메뉴 건너뛰기




Volumn 15, Issue 6, 2014, Pages 561-571

Evaluating protein-protein interaction (PPI) networks for diseases pathway, target discovery, and drug-design using 'In silico pharmacology'

Author keywords

Drug discovery; PPI network

Indexed keywords

ABC TRANSPORTER A1; ACETYLCHOLINESTERASE; ANGIOTENSIN 1 RECEPTOR; APOLIPOPROTEIN; BETA CATENIN; CYCLIC NUCLEOTIDE; FRIZZLED PROTEIN; GLYCOGEN SYNTHASE KINASE 3BETA; HYDROXYMETHYLGLUTARYL COENZYME A REDUCTASE; INSULIN; LOW DENSITY LIPOPROTEIN RECEPTOR; N METHYL DEXTRO ASPARTIC ACID RECEPTOR 1; OROSOMUCOID; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHODIESTERASE III; PROTEIN NR1 1A; PROTEIN NR1 1B; SOMATOMEDIN; SOMATOMEDIN C RECEPTOR; SPLEEN EXONUCLEASE; SREBP CLEAVAGE ACTIVATING PROTEIN; STEROL REGULATORY ELEMENT BINDING PROTEIN; UNCLASSIFIED DRUG; PROTEIN;

EID: 84906897091     PISSN: 13892037     EISSN: 18755550     Source Type: Journal    
DOI: 10.2174/1389203715666140724090153     Document Type: Review
Times cited : (18)

References (181)
  • 1
    • 55249097179 scopus 로고    scopus 로고
    • The identification of benefit in medical intervention: An overview and suggestions for process
    • Stang, P.E.; Pham, S.V.; Kinchen, K.; Raff, S.B.; Mussen, F.; Gondek, K. The identification of benefit in medical intervention: an overview and suggestions for process. Am. J. Ther., 2000 15 (5), 495-503.
    • (2000) Am. J. Ther. , vol.15 , Issue.5 , pp. 495-503
    • Stang, P.E.1    Pham, S.V.2    Kinchen, K.3    Raff, S.B.4    Mussen, F.5    Gondek, K.6
  • 2
    • 43049183607 scopus 로고    scopus 로고
    • Natural products as a robust source of new drugs and drug leads: Past successes and Present day issues
    • Rishton, G.M. Natural products as a robust source of new drugs and drug leads: past successes and Present day issues. Am. J. Cardiol., 2008 101, 43D-49D.
    • (2008) Am. J. Cardiol. , vol.101
    • Rishton, G.M.1
  • 5
    • 0034677966 scopus 로고    scopus 로고
    • Drug discovery: A historical perspective
    • Drews, J. Drug discovery: a historical perspective. Science, 2000 287 (5460), 1960-1964.
    • (2000) Science , vol.287 , Issue.5460 , pp. 1960-1964
    • Drews, J.1
  • 6
    • 59249090675 scopus 로고    scopus 로고
    • A 96-well flow cytometric screening assay for detecting in vitro phospholipidosis-induction in the drug discovery phase
    • Natalie, M.; Margino, S.; Erik, H.; Annelieke, P.; Geert, V.; Philippe, V. A 96-well flow cytometric screening assay for detecting in vitro phospholipidosis-induction in the drug discovery phase. Toxicol. In vitro, 2009 23 (2), 217-226.
    • (2009) Toxicol. In vitro , vol.23 , Issue.2 , pp. 217-226
    • Natalie, M.1    Margino, S.2    Erik, H.3    Annelieke, P.4    Geert, V.5    Philippe, V.6
  • 7
    • 70449410968 scopus 로고    scopus 로고
    • Recent advances of fluorescent technologies for drug discovery and development
    • Chakraborty, C.; Hsu, C.H.; Wen, Z.H.; Lin, C.S. Recent advances of fluorescent technologies for drug discovery and development. Curr. Pharm. Des., 2009 15 (30), 3552-3570.
    • (2009) Curr. Pharm. Des. , vol.15 , Issue.30 , pp. 3552-3570
    • Chakraborty, C.1    Hsu, C.H.2    Wen, Z.H.3    Lin, C.S.4
  • 8
    • 0031941004 scopus 로고    scopus 로고
    • A green fluorescent protein (GFP) microplate assay (GFPMA) for the high throughput screening of compounds against Mycobacterium tuberculosis was developed
    • Collins, L.A.; Torrero, M.N.; Franzblau, S.G. A green fluorescent protein (GFP) microplate assay (GFPMA) for the high throughput screening of compounds against Mycobacterium tuberculosis was developed. Antimicrob. Agents Chemother., 1998 42, 344-347.
    • (1998) Antimicrob. Agents Chemother. , vol.42 , pp. 344-347
    • Collins, L.A.1    Torrero, M.N.2    Franzblau, S.G.3
  • 9
    • 0037374498 scopus 로고    scopus 로고
    • The price of innovation: New estimates of drug development costs
    • DiMasi, J.A.; Hansen, R.W.; Grabowski, H.G. The price of innovation: new estimates of drug development costs. J. Health Econ., 2003 22, 151-185.
    • (2003) J. Health Econ. , vol.22 , pp. 151-185
    • DiMasi, J.A.1    Hansen, R.W.2    Grabowski, H.G.3
  • 11
    • 0036489213 scopus 로고    scopus 로고
    • The evolving role of information technology in the drug discovery process
    • Augen, J. The evolving role of information technology in the drug discovery process. Drug Discov. Today, 2002 7 (5), 315-323.
    • (2002) Drug Discov. Today , vol.7 , Issue.5 , pp. 315-323
    • Augen, J.1
  • 13
    • 0028929401 scopus 로고
    • Pharmacology of competitive inhibitors of HMG-CoA reductase
    • Corsini, A.; Maggi, F.M.; Catapano, A.L. Pharmacology of competitive inhibitors of HMG-CoA reductase. Pharmacol. Res., 1995 31, 9-27.
    • (1995) Pharmacol. Res. , vol.31 , pp. 9-27
    • Corsini, A.1    Maggi, F.M.2    Catapano, A.L.3
  • 15
    • 34548319111 scopus 로고    scopus 로고
    • In silico pharmacology for drug discovery: Applications to targets and beyond
    • Ekins, S.; Mestres, J.; Testa, B. In silico pharmacology for drug discovery: applications to targets and beyond. Br. J. Pharmacol., 2007 152 (1), 21-37.
    • (2007) Br. J. Pharmacol. , vol.152 , Issue.1 , pp. 21-37
    • Ekins, S.1    Mestres, J.2    Testa, B.3
  • 16
    • 84873167858 scopus 로고    scopus 로고
    • The multi-target capabilities of the compounds in a TCM used to treat sepsis and their in silico pharmacology
    • Ma, S.; Feng, C.; Zhang, X.; Dai, G.; Li, C.; Cheng, X.; Liu, P.; Ju, W.; Yu, H. The multi-target capabilities of the compounds in a TCM used to treat sepsis and their in silico pharmacology. Complement Ther. Med., 2013 21 (1), 35-41.
    • (2013) Complement Ther. Med. , vol.21 , Issue.1 , pp. 35-41
    • Ma, S.1    Feng, C.2    Zhang, X.3    Dai, G.4    Li, C.5    Cheng, X.6    Liu, P.7    Ju, W.8    Yu, H.9
  • 17
    • 79551649916 scopus 로고    scopus 로고
    • Landscape mapping of functional proteins in insulin signal transduction and insulin resistance: A network based protein-protein interaction analysis
    • Chakraborty, C.; Roy, S.S.; Hsu, M.J.; Agoramoorthy, G. Landscape mapping of functional proteins in insulin signal transduction and insulin resistance: A network based protein-protein interaction analysis. PLoS ONE, 2001 6 (1), e16388.
    • (2001) PLoS ONE , vol.6 , Issue.1
    • Chakraborty, C.1    Roy, S.S.2    Hsu, M.J.3    Agoramoorthy, G.4
  • 18
    • 78951495883 scopus 로고    scopus 로고
    • Network building of proteins in a biochemical pathway: A computational biology related model for target discovery and drug-design
    • Chakraborty, C.; Roy, S.S.; Hsu, C.H.; Wen, Z.H.; Lin, C.S. Network building of proteins in a biochemical pathway: a computational biology related model for target discovery and drug-design. Curr. Bioinformatics, 2010 5 (4), 290-295.
    • (2010) Curr. Bioinformatics , vol.5 , Issue.4 , pp. 290-295
    • Chakraborty, C.1    Roy, S.S.2    Hsu, C.H.3    Wen, Z.H.4    Lin, C.S.5
  • 19
    • 14944383798 scopus 로고    scopus 로고
    • The evolving role of natural products in drug discovery
    • Koehn, F.E.; Carter, G.T. The evolving role of natural products in drug discovery. Nat. Rev. Drug Discov., 2005 4 (3), 206-220.
    • (2005) Nat. Rev. Drug Discov. , vol.4 , Issue.3 , pp. 206-220
    • Koehn, F.E.1    Carter, G.T.2
  • 20
    • 44249098800 scopus 로고    scopus 로고
    • Natural products to drugs: Natural product-derived compounds in clinical trials
    • Butler, M.S. Natural products to drugs: natural product-derived compounds in clinical trials. Nat. Prod. Rep., 2008 25, 475-516.
    • (2008) Nat. Prod. Rep. , vol.25 , pp. 475-516
    • Butler, M.S.1
  • 21
    • 52049109838 scopus 로고    scopus 로고
    • Natural products in drug discovery
    • Harvey, A.L. Natural products in drug discovery. Drug Discov. Today, 2008 13 (19-20), 894-901.
    • (2008) Drug Discov. Today , vol.13 , Issue.19-20 , pp. 894-901
    • Harvey, A.L.1
  • 23
    • 84888291067 scopus 로고    scopus 로고
    • Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: Where drug discovery went wrong and how to fix it
    • Kell, D.B. Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: where drug discovery went wrong and how to fix it. FEBS J., 2013 280 (23), 5957-5980.
    • (2013) FEBS J. , vol.280 , Issue.23 , pp. 5957-5980
    • Kell, D.B.1
  • 24
    • 0037404094 scopus 로고    scopus 로고
    • Stategic trends in the drug industry
    • Drews, J. Stategic trends in the drug industry. Drug Discov. Today, 2003 8, 411-420.
    • (2003) Drug Discov. Today , vol.8 , pp. 411-420
    • Drews, J.1
  • 25
    • 0036489213 scopus 로고    scopus 로고
    • The evolving role of information technology in the drug discovery process
    • Augen, J. The evolving role of information technology in the drug discovery process. Drug Discov. Today, 2002 7, 315-323.
    • (2002) Drug Discov. Today , vol.7 , pp. 315-323
    • Augen, J.1
  • 26
    • 0038255018 scopus 로고    scopus 로고
    • Chemoinformatics and drug discovery
    • Xu, J.; Hagler, A. Chemoinformatics and drug discovery. Molecules, 2002 7 (8), 566-600.
    • (2002) Molecules , vol.7 , Issue.8 , pp. 566-600
    • Xu, J.1    Hagler, A.2
  • 27
    • 65649122673 scopus 로고    scopus 로고
    • Reverse pharmacology and systems approaches for drug discovery and development
    • Patwardhan, B.; Vaidya, A. D.; Chorghade, M.; Joshi, S. P. Reverse pharmacology and systems approaches for drug discovery and development. Curr. Bioact. Compd., 2008 4 (4), 201-212.
    • (2008) Curr. Bioact. Compd. , vol.4 , Issue.4 , pp. 201-212
    • Patwardhan, B.1    Vaidya, A.D.2    Chorghade, M.3    Joshi, S.P.4
  • 28
    • 0034077507 scopus 로고    scopus 로고
    • Sequencing the entire genomes of freeliving organisms: The foundation of pharmacology in the new millennium
    • Broder, S.; Venter, J.C. Sequencing the entire genomes of freeliving organisms: the foundation of pharmacology in the new millennium. Ann. Rev. Pharmacol. Toxicol., 2000 40, 97-132.
    • (2000) Ann. Rev. Pharmacol. Toxicol. , vol.40 , pp. 97-132
    • Broder, S.1    Venter, J.C.2
  • 29
    • 0037441560 scopus 로고    scopus 로고
    • Fulfilling the promise: Drug discovery in the postgenomic era
    • Chanda, S.K.; Caldwell, J.S. Fulfilling the promise: drug discovery in the postgenomic era. Drug Discov. Today, 2003 8 (4), 168-174.
    • (2003) Drug Discov. Today , vol.8 , Issue.4 , pp. 168-174
    • Chanda, S.K.1    Caldwell, J.S.2
  • 30
    • 0037441522 scopus 로고    scopus 로고
    • Advancing drug discovery through systems biology
    • Davidov, E.; Holland, J.; Marple, E.; Naylor, S. Advancing drug discovery through systems biology. Drug Discov. Today, 2003 8 (4), 175-183.
    • (2003) Drug Discov. Today , vol.8 , Issue.4 , pp. 175-183
    • Davidov, E.1    Holland, J.2    Marple, E.3    Naylor, S.4
  • 31
    • 61849148824 scopus 로고    scopus 로고
    • Natural products and drug discovery. Can thousands of years of ancient medical knowledge lead us to new and powerful drug combinations in the fight against cancer and dementia?
    • Ji, H.F.; Li, X.J.; Zhang, H.Y. Natural products and drug discovery. Can thousands of years of ancient medical knowledge lead us to new and powerful drug combinations in the fight against cancer and dementia? EMBO Rep., 2009, 10(3), 194-200.
    • (2009) EMBO Rep. , vol.10 , Issue.3 , pp. 194-200
    • Ji, H.F.1    Li, X.J.2    Zhang, H.Y.3
  • 32
    • 15044349115 scopus 로고    scopus 로고
    • The efficiency of multitarget drugs: The network approach might help drug design
    • Csermely, P.; Agoston, V.; Pongor, S. The efficiency of multitarget drugs: the network approach might help drug design. Trends Pharmacol. Sci., 2005 26, 178-182.
    • (2005) Trends Pharmacol. Sci. , vol.26 , pp. 178-182
    • Csermely, P.1    Agoston, V.2    Pongor, S.3
  • 33
    • 33746622984 scopus 로고    scopus 로고
    • Strategies for optimizing combinations of molecularly targeted anticancer agents
    • Dancey, J.E.; Chen, H.X. Strategies for optimizing combinations of molecularly targeted anticancer agents. Nat. Rev. Drug Discov., 2006 5, 649-659.
    • (2006) Nat. Rev. Drug Discov. , vol.5 , pp. 649-659
    • Dancey, J.E.1    Chen, H.X.2
  • 34
    • 33845762340 scopus 로고    scopus 로고
    • Multi-target therapeutics: When the whole is greater than the sum of the parts
    • Zimmermann, G. R.; Lehár, J.; Keith, C.T. Multi-target therapeutics: when the whole is greater than the sum of the parts. Drug Discov. Today, 2007 12, 34-42.
    • (2007) Drug Discov. Today , vol.12 , pp. 34-42
    • Zimmermann, G.R.1    Lehár, J.2    Keith, C.T.3
  • 35
    • 0034792736 scopus 로고    scopus 로고
    • Classical vs reverse pharmacology in drug discovery
    • Takenaka, T. Classical vs reverse pharmacology in drug discovery. BJU Int., 2001 88 (2), 7-10.
    • (2001) BJU Int. , vol.88 , Issue.2 , pp. 7-10
    • Takenaka, T.1
  • 37
    • 0037457213 scopus 로고    scopus 로고
    • Hitting the target
    • Smith, C. Hitting the target. Nature, 2003 422, 341-347.
    • (2003) Nature , vol.422 , pp. 341-347
    • Smith, C.1
  • 42
    • 33749234216 scopus 로고    scopus 로고
    • Drugs, their targets and the nature and number of drug targets
    • Imming, P.; Sinning, C.; Meyer, A. Drugs, their targets and the nature and number of drug targets. Nat. Rev. Drug Discov., 2006 5, 821-834.
    • (2006) Nat. Rev. Drug Discov. , vol.5 , pp. 821-834
    • Imming, P.1    Sinning, C.2    Meyer, A.3
  • 44
    • 29144531173 scopus 로고    scopus 로고
    • The druggable genome: An update
    • Russ, A.P.; Lampel, S. The druggable genome: an update. Drug Discov. Today, 2005 10, 1607-1610.
    • (2005) Drug Discov. Today , vol.10 , pp. 1607-1610
    • Russ, A.P.1    Lampel, S.2
  • 45
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • Bairoch, A. The ENZYME database in 2000. Nucleic Acids Res., 2000 28 (1), 304-305.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.1 , pp. 304-305
    • Bairoch, A.1
  • 46
    • 27544462342 scopus 로고    scopus 로고
    • Role of protein dynamics in reaction rate enhancement by enzymes
    • Agarwal, P.K. Role of protein dynamics in reaction rate enhancement by enzymes. J. Am. Chem. Soc., 2005 127 (43), 15248-15256.
    • (2005) J. Am. Chem. Soc. , vol.127 , Issue.43 , pp. 15248-15256
    • Agarwal, P.K.1
  • 47
    • 0347765874 scopus 로고    scopus 로고
    • Fluorescent probes for proteolysis: Tools for drug discovery
    • Neefjes, J.; Dantuma, N.P. Fluorescent probes for proteolysis: tools for drug discovery. Nat. Rev. Drug Discov., 2004 3, 58-69.
    • (2004) Nat. Rev. Drug Discov. , vol.3 , pp. 58-69
    • Neefjes, J.1    Dantuma, N.P.2
  • 48
    • 77950914672 scopus 로고    scopus 로고
    • PI3K/Akt signalling pathway specific inhibitors: A novel strategy to sensitize cancer cells to anti-cancer drugs
    • Falasca, M. PI3K/Akt signalling pathway specific inhibitors: a novel strategy to sensitize cancer cells to anti-cancer drugs. Curr. Pharm. Des., 2010 16 (12), 1410-1416.
    • (2010) Curr. Pharm. Des. , vol.16 , Issue.12 , pp. 1410-1416
    • Falasca, M.1
  • 49
    • 33748308883 scopus 로고    scopus 로고
    • Targeting proteases: Successes, failures and future prospects
    • Turk, B. Targeting proteases: successes, failures and future prospects. Nat. Rev. Drug Discov., 2006 5 (9), 785-799.
    • (2006) Nat. Rev. Drug Discov. , vol.5 , Issue.9 , pp. 785-799
    • Turk, B.1
  • 50
    • 77956310878 scopus 로고    scopus 로고
    • Emerging principles in protease-based drug discovery
    • Drag, M.; Salvesen, G.S. Emerging principles in protease-based drug discovery. Nat. Rev. Drug Discov., 2010 9 (9), 690-701.
    • (2010) Nat. Rev. Drug Discov. , vol.9 , Issue.9 , pp. 690-701
    • Drag, M.1    Salvesen, G.S.2
  • 51
    • 34247574729 scopus 로고    scopus 로고
    • Reticulated platelets and uninhibited COX_1 and COX_2 decrease the antiplatelet effects of aspirin
    • Guthikonda, S.; Lev, E.I.; Patel, R.; DeLao, T.; Bergeron, A.L.; Dong, J.F.; Kleiman, N.S. Reticulated platelets and uninhibited COX_1 and COX_2 decrease the antiplatelet effects of aspirin. J. Thromb. Haemost., 2007 5 (3), 490-496.
    • (2007) J. Thromb. Haemost. , vol.5 , Issue.3 , pp. 490-496
    • Guthikonda, S.1    Lev, E.I.2    Patel, R.3    DeLao, T.4    Bergeron, A.L.5    Dong, J.F.6    Kleiman, N.S.7
  • 52
    • 84871103852 scopus 로고    scopus 로고
    • Signal Transduction Pathways (MAPKs, NF-_B, and C/EBP) Regulating COX-2 Expression in Nasal Fibroblasts from Asthma Patients with Aspirin Intolerance
    • Garcia-Garcia, F.J.; Mullol, J.; Perez-Gonzalez, M.; Pujols, L.; Alobid, I.; Roca-Ferrer, J.; Picado, C. Signal Transduction Pathways (MAPKs, NF-_B, and C/EBP) Regulating COX-2 Expression in Nasal Fibroblasts from Asthma Patients with Aspirin Intolerance. PloS one, 2012 7 (12), e51281.
    • (2012) PloS one , vol.7 , Issue.12
    • Garcia-Garcia, F.J.1    Mullol, J.2    Perez-Gonzalez, M.3    Pujols, L.4    Alobid, I.5    Roca-Ferrer, J.6    Picado, C.7
  • 54
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.L.; Oltvai, Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet., 2004 5, 101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 56
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H.; Mason, S.; Barabasi, A.-L.; Oltvai, Z. Lethality and centrality in protein networks. Nature, 2001 411, 41-42.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.2    Barabasi, A.-L.3    Oltvai, Z.4
  • 58
    • 0033555859 scopus 로고    scopus 로고
    • Emergent properties of networks of biological signaling pathways
    • Bhalla, U.S.; Iyengar, R. Emergent properties of networks of biological signaling pathways. Science, 1999 283 (5400), 381-387.
    • (1999) Science , vol.283 , Issue.5400 , pp. 381-387
    • Bhalla, U.S.1    Iyengar, R.2
  • 61
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H.; Mason, S.P.; Barabási, A.L.; Oltvai, Z.N. Lethality and centrality in protein networks. Nature, 2001 411 (6833), 41-42.
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabási, A.L.3    Oltvai, Z.N.4
  • 64
    • 14844311241 scopus 로고    scopus 로고
    • Interactome modeling
    • Vidal, M. Interactome modeling. FEBS Lett., 2005, 579, 1834-1838.
    • (2005) FEBS Lett. , vol.579 , pp. 1834-1838
    • Vidal, M.1
  • 65
    • 78649890540 scopus 로고    scopus 로고
    • A global protein-lipid interactome map
    • Brehme, M.; Vidal, M. A global protein-lipid interactome map. Mol. Syst. Biol., 2010 6, 6443.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 6443
    • Brehme, M.1    Vidal, M.2
  • 67
    • 71349087490 scopus 로고    scopus 로고
    • A unifying view of 21st century systems biology
    • Vidal, M. A unifying view of 21st century systems biology. FEBS Lett., 2009 583 (24), 3891-3894.
    • (2009) FEBS Lett. , vol.583 , Issue.24 , pp. 3891-3894
    • Vidal, M.1
  • 68
    • 0030963019 scopus 로고    scopus 로고
    • Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
    • Fromont-Racine, M.; Rain, J.C.; Legrain, P. Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat. Genet., 1997 16 (3), 277-282.
    • (1997) Nat. Genet. , vol.16 , Issue.3 , pp. 277-282
    • Fromont-Racine, M.1    Rain, J.C.2    Legrain, P.3
  • 69
    • 0002653508 scopus 로고    scopus 로고
    • The reverse two-hybrid system
    • In Bartels P, Fields S, editors. New York: Oxford University Press
    • Vidal, M. The reverse two-hybrid system. In: Bartels P, Fields S, editors. The Yeast Two-Hybrid System. New York: Oxford University Press, 1997, pp. 109-147.
    • (1997) The Yeast Two-Hybrid System , pp. 109-147
    • Vidal, M.1
  • 72
    • 84862665090 scopus 로고    scopus 로고
    • Nodal Dynamics, Not Degree Distributions, Determine the Structural Controllability of Complex Networks
    • Cowan, N.J.; Chastain, E.J.; Vilhena, D.A.; Freudenberg, J.S.; Bergstrom, C.T. Nodal Dynamics, Not Degree Distributions, Determine the Structural Controllability of Complex Networks. PLoS ONE, 2012 7 (6), e38398.
    • (2012) PLoS ONE , vol.7 , Issue.6
    • Cowan, N.J.1    Chastain, E.J.2    Vilhena, D.A.3    Freudenberg, J.S.4    Bergstrom, C.T.5
  • 73
    • 36048975777 scopus 로고    scopus 로고
    • Complex network synchronizability: Analysis and control
    • Duan, Z.; Chen, G.; Huang, L. Complex network synchronizability: Analysis and control. Phys. Rev. E., 2007 76, 056103.
    • (2007) Phys. Rev. E. , vol.76 , pp. 056103
    • Duan, Z.1    Chen, G.2    Huang, L.3
  • 74
    • 56349095879 scopus 로고    scopus 로고
    • Criteria for global pinningcontrollability of complex networks
    • Porfiri, M.; di Bernardo, M. Criteria for global pinningcontrollability of complex networks. Automatica, 2008 44, 3100-3106.
    • (2008) Automatica , vol.44 , pp. 3100-3106
    • Porfiri, M.1    di Bernardo, M.2
  • 75
    • 73549083239 scopus 로고    scopus 로고
    • The Modular Organization of Protein Interactions in Escherichia coli
    • Peregrín-Alvarez, J.M.; Xiong, X.; Su, C.; Parkinson, J. The Modular Organization of Protein Interactions in Escherichia coli. PLoS Comput. Biol., 2009 5 (10), e1000523.
    • (2009) PLoS Comput. Biol. , vol.5 , Issue.10
    • Peregrín-Alvarez, J.M.1    Xiong, X.2    Su, C.3    Parkinson, J.4
  • 76
  • 77
    • 18944391092 scopus 로고    scopus 로고
    • Biological networks and analysis of experimental data in drug discovery
    • Nikolsky, Y.; Nikolskaya, T.; Bugrim, A. Biological networks and analysis of experimental data in drug discovery. Drug Discov. Today, 2005 10 (9), 653-662.
    • (2005) Drug Discov. Today , vol.10 , Issue.9 , pp. 653-662
    • Nikolsky, Y.1    Nikolskaya, T.2    Bugrim, A.3
  • 78
    • 84878849013 scopus 로고    scopus 로고
    • Mining functional subgraphs from cancer protein-protein interaction networks
    • Shen, R.; Goonesekere, N.C.; Guda, C. Mining functional subgraphs from cancer protein-protein interaction networks. BMC Syst. Biol., 2012 6 (3), S2.
    • (2012) BMC Syst. Biol. , vol.6 , Issue.3
    • Shen, R.1    Goonesekere, N.C.2    Guda, C.3
  • 79
    • 60549103853 scopus 로고    scopus 로고
    • Review Complex brain networks: Graph theoretical analysis of structural and functional systems
    • Bullmore, E.; Sporns, O. Review Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci., 2009 10 (3), 186-198.
    • (2009) Nat. Rev. Neurosci. , vol.10 , Issue.3 , pp. 186-198
    • Bullmore, E.1    Sporns, O.2
  • 83
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabási, A.L.; Albert, R. Emergence of scaling in random networks. Science, 1999 286, 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabási, A.L.1    Albert, R.2
  • 84
    • 33845357608 scopus 로고    scopus 로고
    • An algorithm for modularity analysis of directed and weighted biological networks based on edgebetweenness centrality
    • Yoon, J.; Blumer, A.; Lee, K. An algorithm for modularity analysis of directed and weighted biological networks based on edgebetweenness centrality. Bioinformatics, 2006 22, 3106-3108.
    • (2006) Bioinformatics , vol.22 , pp. 3106-3108
    • Yoon, J.1    Blumer, A.2    Lee, K.3
  • 85
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of Scaling in Random Networks
    • Barabási, A.-L.; Albert, R. Emergence of Scaling in Random Networks. Science, 1999 286, 509.
    • (1999) Science , vol.286 , pp. 509
    • Barabási, A.-L.1    Albert, R.2
  • 88
    • 84877730113 scopus 로고    scopus 로고
    • Dynamic modular architecture of protein-protein interaction networks beyond the dichotomy of 'date' and 'party' hubs
    • Chang, X.; Xu T.; Li, Y.; Wang K. Dynamic modular architecture of protein-protein interaction networks beyond the dichotomy of 'date' and 'party' hubs. Sci. Rep., 2013 3, 1691.
    • (2013) Sci. Rep. , vol.3 , pp. 1691
    • Chang, X.1    Xu, T.2    Li, Y.3    Wang, K.4
  • 89
    • 34447512704 scopus 로고    scopus 로고
    • Understanding network concepts in modules
    • Dong, J.; Horvath, S. Understanding network concepts in modules. BMC Syst. Biol., 2007 1, 24.
    • (2007) BMC Syst. Biol. , vol.1 , pp. 24
    • Dong, J.1    Horvath, S.2
  • 90
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabási, A.L.; Oltvai, Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet., 2004 5, 101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabási, A.L.1    Oltvai, Z.N.2
  • 91
    • 4243180814 scopus 로고    scopus 로고
    • Introduction to Social Network Methods
    • (University of California)
    • Hanneman, R.A.; Riddle, M. Introduction to Social Network Methods. (University of California), 2005.
    • (2005)
    • Hanneman, R.A.1    Riddle, M.2
  • 92
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts, D.J.; Strogatz, S.H. Collective dynamics of 'small-world' networks. Nature, 1998 393, 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 93
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • Newman, M.E. The structure and function of complex networks. SIAM Rev., 2003 45 (2), 167-256.
    • (2003) SIAM Rev. , vol.45 , Issue.2 , pp. 167-256
    • Newman, M.E.1
  • 94
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla, G.; Derényi, I.; Farkas, I.; Vicsek, T. Uncovering the overlapping community structure of complex networks in nature and society. Nature, 2005 435 (7043), 814-818.
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-818
    • Palla, G.1    Derényi, I.2    Farkas, I.3    Vicsek, T.4
  • 95
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov, S.; Sneppen, K. Specificity and stability in topology of protein networks. Science, 2002 296, 910-913.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 96
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H.; Mason, S.P.; Barabási, A.L.; Oltvai, Z.N. Lethality and centrality in protein networks. Nature, 2001 411 (6833), 41-42.
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabási, A.L.3    Oltvai, Z.N.4
  • 97
    • 50949092459 scopus 로고    scopus 로고
    • Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality
    • Zotenko, E.; Mestre, J.; O'Leary, D.P.; Przytycka, T.M. Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality. PLoS Comput. Biol., 2008 4 (8), e1000140.
    • (2008) PLoS Comput. Biol. , vol.4 , Issue.8
    • Zotenko, E.1    Mestre, J.2    O'Leary, D.P.3    Przytycka, T.M.4
  • 98
    • 84872045007 scopus 로고    scopus 로고
    • Chapter 4: Protein Interactions and Disease
    • Gonzalez, M.W.; Kann, M.G. Chapter 4: Protein Interactions and Disease. PLoS Comput. Biol., 2012 8 (12), e1002819.
    • (2012) PLoS Comput. Biol. , vol.8 , Issue.12
    • Gonzalez, M.W.1    Kann, M.G.2
  • 99
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.L.; Oltvai, Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet., 2004 5, 101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 100
    • 33646156606 scopus 로고    scopus 로고
    • Review of uses of network and graph theory concepts within proteomics
    • Grindrod, P.; Kibble, M. Review of uses of network and graph theory concepts within proteomics. Expert Rev. Proteomics, 2004 1, 229-238.
    • (2004) Expert Rev. Proteomics , vol.1 , pp. 229-238
    • Grindrod, P.1    Kibble, M.2
  • 102
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker, T.; Ozier, O.; Schwikowski, B.; Siegel, A.F. Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 2002 18 (1), S233-S240.
    • (2002) Bioinformatics , vol.18 , Issue.1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 103
    • 84863418134 scopus 로고    scopus 로고
    • Integrating the Alzheimer's disease proteome and transcriptome: A comprehensive network model of a complex disease
    • Hallock, P.; Thomas, M.A. Integrating the Alzheimer's disease proteome and transcriptome: a comprehensive network model of a complex disease. OMICS, 2012 16, 37-49.
    • (2012) OMICS , vol.16 , pp. 37-49
    • Hallock, P.1    Thomas, M.A.2
  • 105
    • 4644231870 scopus 로고    scopus 로고
    • A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease
    • Goehler, H.; Lalowski, M.; Stelzl, U.; Waelter, S.; Stroedicke M, et al. A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. Mol. Cell, 2004 15, 853-865.
    • (2004) Mol. Cell , vol.15 , pp. 853-865
    • Goehler, H.1    Lalowski, M.2    Stelzl, U.3    Waelter, S.4    Stroedicke, M.5
  • 107
    • 16844370705 scopus 로고    scopus 로고
    • Connecting the dots in Huntington's disease with protein interaction networks
    • Giorgini, F.; Muchowski, P.J. Connecting the dots in Huntington's disease with protein interaction networks. Genome Biol., 2005 6, 210.
    • (2005) Genome Biol. , vol.6 , pp. 210
    • Giorgini, F.1    Muchowski, P.J.2
  • 108
    • 0029074707 scopus 로고
    • Von Hippel-Lindau (VHL) disease with pheochromocytoma in the Black Forest region of Germany: Evidence for a founder effect
    • Brauch, H.; Kishida, T.; Glavac, D.; Chen, F.; Pausch, F.; et al. Von Hippel-Lindau (VHL) disease with pheochromocytoma in the Black Forest region of Germany: evidence for a founder effect. Hum. Genet., 1995 95, 551-556.
    • (1995) Hum. Genet. , vol.95 , pp. 551-556
    • Brauch, H.1    Kishida, T.2    Glavac, D.3    Chen, F.4    Pausch, F.5
  • 109
    • 0033776536 scopus 로고    scopus 로고
    • Ubiquitination of hypoxiainducible factor requires direct binding to the beta-domain of the von Hippel-Lindau protein
    • Ohh, M.; Park, C.W.;[Ivan, M.; Hoffman, M.A.; Kim, T.Y.; et al. Ubiquitination of hypoxiainducible factor requires direct binding to the beta-domain of the von Hippel-Lindau protein. Nat. Cell Biol., 2000 2, 423-427.
    • (2000) Nat. Cell Biol. , vol.2 , pp. 423-427
    • Ohh, M.1    Park, C.W.2    Ivan, M.3    Hoffman, M.A.4    Kim, T.Y.5
  • 110
    • 59849125136 scopus 로고    scopus 로고
    • Dynamic modularity in protein interaction networks predicts breast cancer outcome
    • Taylor, I.W.; Linding, R.; Warde-Farley, D.; Liu, Y.; Pesquita, C.; et al. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat. Biotechnol., 2009 27, 199-204.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 199-204
    • Taylor, I.W.1    Linding, R.2    Warde-Farley, D.3    Liu, Y.4    Pesquita, C.5
  • 111
    • 81255128913 scopus 로고    scopus 로고
    • Computational prediction of host-parasite protein interactions between P. falciparum and H. sapiens
    • Wuchty, S. Computational prediction of host-parasite protein interactions between P. falciparum and H. sapiens. PLoS ONE, 2011, 6(11), e26960.
    • (2011) PLoS ONE , vol.6 , Issue.11
    • Wuchty, S.1
  • 112
    • 77951618528 scopus 로고    scopus 로고
    • Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens
    • Doolittle, J.M.; Gomez, S.M. Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens. Virol. J., 2010 7 (1), 82.
    • (2010) Virol. J. , vol.7 , Issue.1 , pp. 82
    • Doolittle, J.M.1    Gomez, S.M.2
  • 113
    • 79952459772 scopus 로고    scopus 로고
    • Mapping protein interactions between Dengue virus and its human and insect hosts
    • Doolittle, J.M.; Gomez, S.M. Mapping protein interactions between Dengue virus and its human and insect hosts. PLoS Negl. Trop. Dis., 2011 5 (2), e954.
    • (2011) PLoS Negl. Trop. Dis. , vol.5 , Issue.2
    • Doolittle, J.M.1    Gomez, S.M.2
  • 114
    • 53249093973 scopus 로고    scopus 로고
    • A data integration approach to predict ostpathogen protein-protein interactions: Application to recognize protein interactions between human and a malarial parasite
    • Krishnadev, O.; Srinivasan, N. A data integration approach to predict ostpathogen protein-protein interactions: Application to recognize protein interactions between human and a malarial parasite. In Silico Biol., 2008 8 (3), 235-250.
    • (2008) In Silico Biol. , vol.8 , Issue.3 , pp. 235-250
    • Krishnadev, O.1    Srinivasan, N.2
  • 115
    • 79956299502 scopus 로고    scopus 로고
    • Supervised learning and prediction of physical interactions between human and HIV proteins
    • Dyer, M.D.; Murali, T.M.; Sobral, B.W. Supervised learning and prediction of physical interactions between human and HIV proteins. Infect. Genet. Evol., 2011 11 (5), 917-923.
    • (2011) Infect. Genet. Evol. , vol.11 , Issue.5 , pp. 917-923
    • Dyer, M.D.1    Murali, T.M.2    Sobral, B.W.3
  • 116
    • 79953269226 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions between human host and a pathogen and its application to three pathogenic bacteria
    • Krishnadev, O.; Srinivasan, N. Prediction of protein-protein interactions between human host and a pathogen and its application to three pathogenic bacteria. Int. J. Biol. Macromol., 2011 48, 613-619.
    • (2011) Int. J. Biol. Macromol. , vol.48 , pp. 613-619
    • Krishnadev, O.1    Srinivasan, N.2
  • 117
    • 61949241412 scopus 로고    scopus 로고
    • Prediction of interactions between HIV-1 and human proteins by information integration
    • Tastan, O.; Qi, Y.; Carbonell, J.G.; Klein-Seetharaman, J. Prediction of interactions between HIV-1 and human proteins by information integration. Pac. Symp. Biocomput., 2009 14, 516-527.
    • (2009) Pac. Symp. Biocomput. , vol.14 , pp. 516-527
    • Tastan, O.1    Qi, Y.2    Carbonell, J.G.3    Klein-Seetharaman, J.4
  • 118
    • 77956497661 scopus 로고    scopus 로고
    • Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins
    • Qi, Y.; Tastan, O.; Carbonell, J. G.; Klein-Seetharaman, J.; Weston, J. Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinformatics, 2010 26 (18), i645-i652.
    • (2010) Bioinformatics , vol.26 , Issue.18
    • Qi, Y.1    Tastan, O.2    Carbonell, J.G.3    Klein-Seetharaman, J.4    Weston, J.5
  • 121
    • 27744568481 scopus 로고    scopus 로고
    • The Plasmodium protein network diverges from those of other eukaryotes
    • Suthram, S.; Sittler, T.; Ideker, T. The Plasmodium protein network diverges from those of other eukaryotes. Nature, 2005 438, 108-112.
    • (2005) Nature , vol.438 , pp. 108-112
    • Suthram, S.1    Sittler, T.2    Ideker, T.3
  • 125
    • 37249032102 scopus 로고    scopus 로고
    • Dynamic personalities of proteins
    • Henzler-Wildman, K.; Kern, D. Dynamic personalities of proteins. Nature, 2007 450 (7172), 964-972.
    • (2007) Nature , vol.450 , Issue.7172 , pp. 964-972
    • Henzler-Wildman, K.1    Kern, D.2
  • 127
    • 25844521524 scopus 로고    scopus 로고
    • Advances in kinetic protein crystallography
    • Bourgeois, D.; Royant, A. Advances in kinetic protein crystallography. Curr. Opin. Struct. Biol., 2005 15, 538-547.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 538-547
    • Bourgeois, D.1    Royant, A.2
  • 128
    • 33750320427 scopus 로고    scopus 로고
    • Hydrogen exchange and mass spectrometry: A historical perspective
    • Englander, S.W. Hydrogen exchange and mass spectrometry: a historical perspective. J. Am. Soc. Mass Spectrom., 2006 17, 1481-1489.
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1481-1489
    • Englander, S.W.1
  • 133
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • Krogan, N.J.; Cagney, G.; Yu, H.; Zhong, G.; Guo, X.; et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature, 2006 440, 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1    Cagney, G.2    Yu, H.3    Zhong, G.4    Guo, X.5
  • 134
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin, V.; Mirny, L.A. Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci. U.S.A., 2003 100, 12123-12128.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 135
    • 33644656793 scopus 로고    scopus 로고
    • Systematic identification of functional orthologs based on protein network comparison
    • Bandyopadhyay, S.; Sharan, R.; Ideker, T. Systematic identification of functional orthologs based on protein network comparison. Genome Res., 2006 16, 428-435.
    • (2006) Genome Res. , vol.16 , pp. 428-435
    • Bandyopadhyay, S.1    Sharan, R.2    Ideker, T.3
  • 136
    • 33645901213 scopus 로고    scopus 로고
    • Diffusion kernel-based logistic regression models for protein function prediction
    • Lee, H.; Tu, Z.; Deng, M.; Sun, F.; Chen, T. Diffusion kernel-based logistic regression models for protein function prediction. OMICS: A Journal of Integrative Biology, 2006 10, 40-55.
    • (2006) OMICS: A Journal of Integrative Biology , vol.10 , pp. 40-55
    • Lee, H.1    Tu, Z.2    Deng, M.3    Sun, F.4    Chen, T.5
  • 137
    • 33745942567 scopus 로고    scopus 로고
    • Extraction of phylogenetic network modules from the metabolic network
    • Yamada, T.; Kanehisa, M.; Goto, S. Extraction of phylogenetic network modules from the metabolic network. BMC Bioinformatics, 2006 7, 130.
    • (2006) BMC Bioinformatics , vol.7 , pp. 130
    • Yamada, T.1    Kanehisa, M.2    Goto, S.3
  • 138
    • 31344459575 scopus 로고    scopus 로고
    • Finding biologically relevant protein domain interactions: Conserved binding mode analysis
    • Shoemaker, B.A.; Panchenko, A.R.; Bryant, S.H. Finding biologically relevant protein domain interactions: conserved binding mode analysis. Protein Sci., 2006 15, 352-361.
    • (2006) Protein Sci. , vol.15 , pp. 352-361
    • Shoemaker, B.A.1    Panchenko, A.R.2    Bryant, S.H.3
  • 139
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • Sprinzak, E.; Margalit, H. Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol., 2001 311, 681-692.
    • (2001) J. Mol. Biol. , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 141
    • 67149143183 scopus 로고    scopus 로고
    • Inferring protein-protein interactions from multiple protein domain combinations
    • Kanaan, S.P.; Huang, C.; Wuchty, S.; Chen, D.Z.; Izaguirre, J.A. Inferring protein-protein interactions from multiple protein domain combinations. Methods Mol. Biol., 2009 541, 43-59.
    • (2009) Methods Mol. Biol. , vol.541 , pp. 43-59
    • Kanaan, S.P.1    Huang, C.2    Wuchty, S.3    Chen, D.Z.4    Izaguirre, J.A.5
  • 142
    • 42949163440 scopus 로고    scopus 로고
    • Interrogating domain-domain interactions with parsimony based approaches
    • Guimaraes, K.S.; Przytycka, T.M. Interrogating domain-domain interactions with parsimony based approaches. BMC Bioinformatics, 2008 9, 171.
    • (2008) BMC Bioinformatics , vol.9 , pp. 171
    • Guimaraes, K.S.1    Przytycka, T.M.2
  • 143
    • 33748798478 scopus 로고    scopus 로고
    • Graph-based methods for analysing networks in cell biology
    • Aittokallio, T.; Schwikowski, B. Graph-based methods for analysing networks in cell biology. Brief Bioinform., 2006 7 (3), 243-255.
    • (2006) Brief Bioinform. , vol.7 , Issue.3 , pp. 243-255
    • Aittokallio, T.1    Schwikowski, B.2
  • 144
    • 84874289423 scopus 로고    scopus 로고
    • Graphlet-based measures are suitable for biological network comparison
    • Hayes, W.; Sun, K.; Przulj, N. Graphlet-based measures are suitable for biological network comparison. Bioinformatics, 2013 29 (4), 483-491.
    • (2013) Bioinformatics , vol.29 , Issue.4 , pp. 483-491
    • Hayes, W.1    Sun, K.2    Przulj, N.3
  • 145
    • 33846672214 scopus 로고    scopus 로고
    • Biological network comparison using graphlet degree distribution
    • Przulj, N. Biological network comparison using graphlet degree distribution. Bioinformatics, 2007 23, e177-e183.
    • (2007) Bioinformatics , vol.23
    • Przulj, N.1
  • 146
    • 12344273375 scopus 로고    scopus 로고
    • Modeling interactome: Scalefree or geometric?
    • Przulj, N.; Corneil, D.G.; Jurisica, I. Modeling interactome: scalefree or geometric? Bioinformatics, 2004, 20, 3508-3515.
    • (2004) Bioinformatics , vol.20 , pp. 3508-3515
    • Przulj, N.1    Corneil, D.G.2    Jurisica, I.3
  • 152
    • 77949508610 scopus 로고    scopus 로고
    • Expression-Based Network Biology Identifies Alteration in Key Regulatory Pathways of Type 2 Diabetes and Associated Risk/Complications
    • Sengupta, U.; Ukil, S.; Dimitrova, N.; Agrawal, S. Expression-Based Network Biology Identifies Alteration in Key Regulatory Pathways of Type 2 Diabetes and Associated Risk/Complications. PLoS ONE, 2009 4 (12), e8100.
    • (2009) PLoS ONE , vol.4 , Issue.12
    • Sengupta, U.1    Ukil, S.2    Dimitrova, N.3    Agrawal, S.4
  • 155
    • 0036186512 scopus 로고    scopus 로고
    • Protein interaction-targeted drug discovery: Evaluating critical issues
    • Golemis, E.A.; Tew, K.D.; Dadke, D. Protein interaction-targeted drug discovery: evaluating critical issues. Biotechniques, 2002 32 (3), 636-638.
    • (2002) Biotechniques , vol.32 , Issue.3 , pp. 636-638
    • Golemis, E.A.1    Tew, K.D.2    Dadke, D.3
  • 157
    • 80655149144 scopus 로고    scopus 로고
    • Wnt2 secreted by tumour fibroblasts promotes tumour progression in oesophageal cancer by activation of the Wnt/_-catenin signalling pathway
    • Fu, L.; Zhang, C.; Zhang, L.Y.; Dong, S.S.; Lu, L.H.; Chen, J.; Dai, Y.; Li, Y.; Kong, K.L.; Kwong, D.L.; Guan, X.Y. Wnt2 secreted by tumour fibroblasts promotes tumour progression in oesophageal cancer by activation of the Wnt/_-catenin signalling pathway. Gut, 2011 60, 1635-1643.
    • (2011) Gut , vol.60 , pp. 1635-1643
    • Fu, L.1    Zhang, C.2    Zhang, L.Y.3    Dong, S.S.4    Lu, L.H.5    Chen, J.6    Dai, Y.7    Li, Y.8    Kong, K.L.9    Kwong, D.L.10    Guan, X.Y.11
  • 158
    • 8444251784 scopus 로고    scopus 로고
    • The Wnt signaling pathway in development and disease
    • Logan, C.Y.; Nusse, R. The Wnt signaling pathway in development and disease. Annu. Rev. Cell Dev. Biol, 2004, 20, 781-810.
    • (2004) Annu. Rev. Cell Dev. Biol , vol.20 , pp. 781-810
    • Logan, C.Y.1    Nusse, R.2
  • 159
    • 0036830627 scopus 로고    scopus 로고
    • NMDA receptor pathways as drug targets
    • Kemp, J.A.; McKernan, R.M. NMDA receptor pathways as drug targets. Nat. Neurosci., 2002 5, 1039-1042.
    • (2002) Nat. Neurosci. , vol.5 , pp. 1039-1042
    • Kemp, J.A.1    McKernan, R.M.2
  • 160
    • 77956648156 scopus 로고    scopus 로고
    • N-methyl-d-aspartate (NMDA) receptor dysfunction or dysregulation: The final common pathway on the road to schizophrenia?
    • Kantrowitz, J.T.; Javitt, D.C. N-methyl-d-aspartate (NMDA) receptor dysfunction or dysregulation: the final common pathway on the road to schizophrenia?. Brain Res. Bull., 2010, 83(3-4), 108.
    • (2010) Brain Res. Bull. , vol.83 , Issue.3-4 , pp. 108
    • Kantrowitz, J.T.1    Javitt, D.C.2
  • 161
    • 73549117208 scopus 로고    scopus 로고
    • Physiological genomics identifies estrogenrelated receptor _ as a regulator of renal sodium and potassium homeostasis and the renin-angiotensin pathway
    • Tremblay, A.M.; Dufour, C.R.; Ghahremani, M.; Reudelhuber, T.L.; Giguère, V. Physiological genomics identifies estrogenrelated receptor _ as a regulator of renal sodium and potassium homeostasis and the renin-angiotensin pathway. Mol. Endocrinol, 2010 24 (1), 22-32.
    • (2010) Mol. Endocrinol , vol.24 , Issue.1 , pp. 22-32
    • Tremblay, A.M.1    Dufour, C.R.2    Ghahremani, M.3    Reudelhuber, T.L.4    Giguère, V.5
  • 162
    • 0030846832 scopus 로고    scopus 로고
    • Modulation of the renin-angiotensin pathway through enzyme inhibition and specific receptor blockade in pacing-induced heart failure I. Effects on left ventricular performance and neurohormonal systems
    • Spinale, F.G.; de Gasparo, M.; Whitebread, S., Hebbar, L.; Clair, M.J.; Melton, D.M.; Krombach, R.S.; Mukherjee, R.; Iannini, J.P.; O, S.J. Modulation of the renin-angiotensin pathway through enzyme inhibition and specific receptor blockade in pacing-induced heart failure I. Effects on left ventricular performance and neurohormonal systems. Circulation, 1997 96 (7), 2385-2396.
    • (1997) Circulation , vol.96 , Issue.7 , pp. 2385-2396
    • Spinale, F.G.1    de Gasparo, M.2    Whitebread, S.3    Hebbar, L.4    Clair, M.J.5    Melton, D.M.6    Krombach, R.S.7    Mukherjee, R.8    Iannini, J.P.O.S.J.9
  • 163
    • 68249093818 scopus 로고    scopus 로고
    • Targeting the phosphoinositide 3-kinase pathway in cancer
    • Liu, P.; Cheng, H.; Roberts, T.M.; Zhao, J.J. Targeting the phosphoinositide 3-kinase pathway in cancer. Nat. Rev. Drug Discov., 2009 8 (8), 627-644.
    • (2009) Nat. Rev. Drug Discov. , vol.8 , Issue.8 , pp. 627-644
    • Liu, P.1    Cheng, H.2    Roberts, T.M.3    Zhao, J.J.4
  • 164
    • 0034122869 scopus 로고    scopus 로고
    • Role of the Lowdensity Lipoprotein Receptor-Related Protein in {beta}-Amyloid Metabolism and Alzheimer Disease
    • Hyman, B.T.; Strickland, D.; Rebeck, G.W. Role of the Lowdensity Lipoprotein Receptor-Related Protein in {beta}-Amyloid Metabolism and Alzheimer Disease. Arch. Neurol., 2000 57 (5), 646.
    • (2000) Arch. Neurol. , vol.57 , Issue.5 , pp. 646
    • Hyman, B.T.1    Strickland, D.2    Rebeck, G.W.3
  • 165
    • 77149158139 scopus 로고    scopus 로고
    • Future therapeutic directions in reverse cholesterol transport
    • Khera, A.V.; Rader, D.J. Future therapeutic directions in reverse cholesterol transport. Curr. Atheroscler. Rep., 2010 12 (1), 73-81.
    • (2010) Curr. Atheroscler. Rep. , vol.12 , Issue.1 , pp. 73-81
    • Khera, A.V.1    Rader, D.J.2
  • 166
    • 0034983188 scopus 로고    scopus 로고
    • The sterol regulatory element-binding protein pathway: Control of lipid homeostasis through regulated intracellular transport
    • Sakai, J.; Rawson, R.B. The sterol regulatory element-binding protein pathway: control of lipid homeostasis through regulated intracellular transport. Curr. Opin. Lipidol., 2001 12 (3), 261-266.
    • (2001) Curr. Opin. Lipidol. , vol.12 , Issue.3 , pp. 261-266
    • Sakai, J.1    Rawson, R.B.2
  • 167
    • 77950541324 scopus 로고    scopus 로고
    • Orm1 and Orm2 are conserved endoplasmic reticulum membrane proteins regulating lipid homeostasis and protein quality control
    • Han, S.; Lone, M.A.; Schneiter, R.; Chang, A. Orm1 and Orm2 are conserved endoplasmic reticulum membrane proteins regulating lipid homeostasis and protein quality control. Proc. Nat. Acad. Sci., 2010, 107(13), 5851-5856.
    • (2010) Proc. Nat. Acad. Sci. , vol.107 , Issue.13 , pp. 5851-5856
    • Han, S.1    Lone, M.A.2    Schneiter, R.3    Chang, A.4
  • 168
    • 0036729478 scopus 로고    scopus 로고
    • Cyclic nucleotide research-still expanding after half a century
    • Beavo, J.A.; Brunton, L.L. Cyclic nucleotide research-still expanding after half a century. Nat. Rev. Mol. Cell Biol., 2002, 3(9), 710-718.
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , Issue.9 , pp. 710-718
    • Beavo, J.A.1    Brunton, L.L.2
  • 169
    • 0033801452 scopus 로고    scopus 로고
    • Cyclic nucleotide analogs as biochemical tools and prospective drugs
    • Schwede, F.; Maronde, E.; Genieser, H.G.; Jastorff, B. Cyclic nucleotide analogs as biochemical tools and prospective drugs. Pharmacol. Ther., 2000 87 (2), 199-226.
    • (2000) Pharmacol. Ther. , vol.87 , Issue.2 , pp. 199-226
    • Schwede, F.1    Maronde, E.2    Genieser, H.G.3    Jastorff, B.4
  • 170
    • 33646197298 scopus 로고    scopus 로고
    • Biochemical and molecular basis of insulin resistance
    • Chakraborty, C. Biochemical and molecular basis of insulin resistance. Curr. Protein Pept. Sci., 2006, 7(2), 113-121.
    • (2006) Curr. Protein Pept. Sci. , vol.7 , Issue.2 , pp. 113-121
    • Chakraborty, C.1
  • 171
    • 70349760843 scopus 로고    scopus 로고
    • The molecular basis of insulin-stimulated glucose uptake: Signalling, trafficking and potential drug targets
    • Leney, S.E.; Tavaré, J.M. The molecular basis of insulin-stimulated glucose uptake: signalling, trafficking and potential drug targets. J. Endocrinol., 2009, 203(1), 1-18.
    • (2009) J. Endocrinol. , vol.203 , Issue.1 , pp. 1-18
    • Leney, S.E.1    Tavaré, J.M.2
  • 172
    • 0031850628 scopus 로고    scopus 로고
    • Computation with the KEGG pathway database
    • Ogata, H.; Goto, S.; Fujibuchi, W.; Kanehisa, M. Computation with the KEGG pathway database. Biosystems, 1998, 47(1), 119-128.
    • (1998) Biosystems , vol.47 , Issue.1 , pp. 119-128
    • Ogata, H.1    Goto, S.2    Fujibuchi, W.3    Kanehisa, M.4
  • 176
    • 0036169106 scopus 로고    scopus 로고
    • PathFinder: Reconstruction and dynamic visualization of metabolic pathways
    • Goesmann, A.; Haubrock, M.; Meyer, F.; Kalinowski, J.; Giegerich, R. PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinformatics, 2002, 18(1), 124-129.
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 124-129
    • Goesmann, A.1    Haubrock, M.2    Meyer, F.3    Kalinowski, J.4    Giegerich, R.5
  • 177
    • 0037433056 scopus 로고    scopus 로고
    • GSCope: A clipped fisheye viewer effective for highly complicated biomolecular network graphs
    • Toyoda, T.; Mochizuki, Y.; Konagaya. A. GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. Bioinformatics, 2003, 19, 437-438.
    • (2003) Bioinformatics , vol.19 , pp. 437-438
    • Toyoda, T.1    Mochizuki, Y.2    Konagaya, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.