doi: 10. 1105/tpc. 113. 119842.
    • (2014) Plant Cell , vol.26 , pp. 79-87
    • Seo, P.J.1    Mas, P.2
  • 132
    • 84864440018 scopus 로고    scopus 로고
    • A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis
    • Seo, P. J., Park, M.-J., Lim, M.-H., Kim, S.-G., Lee, M., Baldwin, I. T., et al. (2012). A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell 24, 2427-2442. doi: 10. 1105/tpc. 112. 098723.
    • (2012) Plant Cell , vol.24 , pp. 2427-2442
    • Seo, P.J.1    Park, M.-J.2    Lim, M.-H.3    Kim, S.-G.4    Lee, M.5    Baldwin, I.T.6
  • 133
    • 84864695758 scopus 로고    scopus 로고
    • Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation
    • Sherstnev, A., Duc, C., Cole, C., Zacharaki, V., Hornyik, C., Ozsolak, F., et al. (2012). Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nat. Struct. Mol. Biol. 19, 845-852. doi: 10. 1038/nsmb. 2345.
    • (2012) Nat. Struct. Mol. Biol , vol.19 , pp. 845-852
    • Sherstnev, A.1    Duc, C.2    Cole, C.3    Zacharaki, V.4    Hornyik, C.5    Ozsolak, F.6
  • 134
    • 84921953942 scopus 로고    scopus 로고
    • Phytochrome controls alternative splicing to mediate light responses in Arabidopsis
    • Shikata, H., Hanada, K., Ushijima, T., Nakashima, M., Suzuki, Y., and Matsushita, T. (2014). Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 111, 18781-18786. doi: 10. 1073/pnas. 1407147112.
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 18781-18786
    • Shikata, H.1    Hanada, K.2    Ushijima, T.3    Nakashima, M.4    Suzuki, Y.5    Matsushita, T.6
  • 135
    • 61749093335 scopus 로고    scopus 로고
    • Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398
    • Sire, C., Moreno, A. B., Garcia-Chapa, M., Lopez-Moya, J. J., and San Segundo, B. (2009). Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. FEBS Lett. 583, 1039-1044. doi: 10. 1016/j. febslet. 2009. 02. 024.
    • (2009) FEBS Lett , vol.583 , pp. 1039-1044
    • Sire, C.1    Moreno, A.B.2    Garcia-Chapa, M.3    Lopez-Moya, J.J.4    San Segundo, B.5
  • 136
    • 0030698128 scopus 로고    scopus 로고
    • Post-transcriptional regulation contributes to Drosophilaclock gene mRNA cycling
    • So, W. V., and Rosbash, M. (1997). Post-transcriptional regulation contributes to Drosophilaclock gene mRNA cycling. EMBO J. 16, 7146-7155. doi: 10. 1093/emboj/16. 23. 7146.
    • (1997) EMBO J , vol.16 , pp. 7146-7155
    • So, W.V.1    Rosbash, M.2
  • 137
    • 84870317601 scopus 로고    scopus 로고
    • Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci
    • Song, H.-R., and Noh, Y.-S. (2012). Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci. Mol. Cells 34, 279-287. doi: 10. 1007/s10059-012-0103-5.
    • (2012) Mol. Cells , vol.34 , pp. 279-287
    • Song, H.-R.1    Noh, Y.-S.2
  • 138
    • 0035969438 scopus 로고    scopus 로고
    • RNA-binding proteins and circadian rhythms in Arabidopsis thaliana
    • Staiger, D. (2001). RNA-binding proteins and circadian rhythms in Arabidopsis thaliana. Philo. Trans. R. Soc. Lond. B Biol. Sci. 356, 1755-1759. doi: 10. 1098/rstb. 2001. 0964.
    • (2001) Philo. Trans. R. Soc. Lond. B Biol. Sci , vol.356 , pp. 1755-1759
    • Staiger, D.1
  • 139
    • 0036939241 scopus 로고    scopus 로고
    • Circadian rhythms in Arabidopsis: Time for nuclear proteins
    • Staiger, D. (2002). Circadian rhythms in Arabidopsis: time for nuclear proteins. Planta 214, 334-344. doi: 10. 1007/s004250100662.
    • (2002) Planta , vol.214 , pp. 334-344
    • Staiger, D.1
  • 140
    • 84888396486 scopus 로고    scopus 로고
    • Alternative splicing at the intersection of biological timing, development, and stress responses
    • Staiger, D., and Brown, J. W. S. (2013). Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell 25, 3640-3656. doi: 10. 1105/tcp. 113. 117523.
    • (2013) Plant Cell , vol.25 , pp. 3640-3656
    • Staiger, D.1    Brown, J.W.S.2
  • 141
    • 80053318065 scopus 로고    scopus 로고
    • RNA-based regulation in the plant circadian clock
    • Staiger, D., and Green, R. (2011). RNA-based regulation in the plant circadian clock. Trends Plant Sci. 16, 517-523. doi: 10. 1016/j. tplants. 2011. 06. 002.
    • (2011) Trends Plant Sci , vol.16 , pp. 517-523
    • Staiger, D.1    Green, R.2
  • 142
    • 0033061222 scopus 로고    scopus 로고
    • The circadian system of Arabidopsis thaliana: Forward and reverse genetic approaches
    • Staiger, D., and Heintzen, C. (1999). The circadian system of Arabidopsis thaliana: forward and reverse genetic approaches. Chronobiol. Int. 16, 1-16. doi: 10. 3109/07420529908998708.
    • (1999) Chronobiol. Int , vol.16 , pp. 1-16
    • Staiger, D.1    Heintzen, C.2
  • 143
    • 78650995766 scopus 로고    scopus 로고
    • Spotlight on post-transcriptional control in the circadian system
    • Staiger, D., and Köster, T. (2011). Spotlight on post-transcriptional control in the circadian system. Cell Mol. Life. Sci. 68, 71-83. doi: 10. 1007/s00018-010-0513-5.
    • (2011) Cell Mol. Life. Sci , vol.68 , pp. 71-83
    • Staiger, D.1    Köster, T.2
  • 144
  • 145
    • 77957803561 scopus 로고    scopus 로고
    • Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7
    • Streitner, C., Hennig, L., Korneli, C., and Staiger, D. (2010). Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7. BMC Plant Biol. 10: 221. doi: 10. 1186/1471-2229-10-221.
    • (2010) BMC Plant Biol , vol.10
    • Streitner, C.1    Hennig, L.2    Korneli, C.3    Staiger, D.4
  • 146
    • 84871195123 scopus 로고    scopus 로고
    • An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with target transcripts in Arabidopsis thaliana
    • Streitner, C., Köster, T., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S., et al. (2012). An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with target transcripts in Arabidopsis thaliana. Nucleic Acids Res. 40, 11240-11255. doi: 10. 1093/nar/gks873.
    • (2012) Nucleic Acids Res , vol.40 , pp. 11240-11255
    • Streitner, C.1    Köster, T.2    Simpson, C.G.3    Shaw, P.4    Danisman, S.5    Brown, J.W.S.6
  • 147
    • 84866843094 scopus 로고    scopus 로고
    • Alternative splicing in plants-coming of age
    • Syed, N. H., Kalyna, M., Marquez, Y., Barta, A., and Brown, J. W. S. (2012). Alternative splicing in plants-coming of age. Trends Plant Sci. 17, 616-623. doi: 10. 1016/j. tplants. 2012. 06. 001.
    • (2012) Trends Plant Sci , vol.17 , pp. 616-623
    • Syed, N.H.1    Kalyna, M.2    Marquez, Y.3    Barta, A.4    Brown, J.W.S.5
  • 148
    • 70449707101 scopus 로고    scopus 로고
    • Identification of a novel nuclear localization signal and speckle-targeting sequence of tuftelin-interacting protein 11, a splicing factor involved in spliceosome disassembly
    • Tannukit, S., Crabb, T. L., Hertel, K. J., Wen, X., Jans, D. A., and Paine, M. L. (2009). Identification of a novel nuclear localization signal and speckle-targeting sequence of tuftelin-interacting protein 11, a splicing factor involved in spliceosome disassembly. Biochem. Biophys. Res. Commun. 390, 1044-1050. doi: 10. 1016/j. bbrc. 2009. 10. 111.
    • (2009) Biochem. Biophys. Res. Commun , vol.390 , pp. 1044-1050
    • Tannukit, S.1    Crabb, T.L.2    Hertel, K.J.3    Wen, X.4    Jans, D.A.5    Paine, M.L.6
  • 149
    • 67649494617 scopus 로고    scopus 로고
    • Arabidopsis RNA immunoprecipitation
    • Terzi, L. C., and Simpson, G. G. (2009). Arabidopsis RNA immunoprecipitation. Plant J. 59, 163-168. doi: 10. 1111/j. 1365-313X. 2009. 03859. x.
    • (2009) Plant J , vol.59 , pp. 163-168
    • Terzi, L.C.1    Simpson, G.G.2
  • 150
    • 58049161508 scopus 로고    scopus 로고
    • Roles of eukaryotic Lsm proteins in the regulation of mRNA function
    • Tharun, S. (2009). Roles of eukaryotic Lsm proteins in the regulation of mRNA function. Int. Rev. Cell. Mol. Biol. 272, 149-189. doi: 10. 1016/S1937-6448(08)01604-3.
    • (2009) Int. Rev. Cell. Mol. Biol , vol.272 , pp. 149-189
    • Tharun, S.1
  • 151
    • 84871188835 scopus 로고    scopus 로고
    • The role of polypyrimidine tract-binding proteins and other hnRNP proteins in plant splicing regulation
    • Wachter, A., Rühl, C., and Stauffer, E. (2012). The role of polypyrimidine tract-binding proteins and other hnRNP proteins in plant splicing regulation. Front. Plant Sci. 3: 81. doi: 10. 3389/fpls. 2012. 00081.
    • (2012) Front. Plant Sci , vol.3
    • Wachter, A.1    Rühl, C.2    Stauffer, E.3
  • 152
    • 0035095476 scopus 로고    scopus 로고
    • Identification of target mRNAs for the clock-controlled RNA-binding protein chlamy 1 from Chlamydomonas reinhardtii
    • Waltenberger, H., Schneid, C., Grosch, J. O., Bareiss, A., and Mittag, M. (2001). Identification of target mRNAs for the clock-controlled RNA-binding protein chlamy 1 from Chlamydomonas reinhardtii. Mol. Genet. Genomics 265, 180-188. doi: 10. 1007/s004380000406.
    • (2001) Mol. Genet. Genomics , vol.265 , pp. 180-188
    • Waltenberger, H.1    Schneid, C.2    Grosch, J.O.3    Bareiss, A.4    Mittag, M.5
  • 153
    • 84876894390 scopus 로고    scopus 로고
    • Ribonucleoprotein complexes that control circadian clocks
    • Wang, D., Liang, X., Chen, X., and Guo, J. (2013). Ribonucleoprotein complexes that control circadian clocks. Int. J. Mol. Sci. 14, 9018-9036. doi: 10. 3390/ijms14059018.
    • (2013) Int. J. Mol. Sci , vol.14 , pp. 9018-9036
    • Wang, D.1    Liang, X.2    Chen, X.3    Guo, J.4
  • 154
    • 77953121812 scopus 로고    scopus 로고
    • PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock
    • Wang, L., Fujiwara, S., and Somers, D. E. (2010). PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock. EMBO J. 29, 1903-1915. doi: 10. 1038/emboj. 2010. 76.
    • (2010) EMBO J , vol.29 , pp. 1903-1915
    • Wang, L.1    Fujiwara, S.2    Somers, D.E.3
  • 155
    • 84867026807 scopus 로고    scopus 로고
    • SKIP Is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis
    • Wang, X., Wu, F., Xie, Q., Wang, H., Wang, Y., Yue, Y., et al. (2012). SKIP Is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell 24, 3278-3295. doi: 10. 1105/tpc. 112. 100081.
    • (2012) Plant Cell , vol.24 , pp. 3278-3295
    • Wang, X.1    Wu, F.2    Xie, Q.3    Wang, H.4    Wang, Y.5    Yue, Y.6
  • 156
    • 3042719574 scopus 로고    scopus 로고
    • Rhythmic expression of Nocturnin mRNA in multiple tissues of the mouse
    • Wang, Y., Osterbur, D. L., Megaw, P. L., Tosini, G., Fukuhara, C., Green, C. B., et al. (2001). Rhythmic expression of Nocturnin mRNA in multiple tissues of the mouse. BMC Dev. Biol. 1: 9. doi: 10. 1186/1471-213X-1-9.
    • (2001) BMC Dev. Biol , vol.1
    • Wang, Y.1    Osterbur, D.L.2    Megaw, P.L.3    Tosini, G.4    Fukuhara, C.5    Green, C.B.6
  • 157
    • 73549102403 scopus 로고    scopus 로고
    • Circadian amplitude of cryptochrome 1 is modulated by mRNA stability regulation via cytoplasmic hnRNP D oscillation
    • Woo, K. C., Ha, D. C., Lee, K. H., Kim, D. Y., Kim, T. D., and Kim, K. T. (2010). Circadian amplitude of cryptochrome 1 is modulated by mRNA stability regulation via cytoplasmic hnRNP D oscillation. Mol. Cell. Biol. 30, 197-205. doi: 10. 1128/MCB. 01154-09.
    • (2010) Mol. Cell. Biol , vol.30 , pp. 197-205
    • Woo, K.C.1    Ha, D.C.2    Lee, K.H.3    Kim, D.Y.4    Kim, T.D.5    Kim, K.T.6
  • 158
    • 58549089726 scopus 로고    scopus 로고
    • Mouse period 2 mRNA circadian oscillation is modulated by PTB-mediated rhythmic mRNA degradation
    • Woo, K. C., Kim, T. D., Lee, K. H., Kim, D. Y., Kim, W., Lee, K. Y., et al. (2009). Mouse period 2 mRNA circadian oscillation is modulated by PTB-mediated rhythmic mRNA degradation. Nucleic Acids Res. 37, 26-37. doi: 10. 1093/nar/gkn893.
    • (2009) Nucleic Acids Res , vol.37 , pp. 26-37
    • Woo, K.C.1    Kim, T.D.2    Lee, K.H.3    Kim, D.Y.4    Kim, W.5    Lee, K.Y.6
  • 159
    • 0027023614 scopus 로고
    • The role of the transcriptional activator protein DBP in circadian liver gene expression
    • Wuarin, J., Falvey, E., Lavery, D., Talbot, D., Schmidt, E., Ossipow, V., et al. (1992). The role of the transcriptional activator protein DBP in circadian liver gene expression. J. Cell Sci. 16, 123-127. doi: 10. 1242/jcs. 1992. Supplement_16. 15.
    • (1992) J. Cell Sci , vol.16 , pp. 123-127
    • Wuarin, J.1    Falvey, E.2    Lavery, D.3    Talbot, D.4    Schmidt, E.5    Ossipow, V.6
  • 160
    • 79961040833 scopus 로고    scopus 로고
    • Alternative polyadenylation and gene expression regulation in plants
    • Xing, D., and Li, Q. Q. (2011). Alternative polyadenylation and gene expression regulation in plants. Wiley Interdiscip. Rev. RNA 2, 445-458. doi: 10. 1002/wrna. 59.
    • (2011) Wiley Interdiscip. Rev. RNA , vol.2 , pp. 445-458
    • Xing, D.1    Li, Q.Q.2
  • 161
    • 84908432601 scopus 로고    scopus 로고
    • Transcriptional interference by antisense RNA is required for circadian clock function
    • Xue, Z., Ye, Q., Anson, S. R., Yang, J., Xiao, G., Kowbel, D., et al. (2014). Transcriptional interference by antisense RNA is required for circadian clock function. Nature 514, 650-653. doi: 10. 1038/nature13671.
    • (2014) Nature , vol.514 , pp. 650-653
    • Xue, Z.1    Ye, Q.2    Anson, S.R.3    Yang, J.4    Xiao, G.5    Kowbel, D.6
  • 162
    • 36249009158 scopus 로고    scopus 로고
    • CCA1 Transcript stability and the entrainment of the circadian clock in Arabidopsis
    • Yakir, E., Hilman, D., Hassidim, M., and Green, R. M. (2007). CCA1 Transcript stability and the entrainment of the circadian clock in Arabidopsis. Plant Physiol. 145, 925-932. doi: 10. 1104/pp. 107. 103812.
    • (2007) Plant Physiol , vol.145 , pp. 925-932
    • Yakir, E.1    Hilman, D.2    Hassidim, M.3    Green, R.M.4
  • 163
    • 0034871562 scopus 로고    scopus 로고
    • Signaling networks in the plant circadian system
    • Yanovsky, M. J., and Kay, S. A. (2001). Signaling networks in the plant circadian system. Curr. Opin. Plant Biol. 4, 429-435. doi: 10. 1016/S1369-5266(00)00196-5.
    • (2001) Curr. Opin. Plant Biol , vol.4 , pp. 429-435
    • Yanovsky, M.J.1    Kay, S.A.2
  • 164
    • 79952404897 scopus 로고    scopus 로고
    • Circadian clocks and adaptation in Arabidopsis
    • Yerushalmi, S., Yakir, E., and Green, R. M. (2011). Circadian clocks and adaptation in Arabidopsis. Mol. Ecol. 20, 1155-1165. doi: 10. 1111/j. 1365-294X. 2010. 04962. x.
    • (2011) Mol. Ecol , vol.20 , pp. 1155-1165
    • Yerushalmi, S.1    Yakir, E.2    Green, R.M.3
  • 165
    • 0035458732 scopus 로고    scopus 로고
    • Time zones: A comparative genetics of circadian clocks
    • Young, M. W., and Kay, S. A. (2001). Time zones: a comparative genetics of circadian clocks. Nat. Rev. Genet. 2, 702-715. doi: 10. 1038/35088576.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 702-715
    • Young, M.W.1    Kay, S.A.2
  • 166
    • 79955906744 scopus 로고    scopus 로고
    • Posttranscriptional mechanisms in controlling eukaryotic circadian rhythms
    • Zhang, L., Weng, W., and Guo, J. (2011). Posttranscriptional mechanisms in controlling eukaryotic circadian rhythms. FEBS Lett. 585, 1400-1405. doi: 10. 1016/j. febslet. 2011. 03. 018.
    • (2011) FEBS Lett , vol.585 , pp. 1400-1405
    • Zhang, L.1    Weng, W.2    Guo, J.3
  • 167
    • 0037022664 scopus 로고    scopus 로고
    • Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform
    • Zhang, N., Kallis, R. P., Ewy, R. G., and Portis, A. R. (2002). Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform. Proc. Natl. Acad. Sci. U. S. A. 99, 3330-3334. doi: 10. 1073/pnas. 042529999.
    • (2002) Proc. Natl. Acad. Sci. U.S.A , vol.99 , pp. 3330-3334
    • Zhang, N.1    Kallis, R.P.2    Ewy, R.G.3    Portis, A.R.4
  • 168
    • 2942692262 scopus 로고    scopus 로고
    • The circadian RNA-binding protein CHLAMY 1 represents a novel type heteromer of RNA recognition motif and lysine homology domain-containing subunits
    • Zhao, B., Schneid, C., Iliev, D., Schmidt, E. M., Wagner, V., Wollnik, F., et al. (2004). The circadian RNA-binding protein CHLAMY 1 represents a novel type heteromer of RNA recognition motif and lysine homology domain-containing subunits. Eukaryot. Cell 3, 815-825. doi: 10. 1128/EC. 3. 3. 815-825. 2004.
    • (2004) Eukaryot. Cell , vol.3 , pp. 815-825
    • Zhao, B.1    Schneid, C.2    Iliev, D.3    Schmidt, E.M.4    Wagner, V.5    Wollnik, F.6
  • 169
    • 15444341305 scopus 로고    scopus 로고
    • Effects of synergistic signaling by phytochrome A and cryptochrome 1 on circadian clock-regulated catalase expression
    • Zhong, H. H., Resnick, A. S., Straume, M., and McClung, C. R. (1997). Effects of synergistic signaling by phytochrome A and cryptochrome 1 on circadian clock-regulated catalase expression. Plant Cell 9, 947-955. doi: 10. 1105/tpc. 9. 6. 947.
    • (1997) Plant Cell , vol.9 , pp. 947-955
    • Zhong, H.H.1    Resnick, A.S.2    Straume, M.3    McClung, C.R.4
  • 170
    • 79551653792 scopus 로고    scopus 로고
    • Sense and antisense transcripts of convergent gene pairs in Arabidopsis thaliana can share a common polyadenylation region
    • Zubko, E., Kunova, A., and Meyer, P. (2011). Sense and antisense transcripts of convergent gene pairs in Arabidopsis thaliana can share a common polyadenylation region. PLoS ONE 6: e16769. doi: 10. 1371/journal. pone. 0016769.
    • (2011) PLoS ONE , vol.6
    • Zubko, E.1    Kunova, A.2    Meyer, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.