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Volumn 52, Issue 3, 2014, Pages

Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing

Author keywords

Endocrine disruptors; Massive parallel sequencing; Steroid receptors; Zebrafish

Indexed keywords

ENDOCRINE DISRUPTOR; MICRORNA; TRANSCRIPTOME;

EID: 84901368199     PISSN: 09525041     EISSN: 14796813     Source Type: Journal    
DOI: 10.1530/JME-13-0219     Document Type: Review
Times cited : (38)

References (142)
  • 2
    • 80052149422 scopus 로고    scopus 로고
    • Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites
    • (doi:10.1016/j.ydbio. 2011.03.007)
    • Aday A. W, Zhu LJ, Lakshmanan A, Wang J & Lawson ND 2011 Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites. Developmental Biology 357 450-462. (doi:10.1016/j.ydbio. 2011.03.007)
    • (2011) Developmental Biology , vol.357 , pp. 450-462
    • Aday, A.W.1    Zhu, L.J.2    Lakshmanan, A.3    Wang, J.4    Lawson, N.D.5
  • 4
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • (doi:10.1186/gb-2010-11-10-r106)
    • Anders S. & Huber W 2010 Differential expression analysis for sequence count data. Genome Biology 11 R106. (doi:10.1186/gb-2010-11-10-r106)
    • (2010) Genome Biology , vol.11
    • Anders, S.1    Huber, W.2
  • 5
    • 84883364264 scopus 로고    scopus 로고
    • Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
    • (doi:10.1038/nprot.2013.099)
    • Anders S., McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W & Robinson M. D 2013 Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nature Protocols 8 1765-1786. (doi:10.1038/nprot.2013.099)
    • (2013) Nature Protocols , vol.8 , pp. 1765-1786
    • Anders, S.1    McCarthy, D.J.2    Chen, Y.3    Okoniewski, M.4    Smyth, G.K.5    Huber, W.6    Robinson, M.D.7
  • 6
    • 19944390217 scopus 로고    scopus 로고
    • Xenobiotics and the evolution of multicellular animals: Emergence and diversification of ligand-activated transcription factors
    • (doi:10.1093/icb/45.1.172)
    • Baker M. E 2005 Xenobiotics and the evolution of multicellular animals: emergence and diversification of ligand-activated transcription factors. Integrative and Comparative Biology 45 172-178. (doi:10.1093/icb/45.1.172)
    • (2005) Integrative and Comparative Biology , vol.45 , pp. 172-178
    • Baker, M.E.1
  • 7
    • 79957594105 scopus 로고    scopus 로고
    • Insights from the structure of estrogen receptor into the evolution of estrogens: Implications for endocrine disruption
    • (doi:10.1016/j.bcp.2011.03.008)
    • Baker M. E 2011 Insights from the structure of estrogen receptor into the evolution of estrogens: implications for endocrine disruption. Biochemical Pharmacology 82 1-8. (doi:10.1016/j.bcp.2011.03.008)
    • (2011) Biochemical Pharmacology , vol.82 , pp. 1-8
    • Baker, M.E.1
  • 8
    • 84872514647 scopus 로고    scopus 로고
    • What are the physiological estrogens?
    • (doi:10.1016/j.steroids.2012.12.011)
    • Baker M. E 2013 What are the physiological estrogens? Steroids 78 337-340. (doi:10.1016/j.steroids.2012.12.011)
    • (2013) Steroids , vol.78 , pp. 337-340
    • Baker, M.E.1
  • 9
    • 84867137699 scopus 로고    scopus 로고
    • 3D models of MBP, a biologically active metabolite of bisphenol A, in human estrogen receptor alpha and estrogen receptor beta
    • (doi:10.1371/journal.pone.0046078)
    • Baker M. E & Chandsawangbhuwana C 2012 3D models of MBP, a biologically active metabolite of bisphenol A, in human estrogen receptor alpha and estrogen receptor beta. PLoS ONE 7 e46078. (doi:10.1371/journal.pone.0046078)
    • (2012) PLoS ONE , vol.7
    • Baker, M.E.1    Chandsawangbhuwana, C.2
  • 11
    • 84879538657 scopus 로고    scopus 로고
    • Endocrine disruptors
    • In The Praeger Ed RH Friis. Westport, CT, USA: Greenwood Publishing Group Inc
    • Baker M., Sásik R, Gerwick L & Hardiman G 2012 Endocrine disruptors. In The Praeger Handbook of Environmental Health, pp 475-502. Ed RH Friis. Westport, CT, USA: Greenwood Publishing Group Inc.
    • (2012) Handbook of Environmental Health , pp. 475-502
    • Baker, M.1    Sásik, R.2    Gerwick, L.3    Hardiman, G.4
  • 12
    • 84884554625 scopus 로고    scopus 로고
    • Molecular analysis of endocrine disruption in hornyhead turbot at wastewater outfalls in Southern California using a second generation multi-species microarray
    • (doi:10.1371/journal.pone.0075553)
    • Baker M. E, Vidal-Dorsch DE, Ribecco C, Sprague LJ, Angert M, Lekmine N, Ludka C., Martella A, Ricciardelli E, Bay SM et al. 2013 Molecular analysis of endocrine disruption in hornyhead turbot at wastewater outfalls in Southern California using a second generation multi-species microarray. PLoS ONE 8 e75553. (doi:10.1371/journal.pone.0075553)
    • (2013) PLoS ONE , vol.8
    • Baker, M.E.1    Vidal-Dorsch, D.E.2    Ribecco, C.3    Sprague, L.J.4    Angert, M.5    Lekmine, N.6    Ludka, C.7    Martella, A.8    Ricciardelli, E.9    Bay, S.M.10
  • 14
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • (doi:10.1016/ j.cell.2007.05.009)
    • Barski A., Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I. & Zhao K 2007 High-resolution profiling of histone methylations in the human genome. Cell 129 823-837. (doi:10.1016/ j.cell.2007.05.009)
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 15
    • 84899004316 scopus 로고    scopus 로고
    • The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light
    • (doi:10.1093/nar/gkt1359)
    • Ben-Moshe Z., Alon S, Mracek P, Faigenbloom L, Tovin A, Vatine GD, Eisenberg E., Foulkes NS & Gothilf Y 2014 The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light. Nucleic Acids Research 42 3750-3767. (doi:10.1093/nar/gkt1359)
    • (2014) Nucleic Acids Research , vol.42 , pp. 3750-3767
    • Ben-Moshe, Z.1    Alon, S.2    Mracek, P.3    Faigenbloom, L.4    Tovin, A.5    Vatine, G.D.6    Eisenberg, E.7    Foulkes, N.S.8    Gothilf, Y.9
  • 17
    • 4944258189 scopus 로고    scopus 로고
    • Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
    • (doi:10.1093/molbev/msh200)
    • Bertrand S., Brunet FG, Escriva H, Parmentier G, Laudet V & Robinson-Rechavi M. 2004 Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems. Molecular Biology and Evolution 21 1923-1937. (doi:10.1093/molbev/msh200)
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 1923-1937
    • Bertrand, S.1    Brunet, F.G.2    Escriva, H.3    Parmentier, G.4    Laudet, V.5    Robinson-Rechavi, M.6
  • 19
    • 77950351991 scopus 로고    scopus 로고
    • Advances in pharmacogenomics technologies
    • (doi:10.2217/pgs.10.10)
    • Bhasker C. R & Hardiman G 2010 Advances in pharmacogenomics technologies. Pharmacogenomics 11 481-485. (doi:10.2217/pgs.10.10)
    • (2010) Pharmacogenomics , vol.11 , pp. 481-485
    • Bhasker, C.R.1    Hardiman, G.2
  • 20
    • 84884900317 scopus 로고    scopus 로고
    • The new sequencer on the block: Comparison of Life Technology's Proton sequencer to an Illumina HiSeq for whole-exome sequencing
    • (doi:10.1007/s00439-013-1321-4)
    • Boland J. F, Chung CC, Roberson D, Mitchell J, Zhang X, Im KM, He J, Chanock S. J, YeagerM& DeanM 2013 The new sequencer on the block: comparison of Life Technology's Proton sequencer to an Illumina HiSeq for whole-exome sequencing. Human Genetics 132 1153-1163. (doi:10.1007/s00439-013-1321-4)
    • (2013) Human Genetics , vol.132 , pp. 1153-1163
    • Boland, J.F.1    Chung, C.C.2    Roberson, D.3    Mitchell, J.4    Zhang, X.5    Im, K.M.6    He, J.7    Chanock, S.J.8    Yeager, M.9    Dean, M.10
  • 21
    • 55949095205 scopus 로고    scopus 로고
    • Keeping up with the next generation: Massively parallel sequencing in clinical diagnostics
    • (doi:10.2353/jmoldx.2008.080027)
    • ten Bosch J. R & Grody WW 2008 Keeping up with the next generation: massively parallel sequencing in clinical diagnostics. Journal of Molecular Diagnostics 10 484-492. (doi:10.2353/jmoldx.2008.080027)
    • (2008) Journal of Molecular Diagnostics , vol.10 , pp. 484-492
    • ten Bosch, J.R.1    Grody, W.W.2
  • 23
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • (doi:10.1038/4462)
    • Brown P. O & Botstein D 1999 Exploring the new world of the genome with DNA microarrays. Nature Genetics 21 33-37. (doi:10.1038/4462)
    • (1999) Nature Genetics , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 24
    • 39749187628 scopus 로고    scopus 로고
    • Exposure of the U.S. population to bisphenol A and 4-tertiary-octylphenol: 2003-2004
    • (doi:10.1289/ehp.10753)
    • Calafat A. M, Ye X, Wong LY, Reidy JA & Needham LL 2008 Exposure of the U.S. population to bisphenol A and 4-tertiary-octylphenol: 2003-2004. Environmental Health Perspectives 116 39-44. (doi:10.1289/ehp.10753)
    • (2008) Environmental Health Perspectives , vol.116 , pp. 39-44
    • Calafat, A.M.1    Ye, X.2    Wong, L.Y.3    Reidy, J.A.4    Needham, L.L.5
  • 25
    • 84864518203 scopus 로고    scopus 로고
    • Pacific Biosciences sequencing technology for genotyping and variation discovery in human data
    • (doi:10.1186/1471-2164-13-375)
    • Carneiro M. O, Russ C, Ross MG, Gabriel SB, Nusbaum C & DePristo MA Pacific Biosciences sequencing technology for genotyping and variation discovery in human data. BMC Genomics 13 375. (doi:10.1186/1471-2164-13-375)
    • BMC Genomics , vol.13 , pp. 375
    • Carneiro, M.O.1    Russ, C.2    Ross, M.G.3    Gabriel, S.B.4    Nusbaum, C.5    DePristo, M.A.6
  • 26
    • 73449088388 scopus 로고    scopus 로고
    • Pharmaceutical metabolites in the environment: Analytical challenges and ecological risks
    • (doi:10.1897/09-173.1)
    • Celiz M. D, Tso J & Aga DS 2009 Pharmaceutical metabolites in the environment: analytical challenges and ecological risks. Environmental Toxicology and Chemistry 28 2473-2484. (doi:10.1897/09-173.1)
    • (2009) Environmental Toxicology and Chemistry , vol.28 , pp. 2473-2484
    • Celiz, M.D.1    Tso, J.2    Aga, D.S.3
  • 27
    • 84875159324 scopus 로고    scopus 로고
    • Contaminants and impoSEX: Transcriptomics of contaminant-induced sex change
    • (doi:10.1111/mec.12254)
    • Chapman R. W & Guillette LJ 2013 Contaminants and impoSEX: transcriptomics of contaminant-induced sex change. Molecular Ecology 22 1485-1487. (doi:10.1111/mec.12254)
    • (2013) Molecular Ecology , vol.22 , pp. 1485-1487
    • Chapman, R.W.1    Guillette, L.J.2
  • 28
    • 0035976638 scopus 로고    scopus 로고
    • Nuclear receptors and lipid physiology: Opening the X-files
    • (doi:10.1126/science.294.5548.1866)
    • Chawla A., Repa JJ, Evans RM & Mangelsdorf DJ 2001 Nuclear receptors and lipid physiology: opening the X-files. Science 294 1866-1870. (doi:10.1126/science.294.5548.1866)
    • (2001) Science , vol.294 , pp. 1866-1870
    • Chawla, A.1    Repa, J.J.2    Evans, R.M.3    Mangelsdorf, D.J.4
  • 29
    • 74349104943 scopus 로고    scopus 로고
    • Generation of a fluorescent transgenic zebrafish for detection of environmental estrogens
    • (doi:10.1016/j. aquatox.2009.09.015)
    • Chen H., Hu J, Yang J, Wang Y, Xu H, Jiang Q, Gong Y, Gu Y & Song H 2010 Generation of a fluorescent transgenic zebrafish for detection of environmental estrogens. Aquatic Toxicology 96 53-61. (doi:10.1016/j. aquatox.2009.09.015)
    • (2010) Aquatic Toxicology , vol.96 , pp. 53-61
    • Chen, H.1    Hu, J.2    Yang, J.3    Wang, Y.4    Xu, H.5    Jiang, Q.6    Gong, Y.7    Gu, Y.8    Song, H.9
  • 31
    • 0027428381 scopus 로고
    • Developmental effects of endocrine-disrupting chemicals in wildlife and humans
    • (doi:10.1289/ehp.93101378)
    • Colborn T., vom Saal FS & Soto AM 1993 Developmental effects of endocrine-disrupting chemicals in wildlife and humans. Environmental Health Perspectives 101 378-384. (doi:10.1289/ehp.93101378)
    • (1993) Environmental Health Perspectives , vol.101 , pp. 378-384
    • Colborn, T.1    vom Saal, F.S.2    Soto, A.M.3
  • 34
    • 0034068307 scopus 로고    scopus 로고
    • Zebrafish: A model system for the study of human disease
    • (doi:10.1016/S0959-437X(00)00074-5)
    • Dooley K. & Zon LI 2000 Zebrafish: a model system for the study of human disease. Current Opinion in Genetics & Development 10 252-256. (doi:10.1016/S0959-437X(00)00074-5)
    • (2000) Current Opinion in Genetics & Development , vol.10 , pp. 252-256
    • Dooley, K.1    Zon, L.I.2
  • 37
    • 77953001864 scopus 로고    scopus 로고
    • Spatial and temporal variations of groundwater arsenic in South and Southeast Asia
    • (doi:10.1126/science.1172974)
    • Fendorf S., Michael HA & van Geen A 2010 Spatial and temporal variations of groundwater arsenic in South and Southeast Asia. Science 328 1123-1127. (doi:10.1126/science.1172974)
    • (2010) Science , vol.328 , pp. 1123-1127
    • Fendorf, S.1    Michael, H.A.2    van Geen, A.3
  • 38
    • 79954580291 scopus 로고    scopus 로고
    • Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
    • (doi:10.1186/1471-2164-12-202)
    • Fraser B. A, Weadick CJ, Janowitz I, Rodd FH & Hughes KA 2011 Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics 12 202. (doi:10.1186/1471-2164-12-202)
    • (2011) BMC Genomics , vol.12 , pp. 202
    • Fraser, B.A.1    Weadick, C.J.2    Janowitz, I.3    Rodd, F.H.4    Hughes, K.A.5
  • 40
    • 59849118673 scopus 로고    scopus 로고
    • Reconsidering the roles of the mineralocorticoid receptor
    • (doi:10.1161/HYPERTENSIONAHA.108. 119966)
    • Funder J. W 2009 Reconsidering the roles of the mineralocorticoid receptor. Hypertension 53 286-290. (doi:10.1161/HYPERTENSIONAHA.108. 119966)
    • (2009) Hypertension , vol.53 , pp. 286-290
    • Funder, J.W.1
  • 41
    • 79951676296 scopus 로고    scopus 로고
    • The gene regulatory networks controlled by estrogens
    • (doi:10.1016/j.mce.2010.09.002)
    • Gao H. & Dahlman-Wright K 2011 The gene regulatory networks controlled by estrogens. Molecular and Cellular Endocrinology 334 83-90. (doi:10.1016/j.mce.2010.09.002)
    • (2011) Molecular and Cellular Endocrinology , vol.334 , pp. 83-90
    • Gao, H.1    Dahlman-Wright, K.2
  • 42
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • (doi:10.1111/j.1755-0998.2011.03024.x)
    • Glenn T. C 2011 Field guide to next-generation DNA sequencers. Molecular Ecology Resources 11 759-769. (doi:10.1111/j.1755-0998.2011.03024.x)
    • (2011) Molecular Ecology Resources , vol.11 , pp. 759-769
    • Glenn, T.C.1
  • 43
    • 79959449678 scopus 로고    scopus 로고
    • Visualization of estrogen receptor transcriptional activation in zebrafish
    • (doi:10.1210/en.2010-1257)
    • Gorelick D. A & Halpern ME 2011 Visualization of estrogen receptor transcriptional activation in zebrafish. Endocrinology 152 2690-2703. (doi:10.1210/en.2010-1257)
    • (2011) Endocrinology , vol.152 , pp. 2690-2703
    • Gorelick, D.A.1    Halpern, M.E.2
  • 44
    • 8544252436 scopus 로고    scopus 로고
    • Physiological action of progesterone in target tissues
    • Graham J. D & Clarke CL 1997 Physiological action of progesterone in target tissues. Endocrine Reviews 18 502-519.
    • (1997) Endocrine Reviews , vol.18 , pp. 502-519
    • Graham, J.D.1    Clarke, C.L.2
  • 45
    • 84873723808 scopus 로고    scopus 로고
    • Chronic nanoparticulate silver exposure results in tissue accumulation and transcriptomic changes in zebrafish
    • (doi:10.1016/j.aquatox.2013.01.010)
    • Griffitt R. J, Lavelle CM, Kane AS, Denslow ND & Barber DS 2013 Chronic nanoparticulate silver exposure results in tissue accumulation and transcriptomic changes in zebrafish. Aquatic Toxicology 130-131 192-200. (doi:10.1016/j.aquatox.2013.01.010)
    • (2013) Aquatic Toxicology , vol.130-131 , pp. 192-200
    • Griffitt, R.J.1    Lavelle, C.M.2    Kane, A.S.3    Denslow, N.D.4    Barber, D.S.5
  • 46
    • 33646812194 scopus 로고    scopus 로고
    • Environmental obesogens: Organotins and endocrine disruption via nuclear receptor signaling
    • (doi:10.1210/en.2005-1129)
    • Grun F. & Blumberg B 2006 Environmental obesogens: organotins and endocrine disruption via nuclear receptor signaling. Endocrinology 147 S50-S55. (doi:10.1210/en.2005-1129)
    • (2006) Endocrinology , vol.147
    • Grun, F.1    Blumberg, B.2
  • 47
    • 3543068702 scopus 로고    scopus 로고
    • Microarray platforms-comparisons and contrasts
    • (doi:10.1517/14622416.5.5.487)
    • Hardiman G. 2004 Microarray platforms-comparisons and contrasts. Pharmacogenomics 5 487-502. (doi:10.1517/14622416.5.5.487)
    • (2004) Pharmacogenomics , vol.5 , pp. 487-502
    • Hardiman, G.1
  • 48
    • 40949113272 scopus 로고    scopus 로고
    • Ultra-high-throughput sequencing, microarray-based genomic selection and pharmacogenomics
    • (doi:10.2217/14622416.9.1.5)
    • Hardiman G. 2008 Ultra-high-throughput sequencing, microarray-based genomic selection and pharmacogenomics. Pharmacogenomics 9 5-9. (doi:10.2217/14622416.9.1.5)
    • (2008) Pharmacogenomics , vol.9 , pp. 5-9
    • Hardiman, G.1
  • 51
    • 67349125425 scopus 로고    scopus 로고
    • Role of nutrition and environmental endocrine disrupting chemicals during the perinatal period on the aetiology of obesity
    • (doi:10.1016/j.mce.2009.02.025)
    • Heindel J. J & vom Saal FS 2009 Role of nutrition and environmental endocrine disrupting chemicals during the perinatal period on the aetiology of obesity. Molecular and Cellular Endocrinology 304 90-96. (doi:10.1016/j.mce.2009.02.025)
    • (2009) Molecular and Cellular Endocrinology , vol.304 , pp. 90-96
    • Heindel, J.J.1    vom Saal, F.S.2
  • 53
    • 33646811829 scopus 로고    scopus 로고
    • Endocrine-disrupting chemicals use distinct mechanisms of action to modulate endocrine system function
    • (doi:10.1210/en.2005-1117)
    • Henley D. V & Korach KS 2006 Endocrine-disrupting chemicals use distinct mechanisms of action to modulate endocrine system function. Endocrinology 147 S25-S32. (doi:10.1210/en.2005-1117)
    • (2006) Endocrinology , vol.147
    • Henley, D.V.1    Korach, K.S.2
  • 55
    • 77951901129 scopus 로고    scopus 로고
    • Structural overview of the nuclear receptor superfamily: Insights into physiology and therapeutics
    • (doi:10.1146/ annurev-physiol-021909-135917)
    • Huang P., Chandra V & Rastinejad F 2010 Structural overview of the nuclear receptor superfamily: insights into physiology and therapeutics. Annual Review of Physiology 72 247-272. (doi:10.1146/ annurev-physiol-021909-135917)
    • (2010) Annual Review of Physiology , vol.72 , pp. 247-272
    • Huang, P.1    Chandra, V.2    Rastinejad, F.3
  • 57
    • 27944442420 scopus 로고    scopus 로고
    • Orphan nuclear receptors adopted by crystallography
    • (doi:10.1016/j.sbi.2005.10.009)
    • Ingraham H. A & Redinbo MR 2005 Orphan nuclear receptors adopted by crystallography. Current Opinion in Structural Biology 15 708-715. (doi:10.1016/j.sbi.2005.10.009)
    • (2005) Current Opinion in Structural Biology , vol.15 , pp. 708-715
    • Ingraham, H.A.1    Redinbo, M.R.2
  • 59
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • (doi:10.1126/science.1141319)
    • Johnson D. S, Mortazavi A, Myers RM & Wold B 2007 Genome-wide mapping of in vivo protein-DNA interactions. Science 316 1497-1502. (doi:10.1126/science.1141319)
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 60
    • 0018749247 scopus 로고
    • Zearalenones: Characterization of the estrogenic potencies and receptor interactions of a series of fungal b-resorcylic acid lactones
    • (doi:10.1210/endo-105-1-33)
    • Katzenellenbogen B. S, Katzenellenbogen JA & Mordecai D 1979 Zearalenones: characterization of the estrogenic potencies and receptor interactions of a series of fungal b-resorcylic acid lactones. Endocrinology 33-40. (doi:10.1210/endo-105-1-33)
    • (1979) Endocrinology , pp. 33-40
    • Katzenellenbogen, B.S.1    Katzenellenbogen, J.A.2    Mordecai, D.3
  • 62
    • 0023839436 scopus 로고
    • Estrogen receptor-binding activity of polychlorinated hydroxybiphenyls: Conformationally restricted structural probes
    • Korach K. S, Sarver P, Chae K, McLachlan JA & McKinney JD 1988 Estrogen receptor-binding activity of polychlorinated hydroxybiphenyls: conformationally restricted structural probes. Molecular Pharmacology 33 120-126.
    • (1988) Molecular Pharmacology , vol.33 , pp. 120-126
    • Korach, K.S.1    Sarver, P.2    Chae, K.3    McLachlan, J.A.4    McKinney, J.D.5
  • 64
    • 84862590549 scopus 로고    scopus 로고
    • Going beyond five bases in DNA sequencing
    • (doi:10.1016/j.sbi. 2012.04.002)
    • Korlach J. & Turner SW 2012 Going beyond five bases in DNA sequencing. Current Opinion in Structural Biology 22 251-261. (doi:10.1016/j.sbi. 2012.04.002)
    • (2012) Current Opinion in Structural Biology , vol.22 , pp. 251-261
    • Korlach, J.1    Turner, S.W.2
  • 66
    • 79951683482 scopus 로고    scopus 로고
    • Evolution of promiscuous nuclear hormone receptors: LXR, FXR, VDR, PXR, and CAR
    • (doi:10.1016/j.mce.2010.06.016)
    • Krasowski M. D, Ni A, Hagey LR & Ekins S 2011 Evolution of promiscuous nuclear hormone receptors: LXR, FXR, VDR, PXR, and CAR. Molecular and Cellular Endocrinology 334 39-48. (doi:10.1016/j.mce.2010.06.016)
    • (2011) Molecular and Cellular Endocrinology , vol.334 , pp. 39-48
    • Krasowski, M.D.1    Ni, A.2    Hagey, L.R.3    Ekins, S.4
  • 69
    • 0033931562 scopus 로고    scopus 로고
    • Cellular and molecular mechanisms of action of linuron: An antiandrogenic herbicide that produces reproductive malformations in male rats
    • (doi:10.1093/toxsci/56.2.389)
    • Lambright C., Ostby J, Bobseine K, Wilson V, Hotchkiss AK, Mann PC & Gray L. E Jr 2000 Cellular and molecular mechanisms of action of linuron: an antiandrogenic herbicide that produces reproductive malformations in male rats. Toxicological Sciences 56 389-399. (doi:10.1093/toxsci/56.2.389)
    • (2000) Toxicological Sciences , vol.56 , pp. 389-399
    • Lambright, C.1    Ostby, J.2    Bobseine, K.3    Wilson, V.4    Hotchkiss, A.K.5    Mann, P.C.6    Gray Jr., L.E.7
  • 71
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • (doi:10.1186/gb-2009-10-3-r25)
    • Langmead B., Trapnell C, Pop M & Salzberg SL 2009 Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biology 10 R25. (doi:10.1186/gb-2009-10-3-r25)
    • (2009) Genome Biology , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 72
    • 84864137541 scopus 로고    scopus 로고
    • Biosensor zebrafish provide new insights into potential health effects of environmental estrogens
    • (doi:10.1289/ ehp.1104433)
    • Lee O., Takesono A, Tada M, Tyler CR & Kudoh T 2012 Biosensor zebrafish provide new insights into potential health effects of environmental estrogens. Environmental Health Perspectives 120 990-996. (doi:10.1289/ ehp.1104433)
    • (2012) Environmental Health Perspectives , vol.120 , pp. 990-996
    • Lee, O.1    Takesono, A.2    Tada, M.3    Tyler, C.R.4    Kudoh, T.5
  • 75
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • (doi:10.1101/gr.078212.108)
    • Li H., Ruan J & Durbin R 2008 Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Research 18 1851-1858. (doi:10.1101/gr.078212.108)
    • (2008) Genome Research , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 76
    • 34247186766 scopus 로고    scopus 로고
    • Animal models of human disease: Zebrafish swim into view
    • (doi:10.1038/ nrg2091)
    • Lieschke G. J & Currie PD 2007 Animal models of human disease: zebrafish swim into view. Nature Reviews. Genetics 8 353-367. (doi:10.1038/ nrg2091)
    • (2007) Nature Reviews. Genetics , vol.8 , pp. 353-367
    • Lieschke, G.J.1    Currie, P.D.2
  • 78
    • 79961058104 scopus 로고    scopus 로고
    • Disruption of androgen receptor signaling in males by environmental chemicals
    • (doi:10.1016/j.jsbmb. 2011.04.004)
    • Luccio-Camelo D. C & Prins GS 2011 Disruption of androgen receptor signaling in males by environmental chemicals. Journal of Steroid Biochemistry and Molecular Biology 127 74-82. (doi:10.1016/j.jsbmb. 2011.04.004)
    • (2011) Journal of Steroid Biochemistry and Molecular Biology , vol.127 , pp. 74-82
    • Luccio-Camelo, D.C.1    Prins, G.S.2
  • 79
    • 84870679222 scopus 로고    scopus 로고
    • Rapid development of microsatellite markers for the endangered fish Schizothorax biddulphi (Günther) using next generation sequencing and cross-species amplification
    • (doi:10.3390/ijms131114946)
    • Luo W., Nie Z, Zhan F, Wei J, WangW& Gao Z 2012 Rapid development of microsatellite markers for the endangered fish Schizothorax biddulphi (Günther) using next generation sequencing and cross-species amplification. International Journal of Molecular Sciences 13 14946-14955. (doi:10.3390/ijms131114946)
    • (2012) International Journal of Molecular Sciences , vol.13 , pp. 14946-14955
    • Luo, W.1    Nie, Z.2    Zhan, F.3    Wei, J.4    Wang, W.5    Gao, Z.6
  • 81
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • (doi:10.1101/ gr.079558.108)
    • Marioni J. C, Mason CE, Mane SM, Stephens M & Gilad Y 2008 RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research 18 1509-1517. (doi:10.1101/ gr.079558.108)
    • (2008) Genome Research , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 82
    • 67749147582 scopus 로고    scopus 로고
    • Independent elaboration of steroid hormone signaling pathways in metazoans
    • (doi:10.1073/ pnas.0812138106)
    • Markov G. V, Tavares R, Dauphin-Villemant C, Demeneix BA, Baker ME & Laudet V. 2009 Independent elaboration of steroid hormone signaling pathways in metazoans. PNAS 106 11913-11918. (doi:10.1073/ pnas.0812138106)
    • (2009) PNAS , vol.106 , pp. 11913-11918
    • Markov, G.V.1    Tavares, R.2    Dauphin-Villemant, C.3    Demeneix, B.A.4    Baker, M.E.5    Laudet, V.6
  • 83
    • 84872823274 scopus 로고    scopus 로고
    • The mineralocorticoid signaling pathway throughout development: Expression, regulation and pathophysiological implications
    • (doi:10.1016/j.biochi.2012.09.030)
    • Martinerie L., Munier M, Le Menuet D, Meduri G, Viengchareun S & Lombes M. 2013 The mineralocorticoid signaling pathway throughout development: expression, regulation and pathophysiological implications. Biochimie 95 148-157. (doi:10.1016/j.biochi.2012.09.030)
    • (2013) Biochimie , vol.95 , pp. 148-157
    • Martinerie, L.1    Munier, M.2    Le Menuet, D.3    Meduri, G.4    Viengchareun, S.5    Lombes, M.6
  • 84
    • 84872249346 scopus 로고    scopus 로고
    • Brain on stress: How the social environment gets under the skin
    • (doi:10.1073/ pnas.1121254109)
    • McEwen B. S 2012 Brain on stress: how the social environment gets under the skin. PNAS 109 (Suppl 2) 17180-17185. (doi:10.1073/ pnas.1121254109)
    • (2012) PNAS , vol.109 , Issue.SUPPL. 2 , pp. 17180-17185
    • McEwen, B.S.1
  • 85
    • 81355147147 scopus 로고    scopus 로고
    • Identification and correction of systematic error in high-throughput sequence data
    • (doi:10.1186/1471-2105-12-451)
    • Meacham F., Boffelli D, Dhahbi J, Martin DI, SingerM& Pachter L 2011 Identification and correction of systematic error in high-throughput sequence data. BMCBioinformatics12451. (doi:10.1186/1471-2105-12-451)
    • (2011) BMCBioinformatics , pp. 12451
    • Meacham, F.1    Boffelli, D.2    Dhahbi, J.3    Martin, D.I.4    Singer, M.5    Pachter, L.6
  • 86
    • 84870495569 scopus 로고    scopus 로고
    • Progress in ion torrent semiconductor chip based sequencing
    • (doi:10.1002/elps.201200424)
    • Merriman B., Ion Torrent R&D Team & Rothberg JM 2012 Progress in ion torrent semiconductor chip based sequencing. Electrophoresis 33 3397-3417. (doi:10.1002/elps.201200424)
    • (2012) Electrophoresis , vol.33 , pp. 3397-3417
    • Merriman, B.1    Ion Torrent, R.2    Team, D.3    Rothberg, J.M.4
  • 87
    • 80455126001 scopus 로고    scopus 로고
    • Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems
    • (doi:10.1186/ gb-2011-12-11-r112)
    • Minoche A. E, Dohm JC & Himmelbauer H 2011 Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems. Genome Biology 12 R112. (doi:10.1186/ gb-2011-12-11-r112)
    • (2011) Genome Biology , vol.12
    • Minoche, A.E.1    Dohm, J.C.2    Himmelbauer, H.3
  • 88
    • 79956012862 scopus 로고    scopus 로고
    • Microarray analysis of XOPS-mCFP zebrafish retina identifies genes associated with rod photoreceptor degeneration and regeneration
    • (doi:10.1167/iovs.10-6022)
    • Morris A. C, Forbes-Osborne MA, Pillai LS & Fadool JM 2011 Microarray analysis of XOPS-mCFP zebrafish retina identifies genes associated with rod photoreceptor degeneration and regeneration. Investigative Ophthalmology & Visual Science 52 2255-2266. (doi:10.1167/iovs.10-6022)
    • (2011) Investigative Ophthalmology & Visual Science , vol.52 , pp. 2255-2266
    • Morris, A.C.1    Forbes-Osborne, M.A.2    Pillai, L.S.3    Fadool, J.M.4
  • 89
    • 84880172037 scopus 로고    scopus 로고
    • The cytochrome P450 genesis locus: The origin and evolution of animal cytochrome P450s. Philosophical Transactions of the Royal Society of London
    • (doi:10.1098/rstb.2012.0474)
    • Nelson D. R, Goldstone JV & Stegeman JJ 2013 The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s. Philosophical Transactions of the Royal Society of London. Series B, Biological sciences 368 20120474. (doi:10.1098/rstb.2012.0474)
    • (2013) Series B, Biological sciences , vol.368 , pp. 20120474
    • Nelson, D.R.1    Goldstone, J.V.2    Stegeman, J.J.3
  • 90
    • 54049102372 scopus 로고    scopus 로고
    • Glucocorticoid and mineralocorticoid action: Why should we consider influences by environmental chemicals?
    • (doi:10.1016/j.bcp.2008.07.019)
    • Odermatt A. & Gumy C 2008 Glucocorticoid and mineralocorticoid action: why should we consider influences by environmental chemicals? Biochemical Pharmacology 76 1184-1193. (doi:10.1016/j.bcp.2008.07.019)
    • (2008) Biochemical Pharmacology , vol.76 , pp. 1184-1193
    • Odermatt, A.1    Gumy, C.2
  • 91
    • 52949141865 scopus 로고    scopus 로고
    • A critical evaluation of the environmental risk assessment for plasticizers in the freshwater environment in Europe, with special emphasis on bisphenol A and endocrine disruption
    • (doi:10.1016/j.envres.2008.07.016)
    • Oehlmann J., Oetken M & Schulte-Oehlmann U 2008 A critical evaluation of the environmental risk assessment for plasticizers in the freshwater environment in Europe, with special emphasis on bisphenol A and endocrine disruption. Environmental Research 108 140-149. (doi:10.1016/j.envres.2008.07.016)
    • (2008) Environmental Research , vol.108 , pp. 140-149
    • Oehlmann, J.1    Oetken, M.2    Schulte-Oehlmann, U.3
  • 93
    • 78751570979 scopus 로고    scopus 로고
    • RNA sequencing: Advances, challenges and opportunities
    • (doi:10.1038/nrg2934)
    • Ozsolak F. & Milos PM 2011 RNA sequencing: advances, challenges and opportunities. Nature Reviews. Genetics 12 87-98. (doi:10.1038/nrg2934)
    • (2011) Nature Reviews. Genetics , vol.12 , pp. 87-98
    • Ozsolak, F.1    Milos, P.M.2
  • 94
    • 80053628299 scopus 로고    scopus 로고
    • Sequencing technologies and genome sequencing
    • (doi:10.1007/s13353-011-0057-x)
    • Pareek C. S, Smoczynski R & Tretyn A 2011 Sequencing technologies and genome sequencing. Journal of Applied Genetics 52 413-435. (doi:10.1007/s13353-011-0057-x)
    • (2011) Journal of Applied Genetics , vol.52 , pp. 413-435
    • Pareek, C.S.1    Smoczynski, R.2    Tretyn, A.3
  • 95
    • 84875167414 scopus 로고    scopus 로고
    • Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus
    • (doi:10.1111/mec.12137)
    • Pascoal S., Carvalho G, Vasieva O, Hughes R, Cossins A, Fang Y, Ashelford K, Olohan L., Barroso C, Mendo S et al. 2013 Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus. Molecular Ecology 22 1589-1608. (doi:10.1111/mec.12137)
    • (2013) Molecular Ecology , vol.22 , pp. 1589-1608
    • Pascoal, S.1    Carvalho, G.2    Vasieva, O.3    Hughes, R.4    Cossins, A.5    Fang, Y.6    Ashelford, K.7    Olohan, L.8    Barroso, C.9    Mendo, S.10
  • 96
    • 70449711243 scopus 로고    scopus 로고
    • Computation for ChIP-seq and RNAseq studies
    • (doi:10.1038/nmeth.1371)
    • Pepke S., Wold B & Mortazavi A 2009 Computation for ChIP-seq and RNAseq studies. Nature Methods 6 S22-S32. (doi:10.1038/nmeth.1371)
    • (2009) Nature Methods , vol.6
    • Pepke, S.1    Wold, B.2    Mortazavi, A.3
  • 98
    • 79551575231 scopus 로고    scopus 로고
    • Serum bisphenol A pharmacokinetics and prostate neoplastic responses following oral and subcutaneous exposures in neonatal Sprague-Dawley rats
    • (doi:10.1016/j.reprotox.2010.09.009)
    • Prins G. S, Ye SH, Birch L, Ho SM & Kannan K 2011 Serum bisphenol A pharmacokinetics and prostate neoplastic responses following oral and subcutaneous exposures in neonatal Sprague-Dawley rats. Reproductive Toxicology 31 1-9. (doi:10.1016/j.reprotox.2010.09.009)
    • (2011) Reproductive Toxicology , vol.31 , pp. 1-9
    • Prins, G.S.1    Ye, S.H.2    Birch, L.3    Ho, S.M.4    Kannan, K.5
  • 99
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeqsequencers
    • (doi:10.1186/1471-2164-13-341)
    • Quail M. A, SmithM, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow H. P & Gu Y 2012 A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeqsequencers. BMCGenomics13341. (doi:10.1186/1471-2164-13-341)
    • (2012) BMCGenomics , pp. 13341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3    Otto, T.D.4    Harris, S.R.5    Connor, T.R.6    Bertoni, A.7    Swerdlow, H.P.8    Gu, Y.9
  • 102
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-seq
    • (doi:10.1093/bioinformatics/btr355)
    • Roberts A., Pimentel H, Trapnell C & Pachter L 2011a Identification of novel transcripts in annotated genomes using RNA-seq. Bioinformatics 27 2325-2329. (doi:10.1093/bioinformatics/btr355)
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 103
    • 79952709611 scopus 로고    scopus 로고
    • Improving RNA-seq expression estimates by correcting for fragment bias
    • (doi:10.1186/gb-2011-12-3-r22)
    • Roberts A., Trapnell C, Donaghey J, Rinn JL & Pachter L 2011b Improving RNA-seq expression estimates by correcting for fragment bias. Genome Biology 12 R22. (doi:10.1186/gb-2011-12-3-r22)
    • (2011) Genome Biology , vol.12
    • Roberts, A.1    Trapnell, C.2    Donaghey, J.3    Rinn, J.L.4    Pachter, L.5
  • 105
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • (doi:10.1093/bioinformatics/btp616)
    • Robinson M. D, McCarthy DJ & Smyth GK 2010 edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 139-140. (doi:10.1093/bioinformatics/btp616)
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 106
    • 79960980803 scopus 로고    scopus 로고
    • Bisphenol A: An endocrine disruptor with widespread exposure and multiple effects
    • (doi:10.1016/j.jsbmb.2011.05.002)
    • Rubin B. S 2011 Bisphenol A: an endocrine disruptor with widespread exposure and multiple effects. Journal of Steroid Biochemistry and Molecular Biology 127 27-34. (doi:10.1016/j.jsbmb.2011.05.002)
    • (2011) Journal of Steroid Biochemistry and Molecular Biology , vol.127 , pp. 27-34
    • Rubin, B.S.1
  • 107
    • 84877079060 scopus 로고    scopus 로고
    • Global gene expression analysis reveals pathway differences between teratogenic and nonteratogenic exposure concentrations of bisphenol A and 17b-estradiol in embryonic zebrafish
    • (doi:10.1016/j.reprotox.2013.03.009)
    • Saili K. S, Tilton SC, Waters KM & Tanguay RL 2013 Global gene expression analysis reveals pathway differences between teratogenic and nonteratogenic exposure concentrations of bisphenol A and 17b-estradiol in embryonic zebrafish. Reproductive Toxicology 38 89-101. (doi:10.1016/j.reprotox.2013.03.009)
    • (2013) Reproductive Toxicology , vol.38 , pp. 89-101
    • Saili, K.S.1    Tilton, S.C.2    Waters, K.M.3    Tanguay, R.L.4
  • 110
    • 84876801883 scopus 로고    scopus 로고
    • Genomics: Zebrafish earns its stripes
    • (doi:10.1038/nature12094)
    • Schier A. F 2013 Genomics: zebrafish earns its stripes. Nature 496 443-444. (doi:10.1038/nature12094)
    • (2013) Nature , vol.496 , pp. 443-444
    • Schier, A.F.1
  • 111
    • 63749106101 scopus 로고    scopus 로고
    • Zebrafish (Danio rerio) as a model organism for investigating endocrine disruption. Comparative Biochemistry and Physiology
    • (doi:10.1016/j.cbpc.2008.10.099)
    • Segner H. 2009 Zebrafish (Danio rerio) as a model organism for investigating endocrine disruption. Comparative Biochemistry and Physiology. Toxicology & Pharmacology 149 187-195. (doi:10.1016/j.cbpc.2008.10.099)
    • (2009) Toxicology & Pharmacology , vol.149 , pp. 187-195
    • Segner, H.1
  • 112
    • 84861197052 scopus 로고    scopus 로고
    • Steroid biosynthesis and prostate cancer
    • (doi:10.1016/j.steroids.2012.03.015)
    • Sharifi N. & Auchus RJ 2012 Steroid biosynthesis and prostate cancer. Steroids 77 719-726. (doi:10.1016/j.steroids.2012.03.015)
    • (2012) Steroids , vol.77 , pp. 719-726
    • Sharifi, N.1    Auchus, R.J.2
  • 113
    • 79951671138 scopus 로고    scopus 로고
    • What are nuclear receptor ligands?
    • (doi:10.1016/j.mce.2010.06.018)
    • Sladek F. M 2011 What are nuclear receptor ligands? Molecular and Cellular Endocrinology 334 3-13. (doi:10.1016/j.mce.2010.06.018)
    • (2011) Molecular and Cellular Endocrinology , vol.334 , pp. 3-13
    • Sladek, F.M.1
  • 114
    • 33846456301 scopus 로고    scopus 로고
    • Parturition
    • (doi:10.1056/NEJMra061360)
    • Smith R. 2007 Parturition. New England Journal of Medicine 356 271-283. (doi:10.1056/NEJMra061360)
    • (2007) New England Journal of Medicine , vol.356 , pp. 271-283
    • Smith, R.1
  • 116
    • 0032052810 scopus 로고    scopus 로고
    • An updated review of environmental estrogen and androgen mimics and antagonists
    • (doi:10.1016/ S0960-0760(98)00027-2)
    • Sonnenschein C. & Soto AM 1998 An updated review of environmental estrogen and androgen mimics and antagonists. Journal of Steroid Biochemistry and Molecular Biology 65 143-150. (doi:10.1016/ S0960-0760(98)00027-2)
    • (1998) Journal of Steroid Biochemistry and Molecular Biology , vol.65 , pp. 143-150
    • Sonnenschein, C.1    Soto, A.M.2
  • 118
    • 67349176644 scopus 로고    scopus 로고
    • Interpreting endocrine disruption from an integrative biology perspective
    • (doi:10.1016/j.mce.2009.02.020)
    • Soto A. M, Rubin BS & Sonnenschein C 2009 Interpreting endocrine disruption from an integrative biology perspective. Molecular and Cellular Endocrinology 304 3-7. (doi:10.1016/j.mce.2009.02.020)
    • (2009) Molecular and Cellular Endocrinology , vol.304 , pp. 3-7
    • Soto, A.M.1    Rubin, B.S.2    Sonnenschein, C.3
  • 120
    • 79956066785 scopus 로고    scopus 로고
    • Comparison of sequence reads obtained from three next-generation sequencing platforms
    • (doi:10.1371/journal.pone.0019534)
    • Suzuki S., Ono N, Furusawa C, Ying BW & Yomo T 2011 Comparison of sequence reads obtained from three next-generation sequencing platforms. PLoS ONE 6 e19534. (doi:10.1371/journal.pone.0019534)
    • (2011) PLoS ONE , vol.6
    • Suzuki, S.1    Ono, N.2    Furusawa, C.3    Ying, B.W.4    Yomo, T.5
  • 121
    • 41749092365 scopus 로고    scopus 로고
    • Fetal and postnatal environmental exposures and reproductive health effects in the male: Recent findings
    • (doi:10.1016/j.fertnstert.2007.12.027)
    • Swan S. H 2008 Fetal and postnatal environmental exposures and reproductive health effects in the male: recent findings. Fertility and Sterility 89 e45. (doi:10.1016/j.fertnstert.2007.12.027)
    • (2008) Fertility and Sterility , vol.89
    • Swan, S.H.1
  • 125
    • 66149192669 scopus 로고    scopus 로고
    • How to map billions of short reads onto genomes
    • (doi:10.1038/nbt0509-455)
    • Trapnell C. & Salzberg SL 2009 How to map billions of short reads onto genomes. Nature Biotechnology 27 455-457. (doi:10.1038/nbt0509-455)
    • (2009) Nature Biotechnology , vol.27 , pp. 455-457
    • Trapnell, C.1    Salzberg, S.L.2
  • 126
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
    • (doi:10.1038/nbt.1621)
    • Trapnell C., Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg S. L, Wold BJ & Pachter L 2010 Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology 28 511-515. (doi:10.1038/nbt.1621)
    • (2010) Nature Biotechnology , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    van Baren, M.J.6    Salzberg, S.L.7    Wold, B.J.8    Pachter, L.9
  • 128
    • 68249092574 scopus 로고    scopus 로고
    • Massively parallel sequencing: The next big thing in genetic medicine
    • (doi:10.1016/j.ajhg.2009.06.022)
    • Tucker T., Marra M & Friedman JM 2009 Massively parallel sequencing: the next big thing in genetic medicine. American Journal of Human Genetics 85 142-154. (doi:10.1016/j.ajhg.2009.06.022)
    • (2009) American Journal of Human Genetics , vol.85 , pp. 142-154
    • Tucker, T.1    Marra, M.2    Friedman, J.M.3
  • 130
    • 46449103738 scopus 로고    scopus 로고
    • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    • (doi:10.1101/gr.076463.108)
    • Valouev A., Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek J. A, Costa G, McKernan K et al. 2008 A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Research 18 1051-1063. (doi:10.1101/gr.076463.108)
    • (2008) Genome Research , vol.18 , pp. 1051-1063
    • Valouev, A.1    Ichikawa, J.2    Tonthat, T.3    Stuart, J.4    Ranade, S.5    Peckham, H.6    Zeng, K.7    Malek, J.A.8    Costa, G.9    McKernan, K.10
  • 131
    • 60549106214 scopus 로고    scopus 로고
    • Bisphenol-A and the great divide: A review of controversies in the field of endocrine disruption
    • (doi:10.1210/ er.2008-0021)
    • Vandenberg L. N, Maffini MV, Sonnenschein C, Rubin BS & Soto AM 2009 Bisphenol-A and the great divide: a review of controversies in the field of endocrine disruption. Endocrine Reviews 30 75-95. (doi:10.1210/ er.2008-0021)
    • (2009) Endocrine Reviews , vol.30 , pp. 75-95
    • Vandenberg, L.N.1    Maffini, M.V.2    Sonnenschein, C.3    Rubin, B.S.4    Soto, A.M.5
  • 132
    • 84880655941 scopus 로고    scopus 로고
    • Biodegradation of endocrine disruptors in solid-liquid two-phase partitioning systems by enrichment cultures
    • (doi:10.1128/AEM.01239-13)
    • Villemur R., Dos Santos SC, Ouellette J, Juteau P, Lepine F & Deziel E 2013 Biodegradation of endocrine disruptors in solid-liquid two-phase partitioning systems by enrichment cultures. Applied and Environmental Microbiology 79 4701-4711. (doi:10.1128/AEM.01239-13)
    • (2013) Applied and Environmental Microbiology , vol.79 , pp. 4701-4711
    • Villemur, R.1    Dos Santos, S.C.2    Ouellette, J.3    Juteau, P.4    Lepine, F.5    Deziel, E.6
  • 133
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: From basic research to diagnostics
    • (doi:10.1373/clinchem.2008.112789)
    • Voelkerding K. V, Dames SA & Durtschi JD 2009 Next-generation sequencing: from basic research to diagnostics. Clinical Chemistry 55 641-658. (doi:10.1373/clinchem.2008.112789)
    • (2009) Clinical Chemistry , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 134
    • 57749195712 scopus 로고    scopus 로고
    • RNA-seq: A revolutionary tool for transcriptomics
    • (doi:10.1038/ nrg2484)
    • Wang Z., GersteinM& SnyderM 2009 RNA-seq: a revolutionary tool for transcriptomics. Nature Reviews. Genetics 10 57-63. (doi:10.1038/ nrg2484)
    • (2009) Nature Reviews. Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 135
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: An R package for identifying differentially expressed genes from RNA-seq data
    • (doi:10.1093/bioinformatics/ btp612)
    • Wang L., Feng Z, Wang X, Wang X & Zhang X 2010 DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26 136-138. (doi:10.1093/bioinformatics/ btp612)
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Wang, X.4    Zhang, X.5
  • 136
    • 0037109138 scopus 로고    scopus 로고
    • An endocrine pathway in the prostate, ERb, AR, 5a-androstane-3b,17b-diol, and CYP7B1, regulates prostate growth
    • (doi:10.1073/pnas.162477299)
    • Weihua Z., Lathe R, Warner M & Gustafsson J-A 2002 An endocrine pathway in the prostate, ERb, AR, 5a-androstane-3b,17b-diol, and CYP7B1, regulates prostate growth. PNAS 99 13589-13594. (doi:10.1073/pnas.162477299)
    • (2002) PNAS , vol.99 , pp. 13589-13594
    • Weihua, Z.1    Lathe, R.2    Warner, M.3    Gustafsson, J.-A.4
  • 137
    • 84879330562 scopus 로고    scopus 로고
    • Principles of transcriptome analysis and gene expression quantification: An RNA-seq tutorial
    • (doi:10.1111/1755-0998.12109)
    • Wolf J. B 2013 Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial. Molecular Ecology Resources 13 559-572. (doi:10.1111/1755-0998.12109)
    • (2013) Molecular Ecology Resources , vol.13 , pp. 559-572
    • Wolf, J.B.1
  • 139
    • 84880843181 scopus 로고    scopus 로고
    • Genome-wide identification of molecular pathways and biomarkers in response to arsenic exposure in zebrafish liver
    • (doi:10.1371/journal.pone.0068737)
    • Xu H., Lam SH, Shen Y & Gong Z 2013 Genome-wide identification of molecular pathways and biomarkers in response to arsenic exposure in zebrafish liver. PLoS ONE 8 e68737. (doi:10.1371/journal.pone.0068737)
    • (2013) PLoS ONE , vol.8
    • Xu, H.1    Lam, S.H.2    Shen, Y.3    Gong, Z.4
  • 140
    • 16844377815 scopus 로고    scopus 로고
    • Short-term effects of endocrine-disrupting chemicals on the expression of estrogen-responsive genes in male medaka (Oryzias latipes)
    • (doi:10.1016/j.aquatox.2004.12.011)
    • Yamaguchi A., Ishibashi H, Kohra S, Arizono K & Tominaga N 2005 Short-term effects of endocrine-disrupting chemicals on the expression of estrogen-responsive genes in male medaka (Oryzias latipes). Aquatic Toxicology 72 239-249. (doi:10.1016/j.aquatox.2004.12.011)
    • (2005) Aquatic Toxicology , vol.72 , pp. 239-249
    • Yamaguchi, A.1    Ishibashi, H.2    Kohra, S.3    Arizono, K.4    Tominaga, N.5
  • 142
    • 18144399332 scopus 로고    scopus 로고
    • The human glucocorticoid receptor: One gene, multiple proteins and diverse responses
    • (doi:10.1016/j.steroids.2005.02.006)
    • Zhou J. & Cidlowski JA 2005 The human glucocorticoid receptor: one gene, multiple proteins and diverse responses. Steroids 70 407-417. (doi:10.1016/j.steroids.2005.02.006)
    • (2005) Steroids , vol.70 , pp. 407-417
    • Zhou, J.1    Cidlowski, J.A.2


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