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Volumn 17, Issue 6, 2009, Pages 904-912

Structural Basis for DNase Activity of a Conserved Protein Implicated in CRISPR-Mediated Genome Defense

Author keywords

DNA; MICROBIO; PROTEINS

Indexed keywords

CLUSTERED REGULARY INTERSPACED SHORT PALINDROMIC REPEAT ASSOCIATED GENE 1 PROTEIN; DEOXYRIBONUCLEASE; DOUBLE STRANDED DNA; METAL ION; UNCLASSIFIED DRUG;

EID: 66349134987     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2009.03.019     Document Type: Article
Times cited : (207)

References (37)
  • 3
    • 58149306337 scopus 로고    scopus 로고
    • X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
    • Agari Y., Yokoyama S., Kuramitsu S., and Shinkai A. X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins 73 (2008) 1063-1067
    • (2008) Proteins , vol.73 , pp. 1063-1067
    • Agari, Y.1    Yokoyama, S.2    Kuramitsu, S.3    Shinkai, A.4
  • 7
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A., Quinquis B., Sorokin A., and Ehrlich S.D. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151 (2005) 2551-2561
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 9
    • 23044514646 scopus 로고    scopus 로고
    • Construction of a set Gateway-based destination vectors for high-throughput cloning and expression screening in Escherichia coli
    • Busso D., Delagoutte-Busso B., and Moras D. Construction of a set Gateway-based destination vectors for high-throughput cloning and expression screening in Escherichia coli. Anal. Biochem. 343 (2005) 313-321
    • (2005) Anal. Biochem. , vol.343 , pp. 313-321
    • Busso, D.1    Delagoutte-Busso, B.2    Moras, D.3
  • 10
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J., Wang R., Li H., Terns R.M., and Terns M.P. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22 (2008) 3489-3496
    • (2008) Genes Dev. , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 11
    • 33748337934 scopus 로고    scopus 로고
    • The Buccaneer software for automated model building. 1. Tracing protein chains
    • Cowtan K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62 (2006) 1002-1011
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 1002-1011
    • Cowtan, K.1
  • 14
    • 48249130503 scopus 로고    scopus 로고
    • An integrated look at metallonuclease mechanism
    • Dupureur C.M. An integrated look at metallonuclease mechanism. Curr. Chem. Biol. 2 (2008) 159-173
    • (2008) Curr. Chem. Biol. , vol.2 , pp. 159-173
    • Dupureur, C.M.1
  • 15
    • 43049110531 scopus 로고    scopus 로고
    • Roles of metal ions in nucleases
    • Dupureur C.M. Roles of metal ions in nucleases. Curr. Opin. Chem. Biol. 12 (2008) 250-255
    • (2008) Curr. Opin. Chem. Biol. , vol.12 , pp. 250-255
    • Dupureur, C.M.1
  • 16
    • 33744503676 scopus 로고    scopus 로고
    • Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
    • Ebihara A., Yao M., Masui R., Tanaka I., Yokoyama S., and Kuramitsu S. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci. 15 (2006) 1494-1499
    • (2006) Protein Sci. , vol.15 , pp. 1494-1499
    • Ebihara, A.1    Yao, M.2    Masui, R.3    Tanaka, I.4    Yokoyama, S.5    Kuramitsu, S.6
  • 19
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I., Vergnaud G., and Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35 (2007) W52-W57
    • (2007) Nucleic Acids Res. , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 20
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft D.H., Selengut J., Mongodin E.F., and Nelson K.E. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 1 (2005) 474-483
    • (2005) PLoS Comput. Biol. , vol.1 , pp. 474-483
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 21
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 22
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R., van Embden J.D.A., Gaastra W., and Schouls L.M. Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43 (2002) 1565-1575
    • (2002) Mol. Microbiol. , vol.43 , pp. 1565-1575
    • Jansen, R.1    van Embden, J.D.A.2    Gaastra, W.3    Schouls, L.M.4
  • 23
    • 85027632383 scopus 로고
    • Automatic indexing of rotation diffraction patterns
    • Kabsch W. Automatic indexing of rotation diffraction patterns. J. Appl. Crystallogr. 21 (1988) 67-71
    • (1988) J. Appl. Crystallogr. , vol.21 , pp. 67-71
    • Kabsch, W.1
  • 24
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26 (1993) 795-800
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 26
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova K.S., Aravind L., Grishin N.V., Rogozin I.B., and Koonin E.V. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30 (2002) 482-496
    • (2002) Nucleic Acids Res. , vol.30 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 27
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova K.S., Grishin N.V., Shabalina S.A., Wolf Y.I., and Koonin E.V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 1 (2006) 1-26
    • (2006) Biol. Direct , vol.1 , pp. 1-26
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 28
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
    • Marraffini L.A., and Sontheimer E.J. CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA. Science 322 (2008) 1843-1845
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 29
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria
    • Mojica F.J., Diez-Villasenor C., Soria E., and Juez G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol. Microbiol. 36 (2000) 244-246
    • (2000) Mol. Microbiol. , vol.36 , pp. 244-246
    • Mojica, F.J.1    Diez-Villasenor, C.2    Soria, E.3    Juez, G.4
  • 30
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica F.J., Diez-Villasenor C., Garcia-Martinez J., and Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60 (2005) 174-182
    • (2005) J. Mol. Evol. , vol.60 , pp. 174-182
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 31
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel C., Salvignol G., and Vergnaud G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151 (2005) 653-663
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 33
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model building by template matching and iterative fragment extension
    • Terwilliger T.C. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr. D Biol. Crystallogr. 59 (2003) 38-44
    • (2003) Acta Crystallogr. D Biol. Crystallogr. , vol.59 , pp. 38-44
    • Terwilliger, T.C.1
  • 35
    • 0027439390 scopus 로고
    • Atomic structures of the human immunophilin Fkbp-12 complexes with Fk506 and rapamycin
    • Van Duyne G.D., Standaert R.F., Karplus P.A., Schreiber S.L., and Clardy J. Atomic structures of the human immunophilin Fkbp-12 complexes with Fk506 and rapamycin. J. Mol. Biol. 229 (1993) 105-124
    • (1993) J. Mol. Biol. , vol.229 , pp. 105-124
    • Van Duyne, G.D.1    Standaert, R.F.2    Karplus, P.A.3    Schreiber, S.L.4    Clardy, J.5
  • 36
    • 55549123481 scopus 로고    scopus 로고
    • An equivalent metal ion in one- and two-metal-ion catalysis
    • Yang W. An equivalent metal ion in one- and two-metal-ion catalysis. Nat. Struct. Mol. Biol. 15 (2008) 1228-1231
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1228-1231
    • Yang, W.1
  • 37
    • 58149479228 scopus 로고    scopus 로고
    • Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of P. aeruginosa
    • Zegans M.E., Wagner J.C., Cady K.C., Murphy D.M., Hammond J.H., and O'Toole G.A. Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of P. aeruginosa. J. Bacteriol. 191 (2009) 210-219
    • (2009) J. Bacteriol. , vol.191 , pp. 210-219
    • Zegans, M.E.1    Wagner, J.C.2    Cady, K.C.3    Murphy, D.M.4    Hammond, J.H.5    O'Toole, G.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.