-
1
-
-
4544362674
-
Mammalian circadian biology: Elucidating genome-wide levels of temporal organization
-
Lowrey, P. L. and Takahashi, J. S. (2004) Mammalian circadian biology: Elucidating genome-wide levels of temporal organization Annu. Rev. Genomics Hum. Genet. 5, 407-441
-
(2004)
Annu. Rev. Genomics Hum. Genet.
, vol.5
, pp. 407-441
-
-
Lowrey, P.L.1
Takahashi, J.S.2
-
2
-
-
33744515807
-
Circadian orchestration of the hepatic proteome
-
Reddy, A. B., Karp, N. A., Maywood, E. S., Sage, E. A., Deery, M., O'Neill, J. S., Wong, G. K., Chesham, J., Odell, M., Lilley, K. S., Kyriacou, C. P., and Hastings, M. H. (2006) Circadian orchestration of the hepatic proteome Curr. Biol. 16, 1107-1115
-
(2006)
Curr. Biol.
, vol.16
, pp. 1107-1115
-
-
Reddy, A.B.1
Karp, N.A.2
Maywood, E.S.3
Sage, E.A.4
Deery, M.5
O'Neill, J.S.6
Wong, G.K.7
Chesham, J.8
Odell, M.9
Lilley, K.S.10
Kyriacou, C.P.11
Hastings, M.H.12
-
3
-
-
84891940889
-
Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver
-
Mauvoisin, D., Wang, J., Jouffe, C., Martin, E., Atger, F., Waridel, P., Quadroni, M., Gachon, F., and Naef, F. (2014) Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver Proc. Natl. Acad. Sci. U.S.A. 111, 167-172
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 167-172
-
-
Mauvoisin, D.1
Wang, J.2
Jouffe, C.3
Martin, E.4
Atger, F.5
Waridel, P.6
Quadroni, M.7
Gachon, F.8
Naef, F.9
-
4
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel, C. and Marcotte, E. M. (2012) Insights into the regulation of protein abundance from proteomic and transcriptomic analyses Nat. Rev. Genet. 13, 227-232
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
5
-
-
0027023614
-
The role of the transcriptional activator protein DBP in circadian liver gene expression
-
Wuarin, J., Falvey, E., Lavery, D., Talbot, D., Schmidt, E., Ossipow, V., Fonjallaz, P., and Schibler, U. (1992) The role of the transcriptional activator protein DBP in circadian liver gene expression J. Cell Sci., Suppl. 16, 123-127
-
(1992)
J. Cell Sci., Suppl.
, vol.16
, pp. 123-127
-
-
Wuarin, J.1
Falvey, E.2
Lavery, D.3
Talbot, D.4
Schmidt, E.5
Ossipow, V.6
Fonjallaz, P.7
Schibler, U.8
-
7
-
-
84877929035
-
The circadian epigenome: How metabolism talks to chromatin remodeling
-
Aguilar-Arnal, L. and Sassone-Corsi, P. (2013) The circadian epigenome: How metabolism talks to chromatin remodeling Curr. Opin. Cell Biol. 25, 170-176
-
(2013)
Curr. Opin. Cell Biol.
, vol.25
, pp. 170-176
-
-
Aguilar-Arnal, L.1
Sassone-Corsi, P.2
-
8
-
-
84864309100
-
Clocks, metabolism, and the epigenome
-
Feng, D. and Lazar, M. A. (2012) Clocks, metabolism, and the epigenome Mol. Cell 47, 158-167
-
(2012)
Mol. Cell
, vol.47
, pp. 158-167
-
-
Feng, D.1
Lazar, M.A.2
-
9
-
-
0030800739
-
Circadian oscillation of a mammalian homologue of the Drosophila period gene
-
Tei, H., Okamura, H., Shigeyoshi, Y., Fukuhara, C., Ozawa, R., Hirose, M., and Sakaki, Y. (1997) Circadian oscillation of a mammalian homologue of the Drosophila period gene Nature 389, 512-516
-
(1997)
Nature
, vol.389
, pp. 512-516
-
-
Tei, H.1
Okamura, H.2
Shigeyoshi, Y.3
Fukuhara, C.4
Ozawa, R.5
Hirose, M.6
Sakaki, Y.7
-
10
-
-
0030885313
-
RIGUI, a putative mammalian ortholog of the Drosophila period gene
-
Sun, Z. S., Albrecht, U., Zhuchenko, O., Bailey, J., Eichele, G., and Lee, C. C. (1997) RIGUI, a putative mammalian ortholog of the Drosophila period gene Cell 90, 1003-1011
-
(1997)
Cell
, vol.90
, pp. 1003-1011
-
-
Sun, Z.S.1
Albrecht, U.2
Zhuchenko, O.3
Bailey, J.4
Eichele, G.5
Lee, C.C.6
-
11
-
-
20244377493
-
Positional cloning of the mouse circadian clock gene
-
King, D. P., Zhao, Y., Sangoram, A. M., Wilsbacher, L. D., Tanaka, M., Antoch, M. P., Steeves, T. D., Vitaterna, M. H., Kornhauser, J. M., Lowrey, P. L., Turek, F. W., and Takahashi, J. S. (1997) Positional cloning of the mouse circadian clock gene Cell 89, 641-653
-
(1997)
Cell
, vol.89
, pp. 641-653
-
-
King, D.P.1
Zhao, Y.2
Sangoram, A.M.3
Wilsbacher, L.D.4
Tanaka, M.5
Antoch, M.P.6
Steeves, T.D.7
Vitaterna, M.H.8
Kornhauser, J.M.9
Lowrey, P.L.10
Turek, F.W.11
Takahashi, J.S.12
-
12
-
-
0031472474
-
Two period homologs: Circadian expression and photic regulation in the suprachiasmatic nuclei
-
Shearman, L. P., Zylka, M. J., Weaver, D. R., Kolakowski, L. F., Jr., and Reppert, S. M. (1997) Two period homologs: Circadian expression and photic regulation in the suprachiasmatic nuclei Neuron 19, 1261-1269
-
(1997)
Neuron
, vol.19
, pp. 1261-1269
-
-
Shearman, L.P.1
Zylka, M.J.2
Weaver, D.R.3
Kolakowski, L.F.4
Reppert, S.M.5
-
13
-
-
0032541435
-
A light-independent oscillatory gene mPer3 in mouse SCN and OVLT
-
Takumi, T., Taguchi, K., Miyake, S., Sakakida, Y., Takashima, N., Matsubara, C., Maebayashi, Y., Okumura, K., Takekida, S., Yamamoto, S., Yagita, K., Yan, L., Young, M. W., and Okamura, H. (1998) A light-independent oscillatory gene mPer3 in mouse SCN and OVLT EMBO J. 17, 4753-4759
-
(1998)
EMBO J.
, vol.17
, pp. 4753-4759
-
-
Takumi, T.1
Taguchi, K.2
Miyake, S.3
Sakakida, Y.4
Takashima, N.5
Matsubara, C.6
Maebayashi, Y.7
Okumura, K.8
Takekida, S.9
Yamamoto, S.10
Yagita, K.11
Yan, L.12
Young, M.W.13
Okamura, H.14
-
14
-
-
0032214514
-
Mammalian circadian autoregulatory loop: A timeless ortholog and mPer1 interact and negatively regulate CLOCK-BMAL1-induced transcription
-
Sangoram, A. M., Saez, L., Antoch, M. P., Gekakis, N., Staknis, D., Whiteley, A., Fruechte, E. M., Vitaterna, M. H., Shimomura, K., King, D. P., Young, M. W., Weitz, C. J., and Takahashi, J. S. (1998) Mammalian circadian autoregulatory loop: A timeless ortholog and mPer1 interact and negatively regulate CLOCK-BMAL1-induced transcription Neuron 21, 1101-1113
-
(1998)
Neuron
, vol.21
, pp. 1101-1113
-
-
Sangoram, A.M.1
Saez, L.2
Antoch, M.P.3
Gekakis, N.4
Staknis, D.5
Whiteley, A.6
Fruechte, E.M.7
Vitaterna, M.H.8
Shimomura, K.9
King, D.P.10
Young, M.W.11
Weitz, C.J.12
Takahashi, J.S.13
-
15
-
-
0032214551
-
Molecular analysis of mammalian timeless
-
Zylka, M. J., Shearman, L. P., Levine, J. D., Jin, X., Weaver, D. R., and Reppert, S. M. (1998) Molecular analysis of mammalian timeless Neuron 21, 1115-1122
-
(1998)
Neuron
, vol.21
, pp. 1115-1122
-
-
Zylka, M.J.1
Shearman, L.P.2
Levine, J.D.3
Jin, X.4
Weaver, D.R.5
Reppert, S.M.6
-
16
-
-
0032441139
-
Identification of the mammalian homologues of the Drosophila timeless gene, Timeless1
-
Koike, N., Hida, A., Numano, R., Hirose, M., Sakaki, Y., and Tei, H. (1998) Identification of the mammalian homologues of the Drosophila timeless gene, Timeless1 FEBS Lett. 441, 427-431
-
(1998)
FEBS Lett.
, vol.441
, pp. 427-431
-
-
Koike, N.1
Hida, A.2
Numano, R.3
Hirose, M.4
Sakaki, Y.5
Tei, H.6
-
17
-
-
6544232819
-
A mammalian ortholog of Drosophila timeless, highly expressed in SCN and retina, forms a complex with mPER1
-
Takumi, T., Nagamine, Y., Miyake, S., Matsubara, C., Taguchi, K., Takekida, S., Sakakida, Y., Nishikawa, K., Kishimoto, T., Niwa, S., Okumura, K., and Okamura, H. (1999) A mammalian ortholog of Drosophila timeless, highly expressed in SCN and retina, forms a complex with mPER1 Genes Cells 4, 67-75
-
(1999)
Genes Cells
, vol.4
, pp. 67-75
-
-
Takumi, T.1
Nagamine, Y.2
Miyake, S.3
Matsubara, C.4
Taguchi, K.5
Takekida, S.6
Sakakida, Y.7
Nishikawa, K.8
Kishimoto, T.9
Niwa, S.10
Okumura, K.11
Okamura, H.12
-
18
-
-
0034697099
-
Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau
-
Lowrey, P. L., Shimomura, K., Antoch, M. P., Yamazaki, S., Zemenides, P. D., Ralph, M. R., Menaker, M., and Takahashi, J. S. (2000) Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau Science 288, 483-492
-
(2000)
Science
, vol.288
, pp. 483-492
-
-
Lowrey, P.L.1
Shimomura, K.2
Antoch, M.P.3
Yamazaki, S.4
Zemenides, P.D.5
Ralph, M.R.6
Menaker, M.7
Takahashi, J.S.8
-
19
-
-
0023764577
-
A mutation of the circadian system in golden hamsters
-
Ralph, M. R. and Menaker, M. (1988) A mutation of the circadian system in golden hamsters Science 241, 1225-1227
-
(1988)
Science
, vol.241
, pp. 1225-1227
-
-
Ralph, M.R.1
Menaker, M.2
-
20
-
-
52149109334
-
The genetics of mammalian circadian order and disorder: Implications for physiology and disease
-
Takahashi, J. S., Hong, H. K., Ko, C. H., and McDearmon, E. L. (2008) The genetics of mammalian circadian order and disorder: Implications for physiology and disease Nat. Rev. Genet. 9, 764-775
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 764-775
-
-
Takahashi, J.S.1
Hong, H.K.2
Ko, C.H.3
McDearmon, E.L.4
-
21
-
-
18444414586
-
Coordinated transcription of key pathways in the mouse by the circadian clock
-
Panda, S., Antoch, M. P., Miller, B. H., Su, A. I., Schook, A. B., Straume, M., Schultz, P. G., Kay, S. A., Takahashi, J. S., and Hogenesch, J. B. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock Cell 109, 307-320
-
(2002)
Cell
, vol.109
, pp. 307-320
-
-
Panda, S.1
Antoch, M.P.2
Miller, B.H.3
Su, A.I.4
Schook, A.B.5
Straume, M.6
Schultz, P.G.7
Kay, S.A.8
Takahashi, J.S.9
Hogenesch, J.B.10
-
22
-
-
0037007625
-
Extensive and divergent circadian gene expression in liver and heart
-
Storch, K. F., Lipan, O., Leykin, I., Viswanathan, N., Davis, F. C., Wong, W. H., and Weitz, C. J. (2002) Extensive and divergent circadian gene expression in liver and heart Nature 417, 78-83
-
(2002)
Nature
, vol.417
, pp. 78-83
-
-
Storch, K.F.1
Lipan, O.2
Leykin, I.3
Viswanathan, N.4
Davis, F.C.5
Wong, W.H.6
Weitz, C.J.7
-
23
-
-
0036682099
-
A transcription factor response element for gene expression during circadian night
-
Ueda, H. R., Chen, W., Adachi, A., Wakamatsu, H., Hayashi, S., Takasugi, T., Nagano, M., Nakahama, K., Suzuki, Y., Sugano, S., Iino, M., Shigeyoshi, Y., and Hashimoto, S. (2002) A transcription factor response element for gene expression during circadian night Nature 418, 534-539
-
(2002)
Nature
, vol.418
, pp. 534-539
-
-
Ueda, H.R.1
Chen, W.2
Adachi, A.3
Wakamatsu, H.4
Hayashi, S.5
Takasugi, T.6
Nagano, M.7
Nakahama, K.8
Suzuki, Y.9
Sugano, S.10
Iino, M.11
Shigeyoshi, Y.12
Hashimoto, S.13
-
24
-
-
57249086249
-
Transcriptional profiling of mRNA expression in the mouse distal colon
-
Hoogerwerf, W. A., Sinha, M., Conesa, A., Luxon, B. A., Shahinian, V. B., Cornelissen, G., Halberg, F., Bostwick, J., Timm, J., and Cassone, V. M. (2008) Transcriptional profiling of mRNA expression in the mouse distal colon Gastroenterology 135, 2019-2029
-
(2008)
Gastroenterology
, vol.135
, pp. 2019-2029
-
-
Hoogerwerf, W.A.1
Sinha, M.2
Conesa, A.3
Luxon, B.A.4
Shahinian, V.B.5
Cornelissen, G.6
Halberg, F.7
Bostwick, J.8
Timm, J.9
Cassone, V.M.10
-
25
-
-
0036152706
-
Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies
-
Kita, Y., Shiozawa, M., Jin, W., Majewski, R. R., Besharse, J. C., Greene, A. S., and Jacob, H. J. (2002) Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies Pharmacogenetics 12, 55-65
-
(2002)
Pharmacogenetics
, vol.12
, pp. 55-65
-
-
Kita, Y.1
Shiozawa, M.2
Jin, W.3
Majewski, R.R.4
Besharse, J.C.5
Greene, A.S.6
Jacob, H.J.7
-
26
-
-
0036143201
-
CDNA array analysis of pineal gene expression reveals circadian rhythmicity of the dominant negative helix-loop-helix protein-encoding gene, Id-1
-
Humphries, A., Klein, D., Baler, R., and Carter, D. A. (2002) cDNA array analysis of pineal gene expression reveals circadian rhythmicity of the dominant negative helix-loop-helix protein-encoding gene, Id-1 J. Neuroendocrinol. 14, 101-108
-
(2002)
J. Neuroendocrinol.
, vol.14
, pp. 101-108
-
-
Humphries, A.1
Klein, D.2
Baler, R.3
Carter, D.A.4
-
27
-
-
0037006807
-
Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells
-
Duffield, G. E., Best, J. D., Meurers, B. H., Bittner, A., Loros, J. J., and Dunlap, J. C. (2002) Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells Curr. Biol. 12, 551-557
-
(2002)
Curr. Biol.
, vol.12
, pp. 551-557
-
-
Duffield, G.E.1
Best, J.D.2
Meurers, B.H.3
Bittner, A.4
Loros, J.J.5
Dunlap, J.C.6
-
28
-
-
0035861573
-
Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts
-
Grundschober, C., Delaunay, F., Puhlhofer, A., Triqueneaux, G., Laudet, V., Bartfai, T., and Nef, P. (2001) Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts J. Biol. Chem. 276, 46751-46758
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 46751-46758
-
-
Grundschober, C.1
Delaunay, F.2
Puhlhofer, A.3
Triqueneaux, G.4
Laudet, V.5
Bartfai, T.6
Nef, P.7
-
29
-
-
66349107101
-
Harmonics of circadian gene transcription in mammals
-
Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009) Harmonics of circadian gene transcription in mammals PLoS Genet. 5, e1000442
-
(2009)
PLoS Genet.
, vol.5
, pp. 1000442
-
-
Hughes, M.E.1
Ditacchio, L.2
Hayes, K.R.3
Vollmers, C.4
Pulivarthy, S.5
Baggs, J.E.6
Panda, S.7
Hogenesch, J.B.8
-
30
-
-
0141557951
-
DNA microarray analyses of circadian timing: The genomic basis of biological time
-
Duffield, G. E. (2003) DNA microarray analyses of circadian timing: The genomic basis of biological time J. Neuroendocrinol. 15, 991-1002
-
(2003)
J. Neuroendocrinol.
, vol.15
, pp. 991-1002
-
-
Duffield, G.E.1
-
31
-
-
0035912171
-
When the chips are down
-
Knight, J. (2001) When the chips are down Nature 410, 860-861
-
(2001)
Nature
, vol.410
, pp. 860-861
-
-
Knight, J.1
-
32
-
-
84897908258
-
Technology: The $1,000 genome
-
Hayden, E. C. (2014) Technology: The $1,000 genome Nature 507, 294-295
-
(2014)
Nature
, vol.507
, pp. 294-295
-
-
Hayden, E.C.1
-
33
-
-
84899144072
-
CLOCK-controlled polyphonic regulations of circadian rhythms through canonical and non-canonical E-boxes
-
Yoshitane, H., Ozaki, H., Terajima, H., Du, N. H., Suzuki, Y., Fujimori, T., Kosaka, N., Shimba, S., Sugano, S., Takagi, T., Iwasaki, W., and Fukada, Y. (2014) CLOCK-controlled polyphonic regulations of circadian rhythms through canonical and non-canonical E-boxes Mol. Cell. Biol. 34, 1776-1787
-
(2014)
Mol. Cell. Biol.
, vol.34
, pp. 1776-1787
-
-
Yoshitane, H.1
Ozaki, H.2
Terajima, H.3
Du, N.H.4
Suzuki, Y.5
Fujimori, T.6
Kosaka, N.7
Shimba, S.8
Sugano, S.9
Takagi, T.10
Iwasaki, W.11
Fukada, Y.12
-
34
-
-
84881506759
-
Nascent-Seq reveals novel features of mouse circadian transcriptional regulation
-
Menet, J. S., Rodriguez, J., Abruzzi, K. C., and Rosbash, M. (2012) Nascent-Seq reveals novel features of mouse circadian transcriptional regulation eLife 1, e00011
-
(2012)
ELife
, vol.1
, pp. 00011
-
-
Menet, J.S.1
Rodriguez, J.2
Abruzzi, K.C.3
Rosbash, M.4
-
35
-
-
84870553909
-
Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome
-
Vollmers, C., Schmitz, R. J., Nathanson, J., Yeo, G., Ecker, J. R., and Panda, S. (2012) Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome Cell Metab. 16, 833-845
-
(2012)
Cell Metab.
, vol.16
, pp. 833-845
-
-
Vollmers, C.1
Schmitz, R.J.2
Nathanson, J.3
Yeo, G.4
Ecker, J.R.5
Panda, S.6
-
36
-
-
84870288931
-
Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles
-
Le Martelot, G., Canella, D., Symul, L., Migliavacca, E., Gilardi, F., Liechti, R., Martin, O., Harshman, K., Delorenzi, M., Desvergne, B., Herr, W., Deplancke, B., Schibler, U., Rougemont, J., Guex, N., Hernandez, N., Naef, F., and Cycli, X. C. (2012) Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles PLoS Biol. 10, e1001442
-
(2012)
PLoS Biol.
, vol.10
, pp. 1001442
-
-
Le Martelot, G.1
Canella, D.2
Symul, L.3
Migliavacca, E.4
Gilardi, F.5
Liechti, R.6
Martin, O.7
Harshman, K.8
Delorenzi, M.9
Desvergne, B.10
Herr, W.11
Deplancke, B.12
Schibler, U.13
Rougemont, J.14
Guex, N.15
Hernandez, N.16
Naef, F.17
Cycli, X.C.18
-
37
-
-
84867667011
-
Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals
-
Koike, N., Yoo, S. H., Huang, H. C., Kumar, V., Lee, C., Kim, T. K., and Takahashi, J. S. (2012) Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals Science 338, 349-354
-
(2012)
Science
, vol.338
, pp. 349-354
-
-
Koike, N.1
Yoo, S.H.2
Huang, H.C.3
Kumar, V.4
Lee, C.5
Kim, T.K.6
Takahashi, J.S.7
-
38
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A., Knowles, D. G., Lagarde, J., Veeravalli, L., Ruan, X., Ruan, Y., Lassmann, T., Carninci, P., Brown, J. B., Lipovich, L., Gonzalez, J. M., Thomas, M., Davis, C. A., Shiekhattar, R., Gingeras, T. R., Hubbard, T. J., Notredame, C., Harrow, J., and Guigo, R. (2012) The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression Genome Res. 22, 1775-1789
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
Ruan, X.13
Ruan, Y.14
Lassmann, T.15
Carninci, P.16
Brown, J.B.17
Lipovich, L.18
Gonzalez, J.M.19
Thomas, M.20
Davis, C.A.21
Shiekhattar, R.22
Gingeras, T.R.23
Hubbard, T.J.24
Notredame, C.25
Harrow, J.26
Guigo, R.27
more..
-
39
-
-
34249713720
-
MicroRNA modulation of circadian-clock period and entrainment
-
Cheng, H. Y., Papp, J. W., Varlamova, O., Dziema, H., Russell, B., Curfman, J. P., Nakazawa, T., Shimizu, K., Okamura, H., Impey, S., and Obrietan, K. (2007) microRNA modulation of circadian-clock period and entrainment Neuron 54, 813-829
-
(2007)
Neuron
, vol.54
, pp. 813-829
-
-
Cheng, H.Y.1
Papp, J.W.2
Varlamova, O.3
Dziema, H.4
Russell, B.5
Curfman, J.P.6
Nakazawa, T.7
Shimizu, K.8
Okamura, H.9
Impey, S.10
Obrietan, K.11
-
40
-
-
66749159082
-
MiRNA-regulated dynamics in circadian oscillator models
-
Nandi, A., Vaz, C., Bhattacharya, A., and Ramaswamy, R. (2009) miRNA-regulated dynamics in circadian oscillator models BMC Syst. Biol. 3, 45
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 45
-
-
Nandi, A.1
Vaz, C.2
Bhattacharya, A.3
Ramaswamy, R.4
-
41
-
-
84859645373
-
MicroRNA-mediated regulation in the mammalian circadian rhythm
-
Liu, K. and Wang, R. (2012) MicroRNA-mediated regulation in the mammalian circadian rhythm J. Theor. Biol. 304, 103-110
-
(2012)
J. Theor. Biol.
, vol.304
, pp. 103-110
-
-
Liu, K.1
Wang, R.2
-
42
-
-
70349469700
-
Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm
-
Na, Y. J., Sung, J. H., Lee, S. C., Lee, Y. J., Choi, Y. J., Park, W. Y., Shin, H. S., and Kim, J. H. (2009) Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm Exp. Mol. Med. 41, 638-647
-
(2009)
Exp. Mol. Med.
, vol.41
, pp. 638-647
-
-
Na, Y.J.1
Sung, J.H.2
Lee, S.C.3
Lee, Y.J.4
Choi, Y.J.5
Park, W.Y.6
Shin, H.S.7
Kim, J.H.8
-
43
-
-
34548329963
-
MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster
-
Xu, S., Witmer, P. D., Lumayag, S., Kovacs, B., and Valle, D. (2007) MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster J. Biol. Chem. 282, 25053-25066
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 25053-25066
-
-
Xu, S.1
Witmer, P.D.2
Lumayag, S.3
Kovacs, B.4
Valle, D.5
-
44
-
-
66149167562
-
Integration of microRNA miR-122 in hepatic circadian gene expression
-
Gatfield, D., Le Martelot, G., Vejnar, C. E., Gerlach, D., Schaad, O., Fleury-Olela, F., Ruskeepaa, A. L., Oresic, M., Esau, C. C., Zdobnov, E. M., and Schibler, U. (2009) Integration of microRNA miR-122 in hepatic circadian gene expression Genes Dev. 23, 1313-1326
-
(2009)
Genes Dev.
, vol.23
, pp. 1313-1326
-
-
Gatfield, D.1
Le Martelot, G.2
Vejnar, C.E.3
Gerlach, D.4
Schaad, O.5
Fleury-Olela, F.6
Ruskeepaa, A.L.7
Oresic, M.8
Esau, C.C.9
Zdobnov, E.M.10
Schibler, U.11
-
45
-
-
77956197958
-
MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver
-
Kojima, S., Gatfield, D., Esau, C. C., and Green, C. B. (2010) MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver PLoS One 5, e11264
-
(2010)
PLoS One
, vol.5
, pp. 11264
-
-
Kojima, S.1
Gatfield, D.2
Esau, C.C.3
Green, C.B.4
-
46
-
-
84878755438
-
Role of miR-142-3p in the post-transcriptional regulation of the clock gene Bmal1 in the mouse SCN
-
Shende, V. R., Neuendorff, N., and Earnest, D. J. (2013) Role of miR-142-3p in the post-transcriptional regulation of the clock gene Bmal1 in the mouse SCN PLoS One 8, e65300
-
(2013)
PLoS One
, vol.8
, pp. 65300
-
-
Shende, V.R.1
Neuendorff, N.2
Earnest, D.J.3
-
47
-
-
80052607334
-
MiR-206-mediated dynamic mechanism of the mammalian circadian clock
-
Zhou, W., Li, Y., Wang, X., Wu, L., and Wang, Y. (2011) MiR-206-mediated dynamic mechanism of the mammalian circadian clock BMC Syst. Biol. 5, 141
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 141
-
-
Zhou, W.1
Li, Y.2
Wang, X.3
Wu, L.4
Wang, Y.5
-
48
-
-
84880413383
-
MicroRNA-185 oscillation controls circadian amplitude of mouse Cryptochrome 1 via translational regulation
-
Lee, K. H., Kim, S. H., Lee, H. R., Kim, W., Kim, D. Y., Shin, J. C., Yoo, S. H., and Kim, K. T. (2013) MicroRNA-185 oscillation controls circadian amplitude of mouse Cryptochrome 1 via translational regulation Mol. Biol. Cell 24, 2248-2255
-
(2013)
Mol. Biol. Cell
, vol.24
, pp. 2248-2255
-
-
Lee, K.H.1
Kim, S.H.2
Lee, H.R.3
Kim, W.4
Kim, D.Y.5
Shin, J.C.6
Yoo, S.H.7
Kim, K.T.8
-
49
-
-
84899865106
-
MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability
-
Choi, Y. E., Pan, Y., Park, E., Konstantinopoulos, P., De, S., D'Andrea, A., and Chowdhury, D. (2014) MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability eLife 3, e02445
-
(2014)
ELife
, vol.3
, pp. 02445
-
-
Choi, Y.E.1
Pan, Y.2
Park, E.3
Konstantinopoulos, P.4
De, S.5
D'Andrea, A.6
Chowdhury, D.7
-
50
-
-
84902338279
-
MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale
-
Du, N. H., Arpat, A. B., De Matos, M., and Gatfield, D. (2014) MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale eLife 3, e02510
-
(2014)
ELife
, vol.3
, pp. 02510
-
-
Du, N.H.1
Arpat, A.B.2
De Matos, M.3
Gatfield, D.4
-
51
-
-
84865188054
-
Circadian changes in long noncoding RNAs in the pineal gland
-
Coon, S. L., Munson, P. J., Cherukuri, P. F., Sugden, D., Rath, M. F., Möller, M., Clokie, S. J., Fu, C., Olanich, M. E., Rangel, Z., Werner, T., Program, N. C. S., Mullikin, J. C., and Klein, D. C. (2012) Circadian changes in long noncoding RNAs in the pineal gland Proc. Natl. Acad. Sci. U.S.A. 109, 13319-13324
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 13319-13324
-
-
Coon, S.L.1
Munson, P.J.2
Cherukuri, P.F.3
Sugden, D.4
Rath, M.F.5
Möller, M.6
Clokie, S.J.7
Fu, C.8
Olanich, M.E.9
Rangel, Z.10
Werner, T.11
Program, N.C.S.12
Mullikin, J.C.13
Klein, D.C.14
-
52
-
-
84875177348
-
X-inactivation, imprinting, and long noncoding RNAs in health and disease
-
Lee, J. T. and Bartolomei, M. S. (2013) X-inactivation, imprinting, and long noncoding RNAs in health and disease Cell 152, 1308-1323
-
(2013)
Cell
, vol.152
, pp. 1308-1323
-
-
Lee, J.T.1
Bartolomei, M.S.2
-
53
-
-
15244364078
-
Human antisense genes have unusually short introns: Evidence for selection for rapid transcription
-
Chen, J., Sun, M., Hurst, L. D., Carmichael, G. G., and Rowley, J. D. (2005) Human antisense genes have unusually short introns: Evidence for selection for rapid transcription Trends Genet. 21, 203-207
-
(2005)
Trends Genet.
, vol.21
, pp. 203-207
-
-
Chen, J.1
Sun, M.2
Hurst, L.D.3
Carmichael, G.G.4
Rowley, J.D.5
-
54
-
-
19444386412
-
Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts
-
Chen, J., Sun, M., Hurst, L. D., Carmichael, G. G., and Rowley, J. D. (2005) Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts Trends Genet. 21, 326-329
-
(2005)
Trends Genet.
, vol.21
, pp. 326-329
-
-
Chen, J.1
Sun, M.2
Hurst, L.D.3
Carmichael, G.G.4
Rowley, J.D.5
-
55
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M., Nishida, H., Yap, C. C., Suzuki, M., Kawai, J., Suzuki, H., Carninci, P., Hayashizaki, Y., Wells, C., Frith, M., Ravasi, T., Pang, K. C., Hallinan, J., Mattick, J., Hume, D. A., Lipovich, L., Batalov, S., Engstrom, P. G., Mizuno, Y., Faghihi, M. A., Sandelin, A., Chalk, A. M., Mottagui-Tabar, S., Liang, Z., Lenhard, B., and Wahlestedt, C. (2005) Antisense transcription in the mammalian transcriptome Science 309, 1564-1566
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
Suzuki, H.11
Carninci, P.12
Hayashizaki, Y.13
Wells, C.14
Frith, M.15
Ravasi, T.16
Pang, K.C.17
Hallinan, J.18
Mattick, J.19
Hume, D.A.20
Lipovich, L.21
Batalov, S.22
Engstrom, P.G.23
Mizuno, Y.24
Faghihi, M.A.25
Sandelin, A.26
Chalk, A.M.27
Mottagui-Tabar, S.28
Liang, Z.29
Lenhard, B.30
Wahlestedt, C.31
more..
-
56
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
Kiyosawa, H., Yamanaka, I., Osato, N., Kondo, S., and Hayashizaki, Y. (2003) Antisense transcripts with FANTOM2 clone set and their implications for gene regulation Genome Res. 13, 1324-1334
-
(2003)
Genome Res.
, vol.13
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Hayashizaki, Y.5
-
57
-
-
0030292818
-
Circadian clock neurons in the silkmoth Antheraea pernyi: Novel mechanisms of Period protein regulation
-
Sauman, I. and Reppert, S. M. (1996) Circadian clock neurons in the silkmoth Antheraea pernyi: Novel mechanisms of Period protein regulation Neuron 17, 889-900
-
(1996)
Neuron
, vol.17
, pp. 889-900
-
-
Sauman, I.1
Reppert, S.M.2
-
58
-
-
0242669950
-
Role for antisense RNA in regulating circadian clock function in Neurospora crassa
-
Kramer, C., Loros, J. J., Dunlap, J. C., and Crosthwaite, S. K. (2003) Role for antisense RNA in regulating circadian clock function in Neurospora crassa Nature 421, 948-952
-
(2003)
Nature
, vol.421
, pp. 948-952
-
-
Kramer, C.1
Loros, J.J.2
Dunlap, J.C.3
Crosthwaite, S.K.4
-
59
-
-
33746864152
-
The circadian regulation of Presenilin-2 gene expression
-
Belanger, V., Picard, N., and Cermakian, N. (2006) The circadian regulation of Presenilin-2 gene expression Chronobiol. Int. 23, 747-766
-
(2006)
Chronobiol. Int.
, vol.23
, pp. 747-766
-
-
Belanger, V.1
Picard, N.2
Cermakian, N.3
-
60
-
-
84891688491
-
Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation
-
Liu, Y., Hu, W., Murakawa, Y., Yin, J., Wang, G., Landthaler, M., and Yan, J. (2013) Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation Sci. Rep. 3, 2054
-
(2013)
Sci. Rep.
, vol.3
, pp. 2054
-
-
Liu, Y.1
Hu, W.2
Murakawa, Y.3
Yin, J.4
Wang, G.5
Landthaler, M.6
Yan, J.7
-
61
-
-
0028335560
-
Circadian variation of arginine-vasopressin messenger RNA in the rat suprachiasmatic nucleus
-
Cagampang, F. R., Yang, J., Nakayama, Y., Fukuhara, C., and Inouye, S. T. (1994) Circadian variation of arginine-vasopressin messenger RNA in the rat suprachiasmatic nucleus Brain Res. 24, 179-184
-
(1994)
Brain Res.
, vol.24
, pp. 179-184
-
-
Cagampang, F.R.1
Yang, J.2
Nakayama, Y.3
Fukuhara, C.4
Inouye, S.T.5
-
62
-
-
0023731155
-
Vasopressin mRNA in the suprachiasmatic nuclei: Daily regulation of polyadenylate tail length
-
Robinson, B. G., Frim, D. M., Schwartz, W. J., and Majzoub, J. A. (1988) Vasopressin mRNA in the suprachiasmatic nuclei: Daily regulation of polyadenylate tail length Science 241, 342-344
-
(1988)
Science
, vol.241
, pp. 342-344
-
-
Robinson, B.G.1
Frim, D.M.2
Schwartz, W.J.3
Majzoub, J.A.4
-
63
-
-
84856271946
-
Time of day regulates subcellular trafficking, tripartite synaptic localization, and polyadenylation of the astrocytic fabp7 mRNA
-
Gerstner, J. R., Vanderheyden, W. M., Lavaute, T., Westmark, C. J., Rouhana, L., Pack, A. I., Wickens, M., and Landry, C. F. (2012) Time of day regulates subcellular trafficking, tripartite synaptic localization, and polyadenylation of the astrocytic fabp7 mRNA J. Neurosci. 32, 1383-1394
-
(2012)
J. Neurosci.
, vol.32
, pp. 1383-1394
-
-
Gerstner, J.R.1
Vanderheyden, W.M.2
Lavaute, T.3
Westmark, C.J.4
Rouhana, L.5
Pack, A.I.6
Wickens, M.7
Landry, C.F.8
-
64
-
-
0030698128
-
Post-transcriptional regulation contributes to Drosophila clock gene mRNA cycling
-
So, W. V. and Rosbash, M. (1997) Post-transcriptional regulation contributes to Drosophila clock gene mRNA cycling EMBO J. 16, 7146-7155
-
(1997)
EMBO J.
, vol.16
, pp. 7146-7155
-
-
So, W.V.1
Rosbash, M.2
-
65
-
-
0037039313
-
Photic and circadian expression of luciferase in mPeriod1-luc transgenic mice invivo
-
Wilsbacher, L. D., Yamazaki, S., Herzog, E. D., Song, E. J., Radcliffe, L. A., Abe, M., Block, G., Spitznagel, E., Menaker, M., and Takahashi, J. S. (2002) Photic and circadian expression of luciferase in mPeriod1-luc transgenic mice invivo Proc. Natl. Acad. Sci. U.S.A. 99, 489-494
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 489-494
-
-
Wilsbacher, L.D.1
Yamazaki, S.2
Herzog, E.D.3
Song, E.J.4
Radcliffe, L.A.5
Abe, M.6
Block, G.7
Spitznagel, E.8
Menaker, M.9
Takahashi, J.S.10
-
66
-
-
33846907098
-
LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1
-
Kojima, S., Matsumoto, K., Hirose, M., Shimada, M., Nagano, M., Shigeyoshi, Y., Hoshino, S., Ui-Tei, K., Saigo, K., Green, C. B., Sakaki, Y., and Tei, H. (2007) LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1 Proc. Natl. Acad. Sci. U.S.A. 104, 1859-1864
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 1859-1864
-
-
Kojima, S.1
Matsumoto, K.2
Hirose, M.3
Shimada, M.4
Nagano, M.5
Shigeyoshi, Y.6
Hoshino, S.7
Ui-Tei, K.8
Saigo, K.9
Green, C.B.10
Sakaki, Y.11
Tei, H.12
-
67
-
-
0037474511
-
Structural and functional analysis of 3′ untranslated region of mouse Period1 mRNA
-
Kojima, S., Hirose, M., Tokunaga, K., Sakaki, Y., and Tei, H. (2003) Structural and functional analysis of 3′ untranslated region of mouse Period1 mRNA Biochem. Biophys. Res. Commun. 301, 1-7
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.301
, pp. 1-7
-
-
Kojima, S.1
Hirose, M.2
Tokunaga, K.3
Sakaki, Y.4
Tei, H.5
-
68
-
-
78651324818
-
HnRNP Q and PTB modulate the circadian oscillation of mouse Rev-erb α via IRES-mediated translation
-
Kim, D. Y., Woo, K. C., Lee, K. H., Kim, T. D., and Kim, K. T. (2010) hnRNP Q and PTB modulate the circadian oscillation of mouse Rev-erb α via IRES-mediated translation Nucleic Acids Res. 38, 7068-7078
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7068-7078
-
-
Kim, D.Y.1
Woo, K.C.2
Lee, K.H.3
Kim, T.D.4
Kim, K.T.5
-
69
-
-
84898990515
-
AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation
-
Lee, K. H., Kim, S. H., Kim, H. J., Kim, W., Lee, H. R., Jung, Y., Choi, J. H., Hong, K. Y., Jang, S. K., and Kim, K. T. (2014) AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation Nucleic Acids Res. 42, 3590-3606
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3590-3606
-
-
Lee, K.H.1
Kim, S.H.2
Kim, H.J.3
Kim, W.4
Lee, H.R.5
Jung, Y.6
Choi, J.H.7
Hong, K.Y.8
Jang, S.K.9
Kim, K.T.10
-
70
-
-
84863012578
-
Rhythmic interaction between Period1 mRNA and hnRNP Q leads to circadian time-dependent translation
-
Lee, K. H., Woo, K. C., Kim, D. Y., Kim, T. D., Shin, J., Park, S. M., Jang, S. K., and Kim, K. T. (2012) Rhythmic interaction between Period1 mRNA and hnRNP Q leads to circadian time-dependent translation Mol. Cell. Biol. 32, 717-728
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 717-728
-
-
Lee, K.H.1
Woo, K.C.2
Kim, D.Y.3
Kim, T.D.4
Shin, J.5
Park, S.M.6
Jang, S.K.7
Kim, K.T.8
-
71
-
-
34147166984
-
Rhythmic control of AANAT translation by hnRNP Q in circadian melatonin production
-
Kim, T. D., Woo, K. C., Cho, S., Ha, D. C., Jang, S. K., and Kim, K. T. (2007) Rhythmic control of AANAT translation by hnRNP Q in circadian melatonin production Genes Dev. 21, 797-810
-
(2007)
Genes Dev.
, vol.21
, pp. 797-810
-
-
Kim, T.D.1
Woo, K.C.2
Cho, S.3
Ha, D.C.4
Jang, S.K.5
Kim, K.T.6
-
72
-
-
80455168277
-
HnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3
-
Kim, D. Y., Kwak, E., Kim, S. H., Lee, K. H., Woo, K. C., and Kim, K. T. (2011) hnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3 Nucleic Acids Res. 39, 8901-8914
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8901-8914
-
-
Kim, D.Y.1
Kwak, E.2
Kim, S.H.3
Lee, K.H.4
Woo, K.C.5
Kim, K.T.6
-
73
-
-
73549102403
-
Circadian amplitude of cryptochrome 1 is modulated by mRNA stability regulation via cytoplasmic hnRNP D oscillation
-
Woo, K. C., Ha, D. C., Lee, K. H., Kim, D. Y., Kim, T. D., and Kim, K. T. (2010) Circadian amplitude of cryptochrome 1 is modulated by mRNA stability regulation via cytoplasmic hnRNP D oscillation Mol. Cell. Biol. 30, 197-205
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 197-205
-
-
Woo, K.C.1
Ha, D.C.2
Lee, K.H.3
Kim, D.Y.4
Kim, T.D.5
Kim, K.T.6
-
74
-
-
58549089726
-
Mouse period 2 mRNA circadian oscillation is modulated by PTB-mediated rhythmic mRNA degradation
-
Woo, K. C., Kim, T. D., Lee, K. H., Kim, D. Y., Kim, W., Lee, K. Y., and Kim, K. T. (2009) Mouse period 2 mRNA circadian oscillation is modulated by PTB-mediated rhythmic mRNA degradation Nucleic Acids Res. 37, 26-37
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 26-37
-
-
Woo, K.C.1
Kim, T.D.2
Lee, K.H.3
Kim, D.Y.4
Kim, W.5
Lee, K.Y.6
Kim, K.T.7
-
75
-
-
33745852190
-
Essential role of 3′-untranslated region-mediated mRNA decay in circadian oscillations of mouse Period3 mRNA
-
Kwak, E., Kim, T. D., and Kim, K. T. (2006) Essential role of 3′-untranslated region-mediated mRNA decay in circadian oscillations of mouse Period3 mRNA J. Biol. Chem. 281, 19100-19106
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 19100-19106
-
-
Kwak, E.1
Kim, T.D.2
Kim, K.T.3
-
76
-
-
84882626496
-
Translational control of entrainment and synchrony of the suprachiasmatic circadian clock by mTOR/4E-BP1 signaling
-
Cao, R., Robinson, B., Xu, H., Gkogkas, C., Khoutorsky, A., Alain, T., Yanagiya, A., Nevarko, T., Liu, A. C., Amir, S., and Sonenberg, N. (2013) Translational control of entrainment and synchrony of the suprachiasmatic circadian clock by mTOR/4E-BP1 signaling Neuron 79, 712-724
-
(2013)
Neuron
, vol.79
, pp. 712-724
-
-
Cao, R.1
Robinson, B.2
Xu, H.3
Gkogkas, C.4
Khoutorsky, A.5
Alain, T.6
Yanagiya, A.7
Nevarko, T.8
Liu, A.C.9
Amir, S.10
Sonenberg, N.11
-
77
-
-
79953683670
-
Circadian regulation of mammalian target of rapamycin signaling in the mouse suprachiasmatic nucleus
-
Cao, R., Anderson, F. E., Jung, Y. J., Dziema, H., and Obrietan, K. (2011) Circadian regulation of mammalian target of rapamycin signaling in the mouse suprachiasmatic nucleus Neuroscience 181, 79-88
-
(2011)
Neuroscience
, vol.181
, pp. 79-88
-
-
Cao, R.1
Anderson, F.E.2
Jung, Y.J.3
Dziema, H.4
Obrietan, K.5
-
78
-
-
84873872342
-
The circadian clock coordinates ribosome biogenesis
-
Jouffe, C., Cretenet, G., Symul, L., Martin, E., Atger, F., Naef, F., and Gachon, F. (2013) The circadian clock coordinates ribosome biogenesis PLoS Biol. 11, e1001455
-
(2013)
PLoS Biol.
, vol.11
, pp. 1001455
-
-
Jouffe, C.1
Cretenet, G.2
Symul, L.3
Martin, E.4
Atger, F.5
Naef, F.6
Gachon, F.7
-
79
-
-
84862496485
-
Regulation of alternative splicing by the circadian clock and food related cues
-
McGlincy, N. J., Valomon, A., Chesham, J. E., Maywood, E. S., Hastings, M. H., and Ule, J. (2012) Regulation of alternative splicing by the circadian clock and food related cues Genome Biol. 13, R54
-
(2012)
Genome Biol.
, vol.13
, pp. 54
-
-
McGlincy, N.J.1
Valomon, A.2
Chesham, J.E.3
Maywood, E.S.4
Hastings, M.H.5
Ule, J.6
-
80
-
-
84875429298
-
Reflections on the history of pre-mRNA processing and highlights of current knowledge: A unified picture
-
Darnell, J. E., Jr. (2013) Reflections on the history of pre-mRNA processing and highlights of current knowledge: A unified picture RNA 19, 443-460
-
(2013)
RNA
, vol.19
, pp. 443-460
-
-
Darnell, J.E.1
-
81
-
-
84869859046
-
Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse
-
Khodor, Y. L., Menet, J. S., Tolan, M., and Rosbash, M. (2012) Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse RNA 18, 2174-2186
-
(2012)
RNA
, vol.18
, pp. 2174-2186
-
-
Khodor, Y.L.1
Menet, J.S.2
Tolan, M.3
Rosbash, M.4
-
82
-
-
84871581540
-
Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression
-
Kojima, S., Sher-Chen, E. L., and Green, C. B. (2012) Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression Genes Dev. 26, 2724-2736
-
(2012)
Genes Dev.
, vol.26
, pp. 2724-2736
-
-
Kojima, S.1
Sher-Chen, E.L.2
Green, C.B.3
-
83
-
-
84887875528
-
RNA-methylation-dependent RNA processing controls the speed of the circadian clock
-
Fustin, J. M., Doi, M., Yamaguchi, Y., Hida, H., Nishimura, S., Yoshida, M., Isagawa, T., Morioka, M. S., Kakeya, H., Manabe, I., and Okamura, H. (2013) RNA-methylation-dependent RNA processing controls the speed of the circadian clock Cell 155, 793-806
-
(2013)
Cell
, vol.155
, pp. 793-806
-
-
Fustin, J.M.1
Doi, M.2
Yamaguchi, Y.3
Hida, H.4
Nishimura, S.5
Yoshida, M.6
Isagawa, T.7
Morioka, M.S.8
Kakeya, H.9
Manabe, I.10
Okamura, H.11
-
84
-
-
84867670963
-
Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally
-
Morf, J., Rey, G., Schneider, K., Stratmann, M., Fujita, J., Naef, F., and Schibler, U. (2012) Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally Science 338, 379-383
-
(2012)
Science
, vol.338
, pp. 379-383
-
-
Morf, J.1
Rey, G.2
Schneider, K.3
Stratmann, M.4
Fujita, J.5
Naef, F.6
Schibler, U.7
-
85
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
Dominissini, D., Moshitch-Moshkovitz, S., Schwartz, S., Salmon-Divon, M., Ungar, L., Osenberg, S., Cesarkas, K., Jacob-Hirsch, J., Amariglio, N., Kupiec, M., Sorek, R., and Rechavi, G. (2012) Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq Nature 485, 201-206
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
Moshitch-Moshkovitz, S.2
Schwartz, S.3
Salmon-Divon, M.4
Ungar, L.5
Osenberg, S.6
Cesarkas, K.7
Jacob-Hirsch, J.8
Amariglio, N.9
Kupiec, M.10
Sorek, R.11
Rechavi, G.12
-
86
-
-
84864094076
-
Native elongating transcript sequencing (NET-seq)
-
(Ausubel, F. M. Eds.) Chapter 4, Unit 4, 14, pp, Wiley, New York
-
Churchman, L. S. and Weissman, J. S. (2012) Native elongating transcript sequencing (NET-seq). Current Protocols in Molecular Biology (Ausubel, F. M., Eds.) Chapter 4, Unit 4, 14, pp 11-17, Wiley, New York.
-
(2012)
Current Protocols in Molecular Biology
, pp. 11-17
-
-
Churchman, L.S.1
Weissman, J.S.2
-
87
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core, L. J., Waterfall, J. J., and Lis, J. T. (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters Science 322, 1845-1848
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
88
-
-
84934437354
-
CLIP: Crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins
-
Jensen, K. B. and Darnell, R. B. (2008) CLIP: Crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins Methods Mol. Biol. 488, 85-98
-
(2008)
Methods Mol. Biol.
, vol.488
, pp. 85-98
-
-
Jensen, K.B.1
Darnell, R.B.2
-
89
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
Zhao, J., Ohsumi, T. K., Kung, J. T., Ogawa, Y., Grau, D. J., Sarma, K., Song, J. J., Kingston, R. E., Borowsky, M., and Lee, J. T. (2010) Genome-wide identification of polycomb-associated RNAs by RIP-seq Mol. Cell 40, 939-953
-
(2010)
Mol. Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
Ohsumi, T.K.2
Kung, J.T.3
Ogawa, Y.4
Grau, D.J.5
Sarma, K.6
Song, J.J.7
Kingston, R.E.8
Borowsky, M.9
Lee, J.T.10
-
90
-
-
84868252050
-
Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling
-
Tani, H. and Akimitsu, N. (2012) Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling RNA Biol. 9, 1233-1238
-
(2012)
RNA Biol.
, vol.9
, pp. 1233-1238
-
-
Tani, H.1
Akimitsu, N.2
-
91
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
Schneider, C., Kudla, G., Wlotzka, W., Tuck, A., and Tollervey, D. (2012) Transcriptome-wide analysis of exosome targets Mol. Cell 48, 422-433
-
(2012)
Mol. Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
92
-
-
84896405087
-
TAIL-seq: Genome-wide Determination of Poly(A) Tail Length and 3′ End Modifications
-
Chang, H., Lim, J., Ha, M., and Kim, V. N. (2014) TAIL-seq: Genome-wide Determination of Poly(A) Tail Length and 3′ End Modifications Mol. Cell 53, 1044-1052
-
(2014)
Mol. Cell
, vol.53
, pp. 1044-1052
-
-
Chang, H.1
Lim, J.2
Ha, M.3
Kim, V.N.4
-
93
-
-
84897571308
-
Poly(A)-tail profiling reveals an embryonic switch in translational control
-
Subtelny, A. O., Eichhorn, S. W., Chen, G. R., Sive, H., and Bartel, D. P. (2014) Poly(A)-tail profiling reveals an embryonic switch in translational control Nature 508, 66-71
-
(2014)
Nature
, vol.508
, pp. 66-71
-
-
Subtelny, A.O.1
Eichhorn, S.W.2
Chen, G.R.3
Sive, H.4
Bartel, D.P.5
-
94
-
-
84893358533
-
Landscape and variation of RNA secondary structure across the human transcriptome
-
Wan, Y., Qu, K., Zhang, Q. C., Flynn, R. A., Manor, O., Ouyang, Z., Zhang, J., Spitale, R. C., Snyder, M. P., Segal, E., and Chang, H. Y. (2014) Landscape and variation of RNA secondary structure across the human transcriptome Nature 505, 706-709
-
(2014)
Nature
, vol.505
, pp. 706-709
-
-
Wan, Y.1
Qu, K.2
Zhang, Q.C.3
Flynn, R.A.4
Manor, O.5
Ouyang, Z.6
Zhang, J.7
Spitale, R.C.8
Snyder, M.P.9
Segal, E.10
Chang, H.Y.11
-
95
-
-
84893351549
-
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
-
Rouskin, S., Zubradt, M., Washietl, S., Kellis, M., and Weissman, J. S. (2014) Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo Nature 505, 701-705
-
(2014)
Nature
, vol.505
, pp. 701-705
-
-
Rouskin, S.1
Zubradt, M.2
Washietl, S.3
Kellis, M.4
Weissman, J.S.5
-
96
-
-
84892372347
-
N6-methyladenosine-dependent regulation of messenger RNA stability
-
Wang, X., Lu, Z., Gomez, A., Hon, G. C., Yue, Y., Han, D., Fu, Y., Parisien, M., Dai, Q., Jia, G., Ren, B., Pan, T., and He, C. (2014) N6-methyladenosine-dependent regulation of messenger RNA stability Nature 505, 117-120
-
(2014)
Nature
, vol.505
, pp. 117-120
-
-
Wang, X.1
Lu, Z.2
Gomez, A.3
Hon, G.C.4
Yue, Y.5
Han, D.6
Fu, Y.7
Parisien, M.8
Dai, Q.9
Jia, G.10
Ren, B.11
Pan, T.12
He, C.13
-
97
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann, M. (2006) Functional and quantitative proteomics using SILAC Nat. Rev. Mol. Cell Biol. 7, 952-958
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
98
-
-
84893799587
-
In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism
-
Robles, M. S., Cox, J., and Mann, M. (2014) In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism PLoS Genet. 10, e1004047
-
(2014)
PLoS Genet.
, vol.10
, pp. 1004047
-
-
Robles, M.S.1
Cox, J.2
Mann, M.3
-
99
-
-
0025630643
-
Expression of the liver-enriched transcriptional activator protein DBP follows a stringent circadian rhythm
-
Wuarin, J. and Schibler, U. (1990) Expression of the liver-enriched transcriptional activator protein DBP follows a stringent circadian rhythm Cell 63, 1257-1266
-
(1990)
Cell
, vol.63
, pp. 1257-1266
-
-
Wuarin, J.1
Schibler, U.2
-
100
-
-
77954203032
-
Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation
-
Yang, R. and Su, Z. (2010) Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation Bioinformatics 26, i168-i174
-
(2010)
Bioinformatics
, vol.26
, pp. 168-i174
-
-
Yang, R.1
Su, Z.2
-
101
-
-
77957266573
-
JTK-CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
-
Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010) JTK-CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets J. Biol. Rhythms 25, 372-380
-
(2010)
J. Biol. Rhythms
, vol.25
, pp. 372-380
-
-
Hughes, M.E.1
Hogenesch, J.B.2
Kornacker, K.3
-
102
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M. D. and Oshlack, A. (2010) A scaling normalization method for differential expression analysis of RNA-seq data Genome Biol. 11, R25
-
(2010)
Genome Biol.
, vol.11
, pp. 25
-
-
Robinson, M.D.1
Oshlack, A.2
-
103
-
-
34249097203
-
Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression
-
Siepka, S. M., Yoo, S. H., Park, J., Song, W., Kumar, V., Hu, Y., Lee, C., and Takahashi, J. S. (2007) Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression Cell 129, 1011-1023
-
(2007)
Cell
, vol.129
, pp. 1011-1023
-
-
Siepka, S.M.1
Yoo, S.H.2
Park, J.3
Song, W.4
Kumar, V.5
Hu, Y.6
Lee, C.7
Takahashi, J.S.8
-
104
-
-
84874768419
-
Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm
-
Yoo, S. H., Mohawk, J. A., Siepka, S. M., Shan, Y., Huh, S. K., Hong, H. K., Kornblum, I., Kumar, V., Koike, N., Xu, M., Nussbaum, J., Liu, X., Chen, Z., Chen, Z. J., Green, C. B., and Takahashi, J. S. (2013) Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm Cell 152, 1091-1105
-
(2013)
Cell
, vol.152
, pp. 1091-1105
-
-
Yoo, S.H.1
Mohawk, J.A.2
Siepka, S.M.3
Shan, Y.4
Huh, S.K.5
Hong, H.K.6
Kornblum, I.7
Kumar, V.8
Koike, N.9
Xu, M.10
Nussbaum, J.11
Liu, X.12
Chen, Z.13
Chen, Z.J.14
Green, C.B.15
Takahashi, J.S.16
-
105
-
-
84874772651
-
FBXL21 regulates oscillation of the circadian clock through ubiquitination and stabilization of cryptochromes
-
Hirano, A., Yumimoto, K., Tsunematsu, R., Matsumoto, M., Oyama, M., Kozuka-Hata, H., Nakagawa, T., Lanjakornsiripan, D., Nakayama, K. I., and Fukada, Y. (2013) FBXL21 regulates oscillation of the circadian clock through ubiquitination and stabilization of cryptochromes Cell 152, 1106-1118
-
(2013)
Cell
, vol.152
, pp. 1106-1118
-
-
Hirano, A.1
Yumimoto, K.2
Tsunematsu, R.3
Matsumoto, M.4
Oyama, M.5
Kozuka-Hata, H.6
Nakagawa, T.7
Lanjakornsiripan, D.8
Nakayama, K.I.9
Fukada, Y.10
-
106
-
-
84859459231
-
Coordination of the transcriptome and metabolome by the circadian clock
-
Eckel-Mahan, K. L., Patel, V. R., Mohney, R. P., Vignola, K. S., Baldi, P., and Sassone-Corsi, P. (2012) Coordination of the transcriptome and metabolome by the circadian clock Proc. Natl. Acad. Sci. U.S.A. 109, 5541-5546
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 5541-5546
-
-
Eckel-Mahan, K.L.1
Patel, V.R.2
Mohney, R.P.3
Vignola, K.S.4
Baldi, P.5
Sassone-Corsi, P.6
-
107
-
-
84891798215
-
TISdb: A database for alternative translation initiation in mammalian cells
-
Wan, J. and Qian, S. B. (2014) TISdb: A database for alternative translation initiation in mammalian cells Nucleic Acids Res. 42, D845-D850
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 845-D850
-
-
Wan, J.1
Qian, S.B.2
|