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Volumn 22, Issue 11, 2012, Pages 2270-2277

Finished bacterial genomes from shotgun sequence data

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BACTERIAL GENE; BACTERIUM; COST; GENE SEQUENCE; GENOME; LABORATORY; NONHUMAN; PRIORITY JOURNAL;

EID: 84868327508     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.141515.112     Document Type: Article
Times cited : (178)

References (28)
  • 6
    • 39049156065 scopus 로고    scopus 로고
    • Short read fragment assembly of bacterial genomes
    • Chaisson MJ, Pevzner PA. 2008. Short read fragment assembly of bacterial genomes. Genome Res 18:324-330.
    • (2008) Genome Res , vol.18 , pp. 324-330
    • Chaisson, M.J.1    Pevzner, P.A.2
  • 7
    • 80051839847 scopus 로고    scopus 로고
    • Meraculous: De novo genome assembly with short paired-end reads
    • doi:10.1371/journal.pone.0023501
    • Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. 2011. Meraculous: De novo genome assembly with short paired-end reads. PLoS ONE 6: e23501. doi:10.1371/journal.pone.0023501.
    • (2011) PLoS ONE , vol.6
    • Chapman, J.A.1    Ho, I.2    Sunkara, S.3    Luo, S.4    Schroth, G.P.5    Rokhsar, D.S.6
  • 9
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 10
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 15
    • 84855495004 scopus 로고    scopus 로고
    • Gene fragmentation in bacterial draft genomes: Extent, consequences and mitigation
    • doi:10.1186/1471-2164-13-14
    • Klassen JL, Currie CR. 2012. Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation. BMC Genomics 13:14. doi:10.1186/1471-2164-13-14.
    • (2012) BMC Genomics , vol.13 , pp. 14
    • Klassen, J.L.1    Currie, C.R.2
  • 16
    • 0032873141 scopus 로고    scopus 로고
    • Genomes OnLine Database (GOLD 1.0): A monitor of complete and ongoing genome projects world-wide
    • Kyrpides NC. 1999. Genomes OnLine Database (GOLD 1.0): A monitor of complete and ongoing genome projects world-wide. Bioinformatics 15:773-774.
    • (1999) Bioinformatics , vol.15 , pp. 773-774
    • Kyrpides, N.C.1
  • 20
    • 77956203114 scopus 로고    scopus 로고
    • De novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads
    • doi:10.1371/journal.pone.0010922
    • Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, et al. 2010. De novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. PLoS ONE 5: e10922. doi:10.1371/journal. pone.0010922.
    • (2010) PLoS ONE , vol.5
    • Nagarajan, H.1    Butler, J.E.2    Klimes, A.3    Qiu, Y.4    Zengler, K.5    Ward, J.6    Young, N.D.7    Methé, B.A.8    Palsson, B.Ø.9    Lovley, D.R.10
  • 21
    • 80054924581 scopus 로고    scopus 로고
    • Bacterial epidemiology and biology\-lessons from genome sequencing
    • doi:10.1186/gb-2011-12-10-230
    • Parkhill J, Wren BW. 2011. Bacterial epidemiology and biology\-lessons from genome sequencing. Genome Biol 12:230. doi:10.1186/gb-2011-12-10-230.
    • (2011) Genome Biol , vol.12 , pp. 230
    • Parkhill, J.1    Wren, B.W.2
  • 22
    • 0035859921 scopus 로고    scopus 로고
    • An Eulerian path approach to DNA fragment assembly
    • Pevzner PA, Tang H, Waterman MS. 2001. An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci 98:9748-9753.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 9748-9753
    • Pevzner, P.A.1    Tang, H.2    Waterman, M.S.3
  • 25
    • 84857838310 scopus 로고    scopus 로고
    • Efficient de novo assembly of large genomes using compressed data structures
    • Simpson JT, Durbin R. 2012. Efficient de novo assembly of large genomes using compressed data structures. Genome Res 22:549-556.
    • (2012) Genome Res , vol.22 , pp. 549-556
    • Simpson, J.T.1    Durbin, R.2
  • 28
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.