Analysis of endocrine disruption in southern California coastal fish using an aquatic multispecies microarray

Environmental Health Perspectives

Volumn 117, Issue 2, 2009, Pages 223-230

  Baker, Michael E ^a   Ruggeri, Barbara ^b,c   Sprague, L James ^b   Eckhardt Ludka, Colleen ^b   Lapira, Jennifer ^b   Wick, Ivan ^b   Soverchia, Laura ^b,c   Ubaldi, Massimo ^c   Polzonetti Magni, Alberta Maria ^c   Vidal Dorsch, Doris ^d   Bay, Steven ^d   Gully, Joseph R ^e   Reyes, Jesus A ^f   Kelley, Kevin M ^f   Schlenk, Daniel ^g   Breen, Ellen C ^h   Šášik, Roman ^b,h   Hardiman, Gary ^a,b  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CAMERINO   (Italy)

^d SOUTHERN CALIFORNIA COASTAL WATER RESEARCH PROJECT   (United States)

^e Sanitation Districts of Los Angeles County   (United States)

^f CALIFORNIA STATE UNIVERSITY   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Danio rerio; Endocrine disruptors; Flatfish; Hornyhead turbot; Microarray; Multispecies array; Nonylphenol; Pleuronichthys verticalis; Xenobiotics; Xenoestrogens; Zebrafish

Indexed keywords

4 NONYLPHENOL; ENDOCRINE DISRUPTOR; ESTRADIOL; MESSENGER RNA; SEX HORMONE; THYROID HORMONE;

ADRENAL GLAND; ANIMAL TISSUE; ARTICLE; COASTAL WATERS; ECOTOXICITY; ENVIRONMENTAL EXPOSURE; ENVIRONMENTAL IMPACT; ENVIRONMENTAL MONITORING; FISH GENETICS; GENE EXPRESSION PROFILING; GENE FUNCTION; HORMONE RELEASE; LIVER PARENCHYMA; MALE; MARINE SPECIES; MICROARRAY ANALYSIS; MOLECULAR PHYLOGENY; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEA POLLUTION; TURBOT; UNITED STATES; XENOBIOTIC METABOLISM; ZEBRA FISH;

DANIO RERIO; PLEURONECTIFORMES; PLEURONICHTHYS VERTICALIS; SCOPHTHALMIDAE;

EID: 60749134227     PISSN: 00916765     EISSN: 15529924     Source Type: Journal    
DOI: 10.1289/ehp.11627     Document Type: Article

References (58)

1. Ahel M, Conrad J, Giger W. 1987. Persistent organic chemicals in sewage effluents. 3. Determinations of nonylphenoxy carboxylic acids by high-resolution gas chromatography/mass spectrometry and high-performance liquid chromatography. Environ Sci Technol 21:697-703.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
3. Atanasov AG, Nashev LG, Tam S, Baker ME, Odermatt A. 2005. Organotins disrupt the 11beta-hydroxysteroid dehydrogenase type 2-dependent local inactivation of glucocorticoids. Environ Health Perspect 113:1600-1606.
4. Baker ME. 2001. Adrenal and sex steroid receptor evolution: environmental implications. J Mol Endocrinol 26:119-125.
5. Baker ME. 2004. Evolutionary analysis of 11beta-hydroxysteroid dehydrogenase-type 1, -type 2, -type 3 and 17beta-hydroxy-steroid dehydrogenase-type 2 in fish. FEBS Lett 574:167-170.
6. Bell EM, Hertz-Picciotto I, Beaumont JJ. 2001. A case-control study of pesticides and fetal death due to congenital anomalies. Epidemiology 12:148-156.
7. Benson WH, Di Giulio RT. 2008. Genomic Approaches for Cross-Species Extrapolation in Toxicology. Boca Raton, FL:CRC Press.
8. Bight Field Sampling and Logistics Committee. 2003. Field Operations Manual. Westminster, CA:Commission of Southern California Coastal Water Research Project.
9. Blum JL, Nyagode BA, James MO, Denslow ND. 2008. Effects of the pesticide methoxychlor on gene expression in the liver and testes of the male largemouth bass (Micropterus salmoides). Aquat Toxicol 86:459-469.
10. Boas M, Feldt-Rassmussen U, Skakkebaek NE, Main KM. 2006. Environmental chemicals and thyroid function. Eur J Endocrinol 154:599-611.
11. Choi CY, Habibi HR. 2003. Molecular cloning of estrogen receptor alpha and expression pattern of estrogen receptor subtypes in male and female goldfish. Mol Cell Endocrinol 204:169-177.
12. Cole SW, Galic Z, Zack JA. 2003. Controlling false-negative errors in microarray differential expression analysis: a PRIM approach. Bioinformatics 19:1808-1816.
13. Coleman R. 2004. Fish Classification: The Classes. Available: http://cichlidresearch.com/fish_html/allfish.html [accessed 8 December 2008].
14. Deng X, Rempel MA, Armstrong J, Schlenk D. 2007. Seasonal evaluation of reproductive status and exposure to environmental estrogens in hornyhead turbot at the municipal wastewater outfall of Orange County, CA. Environ Toxicol 22:464-471.
15. European Bioinformatics Institute. 2008. ArrayExpress Database. Available: http://www.ebi.ac.uk/microarray-as/ae/ [accessed 8 December 2008].
16. Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8(3):175-185.
17. Giger W, Brunner PH, Schaffner C. 1984. 4-Nonylphenol in sewage sludge: accumulation of toxic metabolites from nonionic surfactants. Science 4662:623-625.
18. Grun F, Blumberg B. 2006. Environmental obesogens: organotins and endocrine disruption via nuclear receptor signaling. Endocrinology 147:S50-S855.
19. Hardiman G. 2004. Microarray platforms-comparisons and contrasts. Pharmacogenomics 5:487-502.
20. Hardiman G, Carmen A. 2006. DNA biochips - past, present and future; an overview. In: Biochips as Pathways to Discovery (Carmen A, Hardiman G, eds.). New York:Taylor & Francis, 1-13.
21. Hardiman G, Tran Y, Bacon K, Clover R, Reardon B, WisotzkeyR, et al. 2003. C. elegans gene expression analysis using microarrays of covalently attached 50mer oligodeoxyribonucleotides. In: Microarray Methods and Applications (Hardiman G, ed). Eagleville, PA:DNA Press, 205-230.
22. Hasselberg L, Meier S, Svardal A, Hegelund T, Celander MC. 2004. Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua). Aquat Toxicol 67:303-313.
23. Hegelund T, Celander MC. 2003. Hepatic versus extrahepatic expression of CYP3A30 and CYP3A56 in adult killifish (Fundulus heteroclitus). Aquat Toxicol 64:277-291.
24. Helfman GS, Collette BB, Facey DE. 1997. The Diversity of Fishes. Malden, MA:Blackwell Science.
25. Herman-Giddens ME, Slora EJ, Wasserman RC, Bourdony CJ, Bhapkar MV, Koch GG, et al. 1997. Secondary sexual characteristics and menses in young girls seen in office practice: a study from the pediatric research in office settings network. Pediatrics 99:505-512.
26. International Programme on Chemical Safety. 2002. Global Assessment of the State-of-the-Science of Endocrine Disruptors. Available: http://www.who.int/ipcs/publications/new_issues/endocrine_disruptors/en/ [accessed 8 December 2008].
27. Inui M, Adachi T, Takenaka S, Inui H, Nakazawa M, Ueda M, et al. 2003. Effect of UV screens and preservatives on vitellogenin and choriogenin production in male medaka (Oryzias latipes). Toxicology 194:43-50.
28. Islinger M, Willimski D, Volkl A, Braunbeck T. 2003. Effects of 17α-ethinylestradiol on the expression of three estrogen-responsive genes and cellular ultrastructure of liver and testes in male zebrafish. Aquat Toxicol 62:85-103.
29. Jacobson JL, Jacobson SW. 1996. Intellectual impairment in children exposed to polychlorinated biphenyls in utero. N Engl J Med 335:783-789.
30. Kelley KM, Haigwood JT, Perez M, Galima MM. 2001. Serum insulin-like growth factor-binding proteins (IGFBPs) as markers for anabolic/ catabolic condition in fishes. Comp Biochem Physiol B Biochem Mol Biol 129:229-236.
31. Kelley KM, Schmidt KE, Berg L, Sak K, Galima MM, Gillespie C, et al. 2002. Comparative endocrinology of the insulin-like growth factor-binding protein. J Endocrinol 175:3-18.
32. Kuiper GG, Carlsson B, Grandien K, Enmark E, Haggblad J, Nilsson S, et al. 1997. Comparison of the ligand binding specificity and transcript tissue distribution of estrogen receptors alpha and beta. Endocrinology 138:863-870.
33. Li X, He Z, Zhou J. 2005. Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation. Nucleic Acids Res 33:6114-6123.
34. Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts C, et al. 1998. Drug target validation and identification of secondary drug target effects using DNA microarrays. Nat Med 4:1293-1301.
35. Masuyama H, Hiramatsu Y, Kunitomi M, Kudo T, McDonald PN. 2000. Endocrine disrupting chemicals, phthalic acid and nonylphenol, activate pregnane X receptor-mediated transcription. Mol Endocrinol 14:421-428.
36. Masuyama H, Inoshita H, Hiramatsu Y, Kudo T. 2002. Ligands have various potential effects on the degradation of pregnane X receptor by proteasome. Endocrinology 143:55-61.
37. Meucci V, Arukwe A. 2006. The xenoestrogen 4-nonylphenol modulates hepatic gene expression of pregnane X receptor, aryl hydrocarbon receptor, CYP3A and CYP1A1 in juvenile Atlantic salmon (Salmo salar). Comp Biochem Physiol C Toxicol Pharmacol 142:142-150.
38. Moreau A, Vilarem MJ, Maurel P, Pascussi JM. 2008. Xenoreceptors CAR and PXR activation and consequences on lipid metabolism, glucose homeostasis, and inflammatory response. Mol Pharm 5:35-41.
39. National Center for Biotechnology Information. 2008. GenBank Overview. Available: http://www.ncbi.nlm.nih.gov/Genbank/index.html [accessed 8 December 2008].
40. Naylor CG, Mieure JP, Adams WJ, Weeks JA, Castaldi FJ, Ogle LD, et al. 1992. Alkylphenol ethoxylates in the environment. J Am Oil Chem Soc 69:695-703.
41. Nielsen HB, Wernersson R, Knudsen S. 2003. Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays. Nucleic Acids Res 13:3491-3496.
42. Nishizawa H, Morita M, Sugimoto M, Imanishi S, Manabe N. 2005. Effects of in utero exposure to bisphenol A on mRNA expression of arylhydrocarbon and retinoid receptors in murine embryos. J Reprod Dev 51:315-324.
43. Ogawa S, Lozach J, Jepsen K, Sawka-Verhelle D, Perissi V, Šášik R, et al. 2004. A nuclear receptor corepressor transcriptional checkpoint controlling activator protein 1-dependent gene networks required for macrophage activation. Proc Natl Acad Sci USA 101:14461-14466.
44. Pajor AM, Stegeman JJ, Thomas P, Woodin BR. 1990. Feminization of the hepatic microsomal cytochrome P-450 system in brook trout by estradiol, testosterone, and pituitary factors. J Exp Zool 253:51-60.
45. Rempel MA, Reyes J, Steinert S, Hwang W, Armstrong J, Sakamoto K, et al. 2006. Evaluation of relationships between reproductive metrics, gender and vitellogenin expression in demersal flatfish collected near the municipal wastewater outfall of Orange County, California, USA. Aquat Toxicol 77:241-249.
46. Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (Krawetz S, Misener S, eds). Totowa, NJ:Humana Press, 365-386.
47. Šášik R, Woelk CH, Corbeil J. 2004. Microarray truths and consequences. J Mol Endocrinol 33:1-9.
48. Sharpe R, Skakkebaek N. 1993. Are oestrogens involved in falling sperm count and disorders of the male reproductive tract? Lancet 341:1392-1395.
49. Soto AM, Justicia H, Wray JW, Sonnenschein C. 1991.p-Nonylphenol: an estrogenic xenobiotic released from "modified" polystyrene. Environ Health Perspect 92:167-173.
50. Soverchia L, Ruggeri B, Palermo F, Mosconi G, Cardinaletti G, Scortichini G, et al. 2006. Modulation of vitellogenin synthesis through estrogen receptor beta-1 in goldfish (Carassius auratus) juveniles exposed to 17-beta estradiol and nonylphenol. Toxicol Appl Pharmacol 209:236-243.
51. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
52. Tyler CR, Jobling S, Sumpter JP. 1998. Endocrine disruption in wildlife: a critical review of the evidence. Crit Rev Toxicol 28:319-361.
53. Vetillard A, Bailhache T. 2006. Effects of 4-n-nonylphenol and tamoxifen on salmon gonadotropin-releasing hormone, estrogen receptor, and vitellogenin gene expression in juvenile rainbow trout. Toxicol Sci 92:537-544.
54. Vilo J, Kivinen K. 2001. Regulatory sequence analysis: application to the interpretation of gene expression. Eur Neuropsychopharmacol 11:399-411.
55. Wernersson R, Nielsen HB. 2005. OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes. Nucleic Acids Res 33(Web server issue): W611-W615.
56. Williams TD, Gensberg K, Minchin SD, Chipman JK. 2003. A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquat Toxicol 65:141-157.
57. Xie W, Barwick JL, Simon CM, Pierce AM, Safe S, Blumberg B, et al. 2000. Reciprocal activation of xenobiotic response genes by nuclear receptors SXR/PXR and CAR. Genes Dev 14:3014-3023.
58. Zhou T, John-Alder HB, Weis JS, Weis P. 2000. Endocrine disruption: thyroid dysfunction in mummichogs (Fundulus heteroclitus) from a polluted habitat. Mar Environ Res 50:393-397.