-
1
-
-
0035808005
-
Global burden of cardiovascular diseases: Part II: variations in cardiovascular disease by specific ethnic groups and geographic regions and prevention strategies
-
Yusuf, S., Reddy, S., Ounpuu, S., Anand, S., Global burden of cardiovascular diseases: Part II: variations in cardiovascular disease by specific ethnic groups and geographic regions and prevention strategies. Circulation 2001, 104, 2855-2864.
-
(2001)
Circulation
, vol.104
, pp. 2855-2864
-
-
Yusuf, S.1
Reddy, S.2
Ounpuu, S.3
Anand, S.4
-
2
-
-
84871441434
-
Cardioproteomics: advancing the discovery of signaling mechanisms involved in cardiovascular diseases
-
Cui, Z., Dewey, S., Gomes, A. V., Cardioproteomics: advancing the discovery of signaling mechanisms involved in cardiovascular diseases. Am. J. Cardiovasc. Dis. 2011, 1, 274-292.
-
(2011)
Am. J. Cardiovasc. Dis.
, vol.1
, pp. 274-292
-
-
Cui, Z.1
Dewey, S.2
Gomes, A.V.3
-
3
-
-
33750469002
-
Cardiovascular proteomics: tools to develop novel biomarkers and potential applications
-
Arab, S., Gramolini, A. O., Ping, P., Kislinger, T. et al., Cardiovascular proteomics: tools to develop novel biomarkers and potential applications. J. Am. Coll. Cardiol. 2006, 48, 1733-1741.
-
(2006)
J. Am. Coll. Cardiol.
, vol.48
, pp. 1733-1741
-
-
Arab, S.1
Gramolini, A.O.2
Ping, P.3
Kislinger, T.4
-
4
-
-
67650432879
-
The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry
-
Hoofnagle, A. N., Wener, M. H., The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry. J. Immunol. Met. 2009, 347, 3-11.
-
(2009)
J. Immunol. Met.
, vol.347
, pp. 3-11
-
-
Hoofnagle, A.N.1
Wener, M.H.2
-
5
-
-
84862909044
-
Next steps in cardiovascular disease genomic research-sequencing, epigenetics, and transcriptomics
-
Schnabel, R. B., Baccarelli, A., Lin, H., Ellinor, P. T., Benjamin, E. J., Next steps in cardiovascular disease genomic research-sequencing, epigenetics, and transcriptomics. Clin. Chem. 2012, 58, 113-126.
-
(2012)
Clin. Chem.
, vol.58
, pp. 113-126
-
-
Schnabel, R.B.1
Baccarelli, A.2
Lin, H.3
Ellinor, P.T.4
Benjamin, E.J.5
-
6
-
-
84859846797
-
Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells
-
Rugg-Gunn, P. J., Cox, B. J., Lanner, F., Sharma, P. et al., Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells. Dev. Cell. 2012, 22, 887-901.
-
(2012)
Dev. Cell.
, vol.22
, pp. 887-901
-
-
Rugg-Gunn, P.J.1
Cox, B.J.2
Lanner, F.3
Sharma, P.4
-
7
-
-
67650825203
-
Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology
-
Cox, B., Kotlyar, M., Evangelou, A. I., Ignatchenko, V. et al., Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology. Mol. Syst. Biol. 2009, 5, 279.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 279
-
-
Cox, B.1
Kotlyar, M.2
Evangelou, A.I.3
Ignatchenko, V.4
-
8
-
-
78650642557
-
Defining the transcriptome and proteome in three functionally different human cell lines
-
Lundberg, E., Fagerberg, L., Klevebring, D., Matic, I. et al., Defining the transcriptome and proteome in three functionally different human cell lines. Mol. Syst. Biol. 2010, 6, 450.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 450
-
-
Lundberg, E.1
Fagerberg, L.2
Klevebring, D.3
Matic, I.4
-
9
-
-
77954464041
-
Proteomics: a pragmatic perspective
-
Mallick, P., Kuster, B., Proteomics: a pragmatic perspective. Nat. Biotechnol. 2010, 28, 695-709.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 695-709
-
-
Mallick, P.1
Kuster, B.2
-
10
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M., Olsen, J. V., Cox, J., Nielsen, M. L. et al., Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455, 1251-1254.
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
de Godoy, L.M.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
-
11
-
-
84879354970
-
PPAR alpha: a novel radiation target in locally exposed Mus musculus heart revealed by quantitative proteomics
-
Azimzadeh, O., Sievert, W., Sarioglu, H., Yentrapalli, R. et al., PPAR alpha: a novel radiation target in locally exposed Mus musculus heart revealed by quantitative proteomics. J. Proteome Res. 2013, 12, 2700-2714.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2700-2714
-
-
Azimzadeh, O.1
Sievert, W.2
Sarioglu, H.3
Yentrapalli, R.4
-
12
-
-
0037015602
-
A proteomic view of the Plasmodium falciparum life cycle
-
Florens, L., Washburn, M. P., Raine, J. D., Anthony, R. M. et al., A proteomic view of the Plasmodium falciparum life cycle. Nature 2002, 419, 520-526.
-
(2002)
Nature
, vol.419
, pp. 520-526
-
-
Florens, L.1
Washburn, M.P.2
Raine, J.D.3
Anthony, R.M.4
-
13
-
-
77957220211
-
Two-dimensional gel electrophoresis in proteomics: past, present and future
-
Rabilloud, T., Chevallet, M., Luche, S., Lelong, C., Two-dimensional gel electrophoresis in proteomics: past, present and future. J. Proteomics 2010, 73, 2064-2077.
-
(2010)
J. Proteomics
, vol.73
, pp. 2064-2077
-
-
Rabilloud, T.1
Chevallet, M.2
Luche, S.3
Lelong, C.4
-
14
-
-
79952064739
-
Overview: the maturing of proteomics in cardiovascular research
-
Van Eyk, J. E., Overview: the maturing of proteomics in cardiovascular research. Circ. Res. 2011, 108, 490-498.
-
(2011)
Circ. Res.
, vol.108
, pp. 490-498
-
-
Van Eyk, J.E.1
-
15
-
-
84877791938
-
Recent advances in cardiovascular proteomics
-
Sharma, P., Cosme, J., Gramolini, A. O., Recent advances in cardiovascular proteomics. J. Proteomics 2013, 81, 3-14.
-
(2013)
J. Proteomics
, vol.81
, pp. 3-14
-
-
Sharma, P.1
Cosme, J.2
Gramolini, A.O.3
-
16
-
-
37849001163
-
Persistent regional downregulation in mitochondrial enzymes and upregulation of stress proteins in swine with chronic hibernating myocardium
-
Page, B., Young, R., Iyer, V., Suzuki, G. et al., Persistent regional downregulation in mitochondrial enzymes and upregulation of stress proteins in swine with chronic hibernating myocardium. Circ. Res. 2008, 102, 103-112.
-
(2008)
Circ. Res.
, vol.102
, pp. 103-112
-
-
Page, B.1
Young, R.2
Iyer, V.3
Suzuki, G.4
-
17
-
-
84880855558
-
Cardiovascular proteomics: challenges and opportunities for cardiologists of the future
-
Banfi, C., Brioschi, M., Tremoli, E., Cardiovascular proteomics: challenges and opportunities for cardiologists of the future. G. Ital. Cardiol. 2013, 14, 495-503.
-
(2013)
G. Ital. Cardiol.
, vol.14
, pp. 495-503
-
-
Banfi, C.1
Brioschi, M.2
Tremoli, E.3
-
18
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. et al., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 1999, 17, 994-999.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
-
19
-
-
42349105213
-
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags
-
Dayon, L., Hainard, A., Licker, V., Turck, N. et al., Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags. Anal. Chem. 2008, 80, 2921-2931.
-
(2008)
Anal. Chem.
, vol.80
, pp. 2921-2931
-
-
Dayon, L.1
Hainard, A.2
Licker, V.3
Turck, N.4
-
20
-
-
84873344841
-
Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method
-
Rauniyar, N., Gao, B., McClatchy, D. B., Yates, J. R., 3rd, Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method. J. Proteome Res. 2013, 12, 1031-1039.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 1031-1039
-
-
Rauniyar, N.1
Gao, B.2
McClatchy, D.B.3
Yates III, J.R.4
-
21
-
-
84875716859
-
Neutron-encoded mass signatures for multiplexed proteome quantification
-
Hebert, A. S., Merrill, A. E., Bailey, D. J., Still, A. J. et al., Neutron-encoded mass signatures for multiplexed proteome quantification. Nat. Methods 2013, 10, 332-334.
-
(2013)
Nat. Methods
, vol.10
, pp. 332-334
-
-
Hebert, A.S.1
Merrill, A.E.2
Bailey, D.J.3
Still, A.J.4
-
22
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
23
-
-
84883193905
-
Stable isotope labeling methods in protein profiling
-
Lengqvist, J., Sandberg, A., Stable isotope labeling methods in protein profiling. Methods Mol. Biol. 2013, 1023, 21-51.
-
(2013)
Methods Mol. Biol.
, vol.1023
, pp. 21-51
-
-
Lengqvist, J.1
Sandberg, A.2
-
24
-
-
84878722381
-
Stable isotope labeling in zebrafish allows in vivo monitoring of cardiac morphogenesis
-
Konzer, A., Ruhs, A., Braun, H., Jungblut, B. et al., Stable isotope labeling in zebrafish allows in vivo monitoring of cardiac morphogenesis. Mol. Cell. Proteomics 2013, 12, 1502-1512.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 1502-1512
-
-
Konzer, A.1
Ruhs, A.2
Braun, H.3
Jungblut, B.4
-
25
-
-
84886906404
-
Global protein quantification of mouse heart tissue based on the SILAC mouse
-
Konzer, A., Ruhs, A., Braun, T., Kruger, M., Global protein quantification of mouse heart tissue based on the SILAC mouse. Methods Mol. Biol. 2013, 1005, 39-52.
-
(2013)
Methods Mol. Biol.
, vol.1005
, pp. 39-52
-
-
Konzer, A.1
Ruhs, A.2
Braun, T.3
Kruger, M.4
-
26
-
-
20144388265
-
Quantitative proteomic analysis by accurate mass retention time pairs
-
Silva, J. C., Denny, R., Dorschel, C. A., Gorenstein, M. et al., Quantitative proteomic analysis by accurate mass retention time pairs. Anal. Chem. 2005, 77, 2187-2200.
-
(2005)
Anal. Chem.
, vol.77
, pp. 2187-2200
-
-
Silva, J.C.1
Denny, R.2
Dorschel, C.A.3
Gorenstein, M.4
-
27
-
-
84864809026
-
Label-free quantification and shotgun analysis of complex proteomes by one-dimensional SDS-PAGE/NanoLC-MS: evaluation for the large scale analysis of inflammatory human endothelial cells
-
Gautier, V., Mouton-Barbosa, E., Bouyssie, D., Delcourt, N. et al., Label-free quantification and shotgun analysis of complex proteomes by one-dimensional SDS-PAGE/NanoLC-MS: evaluation for the large scale analysis of inflammatory human endothelial cells. Mol. Cell. Proteomics 2012, 11, 527-539.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 527-539
-
-
Gautier, V.1
Mouton-Barbosa, E.2
Bouyssie, D.3
Delcourt, N.4
-
28
-
-
67049119810
-
A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome
-
Duan, X., Young, R., Straubinger, R. M., Page, B. et al., A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome. J. Proteome Res. 2009, 8, 2838-2850.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2838-2850
-
-
Duan, X.1
Young, R.2
Straubinger, R.M.3
Page, B.4
-
29
-
-
23044504789
-
Guidelines for the routine application of the peptide hits technique
-
Gao, J., Friedrichs, M. S., Dongre, A. R., Opiteck, G. J., Guidelines for the routine application of the peptide hits technique. J Am. Soc. Mass Spectrom. 2005, 16, 1231-1238.
-
(2005)
J Am. Soc. Mass Spectrom.
, vol.16
, pp. 1231-1238
-
-
Gao, J.1
Friedrichs, M.S.2
Dongre, A.R.3
Opiteck, G.J.4
-
30
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H., Sadygov, R. G., Yates, J. R., 3rd, A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
31
-
-
74049132731
-
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
-
Griffin, N. M., Yu, J., Long, F., Oh, P. et al., Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis. Nat. Biotechnol. 2010, 28, 83-89.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 83-89
-
-
Griffin, N.M.1
Yu, J.2
Long, F.3
Oh, P.4
-
32
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M., Meyer-Arendt, K., Aveline-Wolf, L., Pierce, K. G. et al., Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell. Proteomics 2005, 4, 1487-1502.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
-
33
-
-
41149127192
-
A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen
-
Asara, J. M., Christofk, H. R., Freimark, L. M., Cantley, L. C., A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen. Proteomics 2008, 8, 994-999.
-
(2008)
Proteomics
, vol.8
, pp. 994-999
-
-
Asara, J.M.1
Christofk, H.R.2
Freimark, L.M.3
Cantley, L.C.4
-
34
-
-
84890574613
-
Ion current-based proteomic profiling of the retina in a rat model of Smith-Lemli-Opitz Syndrome
-
Tu, C., Li, J., Jiang, X., Sheflin, L. et al., Ion current-based proteomic profiling of the retina in a rat model of Smith-Lemli-Opitz Syndrome. Mol. Cell. Proteomics 2013, 12, 3583-3598.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3583-3598
-
-
Tu, C.1
Li, J.2
Jiang, X.3
Sheflin, L.4
-
35
-
-
67651173106
-
Proteomics by mass spectrometry: approaches, advances, and applications
-
Yates, J. R., Ruse, C. I., Nakorchevsky, A., Proteomics by mass spectrometry: approaches, advances, and applications. Annu. Rev. Biomed. Eng. 2009, 11, 49-79.
-
(2009)
Annu. Rev. Biomed. Eng.
, vol.11
, pp. 49-79
-
-
Yates, J.R.1
Ruse, C.I.2
Nakorchevsky, A.3
-
36
-
-
84873987395
-
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments
-
Matzke, M. M., Brown, J. N., Gritsenko, M. A., Metz, T. O. et al., A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments. Proteomics 2013, 13, 493-503.
-
(2013)
Proteomics
, vol.13
, pp. 493-503
-
-
Matzke, M.M.1
Brown, J.N.2
Gritsenko, M.A.3
Metz, T.O.4
-
37
-
-
84898719933
-
Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data
-
Tu, C., Li, J., Sheng, Q., Zhang, M., Qu, J., Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data. J. Proteome Res. 2014, 13, 2069-2079.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 2069-2079
-
-
Tu, C.1
Li, J.2
Sheng, Q.3
Zhang, M.4
Qu, J.5
-
38
-
-
80053895751
-
A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS
-
Lai, X., Wang, L., Tang, H., Witzmann, F. A., A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS. J. Proteome Res. 2011, 10, 4799-4812.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4799-4812
-
-
Lai, X.1
Wang, L.2
Tang, H.3
Witzmann, F.A.4
-
39
-
-
84859256741
-
To label or not to label: applications of quantitative proteomics in neuroscience research
-
Filiou, M. D., Martins-de-Souza, D., Guest, P. C., Bahn, S., Turck, C. W., To label or not to label: applications of quantitative proteomics in neuroscience research. Proteomics 2012, 12, 736-747.
-
(2012)
Proteomics
, vol.12
, pp. 736-747
-
-
Filiou, M.D.1
Martins-de-Souza, D.2
Guest, P.C.3
Bahn, S.4
Turck, C.W.5
-
40
-
-
55349095003
-
Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory?
-
Carr, S. A., Anderson, L., Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory? Clin. Chem. 2008, 54, 1749-1752.
-
(2008)
Clin. Chem.
, vol.54
, pp. 1749-1752
-
-
Carr, S.A.1
Anderson, L.2
-
41
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
Mueller, L. N., Brusniak, M. Y., Mani, D. R., Aebersold, R., An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 2008, 7, 51-61.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.Y.2
Mani, D.R.3
Aebersold, R.4
-
42
-
-
74049115774
-
Mass spectrometry-based label-free quantitative proteomics
-
Zhu, W., Smith, J. W., Huang, C. M., Mass spectrometry-based label-free quantitative proteomics. J. Biomed. Biotechnol. 2010, 2010, 840518.
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 840518
-
-
Zhu, W.1
Smith, J.W.2
Huang, C.M.3
-
43
-
-
77955462279
-
Addressing accuracy and precision issues in iTRAQ quantitation
-
Karp, N. A., Huber, W., Sadowski, P. G., Charles, P. D. et al., Addressing accuracy and precision issues in iTRAQ quantitation. Mol. Cell. Proteomics 2010, 9, 1885-1897.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1885-1897
-
-
Karp, N.A.1
Huber, W.2
Sadowski, P.G.3
Charles, P.D.4
-
44
-
-
84862996761
-
Direct comparison of MS-based label-free and SILAC quantitative proteome profiling strategies in primary retinal Muller cells
-
Merl, J., Ueffing, M., Hauck, S. M., von Toerne, C., Direct comparison of MS-based label-free and SILAC quantitative proteome profiling strategies in primary retinal Muller cells. Proteomics 2012, 12, 1902-1911.
-
(2012)
Proteomics
, vol.12
, pp. 1902-1911
-
-
Merl, J.1
Ueffing, M.2
Hauck, S.M.3
von Toerne, C.4
-
45
-
-
84893852473
-
Large-scale, ion-current-based proteomics investigation of bronchoalveolar lavage fluid in chronic obstructive pulmonary disease patients
-
Tu, C., Jacob Mammen, M., Li, J., Shen, X. et al., Large-scale, ion-current-based proteomics investigation of bronchoalveolar lavage fluid in chronic obstructive pulmonary disease patients. J. Proteome Res. 2013, 13, 627-639.
-
(2013)
J. Proteome Res.
, vol.13
, pp. 627-639
-
-
Tu, C.1
Jacob Mammen, M.2
Li, J.3
Shen, X.4
-
46
-
-
84870596405
-
Current methods for global proteome identification
-
Vaudel, M., Sickmann, A., Martens, L., Current methods for global proteome identification. Expert Rev. Proteomics 2012, 9, 519-532.
-
(2012)
Expert Rev. Proteomics
, vol.9
, pp. 519-532
-
-
Vaudel, M.1
Sickmann, A.2
Martens, L.3
-
47
-
-
77957221582
-
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
-
Nesvizhskii, A. I., A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. J. Proteomics 2010, 73, 2092-2123.
-
(2010)
J. Proteomics
, vol.73
, pp. 2092-2123
-
-
Nesvizhskii, A.I.1
-
48
-
-
0037336905
-
Characterization of the human heart mitochondrial proteome
-
Taylor, S. W., Fahy, E., Zhang, B., Glenn, G. M. et al., Characterization of the human heart mitochondrial proteome. Nat. Biotechnol. 2003, 21, 281-286.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 281-286
-
-
Taylor, S.W.1
Fahy, E.2
Zhang, B.3
Glenn, G.M.4
-
49
-
-
25644445986
-
Improved sensitivity for quantification of proteins using triply charged cleavable isotope-coded affinity tag peptides
-
Qu, J., Straubinger, R. M., Improved sensitivity for quantification of proteins using triply charged cleavable isotope-coded affinity tag peptides. Rapid Commun. Mass Spectrom. 2005, 19, 2857-2864.
-
(2005)
Rapid Commun. Mass Spectrom.
, vol.19
, pp. 2857-2864
-
-
Qu, J.1
Straubinger, R.M.2
-
50
-
-
84870390546
-
An ion-current-based, comprehensive and reproducible proteomic strategy for comparative characterization of the cellular responses to novel anti-cancer agents in a prostate cell model
-
Tu, C., Li, J., Bu, Y., Hangauer, D., Qu, J., An ion-current-based, comprehensive and reproducible proteomic strategy for comparative characterization of the cellular responses to novel anti-cancer agents in a prostate cell model. J. Proteomics 2012, 77, 187-201.
-
(2012)
J. Proteomics
, vol.77
, pp. 187-201
-
-
Tu, C.1
Li, J.2
Bu, Y.3
Hangauer, D.4
Qu, J.5
-
51
-
-
79959241965
-
Combinatorial peptide ligand library treatment followed by a dual-enzyme, dual-activation approach on a nanoflow liquid chromatography/orbitrap/electron transfer dissociation system for comprehensive analysis of swine plasma proteome
-
Tu, C., Li, J., Young, R., Page, B. J. et al., Combinatorial peptide ligand library treatment followed by a dual-enzyme, dual-activation approach on a nanoflow liquid chromatography/orbitrap/electron transfer dissociation system for comprehensive analysis of swine plasma proteome. Anal. Chem. 2011, 83, 4802-4813.
-
(2011)
Anal. Chem.
, vol.83
, pp. 4802-4813
-
-
Tu, C.1
Li, J.2
Young, R.3
Page, B.J.4
-
52
-
-
0001644020
-
The human plasma proteome: history, character, and diagnostic prospects
-
Anderson, N. L., Anderson, N. G., The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1, 845-867.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
53
-
-
22044439419
-
A robust, streamlined, and reproducible method for proteomic analysis of serum by delipidation, albumin and IgG depletion, and two-dimensional gel electrophoresis
-
Fu, Q., Garnham, C. P., Elliott, S. T., Bovenkamp, D. E., Van Eyk, J. E., A robust, streamlined, and reproducible method for proteomic analysis of serum by delipidation, albumin and IgG depletion, and two-dimensional gel electrophoresis. Proteomics 2005, 5, 2656-2664.
-
(2005)
Proteomics
, vol.5
, pp. 2656-2664
-
-
Fu, Q.1
Garnham, C.P.2
Elliott, S.T.3
Bovenkamp, D.E.4
Van Eyk, J.E.5
-
54
-
-
33750682085
-
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry
-
Liu, T., Qian, W. J., Mottaz, H. M., Gritsenko, M. A. et al., Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry. Mol. Cell. Proteomics 2006, 5, 2167-2174.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 2167-2174
-
-
Liu, T.1
Qian, W.J.2
Mottaz, H.M.3
Gritsenko, M.A.4
-
55
-
-
65349176461
-
Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samples
-
Gundry, R. L., White, M. Y., Nogee, J., Tchernyshyov, I., Van Eyk, J. E., Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samples. Proteomics 2009, 9, 2021-2028.
-
(2009)
Proteomics
, vol.9
, pp. 2021-2028
-
-
Gundry, R.L.1
White, M.Y.2
Nogee, J.3
Tchernyshyov, I.4
Van Eyk, J.E.5
-
56
-
-
55049104915
-
Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification
-
Jaffe, J. D., Keshishian, H., Chang, B., Addona, T. A. et al., Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification. Mol. Cell. Proteomics 2008, 7, 1952-1962.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1952-1962
-
-
Jaffe, J.D.1
Keshishian, H.2
Chang, B.3
Addona, T.A.4
-
57
-
-
84855549488
-
System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top orbitrap
-
Nagaraj, N., Alexander Kulak, N., Cox, J., Neuhauser, N. et al., System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top orbitrap. Mol. Cell. Proteomics 2012, 11, M111.01372.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Nagaraj, N.1
Alexander Kulak, N.2
Cox, J.3
Neuhauser, N.4
-
58
-
-
77952837901
-
Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses
-
Qu, J., Lesse, A. J., Brauer, A. L., Cao, J. et al., Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses. BMC Microbiol. 2010, 10, 162.
-
(2010)
BMC Microbiol.
, vol.10
, pp. 162
-
-
Qu, J.1
Lesse, A.J.2
Brauer, A.L.3
Cao, J.4
-
59
-
-
33747030845
-
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
-
Rifai, N., Gillette, M. A., Carr, S. A., Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nat. Biotechnol. 2006, 24, 971-983.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
60
-
-
48249111340
-
Is the failing heart out of fuel or a worn engine running rich? A study of mitochondria in old spontaneously hypertensive rats
-
Jullig, M., Hickey, A. J., Chai, C. C., Skea, G. L. et al., Is the failing heart out of fuel or a worn engine running rich? A study of mitochondria in old spontaneously hypertensive rats. Proteomics 2008, 8, 2556-2572.
-
(2008)
Proteomics
, vol.8
, pp. 2556-2572
-
-
Jullig, M.1
Hickey, A.J.2
Chai, C.C.3
Skea, G.L.4
-
61
-
-
84878217785
-
Reversal of mitochondrial proteomic loss in Type 1 diabetic heart with overexpression of phospholipid hydroperoxide glutathione peroxidase
-
Baseler, W. A., Dabkowski, E. R., Jagannathan, R., Thapa, D. et al., Reversal of mitochondrial proteomic loss in Type 1 diabetic heart with overexpression of phospholipid hydroperoxide glutathione peroxidase. Am. J. Physiol. Regul. Integr. Comp. Physiol. 2013, 304, R553-R565.
-
(2013)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.304
-
-
Baseler, W.A.1
Dabkowski, E.R.2
Jagannathan, R.3
Thapa, D.4
-
62
-
-
79953184690
-
Multiple hypothesis testing in proteomics: a strategy for experimental work
-
Diz, A. P., Carvajal-Rodriguez, A., Skibinski, D. O., Multiple hypothesis testing in proteomics: a strategy for experimental work. Mol. Cell. Proteomics 2011, 10, M110 004374.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Diz, A.P.1
Carvajal-Rodriguez, A.2
Skibinski, D.O.3
-
63
-
-
38349129158
-
Toward a better understanding of preeclampsia: comparative proteomic analysis of preeclamptic placentas
-
Kim, Y. N., Kim, H. K., Warda, M., Kim, N. et al., Toward a better understanding of preeclampsia: comparative proteomic analysis of preeclamptic placentas. Proteomics Clin. Appl. 2007, 1, 1625-1636.
-
(2007)
Proteomics Clin. Appl.
, vol.1
, pp. 1625-1636
-
-
Kim, Y.N.1
Kim, H.K.2
Warda, M.3
Kim, N.4
-
64
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y. A. H., Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B 1995, 57, 289-300.
-
(1995)
J. R. Stat. Soc. Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.A.H.1
-
65
-
-
0036020892
-
A direct approach to false discovery rates
-
479-198
-
Storey, J. D., A direct approach to false discovery rates. J. R. Stat. Soc. Series B 2002, 64, 479-198.
-
(2002)
J. R. Stat. Soc. Series B
, vol.64
-
-
Storey, J.D.1
-
66
-
-
11144260096
-
Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: missing data, normalization, and statistics
-
Chang, J., Van Remmen, H., Ward, W. F., Regnier, F. E. et al., Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: missing data, normalization, and statistics. J. Proteome Res. 2004, 3, 1210-1218.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1210-1218
-
-
Chang, J.1
Van Remmen, H.2
Ward, W.F.3
Regnier, F.E.4
-
67
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., Mann, M., MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
68
-
-
70449377369
-
Empirical Bayes analysis of quantitative proteomics experiments
-
Margolin, A. A., Ong, S. E., Schenone, M., Gould, R. et al., Empirical Bayes analysis of quantitative proteomics experiments. PLoS One 2009, 4, e7454.
-
(2009)
PLoS One
, vol.4
-
-
Margolin, A.A.1
Ong, S.E.2
Schenone, M.3
Gould, R.4
-
69
-
-
46749116296
-
Altered proteome biology of cardiac mitochondria under stress conditions
-
Zhang, J., Liem, D. A., Mueller, M., Wang, Y. et al., Altered proteome biology of cardiac mitochondria under stress conditions. J. Proteome Res. 2008, 7, 2204-2214.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 2204-2214
-
-
Zhang, J.1
Liem, D.A.2
Mueller, M.3
Wang, Y.4
-
70
-
-
79551545013
-
Proteomic alterations of distinct mitochondrial subpopulations in the type 1 diabetic heart: contribution of protein import dysfunction
-
Baseler, W. A., Dabkowski, E. R., Williamson, C. L., Croston, T. L. et al., Proteomic alterations of distinct mitochondrial subpopulations in the type 1 diabetic heart: contribution of protein import dysfunction. Am. J. Physiol. Regul. Integr. Comp. Physiol. 2011, 300, R186-R200.
-
(2011)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.300
-
-
Baseler, W.A.1
Dabkowski, E.R.2
Williamson, C.L.3
Croston, T.L.4
-
71
-
-
77955435653
-
Mitochondrial dysfunction in the type 2 diabetic heart is associated with alterations in spatially distinct mitochondrial proteomes
-
Dabkowski, E. R., Baseler, W. A., Williamson, C. L., Powell, M. et al., Mitochondrial dysfunction in the type 2 diabetic heart is associated with alterations in spatially distinct mitochondrial proteomes. Am. J. Physiol. Heart. Circ. Physiol. 2010, 299, H529-H540.
-
(2010)
Am. J. Physiol. Heart. Circ. Physiol.
, vol.299
-
-
Dabkowski, E.R.1
Baseler, W.A.2
Williamson, C.L.3
Powell, M.4
-
72
-
-
72949110566
-
Proteomic remodelling of mitochondrial oxidative pathways in pressure overload-induced heart failure
-
Bugger, H., Schwarzer, M., Chen, D., Schrepper, A. et al., Proteomic remodelling of mitochondrial oxidative pathways in pressure overload-induced heart failure. Cardiovasc. Res. 2010, 85, 376-384.
-
(2010)
Cardiovasc. Res.
, vol.85
, pp. 376-384
-
-
Bugger, H.1
Schwarzer, M.2
Chen, D.3
Schrepper, A.4
-
73
-
-
77953121217
-
Sub-proteomic fractionation, iTRAQ, and OFFGEL-LC-MS/MS approaches to cardiac proteomics
-
Warren, C. M., Geenen, D. L., Helseth, D. L., Jr., Xu, H., Solaro, R. J., Sub-proteomic fractionation, iTRAQ, and OFFGEL-LC-MS/MS approaches to cardiac proteomics. J. Proteomics 2010, 73, 1551-1561.
-
(2010)
J. Proteomics
, vol.73
, pp. 1551-1561
-
-
Warren, C.M.1
Geenen, D.L.2
Helseth Jr, D.L.3
Xu, H.4
Solaro, R.J.5
-
74
-
-
77649109602
-
Proteomics analysis of the cardiac myofilament subproteome reveals dynamic alterations in phosphatase subunit distribution
-
Yin, X., Cuello, F., Mayr, U., Hao, Z. et al., Proteomics analysis of the cardiac myofilament subproteome reveals dynamic alterations in phosphatase subunit distribution. Mol. Cell. Proteomics 2010, 9, 497-509.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 497-509
-
-
Yin, X.1
Cuello, F.2
Mayr, U.3
Hao, Z.4
-
75
-
-
77949862634
-
Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes
-
Van Hoof, D., Dormeyer, W., Braam, S. R., Passier, R. et al., Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. J. Proteome Res. 2010, 9, 1610-1618.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1610-1618
-
-
Van Hoof, D.1
Dormeyer, W.2
Braam, S.R.3
Passier, R.4
-
76
-
-
77956502142
-
A novel, in-solution separation of endogenous cardiac sarcomeric proteins and identification of distinct charged variants of regulatory light chain
-
Scruggs, S. B., Reisdorph, R., Armstrong, M. L., Warren, C. M. et al., A novel, in-solution separation of endogenous cardiac sarcomeric proteins and identification of distinct charged variants of regulatory light chain. Mol. Cell. Proteomics 2010, 9, 1804-1818.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1804-1818
-
-
Scruggs, S.B.1
Reisdorph, R.2
Armstrong, M.L.3
Warren, C.M.4
-
77
-
-
84888264654
-
Proteomic remodeling of proteasome in right heart failure
-
Fessart, D., Martin-Negrier, M. L., Claverol, S., Thiolat, M. L. et al., Proteomic remodeling of proteasome in right heart failure. J. Mol. Cell Cardiol. 2013, 66C, 41-52.
-
(2013)
J. Mol. Cell Cardiol.
, vol.66 C
, pp. 41-52
-
-
Fessart, D.1
Martin-Negrier, M.L.2
Claverol, S.3
Thiolat, M.L.4
-
78
-
-
84863870532
-
Mitochondrial proteomics-a tool for the study of metabolic disorders
-
Gregersen, N., Hansen, J., Palmfeldt, J., Mitochondrial proteomics-a tool for the study of metabolic disorders. J. Inherit. Metab. Dis. 2012, 35, 715-726.
-
(2012)
J. Inherit. Metab. Dis.
, vol.35
, pp. 715-726
-
-
Gregersen, N.1
Hansen, J.2
Palmfeldt, J.3
-
79
-
-
0038637237
-
Van Eyk, J. E., Mitochondrial proteomics. Undercover in the lipid bilayer
-
McDonald, T. G., Van Eyk, J. E., Mitochondrial proteomics. Undercover in the lipid bilayer. Basic Res. Cardiol. 2003, 98, 219-227.
-
(2003)
Basic Res. Cardiol.
, vol.98
, pp. 219-227
-
-
McDonald, T.G.1
-
80
-
-
55149125606
-
The role of proteomics in clinical cardiovascular biomarker discovery
-
Edwards, A. V., White, M. Y., Cordwell, S. J., The role of proteomics in clinical cardiovascular biomarker discovery. Mol. Cell. Proteomics 2008, 7, 1824-1837.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1824-1837
-
-
Edwards, A.V.1
White, M.Y.2
Cordwell, S.J.3
-
81
-
-
38149124113
-
Characterization of proteomic changes in cardiac mitochondria in streptozotocin-diabetic rats using iTRAQ isobaric tags
-
Jullig, M., Hickey, A. J., Middleditch, M. J., Crossman, D. J. et al., Characterization of proteomic changes in cardiac mitochondria in streptozotocin-diabetic rats using iTRAQ isobaric tags. Proteomics Clin. Appl. 2007, 1, 565-576.
-
(2007)
Proteomics Clin. Appl.
, vol.1
, pp. 565-576
-
-
Jullig, M.1
Hickey, A.J.2
Middleditch, M.J.3
Crossman, D.J.4
-
82
-
-
79961241846
-
Development of a novel proteomic approach for mitochondrial proteomics from cardiac tissue from patients with atrial fibrillation
-
Goudarzi, M., Ross, M. M., Zhou, W., Van Meter, A. et al., Development of a novel proteomic approach for mitochondrial proteomics from cardiac tissue from patients with atrial fibrillation. J. Proteome Res. 2011, 10, 3484-3492.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3484-3492
-
-
Goudarzi, M.1
Ross, M.M.2
Zhou, W.3
Van Meter, A.4
-
83
-
-
84867722817
-
Quantitative proteomic analysis reveals novel mitochondrial targets of estrogen deficiency in the aged female rat heart
-
Lancaster, T. S., Jefferson, S. J., Hunter, J. C., Lopez, V. et al., Quantitative proteomic analysis reveals novel mitochondrial targets of estrogen deficiency in the aged female rat heart. Physiol. Genomics 2012, 44, 957-969.
-
(2012)
Physiol. Genomics
, vol.44
, pp. 957-969
-
-
Lancaster, T.S.1
Jefferson, S.J.2
Hunter, J.C.3
Lopez, V.4
-
84
-
-
84861791541
-
Acute inhibition of GSK causes mitochondrial remodeling
-
Nguyen, T., Wong, R., Wang, G., Gucek, M. et al., Acute inhibition of GSK causes mitochondrial remodeling. Am. J. Physiol. Heart. Circ. Physiol. 2012, 302, H2439-H2445.
-
(2012)
Am. J. Physiol. Heart. Circ. Physiol.
, vol.302
-
-
Nguyen, T.1
Wong, R.2
Wang, G.3
Gucek, M.4
-
85
-
-
84870713042
-
Metabolic labeling reveals proteome dynamics of mouse mitochondria
-
Kim, T. Y., Wang, D., Kim, A. K., Lau, E. et al., Metabolic labeling reveals proteome dynamics of mouse mitochondria. Mol. Cell. Proteomics 2012, 11, 1586-1594.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1586-1594
-
-
Kim, T.Y.1
Wang, D.2
Kim, A.K.3
Lau, E.4
-
86
-
-
0024319420
-
Cardiac interstitium in health and disease: the fibrillar collagen network
-
Weber, K. T., Cardiac interstitium in health and disease: the fibrillar collagen network. J. Am. Coll. Cardiol. 1989, 13, 1637-1652.
-
(1989)
J. Am. Coll. Cardiol.
, vol.13
, pp. 1637-1652
-
-
Weber, K.T.1
-
87
-
-
84883593490
-
Integrating the myocardial matrix into heart failure recognition and management
-
Spinale, F. G., Zile, M. R., Integrating the myocardial matrix into heart failure recognition and management. Circ. Res. 2013, 113, 725-738.
-
(2013)
Circ. Res.
, vol.113
, pp. 725-738
-
-
Spinale, F.G.1
Zile, M.R.2
-
88
-
-
84857116198
-
Fibrosis: is it a coactivator disease?
-
Ghosh, A. K., Vaughan, D. E., Fibrosis: is it a coactivator disease? Front Biosci (Elite Ed) 2012, 4, 1556-1570.
-
(2012)
Front Biosci (Elite Ed)
, vol.4
, pp. 1556-1570
-
-
Ghosh, A.K.1
Vaughan, D.E.2
-
89
-
-
77956496368
-
Proteomics characterization of extracellular space components in the human aorta
-
Didangelos, A., Yin, X., Mandal, K., Baumert, M. et al., Proteomics characterization of extracellular space components in the human aorta. Mol. Cell. Proteomics 2010, 9, 2048-2062.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2048-2062
-
-
Didangelos, A.1
Yin, X.2
Mandal, K.3
Baumert, M.4
-
90
-
-
80051661224
-
Extracellular matrix composition and remodeling in human abdominal aortic aneurysms: a proteomics approach
-
Didangelos, A., Yin, X., Mandal, K., Saje, A. et al., Extracellular matrix composition and remodeling in human abdominal aortic aneurysms: a proteomics approach. Mol. Cell. Proteomics 2011, 10, M111 008128.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Didangelos, A.1
Yin, X.2
Mandal, K.3
Saje, A.4
-
91
-
-
84857615660
-
Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury
-
Barallobre-Barreiro, J., Didangelos, A., Schoendube, F. A., Drozdov, I. et al., Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury. Circulation 2012, 125, 789-802.
-
(2012)
Circulation
, vol.125
, pp. 789-802
-
-
Barallobre-Barreiro, J.1
Didangelos, A.2
Schoendube, F.A.3
Drozdov, I.4
-
92
-
-
84872333448
-
Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells
-
Higuchi, S., Lin, Q., Wang, J., Lim, T. K. et al., Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells. J. Biosci. Bioeng. 2013, 115, 320-325.
-
(2013)
J. Biosci. Bioeng.
, vol.115
, pp. 320-325
-
-
Higuchi, S.1
Lin, Q.2
Wang, J.3
Lim, T.K.4
-
93
-
-
82955189746
-
Phosphoproteomic profiling of the myocyte
-
Edwards, A. V., Cordwell, S. J., White, M. Y., Phosphoproteomic profiling of the myocyte. Circ. Cardiovasc. Genet. 2011, 4, 575.
-
(2011)
Circ. Cardiovasc. Genet.
, vol.4
, pp. 575
-
-
Edwards, A.V.1
Cordwell, S.J.2
White, M.Y.3
-
94
-
-
84890697920
-
Post-translational modifications: a major focus for the future of proteomics
-
Hart, G. W., Ball, L. E., Post-translational modifications: a major focus for the future of proteomics. Mol. Cell. Proteomics 2013, 12, 3443.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3443
-
-
Hart, G.W.1
Ball, L.E.2
-
95
-
-
79952057976
-
Van Eyk, J. E., Divide and conquer: the application of organelle proteomics to heart failure
-
Agnetti, G., Husberg, C., Van Eyk, J. E., Divide and conquer: the application of organelle proteomics to heart failure. Circ. Res. 2011, 108, 512-526.
-
(2011)
Circ. Res.
, vol.108
, pp. 512-526
-
-
Agnetti, G.1
Husberg, C.2
-
96
-
-
1042268061
-
Lessons from old and new kinases
-
Van Eyk, J. E., Lessons from old and new kinases. Circ. Res. 2004, 94, 135-137.
-
(2004)
Circ. Res.
, vol.94
, pp. 135-137
-
-
Van Eyk, J.E.1
-
97
-
-
70349973075
-
Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation
-
Boja, E. S., Phillips, D., French, S. A., Harris, R. A., Balaban, R. S., Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation. J. Proteome Res. 2009, 8, 4665-4675.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4665-4675
-
-
Boja, E.S.1
Phillips, D.2
French, S.A.3
Harris, R.A.4
Balaban, R.S.5
-
98
-
-
84887049813
-
Quantitative phosphoproteomic study of pressure-overloaded mouse heart reveals dynamin-related protein 1 as a modulator of cardiac hypertrophy
-
Chang, Y. W., Chang, Y. T., Wang, Q., Lin, J. J. et al., Quantitative phosphoproteomic study of pressure-overloaded mouse heart reveals dynamin-related protein 1 as a modulator of cardiac hypertrophy. Mol. Cell. Proteomics 2013, 12, 3094-3107.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3094-3107
-
-
Chang, Y.W.1
Chang, Y.T.2
Wang, Q.3
Lin, J.J.4
-
99
-
-
84895530188
-
Phosphoproteomics study based on in vivo inhibition reveals sites of calmodulin-dependent protein kinase II regulation in the heart
-
Scholten, A., Preisinger, C., Corradini, E., Bourgonje, V. J. et al., Phosphoproteomics study based on in vivo inhibition reveals sites of calmodulin-dependent protein kinase II regulation in the heart. J. Am. Heart Assoc. 2013, 2, e000318.
-
(2013)
J. Am. Heart Assoc.
, vol.2
-
-
Scholten, A.1
Preisinger, C.2
Corradini, E.3
Bourgonje, V.J.4
-
100
-
-
84878953405
-
In vivo phosphoproteomics analysis reveals the cardiac targets of beta-adrenergic receptor signaling
-
Lundby, A., Andersen, M. N., Steffensen, A. B., Horn, H. et al., In vivo phosphoproteomics analysis reveals the cardiac targets of beta-adrenergic receptor signaling. Sci. Signal 2013, 6, rs11.
-
(2013)
Sci. Signal
, vol.6
-
-
Lundby, A.1
Andersen, M.N.2
Steffensen, A.B.3
Horn, H.4
-
101
-
-
84856717563
-
Identification and quantification of S-nitrosylation by cysteine reactive tandem mass tag switch assay
-
Murray, C. I., Uhrigshardt, H., O'Meally, R. N., Cole, R. N., Van Eyk, J. E., Identification and quantification of S-nitrosylation by cysteine reactive tandem mass tag switch assay. Mol. Cell. Proteomics 2012, 11, M111 013441.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Murray, C.I.1
Uhrigshardt, H.2
O'Meally, R.N.3
Cole, R.N.4
Van Eyk, J.E.5
-
102
-
-
80051655470
-
Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environment
-
Parker, B. L., Palmisano, G., Edwards, A. V., White, M. Y. et al., Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environment. Mol. Cell. Proteomics 2011, 10, M110 006833.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Parker, B.L.1
Palmisano, G.2
Edwards, A.V.3
White, M.Y.4
-
103
-
-
84865726581
-
Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns
-
Lundby, A., Lage, K., Weinert, B. T., Bekker-Jensen, D. B. et al., Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns. Cell Rep. 2012, 2, 419-431.
-
(2012)
Cell Rep.
, vol.2
, pp. 419-431
-
-
Lundby, A.1
Lage, K.2
Weinert, B.T.3
Bekker-Jensen, D.B.4
-
104
-
-
78649866399
-
Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by alpha-crystallin-B
-
Bousette, N., Chugh, S., Fong, V., Isserlin, R. et al., Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by alpha-crystallin-B. Proc. Natl. Acad. Sci. USA 2010, 107, 18481-18486.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18481-18486
-
-
Bousette, N.1
Chugh, S.2
Fong, V.3
Isserlin, R.4
-
105
-
-
84893479693
-
Time course label-free quantitative analysis of cardiac muscles of rats after myocardial infarction
-
Li, C., Qiu, Q., Wang, Y., Li, P. et al., Time course label-free quantitative analysis of cardiac muscles of rats after myocardial infarction. Mol. Biosyst. 2014, 10, 505-513.
-
(2014)
Mol. Biosyst.
, vol.10
, pp. 505-513
-
-
Li, C.1
Qiu, Q.2
Wang, Y.3
Li, P.4
-
106
-
-
79251555298
-
Cardiovascular proteomics: translational studies to develop novel biomarkers in heart failure and left ventricular remodeling
-
Dubois, E., Fertin, M., Burdese, J., Amouyel, P. et al., Cardiovascular proteomics: translational studies to develop novel biomarkers in heart failure and left ventricular remodeling. Proteomics Clin. Appl. 2011, 5, 57-66.
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 57-66
-
-
Dubois, E.1
Fertin, M.2
Burdese, J.3
Amouyel, P.4
-
107
-
-
75749109435
-
Integration of proteomic-based tools for improved biomarkers of myocardial injury
-
Gerszten, R. E., Carr, S. A., Sabatine, M., Integration of proteomic-based tools for improved biomarkers of myocardial injury. Clin. Chem. 2010, 56, 194-201.
-
(2010)
Clin. Chem.
, vol.56
, pp. 194-201
-
-
Gerszten, R.E.1
Carr, S.A.2
Sabatine, M.3
-
108
-
-
33646814039
-
Proteomics of the heart: unraveling disease
-
McGregor, E., Dunn, M. J., Proteomics of the heart: unraveling disease. Circ. Res. 2006, 98, 309-321.
-
(2006)
Circ. Res.
, vol.98
, pp. 309-321
-
-
McGregor, E.1
Dunn, M.J.2
-
109
-
-
84858282674
-
Myocardial perfusion and contraction in acute ischemia and chronic ischemic heart disease
-
Canty, J. M., Jr., Suzuki, G., Myocardial perfusion and contraction in acute ischemia and chronic ischemic heart disease. J. Mol. Cell. Cardiol. 2012, 52, 822-831.
-
(2012)
J. Mol. Cell. Cardiol.
, vol.52
, pp. 822-831
-
-
Canty Jr, J.M.1
Suzuki, G.2
-
110
-
-
84859220149
-
Secreted proteins as a fundamental source for biomarker discovery
-
Stastna, M., Van Eyk, J. E., Secreted proteins as a fundamental source for biomarker discovery. Proteomics 2012, 12, 722-735.
-
(2012)
Proteomics
, vol.12
, pp. 722-735
-
-
Stastna, M.1
Van Eyk, J.E.2
-
111
-
-
79955848704
-
Characterization of the human myocardial proteome in inflammatory dilated cardiomyopathy by label-free quantitative shotgun proteomics of heart biopsies
-
Hammer, E., Goritzka, M., Ameling, S., Darm, K. et al., Characterization of the human myocardial proteome in inflammatory dilated cardiomyopathy by label-free quantitative shotgun proteomics of heart biopsies. J. Proteome Res. 2011, 10, 2161-2171.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2161-2171
-
-
Hammer, E.1
Goritzka, M.2
Ameling, S.3
Darm, K.4
-
112
-
-
84899716335
-
Sorbin and SH3 domain-containing protein 2 is released from infarcted heart in the very early phase: proteomic analysis of cardiac tissues from patients
-
Kakimoto, Y., Ito, S., Abiru, H., Kotani, H. et al., Sorbin and SH3 domain-containing protein 2 is released from infarcted heart in the very early phase: proteomic analysis of cardiac tissues from patients. J. Am. Heart Assoc. 2013, 2, e000565.
-
(2013)
J. Am. Heart Assoc.
, vol.2
-
-
Kakimoto, Y.1
Ito, S.2
Abiru, H.3
Kotani, H.4
-
113
-
-
84881229184
-
Proteomic profiling of cardiomyopathic tissue from the aged mdx model of Duchenne muscular dystrophy reveals a drastic decrease in laminin, nidogen and annexin
-
Holland, A., Dowling, P., Zweyer, M., Swandulla, D. et al., Proteomic profiling of cardiomyopathic tissue from the aged mdx model of Duchenne muscular dystrophy reveals a drastic decrease in laminin, nidogen and annexin. Proteomics 2013, 13, 2312-2323.
-
(2013)
Proteomics
, vol.13
, pp. 2312-2323
-
-
Holland, A.1
Dowling, P.2
Zweyer, M.3
Swandulla, D.4
-
114
-
-
84881222874
-
Pilot study identifying myosin heavy chain 7, desmin, insulin-like growth factor 7, and annexin A2 as circulating biomarkers of human heart failure
-
Chugh, S., Ouzounian, M., Lu, Z., Mohamed, S. et al., Pilot study identifying myosin heavy chain 7, desmin, insulin-like growth factor 7, and annexin A2 as circulating biomarkers of human heart failure. Proteomics 2013, 13, 2324-2334.
-
(2013)
Proteomics
, vol.13
, pp. 2324-2334
-
-
Chugh, S.1
Ouzounian, M.2
Lu, Z.3
Mohamed, S.4
-
115
-
-
79959757195
-
Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics
-
Jing, L., Parker, C. E., Seo, D., Hines, M. W. et al., Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics. Proteomics 2011, 11, 2763-2776.
-
(2011)
Proteomics
, vol.11
, pp. 2763-2776
-
-
Jing, L.1
Parker, C.E.2
Seo, D.3
Hines, M.W.4
-
116
-
-
79955034735
-
Time course proteomic profiling of human myocardial infarction plasma samples: an approach to new biomarker discovery
-
Silbiger, V. N., Luchessi, A. D., Hirata, R. D., Neto, L. G. et al., Time course proteomic profiling of human myocardial infarction plasma samples: an approach to new biomarker discovery. Clin. Chim. Acta. 2011, 412, 1086-1093.
-
(2011)
Clin. Chim. Acta.
, vol.412
, pp. 1086-1093
-
-
Silbiger, V.N.1
Luchessi, A.D.2
Hirata, R.D.3
Neto, L.G.4
-
117
-
-
79951539877
-
Semi-targeted plasma proteomics discovery workflow utilizing two-stage protein depletion and off-line LC-MALDI MS/MS
-
Juhasz, P., Lynch, M., Sethuraman, M., Campbell, J. et al., Semi-targeted plasma proteomics discovery workflow utilizing two-stage protein depletion and off-line LC-MALDI MS/MS. J. Proteome Res. 2011, 10, 34-45.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 34-45
-
-
Juhasz, P.1
Lynch, M.2
Sethuraman, M.3
Campbell, J.4
-
118
-
-
84866406934
-
Unbiased plasma proteomics for novel diagnostic biomarkers in cardiovascular disease: identification of quiescin Q6 as a candidate biomarker of acutely decompensated heart failure
-
Mebazaa, A., Vanpoucke, G., Thomas, G., Verleysen, K. et al., Unbiased plasma proteomics for novel diagnostic biomarkers in cardiovascular disease: identification of quiescin Q6 as a candidate biomarker of acutely decompensated heart failure. Eur. Heart J. 2012, 33, 2317-2324.
-
(2012)
Eur. Heart J.
, vol.33
, pp. 2317-2324
-
-
Mebazaa, A.1
Vanpoucke, G.2
Thomas, G.3
Verleysen, K.4
-
119
-
-
77953666426
-
Toward metabolomic signatures of cardiovascular disease
-
Lewis, G. D., Gerszten, R. E., Toward metabolomic signatures of cardiovascular disease. Circ. Cardiovasc. Genet. 2010, 3, 119-121.
-
(2010)
Circ. Cardiovasc. Genet.
, vol.3
, pp. 119-121
-
-
Lewis, G.D.1
Gerszten, R.E.2
-
120
-
-
77955458799
-
Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling
-
Li, M., Gray, W., Zhang, H., Chung, C. H. et al., Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling. J. Proteome Res. 2010, 9, 4295-4305.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 4295-4305
-
-
Li, M.1
Gray, W.2
Zhang, H.3
Chung, C.H.4
-
121
-
-
33745700428
-
Utility of cleavable isotope-coded affinity-tagged reagents for quantification of low-copy proteins induced by methylprednisolone using liquid chromatography/tandem mass spectrometry
-
Qu, J., Jusko, W. J., Straubinger, R. M., Utility of cleavable isotope-coded affinity-tagged reagents for quantification of low-copy proteins induced by methylprednisolone using liquid chromatography/tandem mass spectrometry. Anal. Chem. 2006, 78, 4543-4552.
-
(2006)
Anal. Chem.
, vol.78
, pp. 4543-4552
-
-
Qu, J.1
Jusko, W.J.2
Straubinger, R.M.3
-
122
-
-
70350519351
-
Finding one's way in proteomics: a protein species nomenclature
-
Schluter, H., Apweiler, R., Holzhutter, H. G., Jungblut, P. R., Finding one's way in proteomics: a protein species nomenclature. Chem. Cent. J. 2009, 3, 11.
-
(2009)
Chem. Cent. J.
, vol.3
, pp. 11
-
-
Schluter, H.1
Apweiler, R.2
Holzhutter, H.G.3
Jungblut, P.R.4
-
123
-
-
33749615256
-
Chemistry. Mass spectrometry: bottom-up or top-down?
-
Chait, B. T., Chemistry. Mass spectrometry: bottom-up or top-down? Science 2006, 314, 65-66.
-
(2006)
Science
, vol.314
, pp. 65-66
-
-
Chait, B.T.1
-
124
-
-
80052438941
-
Top-down quantitative proteomics identified phosphorylation of cardiac troponin I as a candidate biomarker for chronic heart failure
-
Zhang, J., Guy, M. J., Norman, H. S., Chen, Y. C. et al., Top-down quantitative proteomics identified phosphorylation of cardiac troponin I as a candidate biomarker for chronic heart failure. J. Proteome Res. 2011, 10, 4054-4065.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4054-4065
-
-
Zhang, J.1
Guy, M.J.2
Norman, H.S.3
Chen, Y.C.4
-
125
-
-
84862917688
-
Augmented phosphorylation of cardiac troponin I in hypertensive heart failure
-
Dong, X., Sumandea, C. A., Chen, Y. C., Garcia-Cazarin, M. L. et al., Augmented phosphorylation of cardiac troponin I in hypertensive heart failure. J. Biol. Chem. 2012, 287, 848-857.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 848-857
-
-
Dong, X.1
Sumandea, C.A.2
Chen, Y.C.3
Garcia-Cazarin, M.L.4
-
126
-
-
79959963964
-
Phosphorylation, but not alternative splicing or proteolytic degradation, is conserved in human and mouse cardiac troponin T
-
Zhang, J., Zhang, H., Ayaz-Guner, S., Chen, Y. C. et al., Phosphorylation, but not alternative splicing or proteolytic degradation, is conserved in human and mouse cardiac troponin T. Biochemistry 2011, 50, 6081-6092.
-
(2011)
Biochemistry
, vol.50
, pp. 6081-6092
-
-
Zhang, J.1
Zhang, H.2
Ayaz-Guner, S.3
Chen, Y.C.4
-
127
-
-
77951839609
-
Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation
-
Ryan, C. M., Souda, P., Bassilian, S., Ujwal, R. et al., Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation. Mol. Cell. Proteomics 2010, 9, 791-803.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 791-803
-
-
Ryan, C.M.1
Souda, P.2
Bassilian, S.3
Ujwal, R.4
-
128
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
129
-
-
84878644042
-
Targeted quantitation of proteins by mass spectrometry
-
Liebler, D. C., Zimmerman, L. J., Targeted quantitation of proteins by mass spectrometry. Biochemistry 2013, 52, 3797-3806.
-
(2013)
Biochemistry
, vol.52
, pp. 3797-3806
-
-
Liebler, D.C.1
Zimmerman, L.J.2
-
130
-
-
84866538934
-
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
-
Shi, T., Fillmore, T. L., Sun, X., Zhao, R. et al., Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum. Proc. Natl. Acad. Sci. USA 2012, 109, 15395-15400.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 15395-15400
-
-
Shi, T.1
Fillmore, T.L.2
Sun, X.3
Zhao, R.4
-
131
-
-
77951965920
-
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
-
MacLean, B., Tomazela, D. M., Shulman, N., Chambers, M. et al., Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010, 26, 966-968.
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
-
132
-
-
84860854049
-
Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics
-
Shi, T., Su, D., Liu, T., Tang, K. et al., Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics. Proteomics 2012, 12, 1074-1092.
-
(2012)
Proteomics
, vol.12
, pp. 1074-1092
-
-
Shi, T.1
Su, D.2
Liu, T.3
Tang, K.4
-
133
-
-
61849105469
-
Mass spectrometry based targeted protein quantification: methods and applications
-
Pan, S., Aebersold, R., Chen, R., Rush, J. et al., Mass spectrometry based targeted protein quantification: methods and applications. J. Proteome Res. 2009, 8, 787-797.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 787-797
-
-
Pan, S.1
Aebersold, R.2
Chen, R.3
Rush, J.4
-
134
-
-
82355175131
-
Rapid empirical discovery of optimal peptides for targeted proteomics
-
Stergachis, A. B., MacLean, B., Lee, K., Stamatoyannopoulos, J. A., MacCoss, M. J., Rapid empirical discovery of optimal peptides for targeted proteomics. Nat. Methods 2011, 8, 1041-1043.
-
(2011)
Nat. Methods
, vol.8
, pp. 1041-1043
-
-
Stergachis, A.B.1
MacLean, B.2
Lee, K.3
Stamatoyannopoulos, J.A.4
MacCoss, M.J.5
-
135
-
-
77950415461
-
A rapid, reproducible, on-the-fly orthogonal array optimization method for targeted protein quantification by LC-MS and its application for accurate and sensitive quantification of carbonyl reductases in human liver
-
Cao, J., Gonzalez-Covarrubias, V., Straubinger, R. M., Wang, H. et al., A rapid, reproducible, on-the-fly orthogonal array optimization method for targeted protein quantification by LC-MS and its application for accurate and sensitive quantification of carbonyl reductases in human liver. Anal. Chem. 2010, 82, 2680-2689.
-
(2010)
Anal. Chem.
, vol.82
, pp. 2680-2689
-
-
Cao, J.1
Gonzalez-Covarrubias, V.2
Straubinger, R.M.3
Wang, H.4
-
136
-
-
84861142055
-
High-throughput method development for sensitive, accurate, and reproducible quantification of therapeutic monoclonal antibodies in tissues using orthogonal array optimization and nano liquid chromatography/selected reaction monitoring mass spectrometry
-
Duan, X., Abuqayyas, L., Dai, L., Balthasar, J. P., Qu, J., High-throughput method development for sensitive, accurate, and reproducible quantification of therapeutic monoclonal antibodies in tissues using orthogonal array optimization and nano liquid chromatography/selected reaction monitoring mass spectrometry. Anal. Chem. 2012, 84, 4373-4382.
-
(2012)
Anal. Chem.
, vol.84
, pp. 4373-4382
-
-
Duan, X.1
Abuqayyas, L.2
Dai, L.3
Balthasar, J.P.4
Qu, J.5
-
137
-
-
84864068370
-
Nano-scale liquid chromatography/mass spectrometry and on-the-fly orthogonal array optimization for quantification of therapeutic monoclonal antibodies and the application in preclinical analysis
-
Duan, X., Dai, L., Chen, S. C., Balthasar, J. P., Qu, J., Nano-scale liquid chromatography/mass spectrometry and on-the-fly orthogonal array optimization for quantification of therapeutic monoclonal antibodies and the application in preclinical analysis. J. Chromatogr. A 2012, 1251, 63-73.
-
(2012)
J. Chromatogr. A
, vol.1251
, pp. 63-73
-
-
Duan, X.1
Dai, L.2
Chen, S.C.3
Balthasar, J.P.4
Qu, J.5
-
138
-
-
8844233567
-
Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA)
-
Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B. et al., Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J. Proteome Res. 2004, 3, 235-244.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 235-244
-
-
Anderson, N.L.1
Anderson, N.G.2
Haines, L.R.3
Hardie, D.B.4
-
139
-
-
84873385425
-
Sequential protein and peptide immunoaffinity capture for mass spectrometry-based quantification of total human beta-nerve growth factor
-
Neubert, H., Muirhead, D., Kabir, M., Grace, C. et al., Sequential protein and peptide immunoaffinity capture for mass spectrometry-based quantification of total human beta-nerve growth factor. Anal. Chem. 2013, 85, 1719-1726.
-
(2013)
Anal. Chem.
, vol.85
, pp. 1719-1726
-
-
Neubert, H.1
Muirhead, D.2
Kabir, M.3
Grace, C.4
-
140
-
-
71049187147
-
Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution
-
Keshishian, H., Addona, T., Burgess, M., Mani, D. R. et al., Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2009, 8, 2339-2349.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2339-2349
-
-
Keshishian, H.1
Addona, T.2
Burgess, M.3
Mani, D.R.4
-
141
-
-
84885007580
-
Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis
-
Shi, T., Fillmore, T. L., Gao, Y., Zhao, R. et al., Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis. Anal. Chem. 2013, 85, 9196-9203.
-
(2013)
Anal. Chem.
, vol.85
, pp. 9196-9203
-
-
Shi, T.1
Fillmore, T.L.2
Gao, Y.3
Zhao, R.4
-
142
-
-
84856707623
-
Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring
-
Huillet, C., Adrait, A., Lebert, D., Picard, G. et al., Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring. Mol. Cell. Proteomics 2012, 11, M111 008235.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Huillet, C.1
Adrait, A.2
Lebert, D.3
Picard, G.4
-
143
-
-
84886937152
-
Fully validated LC-MS/MS assay for the simultaneous quantitation of coadministered therapeutic antibodies in cynomolgus monkey serum
-
Jiang, H., Zeng, J., Titsch, C., Voronin, K. et al., Fully validated LC-MS/MS assay for the simultaneous quantitation of coadministered therapeutic antibodies in cynomolgus monkey serum. Anal. Chem. 2013, 85, 9859-9867.
-
(2013)
Anal. Chem.
, vol.85
, pp. 9859-9867
-
-
Jiang, H.1
Zeng, J.2
Titsch, C.3
Voronin, K.4
-
144
-
-
77249165481
-
An immunoaffinity liquid chromatography-tandem mass spectrometry assay for the quantitation of matrix metalloproteinase 9 in mouse serum
-
Ocaña, M. F., Neubert, H., An immunoaffinity liquid chromatography-tandem mass spectrometry assay for the quantitation of matrix metalloproteinase 9 in mouse serum. Anal. Biochem. 2010, 399, 202-210.
-
(2010)
Anal. Biochem.
, vol.399
, pp. 202-210
-
-
Ocaña, M.F.1
Neubert, H.2
-
145
-
-
84897548365
-
Effects of calibration approaches on the accuracy for LC-MS targeted quantification of therapeutic protein
-
Nouri-Nigjeh, E., Zhang, M., Ji, T., Yu, H. et al., Effects of calibration approaches on the accuracy for LC-MS targeted quantification of therapeutic protein. Anal. Chem. 2014, 86, 3575-3584.
-
(2014)
Anal. Chem.
, vol.86
, pp. 3575-3584
-
-
Nouri-Nigjeh, E.1
Zhang, M.2
Ji, T.3
Yu, H.4
-
146
-
-
66449083773
-
Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry
-
Kuhn, E., Addona, T., Keshishian, H., Burgess, M. et al., Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry. Clin. Chem. 2009, 55, 1108-1117.
-
(2009)
Clin. Chem.
, vol.55
, pp. 1108-1117
-
-
Kuhn, E.1
Addona, T.2
Keshishian, H.3
Burgess, M.4
-
147
-
-
84860869256
-
MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma
-
Domanski, D., Percy, A. J., Yang, J., Chambers, A. G. et al., MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma. Proteomics 2012, 12, 1222-1243.
-
(2012)
Proteomics
, vol.12
, pp. 1222-1243
-
-
Domanski, D.1
Percy, A.J.2
Yang, J.3
Chambers, A.G.4
-
148
-
-
84864586482
-
Multiple reaction monitoring (MRM): principles and application to coronary artery disease
-
Cohen Freue, G. V., Borchers, C. H., Multiple reaction monitoring (MRM): principles and application to coronary artery disease. Circ. Cardiovasc. Genet. 2012, 5, 378.
-
(2012)
Circ. Cardiovasc. Genet.
, vol.5
, pp. 378
-
-
Cohen Freue, G.V.1
Borchers, C.H.2
-
149
-
-
84876903149
-
Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation
-
Cohen Freue, G. V., Meredith, A., Smith, D., Bergman, A. et al., Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation. PLoS Comput. Biol. 2013, 9, e1002963.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Cohen Freue, G.V.1
Meredith, A.2
Smith, D.3
Bergman, A.4
-
150
-
-
84896806206
-
Plasma proteome profiling of atherosclerotic disease manifestations reveals elevated levels of the cytoskeletal protein vinculin
-
Kristensen, L. P., Larsen, M. R., Mickley, H., Saaby, L. et al., Plasma proteome profiling of atherosclerotic disease manifestations reveals elevated levels of the cytoskeletal protein vinculin. J. Proteomics 2014, 101, 141-153.
-
(2014)
J. Proteomics
, vol.101
, pp. 141-153
-
-
Kristensen, L.P.1
Larsen, M.R.2
Mickley, H.3
Saaby, L.4
-
151
-
-
84864086168
-
An MRM-based workflow for quantifying cardiac mitochondrial protein phosphorylation in murine and human tissue
-
Lam, M. P., Scruggs, S. B., Kim, T. Y., Zong, C. et al., An MRM-based workflow for quantifying cardiac mitochondrial protein phosphorylation in murine and human tissue. J. Proteomics 2012, 75, 4602-4609.
-
(2012)
J. Proteomics
, vol.75
, pp. 4602-4609
-
-
Lam, M.P.1
Scruggs, S.B.2
Kim, T.Y.3
Zong, C.4
-
152
-
-
84877793561
-
Site-specific quantitative analysis of cardiac mitochondrial protein phosphorylation
-
Lam, M. P., Lau, E., Scruggs, S. B., Wang, D. et al., Site-specific quantitative analysis of cardiac mitochondrial protein phosphorylation. J. Proteomics 2013, 81, 15-23.
-
(2013)
J. Proteomics
, vol.81
, pp. 15-23
-
-
Lam, M.P.1
Lau, E.2
Scruggs, S.B.3
Wang, D.4
-
153
-
-
84867261884
-
Multiple reaction monitoring to identify site-specific troponin I phosphorylated residues in the failing human heart
-
Zhang, P., Kirk, J. A., Ji, W., dos Remedios, C. G. et al., Multiple reaction monitoring to identify site-specific troponin I phosphorylated residues in the failing human heart. Circulation 2012, 126, 1828-1837.
-
(2012)
Circulation
, vol.126
, pp. 1828-1837
-
-
Zhang, P.1
Kirk, J.A.2
Ji, W.3
dos Remedios, C.G.4
-
154
-
-
84885063647
-
PKCalpha-specific phosphorylation of the troponin complex in human myocardium: a functional and proteomics analysis
-
Kooij, V., Zhang, P., Piersma, S. R., Sequeira, V. et al., PKCalpha-specific phosphorylation of the troponin complex in human myocardium: a functional and proteomics analysis. PLoS One 2013, 8, e74847.
-
(2013)
PLoS One
, vol.8
-
-
Kooij, V.1
Zhang, P.2
Piersma, S.R.3
Sequeira, V.4
-
155
-
-
84884368148
-
Western blots versus selected reaction monitoring assays: time to turn the tables
-
Aebersold, R., Burlingame, A. L., Bradshaw, R. A., Western blots versus selected reaction monitoring assays: time to turn the tables? Mol. Cell. Proteomics 2013, 12, 2381-2382.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 2381-2382
-
-
Aebersold, R.1
Burlingame, A.L.2
Bradshaw, R.A.3
-
156
-
-
77951757994
-
Van Eyk, J. E., Multiplex assays for biomarker research and clinical application: translational science coming of age
-
Fu, Q., Schoenhoff, F. S., Savage, W. J., Zhang, P., Van Eyk, J. E., Multiplex assays for biomarker research and clinical application: translational science coming of age. Proteomics Clin. Appl. 2010, 4, 271-284.
-
(2010)
Proteomics Clin. Appl.
, vol.4
, pp. 271-284
-
-
Fu, Q.1
Schoenhoff, F.S.2
Savage, W.J.3
Zhang, P.4
-
157
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M. et al., The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 2011, 39, D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
-
158
-
-
84868590016
-
Microarray and proteomic analysis of the cardioprotective effects of cold blood cardioplegia in the mature and aged male and female
-
Black, K. M., Barnett, R. J., Bhasin, M. K., Daly, C. et al., Microarray and proteomic analysis of the cardioprotective effects of cold blood cardioplegia in the mature and aged male and female. Physiol. Genomics 2012, 44, 1027-1041.
-
(2012)
Physiol. Genomics
, vol.44
, pp. 1027-1041
-
-
Black, K.M.1
Barnett, R.J.2
Bhasin, M.K.3
Daly, C.4
-
159
-
-
84874678718
-
Proteomics: from single molecules to biological pathways
-
Langley, S. R., Dwyer, J., Drozdov, I., Yin, X., Mayr, M., Proteomics: from single molecules to biological pathways. Cardiovasc. Res. 2013, 97, 612-622.
-
(2013)
Cardiovasc. Res.
, vol.97
, pp. 612-622
-
-
Langley, S.R.1
Dwyer, J.2
Drozdov, I.3
Yin, X.4
Mayr, M.5
-
160
-
-
84891815508
-
The one hour yeast proteome
-
Hebert, A. S., Richards, A. L., Bailey, D. J., Ulbrich, A. et al., The one hour yeast proteome. Mol. Cell. Proteomics 2014, 13, 339-347.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 339-347
-
-
Hebert, A.S.1
Richards, A.L.2
Bailey, D.J.3
Ulbrich, A.4
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