메뉴 건너뛰기




Volumn 20, Issue 2, 2010, Pages 212-227

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Author keywords

[No Author keywords available]

Indexed keywords

PIWI INTERACTING RNA;

EID: 75649145014     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.095406.109     Document Type: Article
Times cited : (77)

References (126)
  • 1
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. 2004. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
    • (2004) Nat Genet , vol.36 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 2
    • 23044509495 scopus 로고    scopus 로고
    • Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila
    • Aminetzach YT, Macpherson JM, Petrov DA. 2005. Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila. Science 309: 764-767.
    • (2005) Science , vol.309 , pp. 764-767
    • Aminetzach, Y.T.1    Macpherson, J.M.2    Petrov, D.A.3
  • 3
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA. 2001. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027.
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 4
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin AA, Hannon GJ, Brennecke J. 2007. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 5
    • 28844435684 scopus 로고    scopus 로고
    • Drosophila melanogaster: A case study of a model genomic sequence and its consequences
    • Ashburner M, Bergman CM. 2005. Drosophila melanogaster: A case study of a model genomic sequence and its consequences. Genome Res 15: 1661-1667.
    • (2005) Genome Res , vol.15 , pp. 1661-1667
    • Ashburner, M.1    Bergman, C.M.2
  • 7
    • 66349118913 scopus 로고    scopus 로고
    • Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
    • Assis R, Kondrashov AS. 2009. Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution. Proc Natl Acad Sci 106: 7079-7082.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 7079-7082
    • Assis, R.1    Kondrashov, A.S.2
  • 8
    • 0031860788 scopus 로고    scopus 로고
    • A novel repressor of P element transposition in Drosophila melanogaster
    • Badge RM, Brookfield JF. 1998. A novel repressor of P element transposition in Drosophila melanogaster. Genet Res 71: 21-30.
    • (1998) Genet Res , vol.71 , pp. 21-30
    • Badge, R.M.1    Brookfield, J.F.2
  • 9
    • 0036274271 scopus 로고    scopus 로고
    • On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster
    • Bartolome C, Maside X, Charlesworth B. 2002. On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol Biol Evol 19: 926-937.
    • (2002) Mol Biol Evol , vol.19 , pp. 926-937
    • Bartolome, C.1    Maside, X.2    Charlesworth, B.3
  • 11
    • 34547471449 scopus 로고    scopus 로고
    • Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
    • Bergman CM, Bensasson D. 2007. Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. Proc Natl Acad Sci 104: 11340-11345.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 11340-11345
    • Bergman, C.M.1    Bensasson, D.2
  • 12
    • 33847749916 scopus 로고    scopus 로고
    • Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
    • doi: 10.1186/gb-2006-7-11-r112
    • Bergman C, Quesneville H, Anxolabehere D, Ashburner M. 2006. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol 7: R112. doi: 10.1186/gb-2006-7-11-r112.
    • (2006) Genome Biol , vol.7
    • Bergman, C.1    Quesneville, H.2    Anxolabehere, D.3    Ashburner, M.4
  • 13
    • 0027033739 scopus 로고
    • Population genetics of transposable DNA elements. A Drosophila point of view
    • Biemont C. 1992. Population genetics of transposable DNA elements. A Drosophila point of view. Genetica 86: 67-84.
    • (1992) Genetica , vol.86 , pp. 67-84
    • Biemont, C.1
  • 14
    • 0345335954 scopus 로고
    • Copy-number dependent transpositions and excisions of the mdg-1 mobile element in inbred lines of Drosophila melanogaster
    • Biemont C, Aouar A. 1987. Copy-number dependent transpositions and excisions of the mdg-1 mobile element in inbred lines of Drosophila melanogaster. Heredity 58: 39-47.
    • (1987) Heredity , vol.58 , pp. 39-47
    • Biemont, C.1    Aouar, A.2
  • 15
    • 23844460513 scopus 로고    scopus 로고
    • What transposable elements tell us about genome organization and evolution: The case of Drosophila
    • Biemont C, Vieira C. 2005. What transposable elements tell us about genome organization and evolution: The case of Drosophila. Cytogenet Genome Res 110: 25-34.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 25-34
    • Biemont, C.1    Vieira, C.2
  • 16
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: Junk DNA as an evolutionary force
    • Biemont C, Vieira C. 2006. Genetics: Junk DNA as an evolutionary force. Nature 443: 521-524.
    • (2006) Nature , vol.443 , pp. 521-524
    • Biemont, C.1    Vieira, C.2
  • 17
    • 0025175640 scopus 로고
    • Localization of P elements, copy number regulation, and cytotype determination in Drosophila melanogaster
    • Biemont C, Ronsseray S, Anxolabehere D, Izaabel H, Gautier C. 1990. Localization of P elements, copy number regulation, and cytotype determination in Drosophila melanogaster. Genet Res 56: 3-14.
    • (1990) Genet Res , vol.56 , pp. 3-14
    • Biemont, C.1    Ronsseray, S.2    Anxolabehere, D.3    Izaabel, H.4    Gautier, C.5
  • 18
    • 0028285214 scopus 로고
    • Population dynamics of the copia, mdg1, mdg3, gypsy, and P transposable elements in a natural population of Drosophila melanogaster
    • Biemont C, Lemeunier F, Garcia Guerreiro MP, Brookfield JF, Gautier C, Aulard S, Pasyukova EG. 1994. Population dynamics of the copia, mdg1, mdg3, gypsy, and P transposable elements in a natural population of Drosophila melanogaster. Genet Res 63: 197-212.
    • (1994) Genet Res , vol.63 , pp. 197-212
    • Biemont, C.1    Lemeunier, F.2    Garcia Guerreiro, M.P.3    Brookfield, J.F.4    Gautier, C.5    Aulard, S.6    Pasyukova, E.G.7
  • 19
    • 0041544253 scopus 로고    scopus 로고
    • Transposable elements and genome evolution: The case of Drosophila simulans
    • Biemont C, Vieira C, Borie N, Lepetit D. 1999. Transposable elements and genome evolution: The case of Drosophila simulans. Genetica 107: 113-120.
    • (1999) Genetica , vol.107 , pp. 113-120
    • Biemont, C.1    Vieira, C.2    Borie, N.3    Lepetit, D.4
  • 21
    • 0024061031 scopus 로고
    • Molecular analysis of the P-M gonadal dysgenesis cline in eastern Australian Drosophila melanogaster
    • Boussy IA, Healy MJ, Oakeshott JG, Kidwell MG. 1988. Molecular analysis of the P-M gonadal dysgenesis cline in eastern Australian Drosophila melanogaster. Genetics 119: 889-902.
    • (1988) Genetics , vol.119 , pp. 889-902
    • Boussy, I.A.1    Healy, M.J.2    Oakeshott, J.G.3    Kidwell, M.G.4
  • 22
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 24
    • 32444444701 scopus 로고    scopus 로고
    • Transposable elements have contributed to thousands of human proteins
    • Britten R. 2006. Transposable elements have contributed to thousands of human proteins. Proc Natl Acad Sci 103: 1798-1803.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 1798-1803
    • Britten, R.1
  • 25
    • 0025942274 scopus 로고
    • Models of repression of transposition in P-M hybrid dysgenesis by P cytotype and by zygotically encoded repressor proteins
    • Brookfield JFY. 1991. Models of repression of transposition in P-M hybrid dysgenesis by P cytotype and by zygotically encoded repressor proteins. Genetics 128: 471-486.
    • (1991) Genetics , vol.128 , pp. 471-486
    • Brookfield, J.F.Y.1
  • 26
    • 2342466169 scopus 로고    scopus 로고
    • Evolutionary genetics: Mobile DNAs as sources of adaptive change?
    • Brookfield JF. 2004. Evolutionary genetics: Mobile DNAs as sources of adaptive change? Curr Biol 14: R344-R345.
    • (2004) Curr Biol , vol.14
    • Brookfield, J.F.1
  • 27
    • 13144255696 scopus 로고    scopus 로고
    • The ecology of the genome - mobile DNA elements and their hosts
    • Brookfield JFY. 2005. The ecology of the genome - mobile DNA elements and their hosts. Nat Rev Genet 6: 128-136.
    • (2005) Nat Rev Genet , vol.6 , pp. 128-136
    • Brookfield, J.F.Y.1
  • 28
    • 0031452212 scopus 로고    scopus 로고
    • Population genetics models of transposable elements
    • Brookfield JF, Badge RM. 1997. Population genetics models of transposable elements. Genetica 100: 281-294.
    • (1997) Genetica , vol.100 , pp. 281-294
    • Brookfield, J.F.1    Badge, R.M.2
  • 30
    • 0029097654 scopus 로고
    • The relationship between the flamenco gene and gypsy in Drosophila: How to tame a retrovirus
    • Bucheton A. 1995. The relationship between the flamenco gene and gypsy in Drosophila: How to tame a retrovirus. Trends Genet 11: 349-353.
    • (1995) Trends Genet , vol.11 , pp. 349-353
    • Bucheton, A.1
  • 31
    • 0026322962 scopus 로고
    • Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia
    • Capy P, Maruyama K, David JR, Hartl DL. 1991. Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia. J Mol Evol 33: 450-456.
    • (1991) J Mol Evol , vol.33 , pp. 450-456
    • Capy, P.1    Maruyama, K.2    David, J.R.3    Hartl, D.L.4
  • 32
    • 0036188623 scopus 로고    scopus 로고
    • Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster
    • Carr M, Soloway JR, Robinson TE, Brookfield JF. 2002. Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster. Chromosoma 110: 511-518.
    • (2002) Chromosoma , vol.110 , pp. 511-518
    • Carr, M.1    Soloway, J.R.2    Robinson, T.E.3    Brookfield, J.F.4
  • 33
    • 32044447172 scopus 로고    scopus 로고
    • Identification of transposable elements using multiple alignments of related genomes
    • Caspi A, Pachter L. 2006. Identification of transposable elements using multiple alignments of related genomes. Genome Res 16: 260-270.
    • (2006) Genome Res , vol.16 , pp. 260-270
    • Caspi, A.1    Pachter, L.2
  • 34
    • 0029084748 scopus 로고
    • A genetically tagged, defective I element can be complemented by actively transposing I factors in the germline of I-R dysgenic females in Drosophila melanogaster
    • Chaboissier MC, Bornecque C, Busseau I, Bucheton A. 1995. A genetically tagged, defective I element can be complemented by actively transposing I factors in the germline of I-R dysgenic females in Drosophila melanogaster. Mol Gen Genet 248: 434-438.
    • (1995) Mol Gen Genet , vol.248 , pp. 434-438
    • Chaboissier, M.C.1    Bornecque, C.2    Busseau, I.3    Bucheton, A.4
  • 36
    • 0023679416 scopus 로고
    • The maintenance of transposable elements in natural populations
    • Charlesworth B. 1988. The maintenance of transposable elements in natural populations. Basic Life Sci 47: 189-212.
    • (1988) Basic Life Sci , vol.47 , pp. 189-212
    • Charlesworth, B.1
  • 37
    • 0025079181 scopus 로고
    • Mutation-selection balance and the evolutionary advantage of sex and recombination
    • Charlesworth B. 1990. Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet Res 55: 199-221.
    • (1990) Genet Res , vol.55 , pp. 199-221
    • Charlesworth, B.1
  • 38
    • 0021077476 scopus 로고
    • The population dynamics of transposable elements
    • Charlesworth B, Charlesworth D. 1983. The population dynamics of transposable elements. Genet Res 42: 1-27.
    • (1983) Genet Res , vol.42 , pp. 1-27
    • Charlesworth, B.1    Charlesworth, D.2
  • 39
    • 0022600495 scopus 로고
    • The evolution of self-regulated transposition of transposable elements
    • Charlesworth B, Langley CH. 1986. The evolution of self-regulated transposition of transposable elements. Genetics 112: 359-383.
    • (1986) Genetics , vol.112 , pp. 359-383
    • Charlesworth, B.1    Langley, C.H.2
  • 40
    • 0024836563 scopus 로고
    • The population genetics of Drosophila transposable elements
    • Charlesworth B, Langley CH. 1989. The population genetics of Drosophila transposable elements. Annu Rev Genet 23: 251-287.
    • (1989) Annu Rev Genet , vol.23 , pp. 251-287
    • Charlesworth, B.1    Langley, C.H.2
  • 41
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • StephanW
    • Charlesworth B, Sniegowski P, StephanW. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220.
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2
  • 42
    • 0031297912 scopus 로고    scopus 로고
    • Transposable element distributions in Drosophila
    • Charlesworth B, Langley CH, Sniegowski PD. 1997. Transposable element distributions in Drosophila. Genetics 147: 1993-1995.
    • (1997) Genetics , vol.147 , pp. 1993-1995
    • Charlesworth, B.1    Langley, C.H.2    Sniegowski, P.D.3
  • 44
    • 0036263105 scopus 로고    scopus 로고
    • Population, evolutionary and genomic consequences of interference selection
    • Comeron JM, Kreitman M. 2002. Population, evolutionary and genomic consequences of interference selection. Genetics 161: 389-410.
    • (2002) Genetics , vol.161 , pp. 389-410
    • Comeron, J.M.1    Kreitman, M.2
  • 48
    • 45249113294 scopus 로고    scopus 로고
    • In Drosophila melanogaster the COM locus directs the somatic silencing of two retrotransposons through both Piwi-dependent and -independent pathways
    • doi: 10.1371/journal.pone.0001526
    • Desset S, Buchon N, Meignin C, Coiffet M, Vaury C. 2008. In Drosophila melanogaster the COM locus directs the somatic silencing of two retrotransposons through both Piwi-dependent and -independent pathways. PLoS One 3: e1526. doi: 10.1371/journal.pone.0001526.
    • (2008) PLoS One , vol.3
    • Desset, S.1    Buchon, N.2    Meignin, C.3    Coiffet, M.4    Vaury, C.5
  • 49
    • 33750465172 scopus 로고    scopus 로고
    • The fate of transposable elements in asexual populations
    • Dolgin ES, Charlesworth B. 2006. The fate of transposable elements in asexual populations. Genetics 174: 817-827.
    • (2006) Genetics , vol.174 , pp. 817-827
    • Dolgin, E.S.1    Charlesworth, B.2
  • 50
    • 45849088092 scopus 로고    scopus 로고
    • The effects of recombination rate on the distribution and abundance of transposable elements
    • Dolgin ES, Charlesworth B. 2008. The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178: 2169-2177.
    • (2008) Genetics , vol.178 , pp. 2169-2177
    • Dolgin, E.S.1    Charlesworth, B.2
  • 51
    • 47149117454 scopus 로고    scopus 로고
    • Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
    • Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
  • 52
    • 0009102352 scopus 로고
    • The fitness consequences of P-element insertion in Drosophila melanogaster
    • Eanes WF, Wesley D, Hey J, Houle D, Ajioka JW. 1987. The fitness consequences of P-element insertion in Drosophila melanogaster. Genet Res 52: 17-26.
    • (1987) Genet Res , vol.52 , pp. 17-26
    • Eanes, W.F.1    Wesley, D.2    Hey, J.3    Houle, D.4    Ajioka, J.W.5
  • 53
    • 0024298633 scopus 로고
    • P-M hybrid dysgenesis does not mobilize other transposable element families in D. melanogaster
    • Eggleston WB, Johnson-Schlitz DM, Engels WR. 1988. P-M hybrid dysgenesis does not mobilize other transposable element families in D. melanogaster. Nature 331: 368-370.
    • (1988) Nature , vol.331 , pp. 368-370
    • Eggleston, W.B.1    Johnson-Schlitz, D.M.2    Engels, W.R.3
  • 54
    • 0023058707 scopus 로고
    • On the evolution and population genetics of hybriddysgenesis-causing transposable elements in Drosophila
    • Engels WR. 1986. On the evolution and population genetics of hybriddysgenesis-causing transposable elements in Drosophila. Philos Trans R Soc Lond B Biol Sci 312: 205-215.
    • (1986) Philos Trans R Soc Lond B Biol Sci , vol.312 , pp. 205-215
    • Engels, W.R.1
  • 56
  • 58
    • 39949083375 scopus 로고    scopus 로고
    • Conserved themes in small-RNA-mediated transposon control
    • Girard A, Hannon GJ. 2008. Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18: 136-148.
    • (2008) Trends Cell Biol , vol.18 , pp. 136-148
    • Girard, A.1    Hannon, G.J.2
  • 59
    • 54949129791 scopus 로고    scopus 로고
    • High rate of recent transposable element-induced adaptation in Drosophila melanogaster
    • doi: 10.1371/journal.pbio.0060251
    • Gonzalez J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. 2008. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. PLoS Biol 6: e251. doi: 10.1371/journal.pbio.0060251.
    • (2008) PLoS Biol , vol.6
    • Gonzalez, J.1    Lenkov, K.2    Lipatov, M.3    Macpherson, J.M.4    Petrov, D.A.5
  • 60
    • 60149111297 scopus 로고    scopus 로고
    • Inferring the strength of selection in Drosophila under complex demographic models
    • Gonzalez J, Macpherson JM, Messer PW, Petrov DA. 2009. Inferring the strength of selection in Drosophila under complex demographic models. Mol Biol Evol 26: 513-526.
    • (2009) Mol Biol Evol , vol.26 , pp. 513-526
    • Gonzalez, J.1    Macpherson, J.M.2    Messer, P.W.3    Petrov, D.A.4
  • 62
    • 0025212268 scopus 로고
    • Transposition rates of movable genetic elements in Drosophila melanogaster
    • Harada K, Yukuhiro K, Mukai T. 1990. Transposition rates of movable genetic elements in Drosophila melanogaster. Proc Natl Acad Sci 87: 3248-3252.
    • (1990) Proc Natl Acad Sci , vol.87 , pp. 3248-3252
    • Harada, K.1    Yukuhiro, K.2    Mukai, T.3
  • 63
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill WG, Robertson A. 1966. The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
    • (1966) Genet Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 64
    • 0029744396 scopus 로고    scopus 로고
    • Chromosomal distribution of transposable elements in Drosophila melanogaster: Test of the ectopic recombination model for maintenance of insertion site number
    • Hoogland C, Biemont C. 1996. Chromosomal distribution of transposable elements in Drosophila melanogaster: Test of the ectopic recombination model for maintenance of insertion site number. Genetics 144: 197-204.
    • (1996) Genetics , vol.144 , pp. 197-204
    • Hoogland, C.1    Biemont, C.2
  • 65
    • 0019345054 scopus 로고
    • Derivation-dependent distribution of insertion sites for a Drosophila transposon
    • Ising G, Block K. 1981. Derivation-dependent distribution of insertion sites for a Drosophila transposon. Cold Spring Harb SympQuant Biol 45: 527-544.
    • (1981) Cold Spring Harb SympQuant Biol , vol.45 , pp. 527-544
    • Ising, G.1    Block, K.2
  • 66
    • 0029082246 scopus 로고
    • Defective I elements introduced into Drosophila as transgenes can regulate reactivity and prevent I-R hybrid dysgenesis
    • Jensen S, Cavarec L, Gassama MP, Heidmann T. 1995. Defective I elements introduced into Drosophila as transgenes can regulate reactivity and prevent I-R hybrid dysgenesis. Mol Gen Genet 248: 381-390.
    • (1995) Mol Gen Genet , vol.248 , pp. 381-390
    • Jensen, S.1    Cavarec, L.2    Gassama, M.P.3    Heidmann, T.4
  • 67
    • 0036861669 scopus 로고    scopus 로고
    • Regulation of I-transposon activity in Drosophila: Evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements
    • Jensen S, Gassama MP, Dramard X, Heidmann T. 2002. Regulation of I-transposon activity in Drosophila: Evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements. Genetics 162: 1197-1209.
    • (2002) Genetics , vol.162 , pp. 1197-1209
    • Jensen, S.1    Gassama, M.P.2    Dramard, X.3    Heidmann, T.4
  • 68
    • 57749177443 scopus 로고    scopus 로고
    • RNA-based gene duplication: Mechanistic and evolutionary insights
    • Kaessmann H, Vinckenbosch N, Long M. 2009. RNA-based gene duplication: Mechanistic and evolutionary insights. Nat Rev Genet 10: 19-31.
    • (2009) Nat Rev Genet , vol.10 , pp. 19-31
    • Kaessmann, H.1    Vinckenbosch, N.2    Long, M.3
  • 69
    • 0031906250 scopus 로고    scopus 로고
    • Su(Ste) diverged tandem repeats in a Y chromosome of Drosophila melanogaster are transcribed and variously processed
    • Kalmykova AI, Dobritsa AA, Gvozdev VA. 1998. Su(Ste) diverged tandem repeats in a Y chromosome of Drosophila melanogaster are transcribed and variously processed. Genetics 148: 243-249.
    • (1998) Genetics , vol.148 , pp. 243-249
    • Kalmykova, A.I.1    Dobritsa, A.A.2    Gvozdev, V.A.3
  • 71
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • KazazianHHJr. 2004. Mobile elements: Drivers of genome evolution. Science 303: 1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • KazazianHHJr1
  • 72
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - the BLAST-like alignment tool
    • Kent WJ. 2002. BLAT - the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 73
    • 0020583913 scopus 로고
    • Hybrid dysgenesis in Drosophila melanogaster: Factors affecting chromosomal contamination in the P-M system
    • Kidwell MG. 1983. Hybrid dysgenesis in Drosophila melanogaster: Factors affecting chromosomal contamination in the P-M system. Genetics 104: 317-341.
    • (1983) Genetics , vol.104 , pp. 317-341
    • Kidwell, M.G.1
  • 74
    • 0034889359 scopus 로고    scopus 로고
    • Transposon-induced hotspots for genomic instability
    • Kidwell MG, Holyoake AJ. 2001. Transposon-induced hotspots for genomic instability. Genome Res 11: 1321-1322.
    • (2001) Genome Res , vol.11 , pp. 1321-1322
    • Kidwell, M.G.1    Holyoake, A.J.2
  • 76
    • 0020560127 scopus 로고
    • Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
    • Kreitman M. 1983. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304: 412-417.
    • (1983) Nature , vol.304 , pp. 412-417
    • Kreitman, M.1
  • 78
    • 0020966007 scopus 로고
    • Transposable elements in Mendelian populations. I. A theory
    • Langley CH, Brookfield JFY, Kaplan NL. 1983. Transposable elements in Mendelian populations. I. A theory. Genetics 104: 457-471.
    • (1983) Genetics , vol.104 , pp. 457-471
    • Langley, C.H.1    Brookfield, J.F.Y.2    Kaplan, N.L.3
  • 79
    • 0024210911 scopus 로고
    • On the role of unequal exchange in the containment of transposable element copy number
    • Langley CH, Montgomery E, Hudson R, Kaplan N, Charlesworth B. 1988. On the role of unequal exchange in the containment of transposable element copy number. Genet Res 52: 223-235.
    • (1988) Genet Res , vol.52 , pp. 223-235
    • Langley, C.H.1    Montgomery, E.2    Hudson, R.3    Kaplan, N.4    Charlesworth, B.5
  • 80
    • 33750461976 scopus 로고    scopus 로고
    • Population genetics models of competition between transposable element subfamilies
    • Le Rouzic A, Capy P. 2006. Population genetics models of competition between transposable element subfamilies. Genetics 174: 785-793.
    • (2006) Genetics , vol.174 , pp. 785-793
    • Le Rouzic, A.1    Capy, P.2
  • 81
    • 24644515295 scopus 로고    scopus 로고
    • Models of the population genetics of transposable elements
    • Le Rouzic A, Deceliere G. 2005. Models of the population genetics of transposable elements. Genet Res 85: 171-181.
    • (2005) Genet Res , vol.85 , pp. 171-181
    • Le Rouzic, A.1    Deceliere, G.2
  • 82
    • 37649005250 scopus 로고    scopus 로고
    • Long-term evolution of transposable elements
    • Le Rouzic A, Boutin TS, Capy P. 2007. Long-term evolution of transposable elements. Proc Natl Acad Sci 104: 19375-19380.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 19375-19380
    • Le Rouzic, A.1    Boutin, T.S.2    Capy, P.3
  • 84
    • 68549085526 scopus 로고    scopus 로고
    • A novel epigenetic mechanism in Drosophila somatic cells mediated by Piwi and piRNAs
    • Lin H, Yin H. 2008. A novel epigenetic mechanism in Drosophila somatic cells mediated by Piwi and piRNAs. Cold Spring Harb Symp Quant Biol 73: 273-281.
    • (2008) Cold Spring Harb Symp Quant Biol , vol.73 , pp. 273-281
    • Lin, H.1    Yin, H.2
  • 85
    • 34249937354 scopus 로고    scopus 로고
    • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    • Lowe CB, Bejerano G, Haussler D. 2007. Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci 104: 8005-8010.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 8005-8010
    • Lowe, C.B.1    Bejerano, G.2    Haussler, D.3
  • 88
    • 0024509557 scopus 로고
    • Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster
    • Lyckegaard EM, Clark AG. 1989. Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci 86: 1944-1948.
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 1944-1948
    • Lyckegaard, E.M.1    Clark, A.G.2
  • 89
    • 0026525956 scopus 로고
    • Effects of P element insertions on quantitative traits in Drosophila melanogaster
    • Mackay TF, Lyman RF, Jackson MS. 1992. Effects of P element insertions on quantitative traits in Drosophila melanogaster. Genetics 130: 315-332.
    • (1992) Genetics , vol.130 , pp. 315-332
    • Mackay, T.F.1    Lyman, R.F.2    Jackson, M.S.3
  • 90
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone CD, Hannon GJ. 2009. Small RNAs as guardians of the genome. Cell 136: 656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.D.1    Hannon, G.J.2
  • 92
    • 0034124187 scopus 로고    scopus 로고
    • Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster
    • Maside X, Assimacopoulos S, Charlesworth B. 2000. Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster. Genet Res 75: 275-284.
    • (2000) Genet Res , vol.75 , pp. 275-284
    • Maside, X.1    Assimacopoulos, S.2    Charlesworth, B.3
  • 93
    • 0034765945 scopus 로고    scopus 로고
    • Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data
    • Maside X, Bartolome C, Assimacopoulos S, Charlesworth B. 2001. Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data. Genet Res 78: 121-136.
    • (2001) Genet Res , vol.78 , pp. 121-136
    • Maside, X.1    Bartolome, C.2    Assimacopoulos, S.3    Charlesworth, B.4
  • 95
    • 34249011855 scopus 로고    scopus 로고
    • The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis
    • Mevel-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A. 2007. The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis. Genetics 175: 1615-1624.
    • (2007) Genetics , vol.175 , pp. 1615-1624
    • Mevel-Ninio, M.1    Pelisson, A.2    Kinder, J.3    Campos, A.R.4    Bucheton, A.5
  • 96
    • 0000293262 scopus 로고
    • Transposable elements in Mendelian populations. II. Distribution of three COPIA-like elements in a natural population of Drosophila melanogaster
    • Montgomery EA, Langley CH. 1983. Transposable elements in Mendelian populations. II. Distribution of three COPIA-like elements in a natural population of Drosophila melanogaster. Genetics 104: 473-483.
    • (1983) Genetics , vol.104 , pp. 473-483
    • Montgomery, E.A.1    Langley, C.H.2
  • 97
    • 0023284059 scopus 로고
    • A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster
    • Montgomery E, Charlesworth B, Langley CH. 1987. A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genet Res 49: 31-41.
    • (1987) Genet Res , vol.49 , pp. 31-41
    • Montgomery, E.1    Charlesworth, B.2    Langley, C.H.3
  • 98
    • 8444229706 scopus 로고    scopus 로고
    • Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies
    • Neafsey DE, Blumenstiel JP, Hartl DL. 2004. Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies. Mol Biol Evol 21: 2310-2318.
    • (2004) Mol Biol Evol , vol.21 , pp. 2310-2318
    • Neafsey, D.E.1    Blumenstiel, J.P.2    Hartl, D.L.3
  • 99
    • 34250669989 scopus 로고    scopus 로고
    • Molecular mechanisms of RNA silencing by siRNA, miRNA and piRNA]
    • Nishida KM, Siomi MC. 2006. [Molecular mechanisms of RNA silencing by siRNA, miRNA and piRNA]. Tanpakushitsu Kakusan Koso 51: 2450-2455.
    • (2006) Tanpakushitsu Kakusan Koso , vol.51 , pp. 2450-2455
    • Nishida, K.M.1    Siomi, M.C.2
  • 101
    • 0033288823 scopus 로고    scopus 로고
    • Sure facts, speculations, and open questions about the evolution of transposable element copy number
    • Nuzhdin SV. 1999. Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107: 129-137.
    • (1999) Genetica , vol.107 , pp. 129-137
    • Nuzhdin, S.V.1
  • 102
    • 0028306352 scopus 로고
    • Direct determination of retrotransposon transposition rates in Drosophila melanogaster
    • Nuzhdin SV, Mackay TF. 1994. Direct determination of retrotransposon transposition rates in Drosophila melanogaster. Genet Res 63: 139-144.
    • (1994) Genet Res , vol.63 , pp. 139-144
    • Nuzhdin, S.V.1    Mackay, T.F.2
  • 103
    • 0029181962 scopus 로고
    • The genomic rate of transposable element movement in Drosophila melanogaster
    • Nuzhdin SV, Mackay TF. 1995. The genomic rate of transposable element movement in Drosophila melanogaster. Mol Biol Evol 12: 180-181.
    • (1995) Mol Biol Evol , vol.12 , pp. 180-181
    • Nuzhdin, S.V.1    Mackay, T.F.2
  • 104
    • 0031469985 scopus 로고    scopus 로고
    • Accumulation of transposable elements in laboratory lines of Drosophila melanogaster
    • Nuzhdin SV, Pasyukova EG, Mackay TF. 1997. Accumulation of transposable elements in laboratory lines of Drosophila melanogaster. Genetica 100: 167-175.
    • (1997) Genetica , vol.100 , pp. 167-175
    • Nuzhdin, S.V.1    Pasyukova, E.G.2    Mackay, T.F.3
  • 105
    • 0015722319 scopus 로고
    • Slightly deleterious mutant substitutions in evolution
    • Ohta T. 1973. Slightly deleterious mutant substitutions in evolution. Nature 246: 96-98.
    • (1973) Nature , vol.246 , pp. 96-98
    • Ohta, T.1
  • 106
    • 0020519534 scopus 로고
    • Theoretical study on the accumulation of selfish DNA
    • Ohta T. 1983. Theoretical study on the accumulation of selfish DNA. Genet Res 41: 1-15.
    • (1983) Genet Res , vol.41 , pp. 1-15
    • Ohta, T.1
  • 107
    • 3242676911 scopus 로고    scopus 로고
    • Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness
    • Pasyukova EG, Nuzhdin SV, Morozova TV, Mackay TF. 2004. Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness. J Hered 95: 284-290.
    • (2004) J Hered , vol.95 , pp. 284-290
    • Pasyukova, E.G.1    Nuzhdin, S.V.2    Morozova, T.V.3    Mackay, T.F.4
  • 108
    • 33846810192 scopus 로고    scopus 로고
    • A novel repeatassociated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary
    • Pelisson A, Sarot E, Payen-Groschene G, Bucheton A. 2007. A novel repeatassociated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary. J Virol 81: 1951-1960.
    • (2007) J Virol , vol.81 , pp. 1951-1960
    • Pelisson, A.1    Sarot, E.2    Payen-Groschene, G.3    Bucheton, A.4
  • 109
    • 0038247887 scopus 로고    scopus 로고
    • Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila
    • Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE. 2003. Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol Biol Evol 20: 880-892.
    • (2003) Mol Biol Evol , vol.20 , pp. 880-892
    • Petrov, D.A.1    Aminetzach, Y.T.2    Davis, J.C.3    Bensasson, D.4    Hirsh, A.E.5
  • 110
    • 0026749828 scopus 로고
    • I-R hybrid dysgenesis in Drosophila melanogaster. Use of in situ hybridization to show the association of I factor DNA with induced sex-linked recessive lethals
    • Proust J, Prudhommeau C, Ladeveze V, Gotteland M, Fontyne-Branchard MC. 1992. I-R hybrid dysgenesis in Drosophila melanogaster. Use of in situ hybridization to show the association of I factor DNA with induced sex-linked recessive lethals. Mutat Res 268: 265-285.
    • (1992) Mutat Res , vol.268 , pp. 265-285
    • Proust, J.1    Prudhommeau, C.2    Ladeveze, V.3    Gotteland, M.4    Fontyne-Branchard, M.C.5
  • 111
    • 0031451224 scopus 로고    scopus 로고
    • A simulation of P element horizontal transfer in Drosophila
    • Quesneville H, Anxolabehere D. 1997. A simulation of P element horizontal transfer in Drosophila. Genetica 100: 295-307.
    • (1997) Genetica , vol.100 , pp. 295-307
    • Quesneville, H.1    Anxolabehere, D.2
  • 112
    • 0344936621 scopus 로고    scopus 로고
    • Dynamics of transposable elements in metapopulations: A model of P element invasion in Drosophila
    • Quesneville H, Anxolabehere D. 1998. Dynamics of transposable elements in metapopulations: A model of P element invasion in Drosophila. Theor Popul Biol 54: 175-193.
    • (1998) Theor Popul Biol , vol.54 , pp. 175-193
    • Quesneville, H.1    Anxolabehere, D.2
  • 114
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on theWWWfor general users and for biologist programmers
    • Rozen S, Skaletsky H. 2000. Primer3 on theWWWfor general users and for biologist programmers. Methods Mol Biol 132: 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 116
    • 1942453393 scopus 로고    scopus 로고
    • Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene
    • Sarot E, Payen-Groschene G, Bucheton A, Pelisson A. 2004. Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene. Genetics 166: 1313-1321.
    • (2004) Genetics , vol.166 , pp. 1313-1321
    • Sarot, E.1    Payen-Groschene, G.2    Bucheton, A.3    Pelisson, A.4
  • 117
    • 1242274636 scopus 로고    scopus 로고
    • Strong selective sweep associated with a transposon insertion in Drosophila simulans
    • Schlenke TA, Begun DJ. 2004. Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci 101: 1626-1631.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 1626-1631
    • Schlenke, T.A.1    Begun, D.J.2
  • 119
    • 44349122539 scopus 로고    scopus 로고
    • Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution
    • Siomi H, Siomi MC. 2008. Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution. Curr Opin Genet Dev 18: 181-187.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 181-187
    • Siomi, H.1    Siomi, M.C.2
  • 120
    • 35549001303 scopus 로고    scopus 로고
    • Mutational interference and the progression of Muller's ratchet when mutations have a broad range of deleterious effects
    • Soderberg RJ, Berg OG. 2007. Mutational interference and the progression of Muller's ratchet when mutations have a broad range of deleterious effects. Genetics 177: 971-986.
    • (2007) Genetics , vol.177 , pp. 971-986
    • Soderberg, R.J.1    Berg, O.G.2
  • 121
    • 0029095623 scopus 로고
    • Studies on the transposition rates of mobile genetic elements in a natural population of Drosophila melanogaster
    • Suh DS, Choi EH, Yamazaki T, Harada K. 1995. Studies on the transposition rates of mobile genetic elements in a natural population of Drosophila melanogaster. Mol Biol Evol 12: 748-758.
    • (1995) Mol Biol Evol , vol.12 , pp. 748-758
    • Suh, D.S.1    Choi, E.H.2    Yamazaki, T.3    Harada, K.4
  • 122
    • 70350238350 scopus 로고    scopus 로고
    • The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect
    • Thomson T, Lin H. 2009. The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect. Annu Rev Cell Dev Biol 25: 355-376.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 355-376
    • Thomson, T.1    Lin, H.2
  • 123
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324.
    • (2006) Science , vol.313 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 124
    • 43549088103 scopus 로고    scopus 로고
    • Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
    • doi: 10.1186/gb-2008-9-2-r39
    • Yang HP, Barbash DA. 2008. Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol 9: R39. doi: 10.1186/gb-2008-9-2-r39.
    • (2008) Genome Biol , vol.9
    • Yang, H.P.1    Barbash, D.A.2
  • 125
    • 38949119483 scopus 로고    scopus 로고
    • Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS
    • doi: 10.1371/journal.pgen.0040003
    • Yang S, Arguello JR, Li X, Ding Y, Zhou Q, Chen Y, Zhang Y, Zhao R, Brunet F, Peng L, et al. 2008. Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 4: e3. doi: 10.1371/journal.pgen.0040003.
    • (2008) Genet , vol.4
    • Yang, S.1    Arguello, J.R.2    Li, X.3    Ding, Y.4    Zhou, Q.5    Chen, Y.6    Zhang, Y.7    Zhao, R.8    Brunet, F.9    Peng, L.10
  • 126
    • 36048937264 scopus 로고    scopus 로고
    • An epigenetic activation role of Piwi and a Piwiassociated piRNA in Drosophila melanogaster
    • Yin H, Lin H. 2007. An epigenetic activation role of Piwi and a Piwiassociated piRNA in Drosophila melanogaster. Nature 450: 304-308.
    • (2007) Nature , vol.450 , pp. 304-308
    • Yin, H.1    Lin, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.