-
1
-
-
17844406887
-
Exon repression by polypyrimidine tract binding protein
-
Amir-Ahmady, B., Boutz, P. L., Markovtsov, V., Phillips, M. L., and Black, D. L. (2005). Exon repression by polypyrimidine tract binding protein. RNA 11, 699-716.
-
(2005)
RNA
, vol.11
, pp. 699-716
-
-
Amir-Ahmady, B.1
Boutz, P.L.2
Markovtsov, V.3
Phillips, M.L.4
Black, D.L.5
-
2
-
-
39749187574
-
Structure-function relationships of the polypyrimidine tract binding protein
-
Auweter, S. D., and Allain, F. H. (2008). Structure-function relationships of the polypyrimidine tract binding protein. Cell. Mol. Life Sci. 65, 516-527.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 516-527
-
-
Auweter, S.D.1
Allain, F.H.2
-
3
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
-
Barbazuk, W. B., Fu, Y., and Mcginnis, K. M. (2008). Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 18, 1381-1392.
-
(2008)
Genome Res.
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
4
-
-
58849127937
-
Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation
-
Besse, F., Lopez De Quinto, S., Marchand, V., Trucco, A., and Ephrussi, A. (2009). Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation. Genes Dev. 23, 195-207.
-
(2009)
Genes Dev.
, vol.23
, pp. 195-207
-
-
Besse, F.1
De Quinto Lopez, S.2
Marchand, V.3
Trucco, A.4
Ephrussi, A.5
-
5
-
-
34347384211
-
A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons
-
Boutz, P. L., Stoilov, P., Li, Q., Lin, C. H., Chawla, G., Ostrow, K., Shiue, L., Ares, M. Jr., and Black, D. L. (2007). A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes Dev. 21, 1636-1652.
-
(2007)
Genes Dev.
, vol.21
, pp. 1636-1652
-
-
Boutz, P.L.1
Stoilov, P.2
Li, Q.3
Lin, C.H.4
Chawla, G.5
Ostrow, K.6
Shiue, L.7
Ares Jr., M.8
Black, D.L.9
-
6
-
-
42149149278
-
Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis
-
Bove, J., Kim, C. Y., Gibson, C. A., and Assmann, S. M. (2008). Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Plant Mol. Biol. 67, 71-88.
-
(2008)
Plant Mol. Biol.
, vol.67
, pp. 71-88
-
-
Bove, J.1
Kim, C.Y.2
Gibson, C.A.3
Assmann, S.M.4
-
7
-
-
0037083819
-
SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D
-
Caputi, M., and Zahler, A. M. (2002). SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21, 845-855.
-
(2002)
EMBO J.
, vol.21
, pp. 845-855
-
-
Caputi, M.1
Zahler, A.M.2
-
8
-
-
78751607537
-
Identification of the methylation preference region in heterogeneous nuclear ribonucleoprotein K by protein arginine methyltransferase 1 and its implication in regulating nuclear/cytoplasmic distribution
-
Chang, Y. I., Hsu, S. C., Chau, G. Y., Huang, C. Y., Sung, J. S., Hua, W. K., and Lin, W. J. (2011). Identification of the methylation preference region in heterogeneous nuclear ribonucleoprotein K by protein arginine methyltransferase 1 and its implication in regulating nuclear/cytoplasmic distribution. Biochem. Biophys. Res. Commun. 404, 865-869.
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.404
, pp. 865-869
-
-
Chang, Y.I.1
Hsu, S.C.2
Chau, G.Y.3
Huang, C.Y.4
Sung, J.S.5
Hua, W.K.6
Lin, W.J.7
-
9
-
-
70350569286
-
Mechanisms of alternative splicing regulation: Insights from molecular and genomics approaches
-
Chen, M., and Manley, J. L. (2009). Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches. Nat. Rev. Mol. Cell Biol. 10, 741-754.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 741-754
-
-
Chen, M.1
Manley, J.L.2
-
10
-
-
75149150660
-
HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer
-
David, C. J., Chen, M., Assanah, M., Canoll, P., and Manley, J. L. (2010). HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer. Nature 463, 364-368.
-
(2010)
Nature
, vol.463
, pp. 364-368
-
-
David, C.J.1
Chen, M.2
Assanah, M.3
Canoll, P.4
Manley, J.L.5
-
11
-
-
78650488766
-
Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing
-
Deng, X., Gu, L., Liu, C., Lu, T., Lu, F., Lu, Z., Cui, P., Pei, Y., Wang, B., Hu, S., and Cao, X. (2010). Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc. Natl. Acad. Sci. U.S.A. 107, 19114-19119.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 19114-19119
-
-
Deng, X.1
Gu, L.2
Liu, C.3
Lu, T.4
Lu, F.5
Lu, Z.6
Cui, P.7
Pei, Y.8
Wang, B.9
Hu, S.10
Cao, X.11
-
12
-
-
76249102027
-
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
-
Du, H., Cline, M. S., Osborne, R. J., Tuttle, D. L., Clark, T. A., Donohue, J. P., Hall, M. P., Shiue, L., Swanson, M. S., Thornton, C. A., and Ares, M. Jr. (2010). Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy. Nat. Struct. Mol. Biol. 17, 187-193.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 187-193
-
-
Du, H.1
Cline, M.S.2
Osborne, R.J.3
Tuttle, D.L.4
Clark, T.A.5
Donohue, J.P.6
Hall, M.P.7
Shiue, L.8
Swanson, M.S.9
Thornton, C.A.10
Ares Jr., M.11
-
13
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin, S. A., Priest, H. D., Givan, S. A., Shen, R., Bryant, D. W., Fox, S. E., Wong, W. K., and Mockler, T. C. (2010). Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 20, 45-58.
-
(2010)
Genome Res.
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.4
Bryant, D.W.5
Fox, S.E.6
Wong, W.K.7
Mockler, T.C.8
-
14
-
-
34249064705
-
A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity
-
Fu, Z. Q., Guo, M., Jeong, B. R., Tian, F., Elthon, T. E., Cerny, R. L., Staiger, D., and Alfano, J. R. (2007). A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. Nature 447, 284-288.
-
(2007)
Nature
, vol.447
, pp. 284-288
-
-
Fu, Z.Q.1
Guo, M.2
Jeong, B.R.3
Tian, F.4
Elthon, T.E.5
Cerny, R.L.6
Staiger, D.7
Alfano, J.R.8
-
15
-
-
0030960588
-
Interaction between the human nuclear cap-binding protein complex and hnRNP F
-
Gamberi, C., Izaurralde, E., Beisel, C., and Mattaj, I. W. (1997). Interaction between the human nuclear cap-binding protein complex and hnRNP F. Mol. Cell. Biol. 17, 2587-2597.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 2587-2597
-
-
Gamberi, C.1
Izaurralde, E.2
Beisel, C.3
Mattaj, I.W.4
-
16
-
-
62549099549
-
A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex
-
Ham, B. K., Brandom, J. L., Xoconostle-Cazares, B., Ringgold, V., Lough, T. J., and Lucas, W. J. (2009). A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex. Plant Cell 21, 197-215.
-
(2009)
Plant Cell
, vol.21
, pp. 197-215
-
-
Ham, B.K.1
Brandom, J.L.2
Xoconostle-Cazares, B.3
Ringgold, V.4
Lough, T.J.5
Lucas, W.J.6
-
17
-
-
77956687928
-
Functional diversity of the hnRNPs: Past, present and perspectives
-
Han, S. P., Tang, Y. H., and Smith, R. (2010). Functional diversity of the hnRNPs: past, present and perspectives. Biochem. J. 430, 379-392.
-
(2010)
Biochem. J.
, vol.430
, pp. 379-392
-
-
Han, S.P.1
Tang, Y.H.2
Smith, R.3
-
18
-
-
74549123779
-
HnRNP L-mediated regulation of mammalian alternative splicing by interference with splice site recognition
-
Heiner, M., Hui, J., Schreiner, S., Hung, L. H., and Bindereif, A. (2010). HnRNP L-mediated regulation of mammalian alternative splicing by interference with splice site recognition. RNA Biol. 7, 56-64.
-
(2010)
RNA Biol.
, vol.7
, pp. 56-64
-
-
Heiner, M.1
Hui, J.2
Schreiner, S.3
Hung, L.H.4
Bindereif, A.5
-
19
-
-
0035282916
-
Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system
-
Hirose, T., and Sugiura, M. (2001). Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system. EMBO J.20, 1144-1152.
-
(2001)
EMBO J.
, vol.20
, pp. 1144-1152
-
-
Hirose, T.1
Sugiura, M.2
-
20
-
-
0037217365
-
HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats
-
Hui, J., Stangl, K., Lane, W. S., and Bindereif, A. (2003). HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat. Struct. Biol. 10, 33-37.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 33-37
-
-
Hui, J.1
Stangl, K.2
Lane, W.S.3
Bindereif, A.4
-
21
-
-
23744492690
-
Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition
-
Izquierdo, J. M., Majos, N., Bonnal, S., Martinez, C., Castelo, R., Guigo, R., Bilbao, D., and Valcarcel, J. (2005). Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. Mol. Cell 19, 475-484.
-
(2005)
Mol. Cell
, vol.19
, pp. 475-484
-
-
Izquierdo, J.M.1
Majos, N.2
Bonnal, S.3
Martinez, C.4
Castelo, R.5
Guigo, R.6
Bilbao, D.7
Valcarcel, J.8
-
22
-
-
83355169694
-
Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity
-
Jeong, B. R., Lin, Y., Joe, A., Guo, M., Korneli, C., Yang, H., Wang, P., Yu, M., Cerny, R. L., Staiger, D., Alfano, J. R., and Xu, Y. (2011). Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity. J. Biol. Chem. 286, 43272-43281.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 43272-43281
-
-
Jeong, B.R.1
Lin, Y.2
Joe, A.3
Guo, M.4
Korneli, C.5
Yang, H.6
Wang, P.7
Yu, M.8
Cerny, R.L.9
Staiger, D.10
Alfano, J.R.11
Xu, Y.12
-
23
-
-
51249095587
-
Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death
-
Kim, C. Y., Bove, J., and Assmann, S. M. (2008a). Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol. 180, 57-70.
-
(2008)
New Phytol.
, vol.180
, pp. 57-70
-
-
Kim, C.Y.1
Bove, J.2
Assmann, S.M.3
-
24
-
-
47749089005
-
Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing inArabidopsis thaliana
-
Kim, J. S., Jung, H. J., Lee, H. J., Kim, K. A., Goh, C. H., Woo, Y., Oh, S. H., Han, Y. S., and Kang, H. (2008b). Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing inArabidopsis thaliana. Plant J. 55, 455-466.
-
(2008)
Plant J.
, vol.55
, pp. 455-466
-
-
Kim, J.S.1
Jung, H.J.2
Lee, H.J.3
Kim, K.A.4
Goh, C.H.5
Woo, Y.6
Oh, S.H.7
Han, Y.S.8
Kang, H.9
-
25
-
-
77954387023
-
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
Konig, J., Zarnack, K., Rot, G., Curk, T., Kayikci, M., Zupan, B., Turner, D. J., Luscombe, N. M., and Ule, J. (2010). iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat. Struct. Mol. Biol.17, 909-915.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 909-915
-
-
Konig, J.1
Zarnack, K.2
Rot, G.3
Curk, T.4
Kayikci, M.5
Zupan, B.6
Turner, D.J.7
Luscombe, N.M.8
Ule, J.9
-
26
-
-
0036264995
-
UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants
-
Lambermon, M. H., Fu, Y., Wieczorek Kirk, D. A., Dupasquier, M., Filipowicz, W., and Lorkovic, Z. J. (2002). UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol. Cell. Biol. 22, 4346-4357.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 4346-4357
-
-
Lambermon, M.H.1
Fu, Y.2
Wieczorek Kirk, D.A.3
Dupasquier, M.4
Filipowicz, W.5
Lorkovic, Z.J.6
-
27
-
-
0034599523
-
UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation
-
Lambermon, M. H., Simpson, G. G., Wieczorek Kirk, D. A., Hemmings-Mieszczak, M., Klahre, U., and Filipowicz, W. (2000). UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation. EMBO J. 19, 1638-1649.
-
(2000)
EMBO J.
, vol.19
, pp. 1638-1649
-
-
Lambermon, M.H.1
Simpson, G.G.2
Wieczorek Kirk, D.A.3
Hemmings-Mieszczak, M.4
Klahre, U.5
Filipowicz, W.6
-
28
-
-
79551620582
-
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1
-
doi:10.1371/journal.pone.0016592
-
Latrasse, D., Germann, S., Houba-Herin, N., Dubois, E., Bui-Prodhomme, D., Hourcade, D., Juul-Jensen, T., Le Roux, C., Majira, A., Simoncello, N., Granier, F., Taconnat, L., Renou, J. P., and Gaudin, V. (2011). Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS ONE 6, e16592. doi:10.1371/journal.pone.0016592
-
(2011)
PLoS ONE
, vol.6
-
-
Latrasse, D.1
Germann, S.2
Houba-Herin, N.3
Dubois, E.4
Bui-Prodhomme, D.5
Hourcade, D.6
Juul-Jensen, T.7
Le Roux, C.8
Majira, A.9
Simoncello, N.10
Granier, F.11
Taconnat, L.12
Renou, J.P.13
Gaudin, V.14
-
29
-
-
64749109224
-
Minireview: Protein arginine methylation of nonhistone proteins in transcriptional regulation
-
Lee, Y. H., and Stallcup, M. R. (2009). Minireview: protein arginine methylation of nonhistone proteins in transcriptional regulation. Mol. Endocrinol. 23, 425-433.
-
(2009)
Mol. Endocrinol.
, vol.23
, pp. 425-433
-
-
Lee, Y.H.1
Stallcup, M.R.2
-
30
-
-
77957794732
-
Tobacco GTBP1, a homolog of human heterogeneous nuclear ribonucleoprotein, protects telomeres from aberrant homologous recombination
-
Lee, Y. W., and Kim, W. T. (2010). Tobacco GTBP1, a homolog of human heterogeneous nuclear ribonucleoprotein, protects telomeres from aberrant homologous recombination. Plant Cell 22, 2781-2795.
-
(2010)
Plant Cell
, vol.22
, pp. 2781-2795
-
-
Lee, Y.W.1
Kim, W.T.2
-
31
-
-
2442541263
-
Determinants of plant U12-dependent intron splicing efficiency
-
Lewandowska, D., Simpson, C. G., Clark, G. P., Jennings, N. S., Barciszewska-Pacak, M., Lin, C. F., Makalowski, W., Brown, J. W., and Jarmolowski, A. (2004). Determinants of plant U12-dependent intron splicing efficiency. Plant Cell 16, 1340-1352.
-
(2004)
Plant Cell
, vol.16
, pp. 1340-1352
-
-
Lewandowska, D.1
Simpson, C.G.2
Clark, G.P.3
Jennings, N.S.4
Barciszewska-Pacak, M.5
Lin, C.F.6
Makalowski, W.7
Brown, J.W.8
Jarmolowski, A.9
-
32
-
-
0037102432
-
Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase
-
Li, J., Kinoshita, T., Pandey, S., Ng, C. K., Gygi, S. P., Shimazaki, K., and Assmann, S. M. (2002). Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase. Nature 418, 793-797.
-
(2002)
Nature
, vol.418
, pp. 793-797
-
-
Li, J.1
Kinoshita, T.2
Pandey, S.3
Ng, C.K.4
Gygi, S.P.5
Shimazaki, K.6
Assmann, S.M.7
-
33
-
-
79959557634
-
CmRBP50 protein phosphorylation is essential for assembly of a stable phloem-mobile high-affinity ribonucleoprotein complex
-
Li, P., Ham, B. K., and Lucas, W. J. (2011). CmRBP50 protein phosphorylation is essential for assembly of a stable phloem-mobile high-affinity ribonucleoprotein complex. J. Biol. Chem. 286, 23142-23149.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 23142-23149
-
-
Li, P.1
Ham, B.K.2
Lucas, W.J.3
-
34
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi, D. D., Mele, A., Fak, J. J., Ule, J., Kayikci, M., Chi, S. W., Clark, T. A., Schweitzer, A. C., Blume, J. E., Wang, X., Darnell, J. C., and Darnell, R. B. (2008). HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature 456, 464-469.
-
(2008)
Nature
, vol.456
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
Darnell, J.C.11
Darnell, R.B.12
-
35
-
-
12144286231
-
A newArabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C
-
Lim, M. H., Kim, J., Kim, Y. S., Chung, K. S., Seo, Y. H., Lee, I., Hong, C. B., Kim, H. J., and Park, C. M. (2004). A newArabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C. Plant Cell 16, 731-740.
-
(2004)
Plant Cell
, vol.16
, pp. 731-740
-
-
Lim, M.H.1
Kim, J.2
Kim, Y.S.3
Chung, K.S.4
Seo, Y.H.5
Lee, I.6
Hong, C.B.7
Kim, H.J.8
Park, C.M.9
-
36
-
-
0029061736
-
Phosphorylation of a chloroplast RNA-binding protein changes its affinity to RNA
-
Lisitsky, I., and Schuster, G. (1995). Phosphorylation of a chloroplast RNA-binding protein changes its affinity to RNA. Nucleic Acids Res. 23, 2506-2511.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2506-2511
-
-
Lisitsky, I.1
Schuster, G.2
-
37
-
-
77956342570
-
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
-
Llorian, M., Schwartz, S., Clark, T. A., Hollander, D., Tan, L. Y., Spellman, R., Gordon, A., Schweitzer, A. C., De La Grange, P., Ast, G., and Smith, C. W. (2010). Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB. Nat. Struct. Mol. Biol. 17, 1114-1123.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1114-1123
-
-
Llorian, M.1
Schwartz, S.2
Clark, T.A.3
Hollander, D.4
Tan, L.Y.5
Spellman, R.6
Gordon, A.7
Schweitzer, A.C.8
De La Grange, P.9
Ast, G.10
Smith, C.W.11
-
38
-
-
0033740021
-
RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells
-
Lorkovic, Z. J., Wieczorek Kirk, D. A., Klahre, U., Hemmings-Mieszczak, M., and Filipowicz, W. (2000). RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. RNA6, 1610-1624.
-
(2000)
RNA
, vol.6
, pp. 1610-1624
-
-
Lorkovic, Z.J.1
Wieczorek Kirk, D.A.2
Klahre, U.3
Hemmings-Mieszczak, M.4
Filipowicz, W.5
-
39
-
-
0032938851
-
Polypyrimidine tract-binding protein positively regulates inclusion of an alternative 3′-terminal exon
-
Lou, H., Helfman, D. M., Gagel, R. F., and Berget, S. M. (1999). Polypyrimidine tract-binding protein positively regulates inclusion of an alternative 3′-terminal exon. Mol. Cell. Biol. 19, 78-85.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 78-85
-
-
Lou, H.1
Helfman, D.M.2
Gagel, R.F.3
Berget, S.M.4
-
40
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco, R. F., Pan, Q., Tominaga, K., Blencowe, B. J., Pereira-Smith, O. M., and Misteli, T. (2010). Regulation of alternative splicing by histone modifications. Science 327, 996-1000.
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
Misteli, T.6
-
41
-
-
79960646885
-
Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF
-
Mackereth, C. D., Madl, T., Bonnal, S., Simon, B., Zanier, K., Gasch, A., Rybin, V., Valcarcel, J., and Sattler, M. (2011). Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF. Nature 475, 408-411.
-
(2011)
Nature
, vol.475
, pp. 408-411
-
-
McKereth, C.D.1
Madl, T.2
Bonnal, S.3
Simon, B.4
Zanier, K.5
Gasch, A.6
Rybin, V.7
Valcarcel, J.8
Sattler, M.9
-
42
-
-
34547212309
-
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing
-
Makeyev, E. V., Zhang, J., Carrasco, M. A., and Maniatis, T. (2007). The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol. Cell 27, 435-448.
-
(2007)
Mol. Cell
, vol.27
, pp. 435-448
-
-
Makeyev, E.V.1
Zhang, J.2
Carrasco, M.A.3
Maniatis, T.4
-
43
-
-
0033800453
-
Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein
-
Markovtsov, V., Nikolic, J. M., Goldman, J. A., Turck, C. W., Chou, M. Y., and Black, D. L. (2000). Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol. Cell. Biol. 20, 7463-7479.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7463-7479
-
-
Markovtsov, V.1
Nikolic, J.M.2
Goldman, J.A.3
Turck, C.W.4
Chou, M.Y.5
Black, D.L.6
-
44
-
-
42449152457
-
hnRNP proteins and splicing control
-
Martinez-Contreras, R., Cloutier, P., Shkreta, L., Fisette, J. F., Revil, T., and Chabot, B. (2007). hnRNP proteins and splicing control. Adv. Exp. Med. Biol. 623, 123-147.
-
(2007)
Adv. Exp. Med. Biol.
, vol.623
, pp. 123-147
-
-
Martinez-Contreras, R.1
Cloutier, P.2
Shkreta, L.3
Fisette, J.F.4
Revil, T.5
Chabot, B.6
-
45
-
-
33244483620
-
Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing
-
doi:10.1371/journal.pbio.0040021
-
Martinez-Contreras, R., Fisette, J. F., Nasim, F. U., Madden, R., Cordeau, M., and Chabot, B. (2006). Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4, e21. doi:10.1371/journal.pbio.0040021
-
(2006)
PLoS Biol.
, vol.4
-
-
Martinez-Contreras, R.1
Fisette, J.F.2
Nasim, F.U.3
Madden, R.4
Cordeau, M.5
Chabot, B.6
-
46
-
-
4344596213
-
Regulation of flowering time in Arabidopsis by K homology domain proteins
-
Mockler, T. C., Yu, X., Shalitin, D., Parikh, D., Michael, T. P., Liou, J., Huang, J., Smith, Z., Alonso, J. M., Ecker, J. R., Chory, J., and Lin, C. (2004). Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc. Natl. Acad. Sci. U.S.A. 101, 12759-12764.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 12759-12764
-
-
Mockler, T.C.1
Yu, X.2
Shalitin, D.3
Parikh, D.4
Michael, T.P.5
Liou, J.6
Huang, J.7
Smith, Z.8
Alonso, J.M.9
Ecker, J.R.10
Chory, J.11
Lin, C.12
-
47
-
-
0035476679
-
SMN interacts with a novel family of hnRNP and spliceosomal proteins
-
Mourelatos, Z., Abel, L., Yong, J., Kataoka, N., and Dreyfuss, G. (2001). SMN interacts with a novel family of hnRNP and spliceosomal proteins. EMBO J. 20, 5443-5452.
-
(2001)
EMBO J.
, vol.20
, pp. 5443-5452
-
-
Mourelatos, Z.1
Abel, L.2
Yong, J.3
Kataoka, N.4
Dreyfuss, G.5
-
48
-
-
0035808422
-
Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma
-
Nakamura, T., Ohta, M., Sugiura, M., and Sugita, M. (2001). Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J. Biol. Chem. 276, 147-152.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 147-152
-
-
Nakamura, T.1
Ohta, M.2
Sugiura, M.3
Sugita, M.4
-
49
-
-
0031711073
-
Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex
-
Neubauer, G., King, A., Rappsilber, J., Calvio, C., Watson, M., Ajuh, P., Sleeman, J., Lamond, A., and Mann, M. (1998). Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. Nat. Genet. 20, 46-50.
-
(1998)
Nat. Genet.
, vol.20
, pp. 46-50
-
-
Neubauer, G.1
King, A.2
Rappsilber, J.3
Calvio, C.4
Watson, M.5
Ajuh, P.6
Sleeman, J.7
Lamond, A.8
Mann, M.9
-
50
-
-
25444486174
-
Structure of PTB bound to RNA: Specific binding and implications for splicing regulation
-
Oberstrass, F. C., Auweter, S. D., Erat, M., Hargous, Y., Henning, A., Wenter, P., Reymond, L., Amir-Ahmady, B., Pitsch, S., Black, D. L., and Allain, F. H. (2005). Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science 309, 2054-2057.
-
(2005)
Science
, vol.309
, pp. 2054-2057
-
-
Oberstrass, F.C.1
Auweter, S.D.2
Erat, M.3
Hargous, Y.4
Henning, A.5
Wenter, P.6
Reymond, L.7
Amir-Ahmady, B.8
Pitsch, S.9
Black, D.L.10
Allain, F.H.11
-
51
-
-
79957834859
-
Pause locally, splice globally
-
Oesterreich, F. C., Bieberstein, N., and Neugebauer, K. M. (2011). Pause locally, splice globally. Trends Cell Biol. 21, 328-335.
-
(2011)
Trends Cell Biol.
, vol.21
, pp. 328-335
-
-
Oesterreich, F.C.1
Bieberstein, N.2
Neugebauer, K.M.3
-
52
-
-
70350433635
-
Cooperative-binding and splicing-repressive properties of hnRNP A1
-
Okunola, H. L., and Krainer, A. R. (2009). Cooperative-binding and splicing-repressive properties of hnRNP A1. Mol. Cell. Biol. 29, 5620-5631.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 5620-5631
-
-
Okunola, H.L.1
Krainer, A.R.2
-
53
-
-
36849015934
-
A regulator of Dscam mutually exclusive splicing fidelity
-
Olson, S., Blanchette, M., Park, J., Savva, Y., Yeo, G. W., Yeakley, J. M., Rio, D. C., and Graveley, B. R. (2007). A regulator of Dscam mutually exclusive splicing fidelity. Nat. Struct. Mol. Biol. 14, 1134-1140.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1134-1140
-
-
Olson, S.1
Blanchette, M.2
Park, J.3
Savva, Y.4
Yeo, G.W.5
Yeakley, J.M.6
Rio, D.C.7
Graveley, B.R.8
-
54
-
-
34447525136
-
hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c
-
Paradis, C., Cloutier, P., Shkreta, L., Toutant, J., Klarskov, K., and Chabot, B. (2007). hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13, 1287-1300.
-
(2007)
RNA
, vol.13
, pp. 1287-1300
-
-
Paradis, C.1
Cloutier, P.2
Shkreta, L.3
Toutant, J.4
Klarskov, K.5
Chabot, B.6
-
55
-
-
34547881914
-
Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis
-
Pei, Y., Niu, L., Lu, F., Liu, C., Zhai, J., Kong, X., and Cao, X. (2007). Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiol. 144, 1913-1923.
-
(2007)
Plant Physiol.
, vol.144
, pp. 1913-1923
-
-
Pei, Y.1
Niu, L.2
Lu, F.3
Liu, C.4
Zhai, J.5
Kong, X.6
Cao, X.7
-
56
-
-
34250813107
-
Alternative splicing of pre-messenger RNAs in plants in the genomic era
-
Reddy, A. S. (2007). Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu. Rev. Plant Biol. 58, 267-294.
-
(2007)
Annu. Rev. Plant Biol.
, vol.58
, pp. 267-294
-
-
Reddy, A.S.1
-
57
-
-
33745930546
-
Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid
-
Riera, M., Redko, Y., and Leung, J. (2006). Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid. FEBS Lett. 580, 4160-4165.
-
(2006)
FEBS Lett.
, vol.580
, pp. 4160-4165
-
-
Riera, M.1
Redko, Y.2
Leung, J.3
-
58
-
-
77955436234
-
Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualization
-
Robida, M., Sridharan, V., Morgan, S., Rao, T., and Singh, R. (2010). Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualization. Proc. Natl. Acad. Sci. U.S.A. 107, 12570-12575.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 12570-12575
-
-
Robida, M.1
Sridharan, V.2
Morgan, S.3
Rao, T.4
Singh, R.5
-
59
-
-
33644861782
-
A splicing repressor domain in polypyrimidine tract-binding protein
-
Robinson, F., and Smith, C. W. (2006). A splicing repressor domain in polypyrimidine tract-binding protein. J. Biol. Chem. 281, 800-806.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 800-806
-
-
Robinson, F.1
Smith, C.W.2
-
60
-
-
78149282260
-
A methyl transferase links the circadian clock to the regulation of alternative splicing
-
Sanchez, S. E., Petrillo, E., Beckwith, E. J., Zhang, X., Rugnone, M. L., Hernando, C. E., Cuevas, J. C., Godoy Herz, M. A., Depetris-Chauvin, A., Simpson, C. G., Brown, J. W., Cerdan, P. D., Borevitz, J. O., Mas, P., Ceriani, M. F., Kornblihtt, A. R., and Yanovsky, M. J. (2010). A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468, 112-116.
-
(2010)
Nature
, vol.468
, pp. 112-116
-
-
Sanchez, S.E.1
Petrillo, E.2
Beckwith, E.J.3
Zhang, X.4
Rugnone, M.L.5
Hernando, C.E.6
Cuevas, J.C.7
Godoy Herz, M.A.8
Depetris-Chauvin, A.9
Simpson, C.G.10
Brown, J.W.11
Cerdan, P.D.12
Borevitz, J.O.13
Mas, P.14
Ceriani, M.F.15
Kornblihtt, A.R.16
Yanovsky, M.J.17
-
61
-
-
33845225902
-
The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the beta-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit
-
Sauliere, J., Sureau, A., Expert-Bezancon, A., and Marie, J. (2006). The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the beta-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit. Mol. Cell. Biol. 26, 8755-8769.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 8755-8769
-
-
Sauliere, J.1
Sureau, A.2
Expert-Bezancon, A.3
Marie, J.4
-
62
-
-
49349112872
-
Polypyrimidine-tract-binding protein: A multifunctional RNA-binding protein
-
Sawicka, K., Bushell, M., Spriggs, K. A., and Willis, A. E. (2008). Polypyrimidine-tract-binding protein: a multifunctional RNA-binding protein. Biochem. Soc. Trans. 36, 641-647.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 641-647
-
-
Sawicka, K.1
Bushell, M.2
Spriggs, K.A.3
Willis, A.E.4
-
63
-
-
38649111293
-
Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana
-
Schmitz, R. J., Sung, S., and Amasino, R. M. (2008). Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 105, 411-416.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 411-416
-
-
Schmitz, R.J.1
Sung, S.2
Amasino, R.M.3
-
64
-
-
58749102066
-
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
-
Schoning, J. C., Streitner, C., Meyer, I. M., Gao, Y., and Staiger, D. (2008). Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res. 36, 6977-6987.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6977-6987
-
-
Schoning, J.C.1
Streitner, C.2
Meyer, I.M.3
Gao, Y.4
Staiger, D.5
-
65
-
-
36849007471
-
Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation
-
Schoning, J. C., Streitner, C., Page, D. R., Hennig, S., Uchida, K., Wolf, E., Furuya, M., and Staiger, D. (2007). Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J. 52, 1119-1130.
-
(2007)
Plant J.
, vol.52
, pp. 1119-1130
-
-
Schoning, J.C.1
Streitner, C.2
Page, D.R.3
Hennig, S.4
Uchida, K.5
Wolf, E.6
Furuya, M.7
Staiger, D.8
-
66
-
-
0025775279
-
Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein
-
Schuster, G., and Gruissem, W. (1991). Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein. EMBO J. 10, 1493-1502.
-
(1991)
EMBO J.
, vol.10
, pp. 1493-1502
-
-
Schuster, G.1
Gruissem, W.2
-
67
-
-
33845799903
-
Polycomb silencing mechanisms and the management of genomic programmes
-
Schwartz, Y. B., and Pirrotta, V. (2007). Polycomb silencing mechanisms and the management of genomic programmes. Nat. Rev. Genet. 8, 9-22.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 9-22
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
68
-
-
23744484618
-
Polypyrimidine tract binding protein blocks the 5′ splice site-dependent assembly of U2AF and the prespliceosomal E complex
-
Sharma, S., Falick, A. M., and Black, D. L. (2005). Polypyrimidine tract binding protein blocks the 5′ splice site-dependent assembly of U2AF and the prespliceosomal E complex. Mol. Cell 19, 485-496.
-
(2005)
Mol. Cell
, vol.19
, pp. 485-496
-
-
Sharma, S.1
Falick, A.M.2
Black, D.L.3
-
69
-
-
38849187162
-
Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome
-
Sharma, S., Kohlstaedt, L. A., Damianov, A., Rio, D. C., and Black, D. L. (2008). Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome. Nat. Struct. Mol. Biol. 15, 183-191.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 183-191
-
-
Sharma, S.1
Kohlstaedt, L.A.2
Damianov, A.3
Rio, D.C.4
Black, D.L.5
-
70
-
-
0345874787
-
Dual functionality of a plant U-rich intronic sequence element
-
Simpson, C. G., Jennings, S. N., Clark, G. P., Thow, G., and Brown, J. W. (2004). Dual functionality of a plant U-rich intronic sequence element. Plant J. 37, 82-91.
-
(2004)
Plant J.
, vol.37
, pp. 82-91
-
-
Simpson, C.G.1
Jennings, S.N.2
Clark, G.P.3
Thow, G.4
Brown, J.W.5
-
71
-
-
0029055472
-
Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins
-
Singh, R., Valcarcel, J., and Green, M. R. (1995). Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science 268, 1173-1176.
-
(1995)
Science
, vol.268
, pp. 1173-1176
-
-
Singh, R.1
Valcarcel, J.2
Green, M.R.3
-
72
-
-
34547205013
-
Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1
-
Spellman, R., Llorian, M., and Smith, C. W. (2007). Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1. Mol. Cell 27, 420-434.
-
(2007)
Mol. Cell
, vol.27
, pp. 420-434
-
-
Spellman, R.1
Llorian, M.2
Smith, C.W.3
-
73
-
-
32344437827
-
Novel modes of splicing repression by PTB
-
Spellman, R., and Smith, C. W. (2006). Novel modes of splicing repression by PTB. Trends Biochem. Sci. 31, 73-76.
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 73-76
-
-
Spellman, R.1
Smith, C.W.2
-
74
-
-
0037266853
-
The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA
-
Staiger, D., Zecca, L., Wieczorek Kirk, D. A., Apel, K., and Eckstein, L. (2003). The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA. Plant J. 33, 361-371.
-
(2003)
Plant J.
, vol.33
, pp. 361-371
-
-
Staiger, D.1
Zecca, L.2
Wieczorek Kirk, D.A.3
Apel, K.4
Eckstein, L.5
-
75
-
-
78649550144
-
Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control
-
Stauffer, E., Westermann, A., Wagner, G., and Wachter, A. (2010). Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control. Plant J. 64, 243-255.
-
(2010)
Plant J.
, vol.64
, pp. 243-255
-
-
Stauffer, E.1
Westermann, A.2
Wagner, G.3
Wachter, A.4
-
76
-
-
53549122472
-
The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana
-
Streitner, C., Danisman, S., Wehrle, F., Schoning, J. C., Alfano, J. R., and Staiger, D. (2008). The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana. Plant J. 56, 239-250.
-
(2008)
Plant J.
, vol.56
, pp. 239-250
-
-
Streitner, C.1
Danisman, S.2
Wehrle, F.3
Schoning, J.C.4
Alfano, J.R.5
Staiger, D.6
-
77
-
-
77957803561
-
Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7
-
doi:10.1186/1471-2229-10-221
-
Streitner, C., Hennig, L., Korneli, C., and Staiger, D. (2010). Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7. BMC Plant Biol. 10, 221. doi:10.1186/1471-2229-10-221
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 221
-
-
Streitner, C.1
Hennig, L.2
Korneli, C.3
Staiger, D.4
-
78
-
-
33745622860
-
Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription
-
Swinburne, I. A., Meyer, C. A., Liu, X. S., Silver, P. A., and Brodsky, A. S. (2006). Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription. Genome Res. 16, 912-921.
-
(2006)
Genome Res.
, vol.16
, pp. 912-921
-
-
Swinburne, I.A.1
Meyer, C.A.2
Liu, X.S.3
Silver, P.A.4
Brodsky, A.S.5
-
79
-
-
77953796346
-
Chloroplast RNA-binding proteins: Repair and regulation of chloroplast transcripts
-
Tillich, M., Beick, S., and Schmitz-Linneweber, C. (2010). Chloroplast RNA-binding proteins: repair and regulation of chloroplast transcripts. RNA Biol. 7, 172-178.
-
(2010)
RNA Biol.
, vol.7
, pp. 172-178
-
-
Tillich, M.1
Beick, S.2
Schmitz-Linneweber, C.3
-
80
-
-
65249117747
-
Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs
-
Tillich, M., Hardel, S. L., Kupsch, C., Armbruster, U., Delannoy, E., Gualberto, J. M., Lehwark, P., Leister, D., Small, I. D., and Schmitz-Linneweber, C. (2009). Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs. Proc. Natl. Acad. Sci. U.S.A. 106, 6002-6007.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 6002-6007
-
-
Tillich, M.1
Hardel, S.L.2
Kupsch, C.3
Armbruster, U.4
Delannoy, E.5
Gualberto, J.M.6
Lehwark, P.7
Leister, D.8
Small, I.D.9
Schmitz-Linneweber, C.10
-
81
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule, J., Stefani, G., Mele, A., Ruggiu, M., Wang, X., Taneri, B., Gaasterland, T., Blencowe, B. J., and Darnell, R. B. (2006). An RNA map predicting Nova-dependent splicing regulation. Nature 444, 580-586.
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
82
-
-
67349097457
-
Cancer-associated regulation of alternative splicing
-
Venables, J. P., Klinck, R., Koh, C., Gervais-Bird, J., Bramard, A., Inkel, L., Durand, M., Couture, S., Froehlich, U., Lapointe, E., Lucier, J. F., Thibault, P., Rancourt, C., Tremblay, K., Prinos, P., Chabot, B., and Elela, S. A. (2009). Cancer-associated regulation of alternative splicing. Nat. Struct. Mol. Biol. 16, 670-676.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 670-676
-
-
Venables, J.P.1
Klinck, R.2
Koh, C.3
Gervais-Bird, J.4
Bramard, A.5
Inkel, L.6
Durand, M.7
Couture, S.8
Froehlich, U.9
Lapointe, E.10
Lucier, J.F.11
Thibault, P.12
Rancourt, C.13
Tremblay, K.14
Prinos, P.15
Chabot, B.16
Elela, S.A.17
-
83
-
-
30444459024
-
Structure of the two most C-terminal RNA recognition motifs of PTB using segmental isotope labeling
-
Vitali, F., Henning, A., Oberstrass, F. C., Hargous, Y., Auweter, S. D., Erat, M., and Allain, F. H. (2006). Structure of the two most C-terminal RNA recognition motifs of PTB using segmental isotope labeling. EMBO J. 25, 150-162.
-
(2006)
EMBO J.
, vol.25
, pp. 150-162
-
-
Vitali, F.1
Henning, A.2
Oberstrass, F.C.3
Hargous, Y.4
Auweter, S.D.5
Erat, M.6
Allain, F.H.7
-
84
-
-
85011940612
-
Riboswitch-mediated control of gene expression in eukaryotes
-
Wachter, A. (2010). Riboswitch-mediated control of gene expression in eukaryotes. RNA Biol. 7, 67-76.
-
(2010)
RNA Biol.
, vol.7
, pp. 67-76
-
-
Wachter, A.1
-
85
-
-
0035038207
-
Polypyrimidine tract binding protein antagonizes exon definition
-
Wagner, E. J., and Garcia-Blanco, M. A. (2001). Polypyrimidine tract binding protein antagonizes exon definition. Mol. Cell. Biol. 21, 3281-3288.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 3281-3288
-
-
Wagner, E.J.1
Garcia-Blanco, M.A.2
-
86
-
-
18044371378
-
The ASRG database: Identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing
-
Wang, B. B., and Brendel, V. (2004). The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing. Genome Biol. 5, R102.
-
(2004)
Genome Biol.
, vol.5
-
-
Wang, B.B.1
Brendel, V.2
-
87
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
Wang, B. B., and Brendel, V. (2006). Genomewide comparative analysis of alternative splicing in plants. Proc. Natl. Acad. Sci. U.S.A. 103, 7175-7180.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
88
-
-
60149092037
-
Involvement of polypyrimidine tract-binding protein (PTB)-related proteins in pollen germination in Arabidopsis
-
Wang, S., and Okamoto, T. (2009). Involvement of polypyrimidine tract-binding protein (PTB)-related proteins in pollen germination in Arabidopsis. Plant Cell Physiol. 50, 179-190.
-
(2009)
Plant Cell Physiol.
, vol.50
, pp. 179-190
-
-
Wang, S.1
Okamoto, T.2
-
89
-
-
34247221117
-
SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis
-
Wang, X., Zhang, Y., Ma, Q., Zhang, Z., Xue, Y., Bao, S., and Chong, K. (2007). SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis. EMBO J. 26, 1934-1941.
-
(2007)
EMBO J.
, vol.26
, pp. 1934-1941
-
-
Wang, X.1
Zhang, Y.2
Ma, Q.3
Zhang, Z.4
Xue, Y.5
Bao, S.6
Chong, K.7
-
90
-
-
77649158879
-
Role of RNA structure in regulating pre-mRNA splicing
-
Warf, M. B., and Berglund, J. A. (2010). Role of RNA structure in regulating pre-mRNA splicing. Trends Biochem. Sci. 35, 169-178.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 169-178
-
-
Warf, M.B.1
Berglund, J.A.2
-
91
-
-
0346124413
-
Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay
-
Wollerton, M. C., Gooding, C., Wagner, E. J., Garcia-Blanco, M. A., and Smith, C. W. (2004). Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay. Mol. Cell 13, 91-100.
-
(2004)
Mol. Cell
, vol.13
, pp. 91-100
-
-
Wollerton, M.C.1
Gooding, C.2
Wagner, E.J.3
Garcia-Blanco, M.A.4
Smith, C.W.5
-
92
-
-
0041806593
-
Protein kinase A phosphorylation modulates transport of the polypyrimidine tract-binding protein
-
Xie, J., Lee, J. A., Kress, T. L., Mowry, K. L., and Black, D. L. (2003). Protein kinase A phosphorylation modulates transport of the polypyrimidine tract-binding protein. Proc. Natl. Acad. Sci. U.S.A. 100, 8776-8781.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 8776-8781
-
-
Xie, J.1
Lee, J.A.2
Kress, T.L.3
Mowry, K.L.4
Black, D.L.5
-
93
-
-
48149096726
-
MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays
-
Xing, Y., Stoilov, P., Kapur, K., Han, A., Jiang, H., Shen, S., Black, D. L., and Wong, W. H. (2008). MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA 14, 1470-1479.
-
(2008)
RNA
, vol.14
, pp. 1470-1479
-
-
Xing, Y.1
Stoilov, P.2
Kapur, K.3
Han, A.4
Jiang, H.5
Shen, S.6
Black, D.L.7
Wong, W.H.8
-
94
-
-
72149117411
-
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping
-
Xue, Y., Zhou, Y., Wu, T., Zhu, T., Ji, X., Kwon, Y. S., Zhang, C., Yeo, G., Black, D. L., Sun, H., Fu, X. D., and Zhang, Y. (2009). Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Mol. Cell 36, 996-1006.
-
(2009)
Mol. Cell
, vol.36
, pp. 996-1006
-
-
Xue, Y.1
Zhou, Y.2
Wu, T.3
Zhu, T.4
Ji, X.5
Kwon, Y.S.6
Zhang, C.7
Yeo, G.8
Black, D.L.9
Sun, H.10
Fu, X.D.11
Zhang, Y.12
-
95
-
-
59649107040
-
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
-
Yeo, G. W., Coufal, N. G., Liang, T. Y., Peng, G. E., Fu, X. D., and Gage, F. H. (2009). An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat. Struct. Mol. Biol. 16, 130-137.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 130-137
-
-
Yeo, G.W.1
Coufal, N.G.2
Liang, T.Y.3
Peng, G.E.4
Fu, X.D.5
Gage, F.H.6
-
96
-
-
51949111100
-
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
-
Zhang, C., Zhang, Z., Castle, J., Sun, S., Johnson, J., Krainer, A. R., and Zhang, M. Q. (2008). Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev. 22, 2550-2563.
-
(2008)
Genes Dev.
, vol.22
, pp. 2550-2563
-
-
Zhang, C.1
Zhang, Z.2
Castle, J.3
Sun, S.4
Johnson, J.5
Krainer, A.R.6
Zhang, M.Q.7
-
97
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang, G., Guo, G., Hu, X., Zhang, Y., Li, Q., Li, R., Zhuang, R., Lu, Z., He, Z., Fang, X., Chen, L., Tian, W., Tao, Y., Kristiansen, K., Zhang, X., Li, S., Yang, H., and Wang, J. (2010). Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res. 20, 646-654.
-
(2010)
Genome Res.
, vol.20
, pp. 646-654
-
-
Zhang, G.1
Guo, G.2
Hu, X.3
Zhang, Y.4
Li, Q.5
Li, R.6
Zhuang, R.7
Lu, Z.8
He, Z.9
Fang, X.10
Chen, L.11
Tian, W.12
Tao, Y.13
Kristiansen, K.14
Zhang, X.15
Li, S.16
Yang, H.17
Wang, J.18
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