Circadian rhythms in Arabidopsis: Time for nuclear proteins

Planta

Volumn 214, Issue 3, 2002, Pages 334-344

  Staiger, Dorothee ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Arabidopsis (nuclear proteins); Circadian rhythm; Endogenous clock; Negative feedback loop; Nuclear protein

Indexed keywords

ENVIRONMENTAL IMPACT; PROTEINS; SYNCHRONIZATION;

NUCLEAR PROTEINS;

PLANTS (BOTANY);

ANIMALS; ARABIDOPSIS; CIRCADIAN RHYTHM; DROSOPHILA; LIGHT; NUCLEAR PROTEINS; PHOTORECEPTORS; TIME FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 0036939241     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004250100662     Document Type: Review

References (100)

1. Andersson CR, Harmer SL, Schultz TF, Kay SA (1999) The Reveille (REV) family of DNA binding proteins and the circadian clock. Abstract from the 10th International Conference on Arabidopsis Research, Australia, http://arabidopsis.en-bio.com/
2. Apel K, Kloppstech K (1978) The plastid membranes of barley (Hordeum vulgare). Light-induced appearance of mRNA coding for the apoprotein of the light-harvesting chlorophyll a/b protein. Eur J Biochem 85:581-588
3. Aschoff J (1979) Circadian rhythms: Influences of internal and external factors on the period measured in constant conditions. Z Tierpsychol 49:225-249
4. Barak S, Tobin EM, Green RM, Andronis C, Sugano S (2000) All in good time: The Arabidopsis circadian clock. Trends Plant Sci 5:517-522
5. Bognar LK, Hall A, Adam E, Thain SC, Nagy F, Millar AJ (1999) The circadian clock controls the expression pattern of the circadian input photoreceptor, phytochrome B. Proc Natl Acad Sci USA 96:14652-14657
6. Brown SA, Schibler U (1999) The ins and outs of circadian timekeeping. Curr Opin Genet Dev 9:588-594
7. Bünning E (1936) Die endogene tagesrhythmik als grundlage der photoperiodischen reaktion. Ber Dtsch Bot Ges 54:590-607
8. Carpenter CD, Kreps JA, Simon AE (1994) Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Plant Physiol 104:1015-1025
9. Carré I, Kay S (1995) Multiple DNA-protein interactions at a circadian-regulated promoter element. Plant Cell 7:3039-3051
10. Chou M-L, Yang C-H (1999) Late-flowering genes interact with early-flowering genes to regulate flowering time in Arabidopsis thaliana. Plant Cell Physiol 40:702-708
11. Christie JM, Salomon M, Nozue K, Wada M, Briggs WR (1999) LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nphl): Binding sites for the chromophore flavin mononucleotide. Proc Natl Acad Sci USA 96:8779-8783
12. Crosthwaite SC, Dunlap JC, Loros JJ (1997) Neurospora wc-1 and wc-2: Transcription, photoresponses, and the origins of circadian rhythmicity. Science 276:763-769
13. Curtin K, Huang J, Rosbash M (1995) Temporally regulated entry of the Drosophila period protein contributes to the circadian clock. Neuron 14:365-372
14. Dembinska M, Stanewsky R, Hall J, Rosbash M (1997) Circadian cycling of a period-lacZ fusion protein in Drosophila: Evidence for an instability cycling element in PER. J Biol Rhythms 12:157-172
15. Devlin PF, Kay SA (2000) Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. Plant Cell 12:2499-2510
16. Dowson-Day MJ, Millar AJ (1999) Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J 17:63-71
17. Dunlap JC (1999) Molecular bases for circadian clocks. Cell 96:271-290
18. Edery I (1999) Role of posttranscriptional regulation in circadian clocks: Lessons from Drosophila. Chronobiol Int 16:377-414
19. Fairchild CD, Schumaker MA, Quail PH (2000) HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev 14:2377-2391
20. Fowler S, Lee K, Onouchi H, Samach A, Richardson K, Morris B, Coupland G, Putterill J (1999) GIGANTEA: A circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. EMBO J 18:4679-4688
21. Giuliano G, Hoffman NE, Ko K, Scolnik PA, Cashmore AR (1988) A light-entrained circadian clock controls transcription of several plant genes. EMBO J 7:3635-3642
22. Glossup NJR, Lyons LC, Hardin PE (1999) Interlocked feedback loops within the Drosophila circadian oscillator. Science 286:766-769
23. Green RM, Tobin EM (1999) Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proc Natl Acad Sci USA 96:4176-4179
24. Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-2113
25. Harter K, Kircher S, Frohnmeyer H, Krenz M, Nagy F, Schäfer E (1994) Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. Plant Cell 6:545-559
26. Heintzen C, Melzer S, Fischer R, Kappeler S, Apel K, Staiger D (1994a) A light- and temperature-entrained circadian clock controls expression of transcripts encoding nuclear proteins with homology to RNA-binding proteins in meristematic tissue. Plant J 5:799-813
27. Heintzen C, Fischer R, Melzer S, Kappeler K, Apel K, Staiger D (1994b) Circadian oscillations of a transcript encoding a germin-like protein that is associated with cell walls in young leaves of the long-day plant Sinapis alba L. Plant Physiol 106:905-915
28. Heintzen C, Nater M, Apel K, Staiger D (1997) AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana. Proc Natl Acad Sci USA 94:8515-8520
29. Hicks K, Millar A, Carré I, Somers D, Straume M, Meeks-Wagner R, Kay S (1996) Conditional circadian dysfunction in the Arabidopsis early-flowering 3 mutant. Science 274:790-792
30. Hicks KA, Albertson TM, Wagner DR (2001) Early flowering3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis. Plant Cell 13:1281-1292
31. Highkin HR, Hanson JB (1954) Possible interactions between light-dark cycles and endogenous daily rhythms on the growth of tomato plants. Plant Physiol 29:301-302
32. Hillman WS (1956) Injury of tomato plants by continuous light and unfavorable photoperiodic cycles. Am J Bot 43:89-96
33. Huq E, Tepperman JM, Quail PH (2000) GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis. Proc Natl Acad Sci USA 97:9789-9794
34. Ivanchenko M, Stanewsky R, Giebultowicz JM (2001) Circadian photoreception in Drosophila: Functions of cryptochrome in peripheral and central clocks. J Biol Rhythms 16:205-215
35. Jarillo JA, Capel J, Tang RH, Yang HQ, Alonso JM, Ecker JR, Cashmore AR (2001) An Arabidopsis circadian clock component interacts with both CRY1 and phyB. Nature 410:487-490
36. Jouve L, Gaspar T, Kevers C, Greppin H, Degli Agosti R (1999) Involvement of indole-3-acetic acid in the circadian growth of the first internode of Arabidopsis. Planta 209:136-142
37. Kiyosue T, Wada M (2000) LKPI (LOV kelch protein I): A factor involved in the regulation of flowering time in Arabidopsis. Plant J 23:807-815
38. Kloppstech K (1985) Diurnal and circadian rhythmicity in the expression of light-induced plan nuclear messenger RNAs. Planta 165:502-506
39. Kreps JA, Muramatsu T, Furuya M, Kay SA (2000) Fluorescent differential display identifies circadian clock-regulated genes in Arabidopsis thaliana. J Biol Rhythms 15:208-217
40. Kruse E, Grimm B, Beator J, Kloppstech K (1997) Developmental and circadian control of the capacity for δ-aminolevulinic acid synthesis in green barley. Planta 202:235-241
41. Kuroda H, Masuda T, Fusada N, Ohta H, Takamiya K (2000) Expression of NADPH-protochlorophyllide oxidoreductase gene in fully green leaves of cucumber. Plant Cell Physiol 41:226-229
42. Lane BG, Dunwell, JM, Ray, JA, Schmitt MR, Cuming AC (1993) Germin, a protein marker of early plant development, is an oxalate oxidase. J Biol Chem 268:12239-12242
43. Lee H, Suh SS, Park E, Cho E, Ahn JH, Kim SG, Lee JS, Kwon YM, Lee I (2000) The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis. Genes Dev 14:2366-2376
44. Liu J, Yu J, McIntosch L, Kende H, Zeevaart JAD (2001) Isolation of a CONSTANS ortholog from Pharbitis nil and its role in flowering. Plant Physiol 125:1821-1830
45. Liu XL, Covington MF, Fankhauser C, Chory J, Wagner DR (2001) ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell 13:1293-1304
46. Liu Z, Taub CC, McClung CR (1996) Identification of an Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase/oxygenase activase (RCA) minimal promoter regulated by light and the circadian clock. Plant Physiol 112:43-51
47. Makino S, Kiba T, Imamura A, Hanaki N, Nakamura A, Suzuki T, Taniguchi M, Ueguchi C, Sugiyama T, Mizuno T (2000) Genes encoding pseudo-response regulators: Insight into Histo-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana. Plant Cell Physiol 41:791-803
48. Martinez-Garcia JF, Huq E, Quail PH (2000) Direct targeting of light signals to a promoter element-bound transcription factor. Science 288:859-863
49. Mas P, Devlin PF, Panda S, Kay SA (2000) Functional interaction of phytochrome B and cryptochrome 2. Nature 408:207-211
50. Matsushika A, Makino S, Kojima M, Mizuno T (2000) Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: Insight into the plant circadian clock. Plant Cell Physiol 41:1002-1012
51. McClung (2000) Circadian rhythms in plants: A millennial view. Physiol Plant 109:359-371
52. McClung CR, Hsu M, Painter JE, Gagne JM, Karlsberg SD, Salome PA (2000) Integrated temporal regulation of the photorespiratory pathway. Circadian regulation of two Arabidopsis genes encoding serine hydroxymethyltransferase. Plant Physiol 123:381-392
53. McNeil GP, Zhang X, Genova G, Jackson FR (1998) A molecular rhythm mediating circadian clock output in Drosophila. Neuron 20:297-303
54. McWatters HG, Bastow RM, Hall A, Millar AJ (2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature 408:716-720
55. Millar A, Carré IA, Strayer CS, Chua N-H, Kay S (1995a) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267:1161-1163
56. Millar A, Straum MA, Chory J, Chua N-H, Kay S (1995b) Phytochrome and blue responsive photoreceptors regulate circadian period in Arabidopsis thaliana. Science 267:1163-1166
57. Millar AJ (1999) Biological clocks in Arabidopsis thaliana. New Phytol 141:175-197
58. Millar AJ, Kay SA (1996) Integration of circadian and photo-transduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc Natl Acad Sci USA 93:15491-15496
59. Mittag M, Lee DH, Hastings JW (1994) Circadian expression of the luciferin-binding protein correlates with the binding of a protein to the 3′ untranslated region of its mRNA. Proc Natl Acad Sci USA 91:5257-5261
60. Mittag M, Li Y, Hastings JW (1998) The mRNA level of the circadian regulated Gonyaulax luciferase remains constant over the cycle. Chronobiol Int 15:93-98
61. Morse D, Milos PM, Roux E, Hastings JW (1989) Circadian regulation of bioluminescence in Gonyaulax involves translational control. Proc Natl Acad Sci USA 86:172-176
62. Nagy F, Kircher S, Schäfer E (2000) Nucleo-cytoplasmic partitioning of the plant photoreceptors phytochromes. Semin Cell Dev Biol 11:505-510
63. Nelson DC, Lasswell J, Rogg LE, Cohen MA, Bartel B (2000) FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 101:331-340
64. Osterlund MT, Hardtke CS, Wei N, Deng XW (2000) Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature 405:462-466
65. Ouyang Y, Andersson CR, Kondo T, Golden SS, Johnson CH (1998) Resonating circadian clocks enhance fitness in cyanobacteria. Proc Natl Acad Sci USA 95:8660-8664
66. Papenbrock J, Mock H-P, Kruse E, Grimm B (1999) Expression studies in tetrapyrrole bio-synthesis: Inverse maxima of magnesium chelatase and ferrochelatase activity during cyclic photoperiods. Planta 208:264-273
67. Park DH, Somers DE, Kim YS, Choy YH, Lim HK, Soh MS, Kim HJ, Kay SA, Nam HG (1999) Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285:1579-1582
68. Piechulla B, Gruissem W (1987) Diurnal mRNA fluctuations of nuclear and plasmid genes in developing tomato fruits. EMBO J 6:3593-3599
69. Reimmann C, Dudler R (1993) Circadian rhythmicity in the expression of a novel light-regulated rice gene. Plant Mol Biol 22:165-170
70. Samach A, Onouchi H, Gold SE, Ditta GS, Schwarz-Sommer Z, Yanofsky MF, Coupland G (2000) Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288:1613-1616
71. Schaffer R, Ramsay N, Samach AC, S., Putterill J, Carré IA, Coupland G (1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93:1219-1229
72. Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M, Wisman E (2001) Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13:113-123
73. Schmitz O, Katayama M, Williams SB, Kondo T, Golden SS (2000) CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science 289:765-768
74. So W, Rosbash M (1997) Post-transcriptional regulation contributes to Drosophila clock gene mRNA cycling. EMBO J 16:7146-7155
75. Somers D, Devlin P, Kay SA (1998a) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science 282:1488-1490
76. Somers D, Webb AA, Pearson M, Kay SA (1998b) The short period mutant toc1-1 alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125:485-494
77. Somers DE (1999) The physiology and molecular bases of the plant circadian clock. Plant Physiol 121:9-20
78. Somers DE, Schultz TF, Milnamow M, Kay SA (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101:319-329
79. Spiegelman JI, Mindrinos MN, Fankhauser C, Richards D, Lutes J, Chory J, Oefner PJ (2000) Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. Plant Cell 12:2485-2498
80. Staiger D, Apel K (1999) Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: Characterisation of a minimal promoter element. Mol Gen Genet 261:811-819
81. Staiger D, Heintzen C (1999) The circadian system of Arabidopsis thaliana - Forward and reverse genetic approaches. Chronobiol Int 16:1-16
82. Staiger D, Apel K, Trepp G (1999) The Atger3 promoter confers circadian clock-regulated transcription with peak expression at the beginning of the night. Plant Mol Biol 40:873-882
83. Stanewsky R, Jamison C, Plautz J, Kay S, Hall JC (1997) Multiple circadian-regulated elements contribute to cycling period gene expression in Drosophila. EMBO J 16:5006-5018
84. bmutation identifies cryptochrome as a circadian photoreceptor in Drosophila. Cell 95:681-692
85. Strayer C, Oyama T, Schultz TF, Raman R, Somers DE, Mas P, Panda S, Kreps JA, Kay SA (2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289:768-771
86. Suarez-Lopez P, Wheatley K, Robson F, Onouchi H, Valverde F, Coupland G (2001) CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 410:1116-1120
87. Sugano S, Andronis C, Green R, Wang Z, Tobin E (1998) Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated gene 1 protein. Proc Natl Acad Sci USA 95:11020-11025
88. Sugano S, Andronis C, Ong MS, Green RM, Tobin EM (1999) The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis. Proc Natl Acad Sci USA 96:12362-12366
89. Suri V, Hall JC, Rosbash M (2000) Two novel doubletime mutants alter circadian properties and eliminate the delay between RNA and protein in Drosophila. J Neurosci 20:7547-7555
90. Swarup K, Alonso-Blanco C, Lynn JR, Michaels SD, Amasino RM, Koornneef M, Millar AJ (1999) Natural allelic variation identifies new genes in the Arabidopsis circadian system. Plant J 20:67-77
91. Sweeney BM (1987) Rhythmic Phenomena in Plants. Academic Press, San Diego
92. Thompson AJ, Jackson AC, Parker RA, Morpeth DR, Burbidge A, Taylor IB (2000) Abscisic acid biosynthesis in tomato: Regulation of zeaxanthin epoxidase and 9-cis-epoxycarotenoid dioxygenase mRNAs by light/dark cycles, water stress and abscisic acid. Plant Mol Biol 42:833-845
93. van der Horst GTJ, Muitjtjens M, Kobayashi K, Takano R, Kanno S, Takao M, de Wit J, Verkerk A, Eker APM, van Leenen D, Buijis R, Bootsma D, Hoeijmakers JHJ, Yasui A (1999) Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms. Nature 398:627-630
94. Wang ZY, Tobin EM (1998) Constitutive expression of the Circadian Clock Associated1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93:1207-1217
95. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hdl, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473-2483
96. Yanovsky MJ, Mazzella MA, Casal JJ (2000) A quadruple photoreceptor mutant still keeps track of time. Curr Biol 10:1013-1015
97. Young MW (2000) Life's 24-hour clock: Molecular control of circadian rhythms in animal cells. Trends Biochem Sci 25:601-606
98. Zhang X, McNeil GP, Hilderbrand-Chae MJ, Franklin TM, Schroeder AJ, Jackson FR (2000) Circadian regulation of the lark RNA-binding protein within identifiable neurosecretory cells. J Neurobiol 45:14-29
99. Zhong HH, McClung CR (1996) The circadian clock gates expression of two Arabidopsis catalase genes to distinct and opposite circadian phases. Mol Gen Genet 251:196-203
100. Zhong HH, Resnick AS, Straume M, McClung CR (1997) Effects of synergistic signaling by phytochrome A and cryptochrome 1 on circadian clock-regulated catalase expression. Plant Cell 9:947-955