-
1
-
-
79957589242
-
Confutation of the existence of sequence-conserved cytochrome P450 enzymes in Plasmodium falciparum
-
doi:10.1016/j.actatropica.2011.03.006
-
Wisedpanichkij R, Grams R, Chaijaroenkul W, Na-Bangchang K. 2011 Confutation of the existence of sequence-conserved cytochrome P450 enzymes in Plasmodium falciparum. Acta Trop. 119, 19-22. (doi:10.1016/j.actatropica.2011.03.006)
-
(2011)
Acta Trop
, vol.119
, pp. 19-22
-
-
Wisedpanichkij, R.1
Grams, R.2
Chaijaroenkul, W.3
Na-Bangchang, K.4
-
2
-
-
84863693752
-
The genomes of tomato and its closest wild relative provide insights on evolution of plant genomes
-
The tomato genome consortium, doi:10.1038/nature11119
-
The tomato genome consortium. 2012 The genomes of tomato and its closest wild relative provide insights on evolution of plant genomes. Nature 485, 635-641. (doi:10.1038/nature11119)
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
3
-
-
84355166513
-
The Medicago genome provides insight into the evolution of rhizobial symbioses
-
doi:10.1038/nature10625
-
Young ND et al. 2011 The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524. (doi:10.1038/nature10625)
-
(2011)
Nature
, vol.480
, pp. 520-524
-
-
Young, N.D.1
-
4
-
-
9044254525
-
P450 superfamily: Update on new sequences, gene mapping, accession numbers and nomenclature
-
doi:10.1097/00008571-199602000-00002
-
Nelson DR et al. 1996 P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. Pharmacogenetics 6, 1-42. (doi:10.1097/00008571-199602000-00002)
-
(1996)
Pharmacogenetics
, vol.6
, pp. 1-42
-
-
Nelson, D.R.1
-
5
-
-
33744911365
-
A revised evolutionary history of the CYP1A subfamily: Gene duplication, gene conversion, and positive selection
-
doi:10.1007/s00239-005-0134-z
-
Goldstone HM, Stegeman JJ. 2006 A revised evolutionary history of the CYP1A subfamily: gene duplication, gene conversion, and positive selection. J. Mol. Evol. 62, 708-717. (doi:10.1007/s00239-005-0134-z)
-
(2006)
J. Mol. Evol
, vol.62
, pp. 708-717
-
-
Goldstone, H.M.1
Stegeman, J.J.2
-
6
-
-
0028848859
-
A cluster of cytochrome P450 genes of the CYP6 family in the house fly
-
doi:10.1089/dna.1995.14.73
-
Cohen MB, Feyereisen R. 1995 A cluster of cytochrome P450 genes of the CYP6 family in the house fly. DNA Cell Biol. 14, 73-82. (doi:10.1089/dna.1995.14.73)
-
(1995)
DNA Cell Biol
, vol.14
, pp. 73-82
-
-
Cohen, M.B.1
Feyereisen, R.2
-
7
-
-
0026629691
-
Evolution of a highly polymorphic human cytochrome P450 gene cluster: CYP2D6
-
doi:10.1016/S0888-7543(05)80282-4
-
Heim MH, Meyer UA. 1992 Evolution of a highly polymorphic human cytochrome P450 gene cluster: CYP2D6. Genomics 14, 49-58. (doi:10.1016/S0888-7543(05)80282-4)
-
(1992)
Genomics
, vol.14
, pp. 49-58
-
-
Heim, M.H.1
Meyer, U.A.2
-
8
-
-
79951514308
-
Cytochrome P450 CYP2 genes in the common cormorant: Evolutionary relationships with 130 diapsid CYP2 clan sequences and chemical effects on their expression
-
doi:10.1016/j.cbpc.2010.11.006
-
Kubota A, Stegeman JJ, Goldstone JV, Nelson DR, Kim EY, Tanabe S, Iwata H. 2011 Cytochrome P450 CYP2 genes in the common cormorant: evolutionary relationships with 130 diapsid CYP2 clan sequences and chemical effects on their expression. Comp. Biochem. Physiol. Toxicol. Pharmacol. 153, 280-289. (doi:10.1016/j.cbpc.2010.11.006)
-
(2011)
Comp. Biochem. Physiol. Toxicol. Pharmacol
, vol.153
, pp. 280-289
-
-
Kubota, A.1
Stegeman, J.J.2
Goldstone, J.V.3
Nelson, D.R.4
Kim, E.Y.5
Tanabe, S.6
Iwata, H.7
-
9
-
-
0842312531
-
Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants
-
doi:10.1097/00008571-200401000-00001
-
Nelson DR, Zeldin DC, Hoffman SM, Maltais LJ, Wain HM, Nebert DW. 2004 Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Pharmacogenetics 14, 1-18. (doi:10.1097/00008571-200401000-00001)
-
(2004)
Pharmacogenetics
, vol.14
, pp. 1-18
-
-
Nelson, D.R.1
Zeldin, D.C.2
Hoffman, S.M.3
Maltais, L.J.4
Wain, H.M.5
Nebert, D.W.6
-
10
-
-
84880141647
-
Origins of P450 diversity
-
doi:10.1098/rstb.2012.0428
-
Sezutsu H, Le Goff G, Feyereisen R. 2013 Origins of P450 diversity. Phil. Trans. R. Soc. B 368, 20120428. (doi:10.1098/rstb.2012.0428)
-
(2013)
Phil. Trans. R. Soc
, vol.B368
, pp. 20120428
-
-
Sezutsu, H.1
Le, G.G.2
Feyereisen, R.3
-
11
-
-
0033199227
-
Cytochrome P450 and the individuality of species
-
doi:10.1006/abbi.1999.1352
-
Nelson DR. 1999 Cytochrome P450 and the individuality of species. Arch. Biochem. Biophys. 369, 1-10. (doi:10.1006/abbi.1999.1352)
-
(1999)
Arch. Biochem. Biophys
, vol.369
, pp. 1-10
-
-
Nelson, D.R.1
-
12
-
-
0031795556
-
Metazoan cytochrome P450 evolution
-
Nelson DR. 1998 Metazoan cytochrome P450 evolution. Comp. Biochem. Physiol. 121, 15-22)
-
(1998)
Comp. Biochem. Physiol
, vol.121
, pp. 15-22
-
-
Nelson, D.R.1
-
13
-
-
0037223831
-
Comparison of P450s from human and fugu: 420 million years of vertebrate P450 evolution
-
doi:10.1016/S0003-9861(02)00553-2
-
Nelson DR. 2003 Comparison of P450s from human and fugu: 420 million years of vertebrate P450 evolution. Arch. Biochem. Biophys. 409, 18-24. (doi:10.1016/S0003-9861(02)00553-2)
-
(2003)
Arch. Biochem. Biophys
, vol.409
, pp. 18-24
-
-
Nelson, D.R.1
-
14
-
-
52149110322
-
Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes
-
doi:10.1038/nature07307
-
Lee DS, Nioche P, Hamberg M, Raman CS. 2008 Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes. Nature 455, 363-368. (doi:10.1038/nature07307)
-
(2008)
Nature
, vol.455
, pp. 363-368
-
-
Lee, D.S.1
Nioche, P.2
Hamberg, M.3
Raman, C.S.4
-
15
-
-
46949092431
-
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes
-
doi:10.1098/rsbl.2008.0224
-
Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008 Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol. Lett. 4, 366-369. (doi:10.1098/rsbl.2008.0224)
-
(2008)
Biol. Lett
, vol.4
, pp. 366-369
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Pawlowski, J.3
-
16
-
-
33745468278
-
Cell evolution and Earth history: Stasis and revolution
-
doi:10.1098/rstb.2006.1842
-
Cavalier-Smith T. 2006 Cell evolution and Earth history: stasis and revolution. Phil. Trans. R. Soc. B 361, 969-1006. (doi:10.1098/rstb.2006.1842)
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 969-1006
-
-
Cavalier-Smith, T.1
-
17
-
-
84858411861
-
Rooting the eukaryotic tree with mitochondrial and bacterial proteins
-
doi:10.1093/molbev/msr295
-
Derelle R, Lang BF. 2012 Rooting the eukaryotic tree with mitochondrial and bacterial proteins. Mol. Biol. Evol. 29, 1277-1289. (doi:10.1093/molbev/msr295)
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1277-1289
-
-
Derelle, R.1
Lang, B.F.2
-
18
-
-
0034647710
-
Sterol 14-demethylase P450 (CYP51) provides a breakthrough for the discussion on the evolution of cytochrome P450 gene superfamily
-
doi:10.1006/bbrc.2000.3030
-
Yoshida Y, Aoyama Y, Noshiro M, Gotoh O. 2000 Sterol 14-demethylase P450 (CYP51) provides a breakthrough for the discussion on the evolution of cytochrome P450 gene superfamily. Biochem. Biophys. Res. Commun. 273, 799-804. (doi:10.1006/bbrc.2000.3030)
-
(2000)
Biochem. Biophys. Res. Commun
, vol.273
, pp. 799-804
-
-
Yoshida, Y.1
Aoyama, Y.2
Noshiro, M.3
Gotoh, O.4
-
19
-
-
18844473326
-
New aspects on lanosterol 14alpha-demethylase and cytochrome P450 evolution: Lanosterol/cycloartenol diversification and lateral transfer
-
doi:10.1007/s00239-004-2603-1
-
Rezen T, Debeljak N, Kordis D, Rozman D. 2004 New aspects on lanosterol 14alpha-demethylase and cytochrome P450 evolution: lanosterol/cycloartenol diversification and lateral transfer. J. Mol. Evol. 59, 51-58. (doi:10.1007/s00239-004-2603-1)
-
(2004)
J. Mol. Evol
, vol.59
, pp. 51-58
-
-
Rezen, T.1
Debeljak, N.2
Kordis, D.3
Rozman, D.4
-
20
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith T. 2002 The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 52, 7-76)
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
21
-
-
68149122283
-
Automated identification of conserved synteny after whole-genome duplication
-
doi:10.1101/gr.090480.108
-
Catchen JM, Conery JS, Postlethwait JH. 2009 Automated identification of conserved synteny after whole-genome duplication. Genome Res. 19, 1497-1505. (doi:10.1101/gr.090480.108)
-
(2009)
Genome Res
, vol.19
, pp. 1497-1505
-
-
Catchen, J.M.1
Conery, J.S.2
Postlethwait, J.H.3
-
22
-
-
0036741566
-
Measures of synteny conservation between species pairs
-
Housworth EA, Postlethwait J. 2002 Measures of synteny conservation between species pairs. Genetics 162, 441-448.
-
(2002)
Genetics
, vol.162
, pp. 441-448
-
-
Housworth, E.A.1
Postlethwait, J.2
-
23
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
doi:10.1038/nature06967
-
Putnam NH et al. 2008 The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064-1071. (doi:10.1038/nature06967)
-
(2008)
Nature
, vol.453
, pp. 1064-1071
-
-
Putnam, N.H.1
-
24
-
-
33746778352
-
Isolation and phylogeny of novel cytochrome P450 genes from tunicates (Ciona spp.): A CYP3 line in early deuterostomes
-
doi:10.1016/j.ympev.2006.04.017
-
Verslycke T, Goldstone JV, Stegeman JJ. 2006 Isolation and phylogeny of novel cytochrome P450 genes from tunicates (Ciona spp.): a CYP3 line in early deuterostomes? Mol. Phylogenet. Evol. 40, 760-771. (doi:10.1016/j.ympev.2006.04.017)
-
(2006)
Mol. Phylogenet. Evol
, vol.40
, pp. 760-771
-
-
Verslycke, T.1
Goldstone, J.V.2
Stegeman, J.J.3
-
26
-
-
0034020782
-
Robustness: It's not where you think it is
-
doi:10.1038/75560
-
Wolfe K. 2000 Robustness: it's not where you think it is. Nat. Genet. 25, 3-4. (doi:10.1038/75560)
-
(2000)
Nat. Genet
, vol.25
, pp. 3-4
-
-
Wolfe, K.1
-
27
-
-
34948908604
-
The zebrafish genome in context: Ohnologs gone missing
-
doi:10.1002/jez.b.21137
-
Postlethwait JH. 2007 The zebrafish genome in context: ohnologs gone missing. J. Exp. Zool. B Mol. Dev. Evol. 308, 563-577. (doi:10.1002/jez.b.21137)
-
(2007)
J. Exp. Zool. B Mol. Dev. Evol
, vol.308
, pp. 563-577
-
-
Postlethwait, J.H.1
-
28
-
-
4444340536
-
Subfunction partitioning, the teleost radiation and the annotation of the human genome
-
doi:10.1016/j.tig.2004.08.001
-
Postlethwait J, Amores A, Cresko W, Singer A, Yan YL. 2004 Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet. 20, 481-490. (doi:10.1016/j.tig.2004.08.001)
-
(2004)
Trends Genet
, vol.20
, pp. 481-490
-
-
Postlethwait, J.1
Amores, A.2
Cresko, W.3
Singer, A.4
Yan, Y.L.5
-
29
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
doi:10.1371/journal.pbio.0030314
-
Dehal P, Boore JL. 2005 Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 3, e314. (doi:10.1371/journal.pbio.0030314)
-
(2005)
PLoS Biol
, vol.3
-
-
Dehal, P.1
Boore, J.L.2
-
30
-
-
26244444380
-
From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)
-
doi:10.1002/bies.20293
-
Meyer A, Van de Peer Y. 2005 From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). BioEssays 27, 937-945. (doi:10.1002/bies.20293)
-
(2005)
BioEssays
, vol.27
, pp. 937-945
-
-
Meyer, A.1
Van de Peer, Y.2
-
31
-
-
35248812530
-
Comparative genomics of ParaHox clusters of teleost fishes: Gene cluster breakup and the retention of gene sets following whole genome duplications
-
doi:10.1186/1471-2164-8-312
-
Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A. 2007 Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. BMC Genomics 8, 312. (doi:10.1186/1471-2164-8-312)
-
(2007)
BMC Genomics
, vol.8
, pp. 312
-
-
Siegel, N.1
Hoegg, S.2
Salzburger, W.3
Braasch, I.4
Meyer, A.5
-
32
-
-
56849126764
-
Insights into cyclostome phylogenomics: Pre-2R or post-2R
-
doi:10.2108/zsj.25.960
-
Kuraku S. 2008 Insights into cyclostome phylogenomics: pre-2R or post-2R. Zool. Sci. 25, 960-968. (doi:10.2108/zsj.25.960)
-
(2008)
Zool. Sci
, vol.25
, pp. 960-968
-
-
Kuraku, S.1
-
33
-
-
57749184792
-
Timing of genome duplications relative to the origin of the vertebrates: Did cyclostomes diverge before or after
-
doi:10.1093/molbev/msn222
-
Kuraku S, Meyer A, Kuratani S. 2009 Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Mol. Biol. Evol. 26, 47-59. (doi:10.1093/molbev/msn222)
-
(2009)
Mol. Biol. Evol
, vol.26
, pp. 47-59
-
-
Kuraku, S.1
Meyer, A.2
Kuratani, S.3
-
34
-
-
72749099971
-
Assessing the root of bilaterian animals with scalable phylogenomic methods
-
doi:10.1098/rspb.2009.0896
-
Hejnol A et al. 2009 Assessing the root of bilaterian animals with scalable phylogenomic methods. Proc. R. Soc. B 276, 4261-4270. (doi:10.1098/rspb.2009.0896)
-
(2009)
Proc. R. Soc. B
, vol.276
, pp. 4261-4270
-
-
Hejnol, A.1
-
35
-
-
83655184682
-
Phylogenetic and functional analyses of the cytochrome P450 family 4
-
doi:10.1016/j.ympev.2011.10.016
-
Kirischian NL, Wilson JY. 2012 Phylogenetic and functional analyses of the cytochrome P450 family 4. Mol. Phylogenet. Evol. 62, 458-471. (doi:10.1016/j.ympev.2011.10.016)
-
(2012)
Mol. Phylogenet. Evol
, vol.62
, pp. 458-471
-
-
Kirischian, N.L.1
Wilson, J.Y.2
-
36
-
-
80052667788
-
Higher-level metazoan relationships: Recent progress and remaining questions
-
doi:10.1007/s13127-011-0044-4
-
Edgecombe GD, Giribet G, Dunn CW, Hejnol A, Kristensen RM, Neves RC, Rouse GW, Worsaae K, Sorensen MV. 2011 Higher-level metazoan relationships: recent progress and remaining questions. Org. Divers. Evol. 11, 151-172. (doi:10.1007/s13127-011-0044-4)
-
(2011)
Org. Divers. Evol
, vol.11
, pp. 151-172
-
-
Edgecombe, G.D.1
Giribet, G.2
Dunn, C.W.3
Hejnol, A.4
Kristensen, R.M.5
Neves, R.C.6
Rouse, G.W.7
Worsaae, K.8
Sorensen, M.V.9
-
37
-
-
0037159052
-
New evidence on the anatomy and phylogeny of the earliest vertebrates
-
doi:10.1098/rspb.2002.2104
-
Xian-Guang H, Aldridge RJ, Siveter DJ, Siveter DJ, Xiang-hong F. 2002 New evidence on the anatomy and phylogeny of the earliest vertebrates. Proc. R. Soc. Lond. B 269, 1865-1869. (doi:10.1098/rspb.2002.2104)
-
(2002)
Proc. R. Soc. Lond. B
, vol.269
, pp. 1865-1869
-
-
Xian-Guang, H.1
Aldridge, R.J.2
Siveter, D.J.3
Siveter, D.J.4
Xiang-Hong, F.5
-
38
-
-
7444230652
-
-
London, UK: Blackwell Publishing Ltd
-
Xian-Guang H, Aldridge RJ, Bergström J, Siveter DJ, Siveter DJ, Xiang-hong F. 2003 The Cambrian fossils of Chengjiang, China: the flowering of early animal life. London, UK: Blackwell Publishing Ltd.
-
(2003)
The Cambrian Fossils of Chengjiang, China: The Flowering of Early Animal Life
-
-
Xian-Guang, H.1
Aldridge, R.J.2
Bergström, J.3
Siveter, D.J.4
Siveter, D.J.5
Xiang-Hong, F.6
-
39
-
-
63649155968
-
The oldest articulated osteichthyan reveals mosaic gnathostome characters
-
doi:10.1038/nature07855
-
Zhu M, Zhao W, Jia L, Lu J, Qiao T, Qu Q. 2009 The oldest articulated osteichthyan reveals mosaic gnathostome characters. Nature 458, 469-474. (doi:10.1038/nature07855.
-
(2009)
Nature
, vol.458
, pp. 469-474
-
-
Zhu, M.1
Zhao, W.2
Jia, L.3
Lu, J.4
Qiao, T.5
Qu, Q.6
-
40
-
-
0029667387
-
Scales of thelodont and shark-like fishes from the Ordovician of Colorado
-
doi:10.1038/379628a0
-
Sansom IJ, Smith MM, Smith MP. 1996 Scales of thelodont and shark-like fishes from the Ordovician of Colorado. Nature 379, 628-630. (doi:10.1038/379628a0)
-
(1996)
Nature
, vol.379
, pp. 628-630
-
-
Sansom, I.J.1
Smith, M.M.2
Smith, M.P.3
-
41
-
-
84872197089
-
-
Animals (Metazoa) In The timetree of life (eds SB Hedges, S Kumar), Oxford, UK: Oxford University Press
-
Blair JE. 2009 Animals (Metazoa) In The timetree of life (eds SB Hedges, S Kumar), pp. 223-230. Oxford, UK: Oxford University Press.
-
(2009)
, pp. 223-230
-
-
Blair, J.E.1
-
42
-
-
2942568227
-
A molecular timescale of eukaryote evolution and the rise of complex multicellular life
-
doi:10.1186/1471-2148-4-2
-
Hedges SB, Blair JE, Venturi ML, Shoe JL. 2004 A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol. Biol. 4, 2. (doi:10.1186/1471-2148-4-2)
-
(2004)
BMC Evol. Biol
, vol.4
, pp. 2
-
-
Hedges, S.B.1
Blair, J.E.2
Venturi, M.L.3
Shoe, J.L.4
-
43
-
-
0032575722
-
A neoproterozoic snowball earth
-
doi:10.1126/science.281.5381.1342
-
Hoffman PF, Kaufman AJ, Halverson GP, Schrag DP. 1998 A neoproterozoic snowball earth. Science 281, 1342-1346. (doi:10.1126/science.281.5381.1342)
-
(1998)
Science
, vol.281
, pp. 1342-1346
-
-
Hoffman, P.F.1
Kaufman, A.J.2
Halverson, G.P.3
Schrag, D.P.4
-
44
-
-
84872172734
-
Snowball Earth: Status and new developments
-
IGC Special Climate Issue
-
Hoffman PF. 2008 Snowball Earth: status and new developments. GEO (IGC Special Climate Issue) 11, 44-46.
-
(2008)
GEO
, vol.11
, pp. 44-46
-
-
Hoffman, P.F.1
-
45
-
-
0034672219
-
MetaHox gene clusters
-
(doi:10.1002/1097-010X(20001215)288:4,345:: AID-JEZ7.3.0.CO;2-Y)
-
Coulier F, Popovici C, Villet R, Birnbaum D. 2000 MetaHox gene clusters. J. Exp. Zool. 288, 345-351. (doi:10.1002/1097-010X(20001215)288:4,345:: AID-JEZ7.3.0.CO;2-Y)
-
(2000)
J. Exp. Zool
, vol.288
, pp. 345-351
-
-
Coulier, F.1
Popovici, C.2
Villet, R.3
Birnbaum, D.4
-
46
-
-
79955094039
-
The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
-
doi:10.1186/2041-9139-1-9
-
Ryan JF, Pang K, Mullikin JC, Martindale MQ, Baxevanis AD. 2010 The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo 1, 9. (doi:10.1186/2041-9139-1-9)
-
(2010)
Evodevo
, vol.1
, pp. 9
-
-
Ryan, J.F.1
Pang, K.2
Mullikin, J.C.3
Martindale, M.Q.4
Baxevanis, A.D.5
-
47
-
-
80155172617
-
Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome
-
doi:10.3109/19401736.2011.624611
-
Pett W, Ryan JF, Pang K, Mullikin JC, Martindale MQ, Baxevanis AD, Lavrov DV. 2011 Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: insight from mtDNA and the nuclear genome. Mitochondrial DNA 22, 130-142. (doi:10.3109/19401736.2011.624611)
-
(2011)
Mitochondrial DNA
, vol.22
, pp. 130-142
-
-
Pett, W.1
Ryan, J.F.2
Pang, K.3
Mullikin, J.C.4
Martindale, M.Q.5
Baxevanis, A.D.6
Lavrov, D.V.7
-
48
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
doi:10.1038/nature06614
-
Dunn CW et al. 2008 Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452, 745-749. (doi:10.1038/nature06614)
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
-
49
-
-
24344440632
-
The zebrafish gene map defines ancestral vertebrate chromosomes
-
doi:10.1101/gr.4134305
-
Woods IG et al. 2005 The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 15, 1307-1314. (doi:10.1101/gr.4134305)
-
(2005)
Genome Res
, vol.15
, pp. 1307-1314
-
-
Woods, I.G.1
-
50
-
-
28544439832
-
Significant microsynteny with new evolutionary highlights is detected between Arabidopsis and legume model plants despite the lack of macrosynteny
-
doi:10.1007/s00438-005-0057-9
-
Kevei Z, Seres A, Kereszt A, Kalo P, Kiss P, Toth G, Endre G, Kiss GB. 2005 Significant microsynteny with new evolutionary highlights is detected between Arabidopsis and legume model plants despite the lack of macrosynteny. Mol. Genet. Genomics 274, 644-657. (doi:10.1007/s00438-005-0057-9)
-
(2005)
Mol. Genet. Genomics
, vol.274
, pp. 644-657
-
-
Kevei, Z.1
Seres, A.2
Kereszt, A.3
Kalo, P.4
Kiss, P.5
Toth, G.6
Endre, G.7
Kiss, G.B.8
-
51
-
-
84870512646
-
Extensive conservation of ancient microsynteny across metazoans due to cisregulatory constraints
-
doi:10.1101/gr.139725.112
-
Irimia M et al. 2012 Extensive conservation of ancient microsynteny across metazoans due to cisregulatory constraints. Genome Res. (doi:10.1101/gr.139725.112)
-
(2012)
Genome Res
-
-
Irimia, M.1
-
52
-
-
0037266536
-
2R or not 2R: Testing hypotheses of genome duplication in early vertebrates
-
doi:10.1023/A:1022681600462
-
Hughes AL, Friedman R. 2003. 2R or not 2R: testing hypotheses of genome duplication in early vertebrates. J. Struct. Funct. Genom. 3, 85-93. (doi:10.1023/A:1022681600462)
-
(2003)
J. Struct. Funct. Genom
, vol.3
, pp. 85-93
-
-
Hughes, A.L.1
Friedman, R.2
-
53
-
-
0037227485
-
The temporal distribution of gene duplication events in a set of highly conserved human gene families
-
Friedman R, Hughes AL. 2003 The temporal distribution of gene duplication events in a set of highly conserved human gene families. Mol. Biol. Evol. 20, 154-161)
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 154-161
-
-
Friedman, R.1
Hughes, A.L.2
-
54
-
-
0036079158
-
The human genome browser at UCSC
-
doi:10.1101/gr.229102
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. 2002 The human genome browser at UCSC. Genome Res. 12, 996-1006. (doi:10.1101/gr.229102)
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
55
-
-
78651320424
-
The UCSC genome browser database: Update 2011
-
doi:10.1093/nar/gkq963
-
Fujita PA et al. 2011 The UCSC genome browser database: update 2011. Nucleic Acids Res. 39, D876-D882. (doi:10.1093/nar/gkq963)
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
-
56
-
-
58149178565
-
The UCSC genome browser database: Update 2009
-
doi:10.1093/nar/gkn875
-
Kuhn RM et al. 2009 The UCSC genome browser database: update 2009. Nucleic Acids Res. 37, D755-D761. (doi:10.1093/nar/gkn875)
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Kuhn, R.M.1
-
57
-
-
0036226603
-
BLAT: The BLAST-like alignment tool
-
doi:10.1101/gr.229202
-
Kent WJ. 2002 BLAT: the BLAST-like alignment tool. Genome Res. 12, 656-664. (doi:10.1101/gr.229202)
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
58
-
-
50049092481
-
The Trichoplax genome and the nature of placozoans
-
doi:10.1038/nature07191
-
Srivastava M et al. 2008 The Trichoplax genome and the nature of placozoans. Nature 454, 955-960. (doi:10.1038/nature07191)
-
(2008)
Nature
, vol.454
, pp. 955-960
-
-
Srivastava, M.1
-
59
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
doi:10.1126/science.1139158
-
Putnam NH et al. 2007 Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86-94. (doi:10.1126/science.1139158)
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
-
60
-
-
80051936630
-
Using the Acropora digitifera genome to understand coral responses to environmental change
-
doi:10.1038/nature10249
-
Shinzato C et al. 2011 Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476, 320-323. (doi:10.1038/nature10249)
-
(2011)
Nature
, vol.476
, pp. 320-323
-
-
Shinzato, C.1
-
61
-
-
37549041908
-
The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome
-
doi:10.1016/j.ydbio.2006.08.066
-
Goldstone JV et al. 2006 The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome. Dev. Biol. 300, 366-384. (doi:10.1016/j.ydbio.2006.08.066)
-
(2006)
Dev. Biol
, vol.300
, pp. 366-384
-
-
Goldstone, J.V.1
-
62
-
-
56349172169
-
Environmental sensing and response genes in Cnidaria: The chemical defensome in the sea anemone Nematostella vectensis
-
doi:10.1007/s10565-008-9107-5
-
Goldstone JV. 2008 Environmental sensing and response genes in Cnidaria: the chemical defensome in the sea anemone Nematostella vectensis. Cell Biol. Toxicol. 24, 483-502. (doi:10.1007/s10565-008-9107-5)
-
(2008)
Cell Biol. Toxicol
, vol.24
, pp. 483-502
-
-
Goldstone, J.V.1
-
63
-
-
78349237831
-
Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish
-
doi:10.1186/1471-2164-11-643
-
Goldstone JV, McArthur AG, Kubota A, Zanette J, Parente T, Jonsson ME, Nelson DR, Stegeman JJ. 2010 Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish. BMC Genom. 11, 643. (doi:10.1186/1471-2164-11-643)
-
(2010)
BMC Genom
, vol.11
, pp. 643
-
-
Goldstone, J.V.1
McArthur, A.G.2
Kubota, A.3
Zanette, J.4
Parente, T.5
Jonsson, M.E.6
Nelson, D.R.7
Stegeman, J.J.8
-
64
-
-
65549112976
-
The cytochrome P450 (CYP) gene superfamily in Daphnia pulex
-
doi:10.1186/1471-2164-10-169
-
Baldwin WS, Marko PB, Nelson DR. 2009 The cytochrome P450 (CYP) gene superfamily in Daphnia pulex. BMC Genom. 10, 169. (doi:10.1186/1471-2164-10-169)
-
(2009)
BMC Genom
, vol.10
, pp. 169
-
-
Baldwin, W.S.1
Marko, P.B.2
Nelson, D.R.3
-
65
-
-
34248657991
-
Evolution of insect P450
-
doi:10.1042/ BST0341252
-
Feyereisen R. 2006 Evolution of insect P450. Biochem. Soc. Trans. 34, 1252-1255. (doi:10.1042/ BST0341252)
-
(2006)
Biochem. Soc. Trans
, vol.34
, pp. 1252-1255
-
-
Feyereisen, R.1
-
66
-
-
80055082271
-
Accelerated profile HMM searches
-
doi:10.1371/journal.pcbi.1002195.g001
-
Eddy SR. 2011 Accelerated profile HMM searches. PLoS Comput. Biol. 7, e1002195. (doi:10.1371/journal.pcbi.1002195.g001)
-
(2011)
PLoS Comput. Biol
, vol.7
-
-
Eddy, S.R.1
-
67
-
-
77955591777
-
Hidden markov model speed heuristic and iterative HMM search procedure
-
doi:10.1186/1471-2105-11-431
-
Johnson LS, Eddy SR, Portugaly E. 2010 Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11, 431. (doi:10.1186/1471-2105-11-431)
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 431
-
-
Johnson, L.S.1
Eddy, S.R.2
Portugaly, E.3
-
68
-
-
0031743421
-
Profile hidden Markov models
-
doi:10.1093/bioinformatics/14.9.755
-
Eddy SR. 1998 Profile hidden Markov models. Bioinformatics 14, 755-763. (doi:10.1093/bioinformatics/14.9.755)
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
69
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
doi:10.1186/1471-2105-5-113
-
Edgar RC. 2004 MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 113. (doi:10.1186/1471-2105-5-113)
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
70
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
doi:10.1093/bioinformatics/btl446
-
Stamatakis A. 2006 RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690. (doi:10.1093/bioinformatics/btl446)
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
71
-
-
56849127431
-
-
ACM/IEEE Supercomputing conference 2007 (ed. B Verastegui), New York, NY: Association for Computing Machinery
-
Ott M, Zola J, Aluru S, Stamatakis A. 2007 Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. In ACM/IEEE Supercomputing conference 2007 (ed. B Verastegui), New York, NY: Association for Computing Machinery.
-
(2007)
Large-scale Maximum Likelihood-based Phylogenetic Analysis On the IBM BlueGene/L
-
-
Ott, M.1
Zola, J.2
Aluru, S.3
Stamatakis, A.4
-
73
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
doi:10.1080/ 10635150802429642
-
Stamatakis A, Hoover P, Rougemont J. 2008 A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57, 758-771. (doi:10.1080/ 10635150802429642)
-
(2008)
Syst. Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
74
-
-
0347532847
-
Applying the bootstrap in phylogeny reconstruction
-
Soltis PS, Soltis DE. 2003 Applying the bootstrap in phylogeny reconstruction. Stat. Sci. 18, 256-267.
-
(2003)
Stat. Sci
, vol.18
, pp. 256-267
-
-
Soltis, P.S.1
Soltis, D.E.2
-
75
-
-
78649445838
-
Arthropod CYPomes illustrate the tempo and mode in P450 evolution
-
doi:10.1016/j.bbapap.2010.06.012
-
Feyereisen R. 2011 Arthropod CYPomes illustrate the tempo and mode in P450 evolution. Biochim. Biophys. Acta 1814, 19-28. (doi:10.1016/j.bbapap.2010.06.012)
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 19-28
-
-
Feyereisen, R.1
-
76
-
-
34249736446
-
Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates
-
doi:10.1371/journal.pgen.0030067
-
Thomas JH. 2007 Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates. PLoS Genet. 3, e67. (doi:10.1371/journal.pgen.0030067)
-
(2007)
PLoS Genet
, vol.3
-
-
Thomas, J.H.1
-
77
-
-
38549120238
-
CYP3 phylogenomics: Evidence for positive selection of CYP3A4 and CYP3A7
-
doi:10.1097/ FPC.0b013e3282f313f8
-
Qiu H et al. 2008 CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7. Pharmacogenet. Genom. 18, 53-66. (doi:10.1097/ FPC.0b013e3282f313f8)
-
(2008)
Pharmacogenet. Genom
, vol.18
, pp. 53-66
-
-
Qiu, H.1
-
78
-
-
0027507739
-
Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
-
doi:10.1038/366265a0
-
Brenner S, Elgar G, Sandford R, Macrae A, Venkatesh B, Aparicio S. 1993 Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366, 265-268. (doi:10.1038/366265a0)
-
(1993)
Nature
, vol.366
, pp. 265-268
-
-
Brenner, S.1
Elgar, G.2
Sandford, R.3
Macrae, A.4
Venkatesh, B.5
Aparicio, S.6
-
79
-
-
80255136273
-
Bimodal targeting of cytochrome P450s to endoplasmic reticulum and mitochondria: The concept of chimeric signals
-
doi:10.1111/j.1742-4658.2011.08356.x
-
Avadhani NG, Sangar MC, Bansal S, Bajpai P. 2011 Bimodal targeting of cytochrome P450s to endoplasmic reticulum and mitochondria: the concept of chimeric signals. FEBS J. 278, 4218-4229. (doi:10.1111/j.1742-4658.2011.08356.x)
-
(2011)
FEBS J
, vol.278
, pp. 4218-4229
-
-
Avadhani, N.G.1
Sangar, M.C.2
Bansal, S.3
Bajpai, P.4
-
80
-
-
0033588378
-
Dual targeting property of the N-terminal signal sequence of P4501A1. Targeting of heterologous proteins to endoplasmic reticulum and mitochondria
-
doi:10.1074/jbc.274.34.24014
-
Bhagwat SV, Biswas G, Anandatheerthavarada HK, Addya S, Pandak W, Avadhani NG. 1999 Dual targeting property of the N-terminal signal sequence of P4501A1. Targeting of heterologous proteins to endoplasmic reticulum and mitochondria. J. Biol. Chem. 274, 24.014-24.022. (doi:10.1074/jbc.274.34.24014)
-
(1999)
J. Biol. Chem
, vol.274
-
-
Bhagwat, S.V.1
Biswas, G.2
Anandatheerthavarada, H.K.3
Addya, S.4
Pandak, W.5
Avadhani, N.G.6
-
81
-
-
0035815726
-
Identification and characterization of a mitochondrial targeting signal in rat cytochrome P450. 2E1 (CYP2E1)
-
doi:10.1074/jbc. M008640200
-
Neve EP, Ingelman-Sundberg M. 2001 Identification and characterization of a mitochondrial targeting signal in rat cytochrome P450. 2E1 (CYP2E1). J. Biol. Chem. 276, 11. 317-11. 322. (doi:10.1074/jbc. M008640200)
-
(2001)
J. Biol. Chem
, vol.276
-
-
Neve, E.P.1
Ingelman-Sundberg, M.2
-
82
-
-
79951671502
-
Origin and evolution of the ligand-binding ability of nuclear receptors
-
doi:10.1016/j.mce. 2010.10.017
-
Markov GV, Laudet V. 2011 Origin and evolution of the ligand-binding ability of nuclear receptors. Mol. Cell. Endocrinol. 334, 21-30. (doi:10.1016/j.mce. 2010.10.017)
-
(2011)
Mol. Cell. Endocrinol
, vol.334
, pp. 21-30
-
-
Markov, G.V.1
Laudet, V.2
-
83
-
-
19944390217
-
Xenobiotics and the evolution of multicellular animals: Emergence and diversification of ligand-activated transcription factors
-
doi:10.1093/icb/ 45.1.172
-
Baker ME. 2005 Xenobiotics and the evolution of multicellular animals: emergence and diversification of ligand-activated transcription factors. Integr. Comp. Biol. 45, 172-178. (doi:10.1093/icb/ 45.1.172)
-
(2005)
Integr. Comp. Biol
, vol.45
, pp. 172-178
-
-
Baker, M.E.1
-
84
-
-
51849090160
-
The early ANTP gene repertoire: Insights from the placozoan genome
-
doi:10.1371/journal. pone.0002457
-
Schierwater B, Kamm K, Srivastava M, Rokhsar D, Rosengarten RD, Dellaporta SL. 2008 The early ANTP gene repertoire: insights from the placozoan genome. PloS ONE 3, e2457. (doi:10.1371/journal. pone.0002457)
-
(2008)
PloS ONE
, vol.3
-
-
Schierwater, B.1
Kamm, K.2
Srivastava, M.3
Rokhsar, D.4
Rosengarten, R.D.5
Dellaporta, S.L.6
-
85
-
-
59049087109
-
A synthesized pheromone induces upstream movement in female sea lamprey and summons them into traps
-
doi:10.1073/pnas.0808530106
-
Johnson NS, Yun SS, Thompson HT, Brant CO, Li W. 2009 A synthesized pheromone induces upstream movement in female sea lamprey and summons them into traps. Proc. Natl Acad. Sci. USA 106, 1021-1026. (doi:10.1073/pnas.0808530106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 1021-1026
-
-
Johnson, N.S.1
Yun, S.S.2
Thompson, H.T.3
Brant, C.O.4
Li, W.5
-
86
-
-
33846545127
-
Cyp26 enzymes generate the retinoic acid response pattern necessary for hindbrain development
-
doi:10.1242/dev.02706
-
Hernandez RE, Putzke AP, Myers JP, Margaretha L, Moens CB. 2007 Cyp26 enzymes generate the retinoic acid response pattern necessary for hindbrain development. Development 134, 177-187. (doi:10.1242/dev.02706)
-
(2007)
Development
, vol.134
, pp. 177-187
-
-
Hernandez, R.E.1
Putzke, A.P.2
Myers, J.P.3
Margaretha, L.4
Moens, C.B.5
-
87
-
-
12944336526
-
Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish
-
doi:10.1016/j.ydbio.2004.11.023
-
Emoto Y, Wada H, Okamoto H, Kudo A, Imai Y. 2005 Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish. Dev. Biol. 278, 415-427. (doi:10.1016/j.ydbio.2004.11.023)
-
(2005)
Dev. Biol
, vol.278
, pp. 415-427
-
-
Emoto, Y.1
Wada, H.2
Okamoto, H.3
Kudo, A.4
Imai, Y.5
-
88
-
-
0032976946
-
Dorsal and ventral retinal territories defined by retinoic acid synthesis, break-down and nuclear receptor expression
-
doi:10.1016/S0925-4773(99)00022-2
-
McCaffery P, Wagner E, O'Neil J, Petkovich M, Drager UC. 1999 Dorsal and ventral retinal territories defined by retinoic acid synthesis, break-down and nuclear receptor expression. Mech. Dev. 82, 119-130. (doi:10.1016/S0925-4773(99)00022-2)
-
(1999)
Mech. Dev
, vol.82
, pp. 119-130
-
-
McCaffery, P.1
Wagner, E.2
O'Neil, J.3
Petkovich, M.4
Drager, U.C.5
-
89
-
-
28844480094
-
Arf family GTPases: Roles in membrane traffic and microtubule dynamics
-
doi:10.1042/BST20051269
-
Kahn RA, Volpicelli-Daley L, Bowzard B, Shrivastava- Ranjan P, Li Y, Zhou C, Cunningham L. 2005 Arf family GTPases: roles in membrane traffic and microtubule dynamics. Biochem. Soc. Trans. 33, 1269-1272. (doi:10.1042/BST20051269)
-
(2005)
Biochem. Soc. Trans
, vol.33
, pp. 1269-1272
-
-
Kahn, R.A.1
Volpicelli-Daley, L.2
Bowzard, B.3
Shrivastava-Ranjan, P.4
Li, Y.5
Zhou, C.6
Cunningham, L.7
-
90
-
-
23844460551
-
The Arf-like GTPase Arl1 and its role in membrane traffic
-
doi:10.1042/BST0330601
-
Munro S. 2005 The Arf-like GTPase Arl1 and its role in membrane traffic. Biochem. Soc. Trans. 33, 601-605. (doi:10.1042/BST0330601)
-
(2005)
Biochem. Soc. Trans
, vol.33
, pp. 601-605
-
-
Munro, S.1
-
91
-
-
33644526287
-
Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins
-
doi:10.1083/jcb.200512057
-
Kahn RA, Cherfils J, Elias M, Lovering RC, Munro S, Schurmann A. 2006 Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins. J. Cell Biol. 172, 645-650. (doi:10.1083/jcb.200512057)
-
(2006)
J. Cell Biol
, vol.172
, pp. 645-650
-
-
Kahn, R.A.1
Cherfils, J.2
Elias, M.3
Lovering, R.C.4
Munro, S.5
Schurmann, A.6
-
92
-
-
84880144950
-
Human cytochromes P450 in health and disease
-
doi:10.1098/rstb. 2012.0431
-
Nebert D, Wikvall K, Miller WL. 2013 Human cytochromes P450 in health and disease. Phil. Trans. R. Soc. B 368, 20120431. (doi:10.1098/rstb. 2012.0431)
-
(2013)
Phil. Trans. R. Soc
, vol.368
-
-
Nebert, D.1
Wikvall, K.2
Miller, W.L.3
-
93
-
-
67749147582
-
Independent elaboration of steroid hormone signaling pathways in metazoans
-
doi:10.1073/pnas. 0812138106
-
Markov GV, Tavares R, Dauphin-Villemant C, Demeneix BA, Baker ME, Laudet V. 2009 Independent elaboration of steroid hormone signaling pathways in metazoans. Proc. Natl Acad. Sci. USA 106, 11. 913-11. 918. (doi:10.1073/pnas. 0812138106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
-
-
Markov, G.V.1
Tavares, R.2
Dauphin-Villemant, C.3
Demeneix, B.A.4
Baker, M.E.5
Laudet, V.6
-
94
-
-
34547104371
-
Presence of sex steroids and cytochrome P450 genes in amphioxus
-
doi:10.1210/en. 2007-0109
-
Mizuta T, Kubokawa K. 2007 Presence of sex steroids and cytochrome P450 genes in amphioxus. Endocrinology 148, 3554-3565. (doi:10.1210/en. 2007-0109)
-
(2007)
Endocrinology
, vol.148
, pp. 3554-3565
-
-
Mizuta, T.1
Kubokawa, K.2
-
95
-
-
25444529171
-
The genomic environment around the Aromatase gene: Evolutionary insights
-
doi:10.1186/1471-2148-5-43
-
Castro LF, Santos MM, Reis-Henriques MA. 2005 The genomic environment around the Aromatase gene: evolutionary insights. BMC Evol. Biol. 5, 43. (doi:10.1186/1471-2148-5-43)
-
(2005)
BMC Evol. Biol
, vol.5
, pp. 43
-
-
Castro, L.F.1
Santos, M.M.2
Reis-Henriques, M.A.3
-
96
-
-
0024417436
-
Evolution of the cytochrome P450 genes
-
doi:10.3109/00498258909043167
-
Nebert DW, Nelson DR, Feyereisen R. 1989 Evolution of the cytochrome P450 genes. Xenobiotica 19, 1149-1160. (doi:10.3109/00498258909043167)
-
(1989)
Xenobiotica
, vol.19
, pp. 1149-1160
-
-
Nebert, D.W.1
Nelson, D.R.2
Feyereisen, R.3
-
97
-
-
28844477866
-
The genesis and evolution of homeobox gene clusters
-
doi:10.1038/nrg1723
-
Garcia-Fernandez J. 2005 The genesis and evolution of homeobox gene clusters. Nat. Rev. Genet. 6, 881-892. (doi:10.1038/nrg1723)
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 881-892
-
-
Garcia-Fernandez, J.1
-
98
-
-
34047262520
-
The NK homeobox gene cluster predates the origin of Hox genes
-
doi:10.1016/j.cub.2007.03.008
-
Larroux C, Fahey B, Degnan SM, Adamski M, Rokhsar DS, Degnan BM. 2007 The NK homeobox gene cluster predates the origin of Hox genes. Curr. Biol. 17, 706-710. (doi:10.1016/j.cub.2007.03.008)
-
(2007)
Curr. Biol
, vol.17
, pp. 706-710
-
-
Larroux, C.1
Fahey, B.2
Degnan, S.M.3
Adamski, M.4
Rokhsar, D.S.5
Degnan, B.M.6
-
99
-
-
33745906973
-
Breakup of a homeobox cluster after genome duplication in teleosts
-
doi:10.1073/pnas.0600341103
-
Mulley JF, Chiu CH, Holland PW. 2006 Breakup of a homeobox cluster after genome duplication in teleosts. Proc. Natl Acad. Sci. USA 103, 10. 369-10. 372. (doi:10.1073/pnas.0600341103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
-
-
Mulley, J.F.1
Chiu, C.H.2
Holland, P.W.3
-
100
-
-
0028874046
-
Dorsoventral axis inversion
-
doi:10.1038/373110c0
-
Lacalli TC. 1995 Dorsoventral axis inversion. Nature 373, 110-111. (doi:10.1038/373110c0)
-
(1995)
Nature
, vol.373
, pp. 110-111
-
-
Lacalli, T.C.1
-
101
-
-
0030021099
-
Dorsoventral axis inversion: A phylogenetic perspective
-
doi:10.1002/bies.950180313
-
Lacalli TC. 1996 Dorsoventral axis inversion: a phylogenetic perspective. BioEssays 18, 251-254. (doi:10.1002/bies.950180313)
-
(1996)
BioEssays
, vol.18
, pp. 251-254
-
-
Lacalli, T.C.1
-
102
-
-
0002664152
-
Considérations générales sur la vertébré
-
Geoffroy de St. Hilaire E. 1822 Considérations générales sur la vertébré. Mém. Mus. Hist. Nat. 9, 89-119)
-
(1822)
Mém. Mus. Hist. Nat
, vol.9
, pp. 89-119
-
-
de Hilaire St., G.E.1
-
103
-
-
33750618212
-
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
-
doi:10.1098/rspb.2006.3537
-
Berney C, Pawlowski J. 2006 A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc. R. Soc. B 273, 1867-1872. (doi:10.1098/rspb.2006.3537)
-
(2006)
Proc. R. Soc. B
, vol.273
, pp. 1867-1872
-
-
Berney, C.1
Pawlowski, J.2
-
104
-
-
77957120002
-
The invasion of the land by plants: When and where?
-
Wellman CH. 2010 The invasion of the land by plants: when and where? New Phytol. 188, 306-309.
-
(2010)
New Phytol
, vol.188
, pp. 306-309
-
-
Wellman, C.H.1
-
105
-
-
0141828151
-
Fragments of the earliest land plants
-
doi:10.1038/nature01884
-
Wellman CH, Osterloff PL, Mohiuddin U. 2003 Fragments of the earliest land plants. Nature 425, 282-285. (doi:10.1038/nature01884)
-
(2003)
Nature
, vol.425
, pp. 282-285
-
-
Wellman, C.H.1
Osterloff, P.L.2
Mohiuddin, U.3
-
106
-
-
84862231047
-
What are the origins and phylogeny of plant hemoglobins
-
doi:10.4161/cib.4.4.15429
-
Vinogradov SN, Hoogewijs D, Arredondo-Peter R. 2011 What are the origins and phylogeny of plant hemoglobins? Commun. Integr. Biol. 4, 443-445. (doi:10.4161/cib.4.4.15429)
-
(2011)
Commun. Integr. Biol
, vol.4
, pp. 443-445
-
-
Vinogradov, S.N.1
Hoogewijs, D.2
Arredondo-Peter, R.3
-
107
-
-
77954347912
-
Molecular evolution of glutamine synthetase II: Phylogenetic evidence of a non-endosymbiotic gene transfer event early in plant evolution
-
doi:10.1186/1471-2148-10-198
-
Ghoshroy S, Binder M, Tartar A, Robertson DL. 2010 Molecular evolution of glutamine synthetase II: phylogenetic evidence of a non-endosymbiotic gene transfer event early in plant evolution. BMC Evol. Biol. 10, 198. (doi:10.1186/1471-2148-10-198)
-
(2010)
BMC Evol. Biol
, vol.10
, pp. 198
-
-
Ghoshroy, S.1
Binder, M.2
Tartar, A.3
Robertson, D.L.4
-
108
-
-
63349084133
-
A horizontal gene transfer at the origin of phenylpropanoid metabolism: A key adaptation of plants to land
-
doi:10.1186/1745- 6150-4-7
-
Emiliani G, Fondi M, Fani R, Gribaldo S. 2009 A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land. Biol. Direct. 4, 7. (doi:10.1186/1745- 6150-4-7)
-
(2009)
Biol. Direct
, vol.4
, pp. 7
-
-
Emiliani, G.1
Fondi, M.2
Fani, R.3
Gribaldo, S.4
-
109
-
-
76549093442
-
Phenylpropanoid biosynthesis
-
doi:10.1093/mp/ssp106
-
Vogt T. 2010 Phenylpropanoid biosynthesis. Mol. Plant 3, 2-20. (doi:10.1093/mp/ssp106)
-
(2010)
Mol. Plant
, vol.3
, pp. 2-20
-
-
Vogt, T.1
-
110
-
-
0030975251
-
Regulation of the cinnamate 4-hydroxylase (CYP73A1) in Jerusalem artichoke tubers in response to wounding and chemical treatments
-
Batard Y, Schalk M, Pierrel MA, Zimmerlin A, Durst F, Werck-Reichhart D. 1997 Regulation of the cinnamate 4-hydroxylase (CYP73A1) in Jerusalem artichoke tubers in response to wounding and chemical treatments. Plant Physiol. 113, 951-959)
-
(1997)
Plant Physiol
, vol.113
, pp. 951-959
-
-
Batard, Y.1
Schalk, M.2
Pierrel, M.A.3
Zimmerlin, A.4
Durst, F.5
Werck-Reichhart, D.6
-
111
-
-
37849051515
-
Intermediary metabolism in sea urchin: The first inferences from the genome sequence
-
doi:10.1016/j.ydbio.2006.08.030
-
Goel M, Mushegian A. 2006 Intermediary metabolism in sea urchin: the first inferences from the genome sequence. Dev. Biol. 300, 282-292. (doi:10.1016/j.ydbio.2006.08.030)
-
(2006)
Dev. Biol
, vol.300
, pp. 282-292
-
-
Goel, M.1
Mushegian, A.2
-
112
-
-
0037216584
-
Cinnamate:Coenzyme A ligase from the filamentous bacterium Streptomyces coelicolor A3(2)
-
doi:10.1128/JB. 185.1.20-27.2003
-
Kaneko M, Ohnishi Y, Horinouchi S. 2003 Cinnamate:coenzyme A ligase from the filamentous bacterium Streptomyces coelicolor A3(2). J. Bacteriol. 185, 20-27. (doi:10.1128/JB. 185.1.20-27.2003)
-
(2003)
J. Bacteriol
, vol.185
, pp. 20-27
-
-
Kaneko, M.1
Ohnishi, Y.2
Horinouchi, S.3
-
113
-
-
34247275930
-
Doushantuo embryos preserved inside diapause egg cysts
-
doi:10.1038/ nature05682
-
Yin L, Zhu M, Knoll AH, Yuan X, Zhang J, Hu J. 2007 Doushantuo embryos preserved inside diapause egg cysts. Nature 446, 661-663. (doi:10.1038/ nature05682)
-
(2007)
Nature
, vol.446
, pp. 661-663
-
-
Yin, L.1
Zhu, M.2
Knoll, A.H.3
Yuan, X.4
Zhang, J.5
Hu, J.6
-
114
-
-
79956030187
-
A late origin of the extant eukaryotic diversity: Divergence time estimates using rare genomic changes
-
doi:10.1186/1745-6150-6-26
-
Chernikova D, Motamedi S, Csuros M, Koonin EV, Rogozin IB. 2011 A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes. Biol. Direct. 6, 26. (doi:10.1186/1745-6150-6-26)
-
(2011)
Biol. Direct
, vol.6
, pp. 26
-
-
Chernikova, D.1
Motamedi, S.2
Csuros, M.3
Koonin, E.V.4
Rogozin, I.B.5
-
115
-
-
0030589679
-
Structure and mapping of the human lanosterol 14alpha-demethylase gene (CYP51) encoding the cytochrome P450 involved in cholesterol biosynthesis; comparison of exon/intron organization with other mammalian and fungal CYP genes
-
doi:10.1006/geno. 1996.0640
-
Rozman D, Stromstedt M, Tsui LC, Scherer SW, Waterman MR. 1996 Structure and mapping of the human lanosterol 14alpha-demethylase gene (CYP51) encoding the cytochrome P450 involved in cholesterol biosynthesis; comparison of exon/intron organization with other mammalian and fungal CYP genes. Genomics 38, 371-381. (doi:10.1006/geno. 1996.0640)
-
(1996)
Genomics
, vol.38
, pp. 371-381
-
-
Rozman, D.1
Stromstedt, M.2
Tsui, L.C.3
Scherer, S.W.4
Waterman, M.R.5
-
116
-
-
0032571427
-
Molecular diversity of sterol 14alpha-demethylase substrates in plants, fungi and humans
-
doi:10.1016/S0014-5793(98)00247-6
-
Lamb DC, Kelly DE, Kelly SL. 1998 Molecular diversity of sterol 14alpha-demethylase substrates in plants, fungi and humans. FEBS Lett. 425, 263-265. (doi:10.1016/S0014-5793(98)00247-6)
-
(1998)
FEBS Lett
, vol.425
, pp. 263-265
-
-
Lamb, D.C.1
Kelly, D.E.2
Kelly, S.L.3
|