-
1
-
-
14244272868
-
PHENIX: building new software for automated crystallographic structure determination
-
Adams P.D., Grosse-Kunstleve R.W., Hung L.W., Ioerger T.R., McCoy A.J., Moriarty N.W., Read R.J., Sacchettini J.C., Sauter N.K., and Terwilliger T.C. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 1948-1954
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
3
-
-
58149306337
-
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
-
Agari Y., Yokoyama S., Kuramitsu S., and Shinkai A. X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins 73 (2008) 1063-1067
-
(2008)
Proteins
, vol.73
, pp. 1063-1067
-
-
Agari, Y.1
Yokoyama, S.2
Kuramitsu, S.3
Shinkai, A.4
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R., Fremaux C., Deveau H., Richards M., Boyaval P., Moineau S., Romero D.A., and Horvath P. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315 (2007) 1709-1712
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
6
-
-
49649120271
-
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
-
Beloglazova N., Brown G., Zimmerman M.D., Proudfoot M., Makarova K.S., Kudritska M., Kochinyan S., Wang S., Chruszcz M., Minor W., et al. A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J. Biol. Chem. 283 (2008) 20361-20371
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20361-20371
-
-
Beloglazova, N.1
Brown, G.2
Zimmerman, M.D.3
Proudfoot, M.4
Makarova, K.S.5
Kudritska, M.6
Kochinyan, S.7
Wang, S.8
Chruszcz, M.9
Minor, W.10
-
7
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin A., Quinquis B., Sorokin A., and Ehrlich S.D. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151 (2005) 2551-2561
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
8
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns S.J., Jore M.M., Lundgren M., Westra E.R., Slijkhuis R.J., Snijders A.P., Dickman M.J., Makarova K.S., Koonin E.V., and van der Oost J. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321 (2008) 960-964
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
van der Oost, J.10
-
9
-
-
23044514646
-
Construction of a set Gateway-based destination vectors for high-throughput cloning and expression screening in Escherichia coli
-
Busso D., Delagoutte-Busso B., and Moras D. Construction of a set Gateway-based destination vectors for high-throughput cloning and expression screening in Escherichia coli. Anal. Biochem. 343 (2005) 313-321
-
(2005)
Anal. Biochem.
, vol.343
, pp. 313-321
-
-
Busso, D.1
Delagoutte-Busso, B.2
Moras, D.3
-
10
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte J., Wang R., Li H., Terns R.M., and Terns M.P. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22 (2008) 3489-3496
-
(2008)
Genes Dev.
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
11
-
-
33748337934
-
The Buccaneer software for automated model building. 1. Tracing protein chains
-
Cowtan K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62 (2006) 1002-1011
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1002-1011
-
-
Cowtan, K.1
-
13
-
-
67249130012
-
The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit
-
Dias A., Bouvier D., Crepin T., McCarthy A.A., Hart D.J., Baudin F., Cusack S., and Ruigrok R.W. The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit. Nature 458 (2009) 914-918
-
(2009)
Nature
, vol.458
, pp. 914-918
-
-
Dias, A.1
Bouvier, D.2
Crepin, T.3
McCarthy, A.A.4
Hart, D.J.5
Baudin, F.6
Cusack, S.7
Ruigrok, R.W.8
-
14
-
-
48249130503
-
An integrated look at metallonuclease mechanism
-
Dupureur C.M. An integrated look at metallonuclease mechanism. Curr. Chem. Biol. 2 (2008) 159-173
-
(2008)
Curr. Chem. Biol.
, vol.2
, pp. 159-173
-
-
Dupureur, C.M.1
-
15
-
-
43049110531
-
Roles of metal ions in nucleases
-
Dupureur C.M. Roles of metal ions in nucleases. Curr. Opin. Chem. Biol. 12 (2008) 250-255
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 250-255
-
-
Dupureur, C.M.1
-
16
-
-
33744503676
-
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
-
Ebihara A., Yao M., Masui R., Tanaka I., Yokoyama S., and Kuramitsu S. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci. 15 (2006) 1494-1499
-
(2006)
Protein Sci.
, vol.15
, pp. 1494-1499
-
-
Ebihara, A.1
Yao, M.2
Masui, R.3
Tanaka, I.4
Yokoyama, S.5
Kuramitsu, S.6
-
19
-
-
34547579396
-
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
-
Grissa I., Vergnaud G., and Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35 (2007) W52-W57
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
20
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft D.H., Selengut J., Mongodin E.F., and Nelson K.E. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 1 (2005) 474-483
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. 474-483
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
21
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
22
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen R., van Embden J.D.A., Gaastra W., and Schouls L.M. Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43 (2002) 1565-1575
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
van Embden, J.D.A.2
Gaastra, W.3
Schouls, L.M.4
-
23
-
-
85027632383
-
Automatic indexing of rotation diffraction patterns
-
Kabsch W. Automatic indexing of rotation diffraction patterns. J. Appl. Crystallogr. 21 (1988) 67-71
-
(1988)
J. Appl. Crystallogr.
, vol.21
, pp. 67-71
-
-
Kabsch, W.1
-
24
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26 (1993) 795-800
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
25
-
-
33750924336
-
Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial
-
Lee D.G., Urbach J.M., Wu G., Liberati N.T., Feinbaum R.L., Miyata S., Diggins L.T., He J., Saucier M., Deziel E., et al. Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol. 7 (2006) R90
-
(2006)
Genome Biol.
, vol.7
-
-
Lee, D.G.1
Urbach, J.M.2
Wu, G.3
Liberati, N.T.4
Feinbaum, R.L.5
Miyata, S.6
Diggins, L.T.7
He, J.8
Saucier, M.9
Deziel, E.10
-
26
-
-
0037079680
-
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
-
Makarova K.S., Aravind L., Grishin N.V., Rogozin I.B., and Koonin E.V. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30 (2002) 482-496
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 482-496
-
-
Makarova, K.S.1
Aravind, L.2
Grishin, N.V.3
Rogozin, I.B.4
Koonin, E.V.5
-
27
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova K.S., Grishin N.V., Shabalina S.A., Wolf Y.I., and Koonin E.V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 1 (2006) 1-26
-
(2006)
Biol. Direct
, vol.1
, pp. 1-26
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
28
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
-
Marraffini L.A., and Sontheimer E.J. CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA. Science 322 (2008) 1843-1845
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
29
-
-
0034034401
-
Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria
-
Mojica F.J., Diez-Villasenor C., Soria E., and Juez G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol. Microbiol. 36 (2000) 244-246
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 244-246
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
Soria, E.3
Juez, G.4
-
30
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica F.J., Diez-Villasenor C., Garcia-Martinez J., and Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60 (2005) 174-182
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Soria, E.4
-
31
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel C., Salvignol G., and Vergnaud G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151 (2005) 653-663
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
33
-
-
0037237545
-
Automated main-chain model building by template matching and iterative fragment extension
-
Terwilliger T.C. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr. D Biol. Crystallogr. 59 (2003) 38-44
-
(2003)
Acta Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 38-44
-
-
Terwilliger, T.C.1
-
35
-
-
0027439390
-
Atomic structures of the human immunophilin Fkbp-12 complexes with Fk506 and rapamycin
-
Van Duyne G.D., Standaert R.F., Karplus P.A., Schreiber S.L., and Clardy J. Atomic structures of the human immunophilin Fkbp-12 complexes with Fk506 and rapamycin. J. Mol. Biol. 229 (1993) 105-124
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
36
-
-
55549123481
-
An equivalent metal ion in one- and two-metal-ion catalysis
-
Yang W. An equivalent metal ion in one- and two-metal-ion catalysis. Nat. Struct. Mol. Biol. 15 (2008) 1228-1231
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1228-1231
-
-
Yang, W.1
-
37
-
-
58149479228
-
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of P. aeruginosa
-
Zegans M.E., Wagner J.C., Cady K.C., Murphy D.M., Hammond J.H., and O'Toole G.A. Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of P. aeruginosa. J. Bacteriol. 191 (2009) 210-219
-
(2009)
J. Bacteriol.
, vol.191
, pp. 210-219
-
-
Zegans, M.E.1
Wagner, J.C.2
Cady, K.C.3
Murphy, D.M.4
Hammond, J.H.5
O'Toole, G.A.6
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