메뉴 건너뛰기




Volumn 11, Issue 1, 2014, Pages 113-134

Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE IMMUNITY; CONVERGENT SYSTEMS; GENETIC ELEMENTS; PALINDROMIC; RESISTANCE MECHANISMS; SYSTEM COMPONENTS; THERAPEUTIC APPLICATION; TREE OF LIFE;

EID: 84896690656     PISSN: 15710645     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plrev.2013.11.002     Document Type: Review
Times cited : (18)

References (142)
  • 1
    • 73149087453 scopus 로고    scopus 로고
    • Transcription profile of Thermus thermophilus CRISPR systems after phage infection
    • Agari Y., Sakamoto K., Tamakoshi M., Oshima T., Kuramitsu S., et al. Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol 2010, 395:270-281.
    • (2010) J Mol Biol , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5
  • 2
    • 58049196894 scopus 로고    scopus 로고
    • RNA-based viral immunity initiated by the Dicer family of host immune receptors
    • Aliyari R., Ding S. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunol Rev 2009, 227:176-188.
    • (2009) Immunol Rev , vol.227 , pp. 176-188
    • Aliyari, R.1    Ding, S.2
  • 3
    • 70449671099 scopus 로고    scopus 로고
    • Plant responses against invasive nucleic acids: RNA silencing and its suppression by plant viral pathogens
    • Alvarado V., Scholthof H. Plant responses against invasive nucleic acids: RNA silencing and its suppression by plant viral pathogens. Semin Cell Dev Biol 2009, 20:1032-1040.
    • (2009) Semin Cell Dev Biol , vol.20 , pp. 1032-1040
    • Alvarado, V.1    Scholthof, H.2
  • 4
    • 84896696725 scopus 로고    scopus 로고
    • Roles of CRISPR in regulation of physiological processes
    • Springer, Berlin Heidelberg, R. Barrangou, J. van der Oost (Eds.)
    • Amitai G., Sorek R. Roles of CRISPR in regulation of physiological processes. CRISPR-Cas systems 2013, 251-266. Springer, Berlin Heidelberg. R. Barrangou, J. van der Oost (Eds.).
    • (2013) CRISPR-Cas systems , pp. 251-266
    • Amitai, G.1    Sorek, R.2
  • 6
    • 66349118913 scopus 로고    scopus 로고
    • Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
    • Assis R., Kondrashov A. Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution. Proc Natl Acad Sci USA 2009, 106:7079-7082.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7079-7082
    • Assis, R.1    Kondrashov, A.2
  • 7
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R., Fremaux C., Deveau H., Richards M., Boyaval P., et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007, 315:1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5
  • 8
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E., Caudy A., Hammond S., Hannon G. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 2001, 409:363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.2    Hammond, S.3    Hannon, G.4
  • 9
    • 36949016056 scopus 로고    scopus 로고
    • Computational analysis of mouse piRNA sequence and biogenesis
    • Betel D., Sheridan R., Marks D., Sander C. Computational analysis of mouse piRNA sequence and biogenesis. PLoS Comput Biol 2007, 3:e222.
    • (2007) PLoS Comput Biol , vol.3
    • Betel, D.1    Sheridan, R.2    Marks, D.3    Sander, C.4
  • 10
    • 0037718347 scopus 로고    scopus 로고
    • Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance
    • Boutet S., Vazquez F., Liu J., Béclin C., Fagard M., et al. Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Curr Biol 2003, 13:843-848.
    • (2003) Curr Biol , vol.13 , pp. 843-848
    • Boutet, S.1    Vazquez, F.2    Liu, J.3    Béclin, C.4    Fagard, M.5
  • 11
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J., Aravin A., Stark A., Dus M., Kellis M., Sachidanandam R., et al. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 2007, 128:1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6
  • 12
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • Brouns S., Jore M., Lundgren M., Westra E., Slijkhuis R., et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008, 321:960-964.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.1    Jore, M.2    Lundgren, M.3    Westra, E.4    Slijkhuis, R.5
  • 13
    • 84856389509 scopus 로고    scopus 로고
    • RNA-based therapeutics: current progress and future prospects
    • Burnett J., Rossi J. RNA-based therapeutics: current progress and future prospects. Chem Biol 2012, 19:60-71.
    • (2012) Chem Biol , vol.19 , pp. 60-71
    • Burnett, J.1    Rossi, J.2
  • 14
    • 0036664838 scopus 로고    scopus 로고
    • Inhibition of viral gene expression and replication in mosquito cells by dsRNA-triggered RNA interference
    • Caplen N. Inhibition of viral gene expression and replication in mosquito cells by dsRNA-triggered RNA interference. Mol Ther 2002, 6:243-251.
    • (2002) Mol Ther , vol.6 , pp. 243-251
    • Caplen, N.1
  • 15
    • 84866983297 scopus 로고    scopus 로고
    • A CRISPR approach to gene targeting
    • Carroll D. A CRISPR approach to gene targeting. Mol Ther 2009, 20:1658-1660.
    • (2009) Mol Ther , vol.20 , pp. 1658-1660
    • Carroll, D.1
  • 16
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J., Wang R., Li H., Terns R., Terns M. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 2008, 22:3489-3496.
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.4    Terns, M.5
  • 17
    • 0036792769 scopus 로고    scopus 로고
    • Fragile X-related protein and VIG associate with the RNA interference machinery
    • Caudy A., Myers M., Hannon G., Hammond S. Fragile X-related protein and VIG associate with the RNA interference machinery. Genes Dev 2002, 16:2491-2496.
    • (2002) Genes Dev , vol.16 , pp. 2491-2496
    • Caudy, A.1    Myers, M.2    Hannon, G.3    Hammond, S.4
  • 18
    • 0141843655 scopus 로고    scopus 로고
    • A micrococcal nuclease homologue in RNAi effector complexes
    • Caudy A., Ketting R., Hammond S., Denli A., Bathoorn A., Tops B., et al. A micrococcal nuclease homologue in RNAi effector complexes. Nature 2003, 425:411-414.
    • (2003) Nature , vol.425 , pp. 411-414
    • Caudy, A.1    Ketting, R.2    Hammond, S.3    Denli, A.4    Bathoorn, A.5    Tops, B.6
  • 19
    • 3142703151 scopus 로고    scopus 로고
    • Induction and biochemical purification of RNA-induced silencing complex from drosophila S2 cells
    • Humana Press
    • Caudy A., Hannon G. Induction and biochemical purification of RNA-induced silencing complex from drosophila S2 cells. RNA interference, editing, and modification 2004, vol. 265:59-72. Humana Press.
    • (2004) RNA interference, editing, and modification , vol.265 , pp. 59-72
    • Caudy, A.1    Hannon, G.2
  • 20
    • 84876409836 scopus 로고    scopus 로고
    • Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos
    • Chang N., Sun C., Gao L., Zhu D., Xu X., Zhu X., et al. Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos. Cell Res 2013, 23:465-472.
    • (2013) Cell Res , vol.23 , pp. 465-472
    • Chang, N.1    Sun, C.2    Gao, L.3    Zhu, D.4    Xu, X.5    Zhu, X.6
  • 21
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004, 303:2022-2025.
    • (2004) Science , vol.303 , pp. 2022-2025
    • Chen, X.1
  • 22
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K., Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet 2007, 8:93-103.
    • (2007) Nat Rev Genet , vol.8 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 23
    • 84863491748 scopus 로고    scopus 로고
    • Multi-scale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin
    • Childs L., Held N., Young M., Whitaker R., Weitz J. Multi-scale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin. Evolution 2012, 66:2015-2029.
    • (2012) Evolution , vol.66 , pp. 2015-2029
    • Childs, L.1    Held, N.2    Young, M.3    Whitaker, R.4    Weitz, J.5
  • 24
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong L., Ran F., Cox D., Lin S., Barretto R., Habib N., et al. Multiplex genome engineering using CRISPR/Cas systems. Science 2013, 339:819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6
  • 25
    • 77649185063 scopus 로고    scopus 로고
    • Evolution of immune systems from self/not self to danger to artificial immune systems (AIS)
    • Cooper E.L. Evolution of immune systems from self/not self to danger to artificial immune systems (AIS). Phys Life Rev 2010, 7:55-78.
    • (2010) Phys Life Rev , vol.7 , pp. 55-78
    • Cooper, E.L.1
  • 26
    • 77649178836 scopus 로고    scopus 로고
    • Self/not self, innate immunity, danger, cancer potential
    • Cooper E.L. Self/not self, innate immunity, danger, cancer potential. Phys Life Rev 2010, 7:85-86.
    • (2010) Phys Life Rev , vol.7 , pp. 85-86
    • Cooper, E.L.1
  • 27
    • 84894571666 scopus 로고    scopus 로고
    • Adaptive immunity from prokaryotes to eukaryotes: broader inclusions due to less exclusivity?
    • InTech, J. Kanwar (Ed.)
    • Cooper E.L. Adaptive immunity from prokaryotes to eukaryotes: broader inclusions due to less exclusivity?. Recent advances in immunology to target cancer, inflammation and infections 2012, 495-520. InTech. J. Kanwar (Ed.).
    • (2012) Recent advances in immunology to target cancer, inflammation and infections , pp. 495-520
    • Cooper, E.L.1
  • 29
    • 0036010595 scopus 로고    scopus 로고
    • Digging for innate immunity since Darwin and Metchnikoff
    • Cooper E.L., Kauschke E., Cossarizza A. Digging for innate immunity since Darwin and Metchnikoff. BioEssays 2002, 24:319-333.
    • (2002) BioEssays , vol.24 , pp. 319-333
    • Cooper, E.L.1    Kauschke, E.2    Cossarizza, A.3
  • 31
    • 0035901497 scopus 로고    scopus 로고
    • SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis
    • Dalmay T., Horsefield R., Braunstein T., Baulcombe D. SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO J 2001, 20:2069-2078.
    • (2001) EMBO J , vol.20 , pp. 2069-2078
    • Dalmay, T.1    Horsefield, R.2    Braunstein, T.3    Baulcombe, D.4
  • 32
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • Datsenko K., Pougach K., Tikhonov A., Wanner B., Severinov K., et al. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 2012, 3:945.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.4    Severinov, K.5
  • 35
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva E., Chylinski K., Sharma C., Gonzales K., Chao Y., et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011, 471:602-607.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.3    Gonzales, K.4    Chao, Y.5
  • 36
    • 38949123143 scopus 로고    scopus 로고
    • Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
    • Deveau H., Barrangou R., Garneau J., Labonte J., Fremaux C., et al. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 2008, 190:1390-1400.
    • (2008) J Bacteriol , vol.190 , pp. 1390-1400
    • Deveau, H.1    Barrangou, R.2    Garneau, J.3    Labonte, J.4    Fremaux, C.5
  • 37
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phage-bacteria interactions
    • Deveau H., Garneau J., Moineau S. CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol 2010, 64:475-493.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 475-493
    • Deveau, H.1    Garneau, J.2    Moineau, S.3
  • 38
    • 34547600663 scopus 로고    scopus 로고
    • Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs
    • Diaz-Pendon J., Li F., Li W., Ding S. Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 2007, 19:2053-2063.
    • (2007) Plant Cell , vol.19 , pp. 2053-2063
    • Diaz-Pendon, J.1    Li, F.2    Li, W.3    Ding, S.4
  • 39
  • 40
    • 1842534581 scopus 로고    scopus 로고
    • RNA silencing: a conserved antiviral immunity of plants and animals
    • Ding S., Li H., Lu R., Li F., Li W. RNA silencing: a conserved antiviral immunity of plants and animals. Virus Res 2004, 102:109-115.
    • (2004) Virus Res , vol.102 , pp. 109-115
    • Ding, S.1    Li, H.2    Lu, R.3    Li, F.4    Li, W.5
  • 41
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench J., Sharp P. Specificity of microRNA target selection in translational repression. Genes Dev 2004, 18:504-511.
    • (2004) Genes Dev , vol.18 , pp. 504-511
    • Doench, J.1    Sharp, P.2
  • 42
    • 53949108065 scopus 로고    scopus 로고
    • Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes
    • Dolgin E., Charlesworth B., Cutter A. Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes. Genet Res (Camb) 2008, 90:317-329.
    • (2008) Genet Res (Camb) , vol.90 , pp. 317-329
    • Dolgin, E.1    Charlesworth, B.2    Cutter, A.3
  • 43
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: patterns and determinants
    • Duffy S., Shackelton L., Holmes E. Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet 2008, 9:267-276.
    • (2008) Nat Rev Genet , vol.9 , pp. 267-276
    • Duffy, S.1    Shackelton, L.2    Holmes, E.3
  • 44
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21- and 22-nucleotide RNAs
    • Elbashir S. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 2001, 15:188-200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.1
  • 45
    • 84866023604 scopus 로고    scopus 로고
    • Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
    • Erdmann S., Garrett R. Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 2012, 85:1044-1056.
    • (2012) Mol Microbiol , vol.85 , pp. 1044-1056
    • Erdmann, S.1    Garrett, R.2
  • 46
    • 84873800970 scopus 로고    scopus 로고
    • Genome-scale engineering for systems and synthetic biology
    • Esvelt K., Wang H. Genome-scale engineering for systems and synthetic biology. Mol Syst Biol 2013, 9:641.
    • (2013) Mol Syst Biol , vol.9 , pp. 641
    • Esvelt, K.1    Wang, H.2
  • 47
    • 79957933956 scopus 로고    scopus 로고
    • Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
    • Ewing A., Kazazian H. Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. Genome Res 2011, 21:985-990.
    • (2011) Genome Res , vol.21 , pp. 985-990
    • Ewing, A.1    Kazazian, H.2
  • 48
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A., Xu S., Montgomery M., Kostas S., Driver S., Mello C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.3    Kostas, S.4    Driver, S.5    Mello, C.6
  • 49
    • 33744494279 scopus 로고    scopus 로고
    • Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila
    • Galiana-Arnoux D., Dostert C., Schneemann A., Hoffmann J., Imler J. Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila. Nat Immunol 2006, 7:590-597.
    • (2006) Nat Immunol , vol.7 , pp. 590-597
    • Galiana-Arnoux, D.1    Dostert, C.2    Schneemann, A.3    Hoffmann, J.4    Imler, J.5
  • 50
    • 77950367420 scopus 로고    scopus 로고
    • Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection
    • Garcia-Ruiz H., Takeda A., Chapman E., Sullivan C., Fahlgren N., Brempelis K., et al. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell 2010, 22:481-496.
    • (2010) Plant Cell , vol.22 , pp. 481-496
    • Garcia-Ruiz, H.1    Takeda, A.2    Chapman, E.3    Sullivan, C.4    Fahlgren, N.5    Brempelis, K.6
  • 51
    • 78149261827 scopus 로고    scopus 로고
    • The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
    • Garneau J., Dupuis M., Villion M., Romero D., Barrangou R., et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 2010, 468:67-71.
    • (2010) Nature , vol.468 , pp. 67-71
    • Garneau, J.1    Dupuis, M.2    Villion, M.3    Romero, D.4    Barrangou, R.5
  • 52
    • 80755153697 scopus 로고    scopus 로고
    • Archaeal CRISPR-based immune systems: exchangeable functional modules
    • Garrett R., Vestergaard G., Shah S. Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol 2011, 19:549-556.
    • (2011) Trends Microbiol , vol.19 , pp. 549-556
    • Garrett, R.1    Vestergaard, G.2    Shah, S.3
  • 53
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli V., Mallory A., Bartel D., Vaucheret H. Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 2005, 15:1494-1500.
    • (2005) Curr Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.2    Bartel, D.3    Vaucheret, H.4
  • 54
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A., Sachidanandam R., Hannon G., Carmell M. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 2006, 442:199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.3    Carmell, M.4
  • 55
    • 27744537851 scopus 로고    scopus 로고
    • Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
    • Gregory R., Chendrimada T., Cooch N., Shiekhattar R. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 2005, 123:631-640.
    • (2005) Cell , vol.123 , pp. 631-640
    • Gregory, R.1    Chendrimada, T.2    Cooch, N.3    Shiekhattar, R.4
  • 56
    • 26944450901 scopus 로고    scopus 로고
    • RNAi mechanisms in Caenorhabditis elegans
    • Grishok A. RNAi mechanisms in Caenorhabditis elegans. FEBS Lett 2005, 579:5932-5939.
    • (2005) FEBS Lett , vol.579 , pp. 5932-5939
    • Grishok, A.1
  • 57
    • 48449088977 scopus 로고    scopus 로고
    • CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats
    • Grissa I., Vergnaud G., Pourcel C. CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 2008, 36:W145-W148.
    • (2008) Nucleic Acids Res , vol.36
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 58
    • 33748602389 scopus 로고    scopus 로고
    • MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis
    • Grivna S., Pyhtila B., Lin H. MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis. Proc Natl Acad Sci USA 2006, 103:13415-13420.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 13415-13420
    • Grivna, S.1    Pyhtila, B.2    Lin, H.3
  • 59
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • Gudbergsdottir S., Deng L., Chen Z., Jensen J., Jensen L., et al. Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 2011, 79:35-49.
    • (2011) Mol Microbiol , vol.79 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.4    Jensen, L.5
  • 60
    • 33947390781 scopus 로고    scopus 로고
    • A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila
    • Gunawardane L., Saito K., Nishida K., Miyoshi K., Kawamura Y., Nagami T., et al. A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila. Science 2007, 315:1587-1590.
    • (2007) Science , vol.315 , pp. 1587-1590
    • Gunawardane, L.1    Saito, K.2    Nishida, K.3    Miyoshi, K.4    Kawamura, Y.5    Nagami, T.6
  • 61
    • 36849042601 scopus 로고    scopus 로고
    • RNA interference against viruses: strike and counterstrike
    • Haasnoot J., Westerhout E., Berkhout B. RNA interference against viruses: strike and counterstrike. Nat Biotechnol 2007, 25:1435-1443.
    • (2007) Nat Biotechnol , vol.25 , pp. 1435-1443
    • Haasnoot, J.1    Westerhout, E.2    Berkhout, B.3
  • 62
    • 80054971915 scopus 로고    scopus 로고
    • Targeted bacterial immunity buffers phage diversity
    • Haerter J., Trusina A., Sneppen K. Targeted bacterial immunity buffers phage diversity. J Virol 2011, 85:10554-10560.
    • (2011) J Virol , vol.85 , pp. 10554-10560
    • Haerter, J.1    Trusina, A.2    Sneppen, K.3
  • 63
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft D., Selengut J., Mongodin E., Nelson K. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005, 1:60.
    • (2005) PLoS Comput Biol , vol.1 , pp. 60
    • Haft, D.1    Selengut, J.2    Mongodin, E.3    Nelson, K.4
  • 64
    • 70449753811 scopus 로고    scopus 로고
    • RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
    • Hale C., Zhao P., Olson S., Duff M., Graveley B.R., et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009, 139:945-956.
    • (2009) Cell , vol.139 , pp. 945-956
    • Hale, C.1    Zhao, P.2    Olson, S.3    Duff, M.4    Graveley, B.R.5
  • 65
    • 84856792673 scopus 로고    scopus 로고
    • Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs
    • Hale C., Majumdar S., Elmore J., Pfister N., Compton M., Olson S., et al. Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 2012, 45:292-302.
    • (2012) Mol Cell , vol.45 , pp. 292-302
    • Hale, C.1    Majumdar, S.2    Elmore, J.3    Pfister, N.4    Compton, M.5    Olson, S.6
  • 66
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • Haley B., Zamore P. Kinetic analysis of the RNAi enzyme complex. Nat Struct Mol Biol 2004, 11:599-606.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.2
  • 67
    • 0033615491 scopus 로고    scopus 로고
    • A species of small antisense RNA in posttranscriptional gene silencing in plants
    • Hamilton A., Baulcombe D. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 1999, 286:950-952.
    • (1999) Science , vol.286 , pp. 950-952
    • Hamilton, A.1    Baulcombe, D.2
  • 68
    • 0035261255 scopus 로고    scopus 로고
    • Post-transcriptional gene silencing by double-stranded RNA
    • Hammond S., Caudy A., Hannon G. Post-transcriptional gene silencing by double-stranded RNA. Nat Rev Genet 2001, 2:110-119.
    • (2001) Nat Rev Genet , vol.2 , pp. 110-119
    • Hammond, S.1    Caudy, A.2    Hannon, G.3
  • 69
    • 59849113745 scopus 로고    scopus 로고
    • Characterization of the endonuclease SSO2001 from Sulfolobus solfataricus P2
    • Han D., Krauss G. Characterization of the endonuclease SSO2001 from Sulfolobus solfataricus P2. FEBS Lett 2009, 583:771-776.
    • (2009) FEBS Lett , vol.583 , pp. 771-776
    • Han, D.1    Krauss, G.2
  • 70
    • 77957124941 scopus 로고    scopus 로고
    • Heterogeneous diversity of spacers within CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)
    • He J., Deem M.W. Heterogeneous diversity of spacers within CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats). Phys Rev Lett 2010, 105:128102.
    • (2010) Phys Rev Lett , vol.105 , pp. 128102
    • He, J.1    Deem, M.W.2
  • 72
    • 0025826178 scopus 로고
    • Insertion element IS987 from Mycobacterium-Bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium-tuberculosis complex strains
    • Hermans P., et al. Insertion element IS987 from Mycobacterium-Bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium-tuberculosis complex strains. Infect Immun 1991, 59:2695-2705.
    • (1991) Infect Immun , vol.59 , pp. 2695-2705
    • Hermans, P.1
  • 73
    • 20244378840 scopus 로고    scopus 로고
    • Specific interactions between dicer-like proteins and HYL1/DRB- family dsRNA-binding proteins in Arabidopsis thaliana
    • Hiraguri A., Itoh R., Kondo N., Nomura Y., Aizawa D., Murai Y., et al. Specific interactions between dicer-like proteins and HYL1/DRB- family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol 2005, 57:173-188.
    • (2005) Plant Mol Biol , vol.57 , pp. 173-188
    • Hiraguri, A.1    Itoh, R.2    Kondo, N.3    Nomura, Y.4    Aizawa, D.5    Murai, Y.6
  • 74
    • 38949214103 scopus 로고    scopus 로고
    • Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
    • Horvath P., Romero D., Coute-Monvoisin A., Richards M., Deveau H., et al. Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol 2008, 190:1401-1412.
    • (2008) J Bacteriol , vol.190 , pp. 1401-1412
    • Horvath, P.1    Romero, D.2    Coute-Monvoisin, A.3    Richards, M.4    Deveau, H.5
  • 75
    • 80655124689 scopus 로고    scopus 로고
    • MicroRNAs and human retroviruses
    • Houzet L., Jeang K. MicroRNAs and human retroviruses. Biochim Biophys Acta 2011, 1809:686-693.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 686-693
    • Houzet, L.1    Jeang, K.2
  • 76
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
    • Ishino Y., Shinagawa H., Makino K., Amemura M., Nakata A. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J Bacteriol 1987, 169:5429-5433.
    • (1987) J Bacteriol , vol.169 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakata, A.5
  • 77
    • 84862524446 scopus 로고    scopus 로고
    • RNAi in the regulation of mammalian viral infections
    • Jeang K. RNAi in the regulation of mammalian viral infections. BMC Biol 2012, 10:58.
    • (2012) BMC Biol , vol.10 , pp. 58
    • Jeang, K.1
  • 78
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.5    Charpentier, E.6
  • 79
    • 73649130281 scopus 로고    scopus 로고
    • The CRISPR system: small RNA-guided defense in bacteria and archaea
    • Karginov F., Hannon G. The CRISPR system: small RNA-guided defense in bacteria and archaea. Mol Cell 2010, 37:7-19.
    • (2010) Mol Cell , vol.37 , pp. 7-19
    • Karginov, F.1    Hannon, G.2
  • 80
    • 84455206395 scopus 로고    scopus 로고
    • Adaptation to P element transposon invasion in Drosophila melanogaster
    • Khurana J., Wang J., Xu J., Koppetsch B., Thomson T., Nowosielska A., et al. Adaptation to P element transposon invasion in Drosophila melanogaster. Cell 2011, 147:1551-1563.
    • (2011) Cell , vol.147 , pp. 1551-1563
    • Khurana, J.1    Wang, J.2    Xu, J.3    Koppetsch, B.4    Thomson, T.5    Nowosielska, A.6
  • 81
    • 58849112575 scopus 로고    scopus 로고
    • Biogenesis of small RNAs in animals
    • Kim V., Han J., Siomi M. Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 2009, 10:126-139.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 126-139
    • Kim, V.1    Han, J.2    Siomi, M.3
  • 82
    • 41649115210 scopus 로고    scopus 로고
    • Sequence- and target-independent angiogenesis suppression by siRNA via TLR3
    • Kleinman M., Yamada K., Takeda A., Chandrasekaran V., Nozaki M., Baffi J., et al. Sequence- and target-independent angiogenesis suppression by siRNA via TLR3. Nature 2008, 452:591-597.
    • (2008) Nature , vol.452 , pp. 591-597
    • Kleinman, M.1    Yamada, K.2    Takeda, A.3    Chandrasekaran, V.4    Nozaki, M.5    Baffi, J.6
  • 83
    • 84896694740 scopus 로고    scopus 로고
    • The CRISPR-Cas system of antivirus immunity in prokaryotes: The showcase of a bona fide Lamarckian mechanism
    • FT Press
    • Koonin E. The CRISPR-Cas system of antivirus immunity in prokaryotes: The showcase of a bona fide Lamarckian mechanism. The logic of chance: the nature and origin of biological evolution 2011, FT Press.
    • (2011) The logic of chance: the nature and origin of biological evolution
    • Koonin, E.1
  • 84
    • 77649218943 scopus 로고    scopus 로고
    • Is evolution Darwinian or/and Lamarckian?
    • Koonin E., Wolf Y. Is evolution Darwinian or/and Lamarckian?. Biol Direct 2009, 4:42.
    • (2009) Biol Direct , vol.4 , pp. 42
    • Koonin, E.1    Wolf, Y.2
  • 85
    • 84865135020 scopus 로고    scopus 로고
    • Evolution of animal Piwi-interacting RNAs and prokaryotic CRISPRs
    • Kumar M., Chen K. Evolution of animal Piwi-interacting RNAs and prokaryotic CRISPRs. Brief Funct Genom 2012, 11:277-288.
    • (2012) Brief Funct Genom , vol.11 , pp. 277-288
    • Kumar, M.1    Chen, K.2
  • 86
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin V., Sorek R., Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007, 8:R61.
    • (2007) Genome Biol , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 87
    • 65649094845 scopus 로고    scopus 로고
    • Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila
    • Kurscheid S., Lew-Tabor A., Rodriguez Valle M., Bruyeres A., Doogan V., Munderloh U., et al. Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila. BMC Mol Biol 2009, 10:26.
    • (2009) BMC Mol Biol , vol.10 , pp. 26
    • Kurscheid, S.1    Lew-Tabor, A.2    Rodriguez Valle, M.3    Bruyeres, A.4    Doogan, V.5    Munderloh, U.6
  • 89
    • 0037123630 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing by an animal virus
    • Li H., Li W., Ding S. Induction and suppression of RNA silencing by an animal virus. Science 2002, 296:1319-1321.
    • (2002) Science , vol.296 , pp. 1319-1321
    • Li, H.1    Li, W.2    Ding, S.3
  • 90
    • 33748096466 scopus 로고    scopus 로고
    • A putative viral defence mechanism in archaeal cells
    • Lillestøl R., Redder P., Garrett R., Brügger K. A putative viral defence mechanism in archaeal cells. Archaea 2006, 2:59-72.
    • (2006) Archaea , vol.2 , pp. 59-72
    • Lillestøl, R.1    Redder, P.2    Garrett, R.3    Brügger, K.4
  • 91
    • 62949197925 scopus 로고    scopus 로고
    • CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
    • Lillestol R., Shah S., Brugger K., Redder P., Phan H., et al. CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 2009, 72:259-272.
    • (2009) Mol Microbiol , vol.72 , pp. 259-272
    • Lillestol, R.1    Shah, S.2    Brugger, K.3    Redder, P.4    Phan, H.5
  • 92
    • 0027145973 scopus 로고
    • Induction of a highly specific antiviral state in transgenic plants: implications for regulation of gene expression and virus resistance
    • Lindbo J., Silva-Rosales L., Proebsting W., Dougherty W. Induction of a highly specific antiviral state in transgenic plants: implications for regulation of gene expression and virus resistance. Plant Cell 1993, 5:1749-1759.
    • (1993) Plant Cell , vol.5 , pp. 1749-1759
    • Lindbo, J.1    Silva-Rosales, L.2    Proebsting, W.3    Dougherty, W.4
  • 93
    • 67649921029 scopus 로고    scopus 로고
    • Dicer-like (DCL) proteins in plants
    • Liu Q., Feng Y., Zhu Z. Dicer-like (DCL) proteins in plants. Funct Itegr Genomics 2009, 9:277-286.
    • (2009) Funct Itegr Genomics , vol.9 , pp. 277-286
    • Liu, Q.1    Feng, Y.2    Zhu, Z.3
  • 94
    • 84984539055 scopus 로고    scopus 로고
    • Role of microRNAs in hepatitis B virus replication and pathogenesis
    • Liu W., Yeh S., Chen P. Role of microRNAs in hepatitis B virus replication and pathogenesis. Biochim Biophys Acta 2011, 1809:678-685.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 678-685
    • Liu, W.1    Yeh, S.2    Chen, P.3
  • 95
    • 75649145014 scopus 로고    scopus 로고
    • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    • Lu J., Clark A. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res 2010, 20:212-227.
    • (2010) Genome Res , vol.20 , pp. 212-227
    • Lu, J.1    Clark, A.2
  • 96
    • 80155146885 scopus 로고    scopus 로고
    • Human piRNAs are under selection in Africans and repress transposable elements
    • Lukic S., Chen K. Human piRNAs are under selection in Africans and repress transposable elements. Mol Biol Evol 2011, 28:3061-3067.
    • (2011) Mol Biol Evol , vol.28 , pp. 3061-3067
    • Lukic, S.1    Chen, K.2
  • 97
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • Makarova K., Aravind L., Wolf Y., Koonin E. Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol Direct 2011, 6:38.
    • (2011) Biol Direct , vol.6 , pp. 38
    • Makarova, K.1    Aravind, L.2    Wolf, Y.3    Koonin, E.4
  • 98
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova K., Grishin N., Shabalina S., Wolf Y., Koonin E. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 2006, 1:7.
    • (2006) Biol Direct , vol.1 , pp. 7
    • Makarova, K.1    Grishin, N.2    Shabalina, S.3    Wolf, Y.4    Koonin, E.5
  • 100
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone C., Hannon G. Small RNAs as guardians of the genome. Cell 2009, 136:656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.1    Hannon, G.2
  • 101
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini L., Sontheimer E. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 2008, 322:1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.1    Sontheimer, E.2
  • 102
    • 33845864469 scopus 로고    scopus 로고
    • RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis dicer-like proteins
    • Moissiard G., Voinnet O. RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis dicer-like proteins. Proc Natl Acad Sci USA 2006, 103:19593-19598.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 19593-19598
    • Moissiard, G.1    Voinnet, O.2
  • 103
    • 0029166294 scopus 로고
    • Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax-mediterranei and Haloferax-volcanii and could be involved in replicon partitioning
    • Mojica F., et al. Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax-mediterranei and Haloferax-volcanii and could be involved in replicon partitioning. Mol Microbiol 1995, 17:85-93.
    • (1995) Mol Microbiol , vol.17 , pp. 85-93
    • Mojica, F.1
  • 104
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and Mitochondria
    • Mojica F., Diez-Villasenor C., Soria E., Juez G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and Mitochondria. Mol Microbiol 2000, 36:244-246.
    • (2000) Mol Microbiol , vol.36 , pp. 244-246
    • Mojica, F.1    Diez-Villasenor, C.2    Soria, E.3    Juez, G.4
  • 105
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica F., Diez-Villasenor C., Garcia-Martinez J., Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 2005, 60:174-182.
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 106
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica F., Diez-Villasenor C., Garcia-Martinez J., Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009, 155:733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 107
    • 0036009918 scopus 로고    scopus 로고
    • Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance
    • Morel J., Godon C., Mourrain P., Beclin C., Boutet S., et al. Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell 2002, 14:629-639.
    • (2002) Plant Cell , vol.14 , pp. 629-639
    • Morel, J.1    Godon, C.2    Mourrain, P.3    Beclin, C.4    Boutet, S.5
  • 108
    • 77958462907 scopus 로고    scopus 로고
    • Origins and evolution of microRNA genes in Drosophila species
    • Nozawa M., Miura S., Nei M. Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol 2010, 2:180-189.
    • (2010) Genome Biol Evol , vol.2 , pp. 180-189
    • Nozawa, M.1    Miura, S.2    Nei, M.3
  • 109
    • 83255185737 scopus 로고    scopus 로고
    • Special delivery: targeted therapy with small RNAs
    • Peer D., Lieberman J. Special delivery: targeted therapy with small RNAs. Gene Ther 2011, 18:1127-1133.
    • (2011) Gene Ther , vol.18 , pp. 1127-1133
    • Peer, D.1    Lieberman, J.2
  • 110
    • 70349320089 scopus 로고    scopus 로고
    • MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion
    • Peterson K., Dietrich M., McPeek M. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. BioEssays 2009, 31:736-747.
    • (2009) BioEssays , vol.31 , pp. 736-747
    • Peterson, K.1    Dietrich, M.2    McPeek, M.3
  • 111
    • 63449094751 scopus 로고    scopus 로고
    • Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis
    • Qi X., Bao F., Xie Z. Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis. PLoS ONE 2009, 4:e4971.
    • (2009) PLoS ONE , vol.4
    • Qi, X.1    Bao, F.2    Xie, Z.3
  • 112
    • 27144463588 scopus 로고    scopus 로고
    • Double-stranded RNA induces sequence-specific antiviral silencing in addition to nonspecific immunity in a marine shrimp: convergence of RNA interference and innate immunity in the invertebrate antiviral response?
    • Robalino J., Bartlett T., Shepard E., Prior S., Jaramillo G., Scura E., et al. Double-stranded RNA induces sequence-specific antiviral silencing in addition to nonspecific immunity in a marine shrimp: convergence of RNA interference and innate immunity in the invertebrate antiviral response?. J Virol 2005, 79:13561-13571.
    • (2005) J Virol , vol.79 , pp. 13561-13571
    • Robalino, J.1    Bartlett, T.2    Shepard, E.3    Prior, S.4    Jaramillo, G.5    Scura, E.6
  • 113
    • 54949095836 scopus 로고    scopus 로고
    • Misinterpreting the therapeutic effects of small interfering RNA caused by immune stimulation
    • Robbins M., Judge A., Ambegia E., Choi C., Yaworski E., Palmer L., et al. Misinterpreting the therapeutic effects of small interfering RNA caused by immune stimulation. Hum Gene Ther 2008, 19:991-999.
    • (2008) Hum Gene Ther , vol.19 , pp. 991-999
    • Robbins, M.1    Judge, A.2    Ambegia, E.3    Choi, C.4    Yaworski, E.5    Palmer, L.6
  • 114
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby J., Jan C., Player C., Axtell M., Lee W., Nusbaum C., et al. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 2006, 127:1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.1    Jan, C.2    Player, C.3    Axtell, M.4    Lee, W.5    Nusbaum, C.6
  • 116
    • 84879043747 scopus 로고    scopus 로고
    • Bacteria herald a new era of gene editing
    • Segal D. Bacteria herald a new era of gene editing. Elife 2013, 2:e00563.
    • (2013) Elife , vol.2
    • Segal, D.1
  • 117
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • Semenova E., Jore M., Datsenko K., Semenova A., Westra E., et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 2011, 108:10098-10103.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10098-10103
    • Semenova, E.1    Jore, M.2    Datsenko, K.3    Semenova, A.4    Westra, E.5
  • 118
    • 51449085579 scopus 로고    scopus 로고
    • Origins and evolution of eukaryotic RNA interference
    • Shabalina S., Koonin E. Origins and evolution of eukaryotic RNA interference. Trends Ecol Evol 2008, 23:578-587.
    • (2008) Trends Ecol Evol , vol.23 , pp. 578-587
    • Shabalina, S.1    Koonin, E.2
  • 119
    • 78650254130 scopus 로고    scopus 로고
    • CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems
    • Shah S., Garrett R. CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol 2011, 162:27-38.
    • (2011) Res Microbiol , vol.162 , pp. 27-38
    • Shah, S.1    Garrett, R.2
  • 120
    • 77955085897 scopus 로고    scopus 로고
    • Self-targeting by CRISPR: gene regulation or autoimmunity?
    • Stern A., Keren L., Wurtzel O., Amitai G., Sorek R. Self-targeting by CRISPR: gene regulation or autoimmunity?. Trends Genet 2010, 26:335-340.
    • (2010) Trends Genet , vol.26 , pp. 335-340
    • Stern, A.1    Keren, L.2    Wurtzel, O.3    Amitai, G.4    Sorek, R.5
  • 121
    • 0037188904 scopus 로고    scopus 로고
    • The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans
    • Tabara H., Yigit E., Siomi H., Mello C. The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell 2002, 109:861-871.
    • (2002) Cell , vol.109 , pp. 861-871
    • Tabara, H.1    Yigit, E.2    Siomi, H.3    Mello, C.4
  • 122
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • Terns M., Terns R. CRISPR-based adaptive immune systems. Curr Opin Microbiol 2011, 14:321-327.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 321-327
    • Terns, M.1    Terns, R.2
  • 123
    • 84878630603 scopus 로고    scopus 로고
    • RNAi therapeutics and applications of MicroRNAs in cancer treatment
    • Uchino K., Ochiya T., Takeshita F. RNAi therapeutics and applications of MicroRNAs in cancer treatment. Jpn J Clin Oncol 2013.
    • (2013) Jpn J Clin Oncol
    • Uchino, K.1    Ochiya, T.2    Takeshita, F.3
  • 124
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNAs and siRNAs
    • Valencia-Sanchez M., Liu J., Hannon G., Parker R. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev 2006, 20:515-524.
    • (2006) Genes Dev , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.1    Liu, J.2    Hannon, G.3    Parker, R.4
  • 125
    • 55049134757 scopus 로고    scopus 로고
    • RISC-target interaction: cleavage and translational suppression
    • van den Berg A., Mols J., Han J. RISC-target interaction: cleavage and translational suppression. Biochim Biophys Acta 2008, 1779:668-677.
    • (2008) Biochim Biophys Acta , vol.1779 , pp. 668-677
    • van den Berg, A.1    Mols, J.2    Han, J.3
  • 127
    • 0034000319 scopus 로고    scopus 로고
    • Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria
    • van Embden J., van Gorkom T., Kremer K., Jansen R., van Der Zeijst B., et al. Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria. J Bacteriol 2000, 182:2393-2401.
    • (2000) J Bacteriol , vol.182 , pp. 2393-2401
    • van Embden, J.1    van Gorkom, T.2    Kremer, K.3    Jansen, R.4    van Der Zeijst, B.5
  • 128
    • 0035933512 scopus 로고    scopus 로고
    • RNA silencing in plants-defense and counterdefense
    • Vance V., Vaucheret H. RNA silencing in plants-defense and counterdefense. Science 2001, 292:2277-2280.
    • (2001) Science , vol.292 , pp. 2277-2280
    • Vance, V.1    Vaucheret, H.2
  • 129
    • 0242317385 scopus 로고    scopus 로고
    • Small RNA: can RNA interference be exploited for therapy?
    • Wall N., Shi Y. Small RNA: can RNA interference be exploited for therapy?. Lancet 2003, 362:1401-1403.
    • (2003) Lancet , vol.362 , pp. 1401-1403
    • Wall, N.1    Shi, Y.2
  • 130
    • 76249093088 scopus 로고    scopus 로고
    • RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
    • Wang X., Wu Q., Ito T., Cillo F., Li W., Chen X., et al. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc Natl Acad Sci USA 2010, 107:484-489.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 484-489
    • Wang, X.1    Wu, Q.2    Ito, T.3    Cillo, F.4    Li, W.5    Chen, X.6
  • 131
    • 79957761869 scopus 로고    scopus 로고
    • The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana
    • Wang X., Jovel J., Udomporn P., Wang Y., Wu Q., Li W., et al. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 2011, 23:1625-1638.
    • (2011) Plant Cell , vol.23 , pp. 1625-1638
    • Wang, X.1    Jovel, J.2    Udomporn, P.3    Wang, Y.4    Wu, Q.5    Li, W.6
  • 132
    • 34548683716 scopus 로고    scopus 로고
    • Computational analysis of microRNA-mediated antiviral defense in humans
    • Watanabe Y., Kishi A., Yachie N., Kanai A., Tomita M. Computational analysis of microRNA-mediated antiviral defense in humans. FEBS Lett 2007, 581:4603-4610.
    • (2007) FEBS Lett , vol.581 , pp. 4603-4610
    • Watanabe, Y.1    Kishi, A.2    Yachie, N.3    Kanai, A.4    Tomita, M.5
  • 133
    • 84872139964 scopus 로고    scopus 로고
    • Viral diversity threshold for adaptive immunity in prokaryotes
    • e00456-12
    • Weinberger A., Wolf Y., Lobkovsky A., Gilmore M., Koonin E. Viral diversity threshold for adaptive immunity in prokaryotes. MBio 2012, 3:e00456-12.
    • (2012) MBio , vol.3
    • Weinberger, A.1    Wolf, Y.2    Lobkovsky, A.3    Gilmore, M.4    Koonin, E.5
  • 135
    • 66349134987 scopus 로고    scopus 로고
    • Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
    • Wiedenheft B., Zhou K., Jinek M., Coyle S., Ma W., et al. Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 2009, 17:904-912.
    • (2009) Structure , vol.17 , pp. 904-912
    • Wiedenheft, B.1    Zhou, K.2    Jinek, M.3    Coyle, S.4    Ma, W.5
  • 136
    • 80053169737 scopus 로고    scopus 로고
    • Structures of the RNA-guided surveillance complex from a bacterial immune system
    • Wiedenheft B., Lander G., Zhou K., Jore M., Brouns S., et al. Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 2011, 477:486-489.
    • (2011) Nature , vol.477 , pp. 486-489
    • Wiedenheft, B.1    Lander, G.2    Zhou, K.3    Jore, M.4    Brouns, S.5
  • 137
    • 0026338873 scopus 로고
    • Restriction and modification systems
    • Wilson G. Restriction and modification systems. Annu Rev Genet 1991, 25:585-627.
    • (1991) Annu Rev Genet , vol.25 , pp. 585-627
    • Wilson, G.1
  • 138
    • 0035932952 scopus 로고    scopus 로고
    • An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense
    • Xie Z., Fan B., Chen C., Chen Z. An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense. Proc Natl Acad Sci USA 2001, 98:6516-6521.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 6516-6521
    • Xie, Z.1    Fan, B.2    Chen, C.3    Chen, Z.4
  • 139
    • 0347361541 scopus 로고    scopus 로고
    • Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
    • Yi R., Qin Y., Macara I., Cullen B. Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 2003, 17:3011-3016.
    • (2003) Genes Dev , vol.17 , pp. 3011-3016
    • Yi, R.1    Qin, Y.2    Macara, I.3    Cullen, B.4
  • 140
    • 0037372466 scopus 로고    scopus 로고
    • Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense
    • Yu D., Fan B., MacFarlane S., Chen Z. Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense. Mol Plant-Microbe Interact 2003, 16:206-216.
    • (2003) Mol Plant-Microbe Interact , vol.16 , pp. 206-216
    • Yu, D.1    Fan, B.2    MacFarlane, S.3    Chen, Z.4
  • 141
    • 83255177161 scopus 로고    scopus 로고
    • Using non-coding small RNAs to develop therapies for Huntington's disease
    • Zhang Y., Friedlander R. Using non-coding small RNAs to develop therapies for Huntington's disease. Gene Ther 2011, 18:1139-1149.
    • (2011) Gene Ther , vol.18 , pp. 1139-1149
    • Zhang, Y.1    Friedlander, R.2
  • 142
    • 84856778250 scopus 로고    scopus 로고
    • Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
    • Zhang J., Rouillon C., Kerou M., Reeks J., Brugger K., et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol Cell 2012, 45:303-313.
    • (2012) Mol Cell , vol.45 , pp. 303-313
    • Zhang, J.1    Rouillon, C.2    Kerou, M.3    Reeks, J.4    Brugger, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.