-
1
-
-
84855461642
-
GenomeWeb
-
GenomeWeb. , http://www.genomeweb.com/
-
-
-
-
2
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.
-
Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36:e10510.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
3
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. elegans.
-
10.1038/nmeth.1179, 18204455
-
Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER. Whole-genome sequencing and variant discovery in C. elegans. Nat Methods 2008, 5:183-188. 10.1038/nmeth.1179, 18204455.
-
(2008)
Nat Methods
, vol.5
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Fewell, G.5
Barnett, D.6
Fox, P.7
Glasscock, J.I.8
Hickenbotham, M.9
Huang, W.10
Magrini, V.J.11
Richt, R.J.12
Sander, S.N.13
Stewart, D.A.14
Stromberg, M.15
Tsung, E.F.16
Wylie, T.17
Schedl, T.18
Wilson, R.K.19
Mardis, E.R.20
more..
-
4
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries.
-
Aird D, Ross MG, Chen W-S, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 2011, 12:R1810.
-
(2011)
Genome Biol
, vol.12
-
-
Aird, D.1
Ross, M.G.2
Chen, W.-.S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.B.7
Nusbaum, C.8
Gnirke, A.9
-
5
-
-
63949083912
-
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes.
-
10.1038/nmeth.1311, 2664327, 19287394
-
Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods 2009, 6:291-295. 10.1038/nmeth.1311, 2664327, 19287394.
-
(2009)
Nat Methods
, vol.6
, pp. 291-295
-
-
Kozarewa, I.1
Ning, Z.2
Quail, M.A.3
Sanders, M.J.4
Berriman, M.5
Turner, D.J.6
-
6
-
-
80052226692
-
Sequence-specific error profile of Illumina sequencers.
-
10.1093/nar/gkr344, 3141275, 21576222
-
Nakamura K, Oshima T, Morimoto T, Ikeda S, Yoshikawa H, Shiwa Y, Ishikawa S, Linak MC, Hirai A, Takahashi H, Altaf-Ul-Amin M, Ogasawara N, Kanaya S. Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res 2011, 39:e90. 10.1093/nar/gkr344, 3141275, 21576222.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Nakamura, K.1
Oshima, T.2
Morimoto, T.3
Ikeda, S.4
Yoshikawa, H.5
Shiwa, Y.6
Ishikawa, S.7
Linak, M.C.8
Hirai, A.9
Takahashi, H.10
Altaf-Ul-Amin, M.11
Ogasawara, N.12
Kanaya, S.13
-
7
-
-
67650074197
-
Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing.
-
10.1101/gr.089151.108, 2704438, 19439514
-
Qu W, Hashimoto S-I, Morishita S. Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing. Genome Res 2009, 19:1309-1315. 10.1101/gr.089151.108, 2704438, 19439514.
-
(2009)
Genome Res
, vol.19
, pp. 1309-1315
-
-
Qu, W.1
Hashimoto, S.-.I.2
Morishita, S.3
-
8
-
-
58149105394
-
Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes.
-
10.1111/j.1365-313X.2008.03665.x, 18764921
-
Dohm JC, Lange C, Reinhardt R, Himmelbauer H. Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant J 2009, 57:14-26. 10.1111/j.1365-313X.2008.03665.x, 18764921.
-
(2009)
Plant J
, vol.57
, pp. 14-26
-
-
Dohm, J.C.1
Lange, C.2
Reinhardt, R.3
Himmelbauer, H.4
-
9
-
-
84855423103
-
TAIR
-
TAIR. , http://arabidopsis.org/
-
-
-
-
10
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform.
-
10.1093/bioinformatics/btp324, 2705234, 19451168
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
11
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R2510.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
12
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data.
-
10.1038/nrg2986, 21587300
-
Nielsen R, Paul JS, Albrechtsen A, Song YS. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet 2011, 12:443-451. 10.1038/nrg2986, 21587300.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
Paul, J.S.2
Albrechtsen, A.3
Song, Y.S.4
-
13
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
-
10.1038/35048692, 11130711, Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815. 10.1038/35048692, 11130711, Arabidopsis Genome Initiative.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
14
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry.
-
10.1038/nature07517, 2581791, 18987734
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 2008, 456:53-59. 10.1038/nature07517, 2581791, 18987734.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
Evers, D.J.8
Barnes, C.L.9
Bignell, H.R.10
Boutell, J.M.11
Bryant, J.12
Carter, R.J.13
Keira Cheetham, R.14
Cox, A.J.15
Ellis, D.J.16
Flatbush, M.R.17
Gormley, N.A.18
Humphray, S.J.19
Irving, L.J.20
Karbelashvili, M.S.21
Kirk, S.M.22
Li, H.23
Liu, X.24
Maisinger, K.S.25
Murray, L.J.26
Obradovic, B.27
Ost, T.28
Parkinson, M.L.29
Pratt, M.R.30
more..
-
15
-
-
77953742658
-
The Perl Programming Language
-
The Perl Programming Language. , http://www.perl.org/
-
-
-
-
16
-
-
80055091440
-
The R Project for Statistical Computing
-
The R Project for Statistical Computing. , http://www.r-project.org/
-
-
-
-
17
-
-
77949512406
-
Tablet--next generation sequence assembly visualization.
-
10.1093/bioinformatics/btp666, 2815658, 19965881
-
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. Tablet--next generation sequence assembly visualization. Bioinformatics 2010, 26:401-402. 10.1093/bioinformatics/btp666, 2815658, 19965881.
-
(2010)
Bioinformatics
, vol.26
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
|