-
1
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. 2004. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
2
-
-
23044509495
-
Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila
-
Aminetzach YT, Macpherson JM, Petrov DA. 2005. Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila. Science 309: 764-767.
-
(2005)
Science
, vol.309
, pp. 764-767
-
-
Aminetzach, Y.T.1
Macpherson, J.M.2
Petrov, D.A.3
-
3
-
-
0035838369
-
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
-
Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA. 2001. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027.
-
(2001)
Curr Biol
, vol.11
, pp. 1017-1027
-
-
Aravin, A.A.1
Naumova, N.M.2
Tulin, A.V.3
Vagin, V.V.4
Rozovsky, Y.M.5
Gvozdev, V.A.6
-
4
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
Aravin AA, Hannon GJ, Brennecke J. 2007. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764.
-
(2007)
Science
, vol.318
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
5
-
-
28844435684
-
Drosophila melanogaster: A case study of a model genomic sequence and its consequences
-
Ashburner M, Bergman CM. 2005. Drosophila melanogaster: A case study of a model genomic sequence and its consequences. Genome Res 15: 1661-1667.
-
(2005)
Genome Res
, vol.15
, pp. 1661-1667
-
-
Ashburner, M.1
Bergman, C.M.2
-
7
-
-
66349118913
-
Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
-
Assis R, Kondrashov AS. 2009. Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution. Proc Natl Acad Sci 106: 7079-7082.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 7079-7082
-
-
Assis, R.1
Kondrashov, A.S.2
-
8
-
-
0031860788
-
A novel repressor of P element transposition in Drosophila melanogaster
-
Badge RM, Brookfield JF. 1998. A novel repressor of P element transposition in Drosophila melanogaster. Genet Res 71: 21-30.
-
(1998)
Genet Res
, vol.71
, pp. 21-30
-
-
Badge, R.M.1
Brookfield, J.F.2
-
9
-
-
0036274271
-
On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster
-
Bartolome C, Maside X, Charlesworth B. 2002. On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol Biol Evol 19: 926-937.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 926-937
-
-
Bartolome, C.1
Maside, X.2
Charlesworth, B.3
-
10
-
-
35948940895
-
Population genomics: Whole-genome analysis of polymorphismand divergence in Drosophila simulans
-
doi: 10.1371/journal.pbio.0050310
-
Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, HahnMW, Nista PM, Jones CD, Kern AD, Dewey CN, et al. 2007. Population genomics: Whole-genome analysis of polymorphismand divergence in Drosophila simulans. PLoS Biol 5: e310. doi: 10.1371/journal.pbio.0050310.
-
(2007)
PLoS Biol
, vol.5
-
-
Begun, D.J.1
Holloway, A.K.2
Stevens, K.3
Hillier, L.W.4
Poh, Y.P.5
Hahn, M.W.6
Nista, P.M.7
Jones, C.D.8
Kern, A.D.9
Dewey, C.N.10
-
11
-
-
34547471449
-
Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
-
Bergman CM, Bensasson D. 2007. Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. Proc Natl Acad Sci 104: 11340-11345.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 11340-11345
-
-
Bergman, C.M.1
Bensasson, D.2
-
12
-
-
33847749916
-
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
-
doi: 10.1186/gb-2006-7-11-r112
-
Bergman C, Quesneville H, Anxolabehere D, Ashburner M. 2006. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol 7: R112. doi: 10.1186/gb-2006-7-11-r112.
-
(2006)
Genome Biol
, vol.7
-
-
Bergman, C.1
Quesneville, H.2
Anxolabehere, D.3
Ashburner, M.4
-
13
-
-
0027033739
-
Population genetics of transposable DNA elements. A Drosophila point of view
-
Biemont C. 1992. Population genetics of transposable DNA elements. A Drosophila point of view. Genetica 86: 67-84.
-
(1992)
Genetica
, vol.86
, pp. 67-84
-
-
Biemont, C.1
-
14
-
-
0345335954
-
Copy-number dependent transpositions and excisions of the mdg-1 mobile element in inbred lines of Drosophila melanogaster
-
Biemont C, Aouar A. 1987. Copy-number dependent transpositions and excisions of the mdg-1 mobile element in inbred lines of Drosophila melanogaster. Heredity 58: 39-47.
-
(1987)
Heredity
, vol.58
, pp. 39-47
-
-
Biemont, C.1
Aouar, A.2
-
15
-
-
23844460513
-
What transposable elements tell us about genome organization and evolution: The case of Drosophila
-
Biemont C, Vieira C. 2005. What transposable elements tell us about genome organization and evolution: The case of Drosophila. Cytogenet Genome Res 110: 25-34.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 25-34
-
-
Biemont, C.1
Vieira, C.2
-
16
-
-
33749522239
-
Genetics: Junk DNA as an evolutionary force
-
Biemont C, Vieira C. 2006. Genetics: Junk DNA as an evolutionary force. Nature 443: 521-524.
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biemont, C.1
Vieira, C.2
-
17
-
-
0025175640
-
Localization of P elements, copy number regulation, and cytotype determination in Drosophila melanogaster
-
Biemont C, Ronsseray S, Anxolabehere D, Izaabel H, Gautier C. 1990. Localization of P elements, copy number regulation, and cytotype determination in Drosophila melanogaster. Genet Res 56: 3-14.
-
(1990)
Genet Res
, vol.56
, pp. 3-14
-
-
Biemont, C.1
Ronsseray, S.2
Anxolabehere, D.3
Izaabel, H.4
Gautier, C.5
-
18
-
-
0028285214
-
Population dynamics of the copia, mdg1, mdg3, gypsy, and P transposable elements in a natural population of Drosophila melanogaster
-
Biemont C, Lemeunier F, Garcia Guerreiro MP, Brookfield JF, Gautier C, Aulard S, Pasyukova EG. 1994. Population dynamics of the copia, mdg1, mdg3, gypsy, and P transposable elements in a natural population of Drosophila melanogaster. Genet Res 63: 197-212.
-
(1994)
Genet Res
, vol.63
, pp. 197-212
-
-
Biemont, C.1
Lemeunier, F.2
Garcia Guerreiro, M.P.3
Brookfield, J.F.4
Gautier, C.5
Aulard, S.6
Pasyukova, E.G.7
-
19
-
-
0041544253
-
Transposable elements and genome evolution: The case of Drosophila simulans
-
Biemont C, Vieira C, Borie N, Lepetit D. 1999. Transposable elements and genome evolution: The case of Drosophila simulans. Genetica 107: 113-120.
-
(1999)
Genetica
, vol.107
, pp. 113-120
-
-
Biemont, C.1
Vieira, C.2
Borie, N.3
Lepetit, D.4
-
21
-
-
0024061031
-
Molecular analysis of the P-M gonadal dysgenesis cline in eastern Australian Drosophila melanogaster
-
Boussy IA, Healy MJ, Oakeshott JG, Kidwell MG. 1988. Molecular analysis of the P-M gonadal dysgenesis cline in eastern Australian Drosophila melanogaster. Genetics 119: 889-902.
-
(1988)
Genetics
, vol.119
, pp. 889-902
-
-
Boussy, I.A.1
Healy, M.J.2
Oakeshott, J.G.3
Kidwell, M.G.4
-
22
-
-
33947273235
-
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
-
Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
-
(2007)
Cell
, vol.128
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
23
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
Brennecke J, Malone CD, Aravin AA, SachidanandamR, Stark A, Hannon GJ. 2008. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322: 1387-1392.
-
(2008)
Science
, vol.322
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
Hannon, G.J.6
-
24
-
-
32444444701
-
Transposable elements have contributed to thousands of human proteins
-
Britten R. 2006. Transposable elements have contributed to thousands of human proteins. Proc Natl Acad Sci 103: 1798-1803.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 1798-1803
-
-
Britten, R.1
-
25
-
-
0025942274
-
Models of repression of transposition in P-M hybrid dysgenesis by P cytotype and by zygotically encoded repressor proteins
-
Brookfield JFY. 1991. Models of repression of transposition in P-M hybrid dysgenesis by P cytotype and by zygotically encoded repressor proteins. Genetics 128: 471-486.
-
(1991)
Genetics
, vol.128
, pp. 471-486
-
-
Brookfield, J.F.Y.1
-
26
-
-
2342466169
-
Evolutionary genetics: Mobile DNAs as sources of adaptive change?
-
Brookfield JF. 2004. Evolutionary genetics: Mobile DNAs as sources of adaptive change? Curr Biol 14: R344-R345.
-
(2004)
Curr Biol
, vol.14
-
-
Brookfield, J.F.1
-
27
-
-
13144255696
-
The ecology of the genome - mobile DNA elements and their hosts
-
Brookfield JFY. 2005. The ecology of the genome - mobile DNA elements and their hosts. Nat Rev Genet 6: 128-136.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 128-136
-
-
Brookfield, J.F.Y.1
-
28
-
-
0031452212
-
Population genetics models of transposable elements
-
Brookfield JF, Badge RM. 1997. Population genetics models of transposable elements. Genetica 100: 281-294.
-
(1997)
Genetica
, vol.100
, pp. 281-294
-
-
Brookfield, J.F.1
Badge, R.M.2
-
29
-
-
34548822460
-
Drosophila PIWI associates with chromatin and interacts directly with HP1a
-
Brower-Toland B, Findley SD, Jiang L, Liu L, Yin H, Dus M, Zhou P, Elgin SC, Lin H. 2007. Drosophila PIWI associates with chromatin and interacts directly with HP1a. Genes & Dev 21: 2300-2311.
-
(2007)
Genes & Dev
, vol.21
, pp. 2300-2311
-
-
Brower-Toland, B.1
Findley, S.D.2
Jiang, L.3
Liu, L.4
Yin, H.5
Dus, M.6
Zhou, P.7
Elgin, S.C.8
Lin, H.9
-
30
-
-
0029097654
-
The relationship between the flamenco gene and gypsy in Drosophila: How to tame a retrovirus
-
Bucheton A. 1995. The relationship between the flamenco gene and gypsy in Drosophila: How to tame a retrovirus. Trends Genet 11: 349-353.
-
(1995)
Trends Genet
, vol.11
, pp. 349-353
-
-
Bucheton, A.1
-
31
-
-
0026322962
-
Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia
-
Capy P, Maruyama K, David JR, Hartl DL. 1991. Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia. J Mol Evol 33: 450-456.
-
(1991)
J Mol Evol
, vol.33
, pp. 450-456
-
-
Capy, P.1
Maruyama, K.2
David, J.R.3
Hartl, D.L.4
-
32
-
-
0036188623
-
Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster
-
Carr M, Soloway JR, Robinson TE, Brookfield JF. 2002. Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster. Chromosoma 110: 511-518.
-
(2002)
Chromosoma
, vol.110
, pp. 511-518
-
-
Carr, M.1
Soloway, J.R.2
Robinson, T.E.3
Brookfield, J.F.4
-
33
-
-
32044447172
-
Identification of transposable elements using multiple alignments of related genomes
-
Caspi A, Pachter L. 2006. Identification of transposable elements using multiple alignments of related genomes. Genome Res 16: 260-270.
-
(2006)
Genome Res
, vol.16
, pp. 260-270
-
-
Caspi, A.1
Pachter, L.2
-
34
-
-
0029084748
-
A genetically tagged, defective I element can be complemented by actively transposing I factors in the germline of I-R dysgenic females in Drosophila melanogaster
-
Chaboissier MC, Bornecque C, Busseau I, Bucheton A. 1995. A genetically tagged, defective I element can be complemented by actively transposing I factors in the germline of I-R dysgenic females in Drosophila melanogaster. Mol Gen Genet 248: 434-438.
-
(1995)
Mol Gen Genet
, vol.248
, pp. 434-438
-
-
Chaboissier, M.C.1
Bornecque, C.2
Busseau, I.3
Bucheton, A.4
-
35
-
-
54449086787
-
piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline
-
Chambeyron S, Popkova A, Payen-Groschene G, Brun C, Laouini D, Pelisson A, Bucheton A. 2008. piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline. Proc Natl Acad Sci 105: 14964-14969.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 14964-14969
-
-
Chambeyron, S.1
Popkova, A.2
Payen-Groschene, G.3
Brun, C.4
Laouini, D.5
Pelisson, A.6
Bucheton, A.7
-
36
-
-
0023679416
-
The maintenance of transposable elements in natural populations
-
Charlesworth B. 1988. The maintenance of transposable elements in natural populations. Basic Life Sci 47: 189-212.
-
(1988)
Basic Life Sci
, vol.47
, pp. 189-212
-
-
Charlesworth, B.1
-
37
-
-
0025079181
-
Mutation-selection balance and the evolutionary advantage of sex and recombination
-
Charlesworth B. 1990. Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet Res 55: 199-221.
-
(1990)
Genet Res
, vol.55
, pp. 199-221
-
-
Charlesworth, B.1
-
38
-
-
0021077476
-
The population dynamics of transposable elements
-
Charlesworth B, Charlesworth D. 1983. The population dynamics of transposable elements. Genet Res 42: 1-27.
-
(1983)
Genet Res
, vol.42
, pp. 1-27
-
-
Charlesworth, B.1
Charlesworth, D.2
-
39
-
-
0022600495
-
The evolution of self-regulated transposition of transposable elements
-
Charlesworth B, Langley CH. 1986. The evolution of self-regulated transposition of transposable elements. Genetics 112: 359-383.
-
(1986)
Genetics
, vol.112
, pp. 359-383
-
-
Charlesworth, B.1
Langley, C.H.2
-
40
-
-
0024836563
-
The population genetics of Drosophila transposable elements
-
Charlesworth B, Langley CH. 1989. The population genetics of Drosophila transposable elements. Annu Rev Genet 23: 251-287.
-
(1989)
Annu Rev Genet
, vol.23
, pp. 251-287
-
-
Charlesworth, B.1
Langley, C.H.2
-
41
-
-
0028108183
-
The evolutionary dynamics of repetitive DNA in eukaryotes
-
StephanW
-
Charlesworth B, Sniegowski P, StephanW. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220.
-
(1994)
Nature
, vol.371
, pp. 215-220
-
-
Charlesworth, B.1
Sniegowski, P.2
-
43
-
-
0028711866
-
Drosophila P element: Transposition, regulation and evolution
-
Coen D, Lemaitre B, Delattre M, Quesneville H, Ronsseray S, Simonelig M, Higuet D, Lehmann M, Montchamp C, Nouaud D, et al. 1994. Drosophila P element: Transposition, regulation and evolution. Genetica 93: 61-78.
-
(1994)
Genetica
, vol.93
, pp. 61-78
-
-
Coen, D.1
Lemaitre, B.2
Delattre, M.3
Quesneville, H.4
Ronsseray, S.5
Simonelig, M.6
Higuet, D.7
Lehmann, M.8
Montchamp, C.9
Nouaud, D.10
-
44
-
-
0036263105
-
Population, evolutionary and genomic consequences of interference selection
-
Comeron JM, Kreitman M. 2002. Population, evolutionary and genomic consequences of interference selection. Genetics 161: 389-410.
-
(2002)
Genetics
, vol.161
, pp. 389-410
-
-
Comeron, J.M.1
Kreitman, M.2
-
45
-
-
44349104241
-
An endogenous small interfering RNA pathway in Drosophila
-
Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, Dus M, Perrimon N, Kellis M, Wohlschlegel JA, Sachidanandam R, et al. 2008. An endogenous small interfering RNA pathway in Drosophila. Nature 453: 798-802.
-
(2008)
Nature
, vol.453
, pp. 798-802
-
-
Czech, B.1
Malone, C.D.2
Zhou, R.3
Stark, A.4
Schlingeheyde, C.5
Dus, M.6
Perrimon, N.7
Kellis, M.8
Wohlschlegel, J.A.9
Sachidanandam, R.10
-
46
-
-
0037183880
-
A single p450 allele associated with insecticide resistance in Drosophila
-
Daborn PJ, Yen JL, Bogwitz MR, Le Goff G, Feil E, Jeffers S, Tijet N, Perry T, Heckel D, Batterham P, et al. 2002. A single p450 allele associated with insecticide resistance in Drosophila. Science 297: 2253-2256.
-
(2002)
Science
, vol.297
, pp. 2253-2256
-
-
Daborn, P.J.1
Yen, J.L.2
Bogwitz, M.R.3
Le Goff, G.4
Feil, E.5
Jeffers, S.6
Tijet, N.7
Perry, T.8
Heckel, D.9
Batterham, P.10
-
47
-
-
46149092009
-
Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline
-
Das PP, Bagijn MP, Goldstein LD,Woolford JR, Lehrbach NJ, Sapetschnig A, Buhecha HR, Gilchrist MJ, Howe KL, Stark R, et al. 2008. Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. Mol Cell 31: 79-90.
-
(2008)
Mol Cell
, vol.31
, pp. 79-90
-
-
Das, P.P.1
Bagijn, M.P.2
Goldstein, L.D.3
Woolford, J.R.4
Lehrbach, N.J.5
Sapetschnig, A.6
Buhecha, H.R.7
Gilchrist, M.J.8
Howe, K.L.9
Stark, R.10
-
48
-
-
45249113294
-
In Drosophila melanogaster the COM locus directs the somatic silencing of two retrotransposons through both Piwi-dependent and -independent pathways
-
doi: 10.1371/journal.pone.0001526
-
Desset S, Buchon N, Meignin C, Coiffet M, Vaury C. 2008. In Drosophila melanogaster the COM locus directs the somatic silencing of two retrotransposons through both Piwi-dependent and -independent pathways. PLoS One 3: e1526. doi: 10.1371/journal.pone.0001526.
-
(2008)
PLoS One
, vol.3
-
-
Desset, S.1
Buchon, N.2
Meignin, C.3
Coiffet, M.4
Vaury, C.5
-
49
-
-
33750465172
-
The fate of transposable elements in asexual populations
-
Dolgin ES, Charlesworth B. 2006. The fate of transposable elements in asexual populations. Genetics 174: 817-827.
-
(2006)
Genetics
, vol.174
, pp. 817-827
-
-
Dolgin, E.S.1
Charlesworth, B.2
-
50
-
-
45849088092
-
The effects of recombination rate on the distribution and abundance of transposable elements
-
Dolgin ES, Charlesworth B. 2008. The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178: 2169-2177.
-
(2008)
Genetics
, vol.178
, pp. 2169-2177
-
-
Dolgin, E.S.1
Charlesworth, B.2
-
51
-
-
47149117454
-
-
Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
-
-
-
52
-
-
0009102352
-
The fitness consequences of P-element insertion in Drosophila melanogaster
-
Eanes WF, Wesley D, Hey J, Houle D, Ajioka JW. 1987. The fitness consequences of P-element insertion in Drosophila melanogaster. Genet Res 52: 17-26.
-
(1987)
Genet Res
, vol.52
, pp. 17-26
-
-
Eanes, W.F.1
Wesley, D.2
Hey, J.3
Houle, D.4
Ajioka, J.W.5
-
53
-
-
0024298633
-
P-M hybrid dysgenesis does not mobilize other transposable element families in D. melanogaster
-
Eggleston WB, Johnson-Schlitz DM, Engels WR. 1988. P-M hybrid dysgenesis does not mobilize other transposable element families in D. melanogaster. Nature 331: 368-370.
-
(1988)
Nature
, vol.331
, pp. 368-370
-
-
Eggleston, W.B.1
Johnson-Schlitz, D.M.2
Engels, W.R.3
-
54
-
-
0023058707
-
On the evolution and population genetics of hybriddysgenesis-causing transposable elements in Drosophila
-
Engels WR. 1986. On the evolution and population genetics of hybriddysgenesis-causing transposable elements in Drosophila. Philos Trans R Soc Lond B Biol Sci 312: 205-215.
-
(1986)
Philos Trans R Soc Lond B Biol Sci
, vol.312
, pp. 205-215
-
-
Engels, W.R.1
-
55
-
-
34547115664
-
Highthroughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
doi: 10.1371/journal.pone. 0000219
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, et al. 2007. Highthroughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes. PLoS One 2: e219. doi: 10.1371/journal.pone. 0000219.
-
(2007)
PLoS One
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
-
56
-
-
0027030615
-
Transposable elements
-
Finnegan DJ. 1992. Transposable elements. Curr Opin Genet Dev 2: 861-867.
-
(1992)
Curr Opin Genet Dev
, vol.2
, pp. 861-867
-
-
Finnegan, D.J.1
-
57
-
-
44449096738
-
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
-
Ghildiyal M, Seitz H, Horwich MD, Li C, Du T, Lee S, Xu J, Kittler EL, Zapp ML,Weng Z, et al. 2008. Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science 320: 1077-1081.
-
(2008)
Science
, vol.320
, pp. 1077-1081
-
-
Ghildiyal, M.1
Seitz, H.2
Horwich, M.D.3
Li, C.4
Du, T.5
Lee, S.6
Xu, J.7
Kittler, E.L.8
Zapp, M.L.9
Weng, Z.10
-
58
-
-
39949083375
-
Conserved themes in small-RNA-mediated transposon control
-
Girard A, Hannon GJ. 2008. Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18: 136-148.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 136-148
-
-
Girard, A.1
Hannon, G.J.2
-
59
-
-
54949129791
-
High rate of recent transposable element-induced adaptation in Drosophila melanogaster
-
doi: 10.1371/journal.pbio.0060251
-
Gonzalez J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. 2008. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. PLoS Biol 6: e251. doi: 10.1371/journal.pbio.0060251.
-
(2008)
PLoS Biol
, vol.6
-
-
Gonzalez, J.1
Lenkov, K.2
Lipatov, M.3
Macpherson, J.M.4
Petrov, D.A.5
-
60
-
-
60149111297
-
Inferring the strength of selection in Drosophila under complex demographic models
-
Gonzalez J, Macpherson JM, Messer PW, Petrov DA. 2009. Inferring the strength of selection in Drosophila under complex demographic models. Mol Biol Evol 26: 513-526.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 513-526
-
-
Gonzalez, J.1
Macpherson, J.M.2
Messer, P.W.3
Petrov, D.A.4
-
61
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interactingRNAs in animals
-
Grimson A, Srivastava M, Fahey B,Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP. 2008. Early origins and evolution of microRNAs and Piwi-interactingRNAs in animals.Nature 455: 1193-1197.
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
King, N.6
Degnan, B.M.7
Rokhsar, D.S.8
Bartel, D.P.9
-
62
-
-
0025212268
-
Transposition rates of movable genetic elements in Drosophila melanogaster
-
Harada K, Yukuhiro K, Mukai T. 1990. Transposition rates of movable genetic elements in Drosophila melanogaster. Proc Natl Acad Sci 87: 3248-3252.
-
(1990)
Proc Natl Acad Sci
, vol.87
, pp. 3248-3252
-
-
Harada, K.1
Yukuhiro, K.2
Mukai, T.3
-
63
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill WG, Robertson A. 1966. The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
-
(1966)
Genet Res
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
64
-
-
0029744396
-
Chromosomal distribution of transposable elements in Drosophila melanogaster: Test of the ectopic recombination model for maintenance of insertion site number
-
Hoogland C, Biemont C. 1996. Chromosomal distribution of transposable elements in Drosophila melanogaster: Test of the ectopic recombination model for maintenance of insertion site number. Genetics 144: 197-204.
-
(1996)
Genetics
, vol.144
, pp. 197-204
-
-
Hoogland, C.1
Biemont, C.2
-
65
-
-
0019345054
-
Derivation-dependent distribution of insertion sites for a Drosophila transposon
-
Ising G, Block K. 1981. Derivation-dependent distribution of insertion sites for a Drosophila transposon. Cold Spring Harb SympQuant Biol 45: 527-544.
-
(1981)
Cold Spring Harb SympQuant Biol
, vol.45
, pp. 527-544
-
-
Ising, G.1
Block, K.2
-
66
-
-
0029082246
-
Defective I elements introduced into Drosophila as transgenes can regulate reactivity and prevent I-R hybrid dysgenesis
-
Jensen S, Cavarec L, Gassama MP, Heidmann T. 1995. Defective I elements introduced into Drosophila as transgenes can regulate reactivity and prevent I-R hybrid dysgenesis. Mol Gen Genet 248: 381-390.
-
(1995)
Mol Gen Genet
, vol.248
, pp. 381-390
-
-
Jensen, S.1
Cavarec, L.2
Gassama, M.P.3
Heidmann, T.4
-
67
-
-
0036861669
-
Regulation of I-transposon activity in Drosophila: Evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements
-
Jensen S, Gassama MP, Dramard X, Heidmann T. 2002. Regulation of I-transposon activity in Drosophila: Evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements. Genetics 162: 1197-1209.
-
(2002)
Genetics
, vol.162
, pp. 1197-1209
-
-
Jensen, S.1
Gassama, M.P.2
Dramard, X.3
Heidmann, T.4
-
68
-
-
57749177443
-
RNA-based gene duplication: Mechanistic and evolutionary insights
-
Kaessmann H, Vinckenbosch N, Long M. 2009. RNA-based gene duplication: Mechanistic and evolutionary insights. Nat Rev Genet 10: 19-31.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
69
-
-
0031906250
-
Su(Ste) diverged tandem repeats in a Y chromosome of Drosophila melanogaster are transcribed and variously processed
-
Kalmykova AI, Dobritsa AA, Gvozdev VA. 1998. Su(Ste) diverged tandem repeats in a Y chromosome of Drosophila melanogaster are transcribed and variously processed. Genetics 148: 243-249.
-
(1998)
Genetics
, vol.148
, pp. 243-249
-
-
Kalmykova, A.I.1
Dobritsa, A.A.2
Gvozdev, V.A.3
-
70
-
-
0012341115
-
The transposable elements of the Drosophila melanogaster euchromatin: A genomics perspective
-
RESEARCH0084. doi: 10.1186/gb-2002-3-12- research0084
-
Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, et al. 2002. The transposable elements of the Drosophila melanogaster euchromatin: A genomics perspective. Genome Biol 3: RESEARCH0084. doi: 10.1186/gb-2002-3-12- research0084.
-
(2002)
Genome Biol
, vol.3
-
-
Kaminker, J.S.1
Bergman, C.M.2
Kronmiller, B.3
Carlson, J.4
Svirskas, R.5
Patel, S.6
Frise, E.7
Wheeler, D.A.8
Lewis, S.E.9
Rubin, G.M.10
-
71
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
KazazianHHJr. 2004. Mobile elements: Drivers of genome evolution. Science 303: 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
KazazianHHJr1
-
72
-
-
0036226603
-
BLAT - the BLAST-like alignment tool
-
Kent WJ. 2002. BLAT - the BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
73
-
-
0020583913
-
Hybrid dysgenesis in Drosophila melanogaster: Factors affecting chromosomal contamination in the P-M system
-
Kidwell MG. 1983. Hybrid dysgenesis in Drosophila melanogaster: Factors affecting chromosomal contamination in the P-M system. Genetics 104: 317-341.
-
(1983)
Genetics
, vol.104
, pp. 317-341
-
-
Kidwell, M.G.1
-
74
-
-
0034889359
-
Transposon-induced hotspots for genomic instability
-
Kidwell MG, Holyoake AJ. 2001. Transposon-induced hotspots for genomic instability. Genome Res 11: 1321-1322.
-
(2001)
Genome Res
, vol.11
, pp. 1321-1322
-
-
Kidwell, M.G.1
Holyoake, A.J.2
-
75
-
-
34548784928
-
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
-
Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, Tuschl T, Gvozdev VA. 2007. Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res 35: 5430-5438.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5430-5438
-
-
Klenov, M.S.1
Lavrov, S.A.2
Stolyarenko, A.D.3
Ryazansky, S.S.4
Aravin, A.A.5
Tuschl, T.6
Gvozdev, V.A.7
-
76
-
-
0020560127
-
Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
-
Kreitman M. 1983. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304: 412-417.
-
(1983)
Nature
, vol.304
, pp. 412-417
-
-
Kreitman, M.1
-
77
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
78
-
-
0020966007
-
Transposable elements in Mendelian populations. I. A theory
-
Langley CH, Brookfield JFY, Kaplan NL. 1983. Transposable elements in Mendelian populations. I. A theory. Genetics 104: 457-471.
-
(1983)
Genetics
, vol.104
, pp. 457-471
-
-
Langley, C.H.1
Brookfield, J.F.Y.2
Kaplan, N.L.3
-
79
-
-
0024210911
-
On the role of unequal exchange in the containment of transposable element copy number
-
Langley CH, Montgomery E, Hudson R, Kaplan N, Charlesworth B. 1988. On the role of unequal exchange in the containment of transposable element copy number. Genet Res 52: 223-235.
-
(1988)
Genet Res
, vol.52
, pp. 223-235
-
-
Langley, C.H.1
Montgomery, E.2
Hudson, R.3
Kaplan, N.4
Charlesworth, B.5
-
80
-
-
33750461976
-
Population genetics models of competition between transposable element subfamilies
-
Le Rouzic A, Capy P. 2006. Population genetics models of competition between transposable element subfamilies. Genetics 174: 785-793.
-
(2006)
Genetics
, vol.174
, pp. 785-793
-
-
Le Rouzic, A.1
Capy, P.2
-
81
-
-
24644515295
-
Models of the population genetics of transposable elements
-
Le Rouzic A, Deceliere G. 2005. Models of the population genetics of transposable elements. Genet Res 85: 171-181.
-
(2005)
Genet Res
, vol.85
, pp. 171-181
-
-
Le Rouzic, A.1
Deceliere, G.2
-
82
-
-
37649005250
-
Long-term evolution of transposable elements
-
Le Rouzic A, Boutin TS, Capy P. 2007. Long-term evolution of transposable elements. Proc Natl Acad Sci 104: 19375-19380.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19375-19380
-
-
Le Rouzic, A.1
Boutin, T.S.2
Capy, P.3
-
83
-
-
65549118489
-
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
-
Li C, Vagin VV, Lee S, Xu J, Ma S, Xi H, Seitz H, Horwich MD, Syrzycka M, Honda BM, et al. 2009. Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137: 509-521.
-
(2009)
Cell
, vol.137
, pp. 509-521
-
-
Li, C.1
Vagin, V.V.2
Lee, S.3
Xu, J.4
Ma, S.5
Xi, H.6
Seitz, H.7
Horwich, M.D.8
Syrzycka, M.9
Honda, B.M.10
-
84
-
-
68549085526
-
A novel epigenetic mechanism in Drosophila somatic cells mediated by Piwi and piRNAs
-
Lin H, Yin H. 2008. A novel epigenetic mechanism in Drosophila somatic cells mediated by Piwi and piRNAs. Cold Spring Harb Symp Quant Biol 73: 273-281.
-
(2008)
Cold Spring Harb Symp Quant Biol
, vol.73
, pp. 273-281
-
-
Lin, H.1
Yin, H.2
-
85
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe CB, Bejerano G, Haussler D. 2007. Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci 104: 8005-8010.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
86
-
-
48249150513
-
Adaptive evolution of newly emerged micro-RNA genes in Drosophila
-
Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. 2008a. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol Biol Evol 25: 929-938.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 929-938
-
-
Lu, J.1
Fu, Y.2
Kumar, S.3
Shen, Y.4
Zeng, K.5
Xu, A.6
Carthew, R.7
Wu, C.I.8
-
87
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. 2008b. The birth and death of microRNA genes in Drosophila. Nat Genet 40: 351-355.
-
(2008)
Nat Genet
, vol.40
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Wu, Q.3
Kumar, S.4
He, B.5
Shi, S.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.I.9
-
88
-
-
0024509557
-
Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster
-
Lyckegaard EM, Clark AG. 1989. Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci 86: 1944-1948.
-
(1989)
Proc Natl Acad Sci
, vol.86
, pp. 1944-1948
-
-
Lyckegaard, E.M.1
Clark, A.G.2
-
89
-
-
0026525956
-
Effects of P element insertions on quantitative traits in Drosophila melanogaster
-
Mackay TF, Lyman RF, Jackson MS. 1992. Effects of P element insertions on quantitative traits in Drosophila melanogaster. Genetics 130: 315-332.
-
(1992)
Genetics
, vol.130
, pp. 315-332
-
-
Mackay, T.F.1
Lyman, R.F.2
Jackson, M.S.3
-
90
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone CD, Hannon GJ. 2009. Small RNAs as guardians of the genome. Cell 136: 656-668.
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
91
-
-
65549105694
-
Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
-
Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, Sachidanandam R, Hannon GJ. 2009. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535.
-
(2009)
Cell
, vol.137
, pp. 522-535
-
-
Malone, C.D.1
Brennecke, J.2
Dus, M.3
Stark, A.4
McCombie, W.R.5
Sachidanandam, R.6
Hannon, G.J.7
-
92
-
-
0034124187
-
Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster
-
Maside X, Assimacopoulos S, Charlesworth B. 2000. Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster. Genet Res 75: 275-284.
-
(2000)
Genet Res
, vol.75
, pp. 275-284
-
-
Maside, X.1
Assimacopoulos, S.2
Charlesworth, B.3
-
93
-
-
0034765945
-
Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data
-
Maside X, Bartolome C, Assimacopoulos S, Charlesworth B. 2001. Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data. Genet Res 78: 121-136.
-
(2001)
Genet Res
, vol.78
, pp. 121-136
-
-
Maside, X.1
Bartolome, C.2
Assimacopoulos, S.3
Charlesworth, B.4
-
94
-
-
0031441380
-
LTR retrotransposons and the evolution of eukaryotic enhancers
-
McDonald JF, Matyunina LV, Wilson S, Jordan IK, Bowen NJ, Miller WJ. 1997. LTR retrotransposons and the evolution of eukaryotic enhancers. Genetica 100: 3-13.
-
(1997)
Genetica
, vol.100
, pp. 3-13
-
-
McDonald, J.F.1
Matyunina, L.V.2
Wilson, S.3
Jordan, I.K.4
Bowen, N.J.5
Miller, W.J.6
-
95
-
-
34249011855
-
The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis
-
Mevel-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A. 2007. The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis. Genetics 175: 1615-1624.
-
(2007)
Genetics
, vol.175
, pp. 1615-1624
-
-
Mevel-Ninio, M.1
Pelisson, A.2
Kinder, J.3
Campos, A.R.4
Bucheton, A.5
-
96
-
-
0000293262
-
Transposable elements in Mendelian populations. II. Distribution of three COPIA-like elements in a natural population of Drosophila melanogaster
-
Montgomery EA, Langley CH. 1983. Transposable elements in Mendelian populations. II. Distribution of three COPIA-like elements in a natural population of Drosophila melanogaster. Genetics 104: 473-483.
-
(1983)
Genetics
, vol.104
, pp. 473-483
-
-
Montgomery, E.A.1
Langley, C.H.2
-
97
-
-
0023284059
-
A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster
-
Montgomery E, Charlesworth B, Langley CH. 1987. A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genet Res 49: 31-41.
-
(1987)
Genet Res
, vol.49
, pp. 31-41
-
-
Montgomery, E.1
Charlesworth, B.2
Langley, C.H.3
-
98
-
-
8444229706
-
Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies
-
Neafsey DE, Blumenstiel JP, Hartl DL. 2004. Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies. Mol Biol Evol 21: 2310-2318.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2310-2318
-
-
Neafsey, D.E.1
Blumenstiel, J.P.2
Hartl, D.L.3
-
99
-
-
34250669989
-
Molecular mechanisms of RNA silencing by siRNA, miRNA and piRNA]
-
Nishida KM, Siomi MC. 2006. [Molecular mechanisms of RNA silencing by siRNA, miRNA and piRNA]. Tanpakushitsu Kakusan Koso 51: 2450-2455.
-
(2006)
Tanpakushitsu Kakusan Koso
, vol.51
, pp. 2450-2455
-
-
Nishida, K.M.1
Siomi, M.C.2
-
100
-
-
35548991887
-
Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad
-
Nishida KM, Saito K, Mori T, Kawamura Y, Nagami-Okada T, Inagaki S, Siomi H, Siomi MC. 2007. Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad. RNA 13: 1911-1922.
-
(2007)
RNA
, vol.13
, pp. 1911-1922
-
-
Nishida, K.M.1
Saito, K.2
Mori, T.3
Kawamura, Y.4
Nagami-Okada, T.5
Inagaki, S.6
Siomi, H.7
Siomi, M.C.8
-
101
-
-
0033288823
-
Sure facts, speculations, and open questions about the evolution of transposable element copy number
-
Nuzhdin SV. 1999. Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107: 129-137.
-
(1999)
Genetica
, vol.107
, pp. 129-137
-
-
Nuzhdin, S.V.1
-
102
-
-
0028306352
-
Direct determination of retrotransposon transposition rates in Drosophila melanogaster
-
Nuzhdin SV, Mackay TF. 1994. Direct determination of retrotransposon transposition rates in Drosophila melanogaster. Genet Res 63: 139-144.
-
(1994)
Genet Res
, vol.63
, pp. 139-144
-
-
Nuzhdin, S.V.1
Mackay, T.F.2
-
103
-
-
0029181962
-
The genomic rate of transposable element movement in Drosophila melanogaster
-
Nuzhdin SV, Mackay TF. 1995. The genomic rate of transposable element movement in Drosophila melanogaster. Mol Biol Evol 12: 180-181.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 180-181
-
-
Nuzhdin, S.V.1
Mackay, T.F.2
-
104
-
-
0031469985
-
Accumulation of transposable elements in laboratory lines of Drosophila melanogaster
-
Nuzhdin SV, Pasyukova EG, Mackay TF. 1997. Accumulation of transposable elements in laboratory lines of Drosophila melanogaster. Genetica 100: 167-175.
-
(1997)
Genetica
, vol.100
, pp. 167-175
-
-
Nuzhdin, S.V.1
Pasyukova, E.G.2
Mackay, T.F.3
-
105
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta T. 1973. Slightly deleterious mutant substitutions in evolution. Nature 246: 96-98.
-
(1973)
Nature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
106
-
-
0020519534
-
Theoretical study on the accumulation of selfish DNA
-
Ohta T. 1983. Theoretical study on the accumulation of selfish DNA. Genet Res 41: 1-15.
-
(1983)
Genet Res
, vol.41
, pp. 1-15
-
-
Ohta, T.1
-
107
-
-
3242676911
-
Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness
-
Pasyukova EG, Nuzhdin SV, Morozova TV, Mackay TF. 2004. Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness. J Hered 95: 284-290.
-
(2004)
J Hered
, vol.95
, pp. 284-290
-
-
Pasyukova, E.G.1
Nuzhdin, S.V.2
Morozova, T.V.3
Mackay, T.F.4
-
108
-
-
33846810192
-
A novel repeatassociated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary
-
Pelisson A, Sarot E, Payen-Groschene G, Bucheton A. 2007. A novel repeatassociated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary. J Virol 81: 1951-1960.
-
(2007)
J Virol
, vol.81
, pp. 1951-1960
-
-
Pelisson, A.1
Sarot, E.2
Payen-Groschene, G.3
Bucheton, A.4
-
109
-
-
0038247887
-
Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila
-
Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE. 2003. Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol Biol Evol 20: 880-892.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 880-892
-
-
Petrov, D.A.1
Aminetzach, Y.T.2
Davis, J.C.3
Bensasson, D.4
Hirsh, A.E.5
-
110
-
-
0026749828
-
I-R hybrid dysgenesis in Drosophila melanogaster. Use of in situ hybridization to show the association of I factor DNA with induced sex-linked recessive lethals
-
Proust J, Prudhommeau C, Ladeveze V, Gotteland M, Fontyne-Branchard MC. 1992. I-R hybrid dysgenesis in Drosophila melanogaster. Use of in situ hybridization to show the association of I factor DNA with induced sex-linked recessive lethals. Mutat Res 268: 265-285.
-
(1992)
Mutat Res
, vol.268
, pp. 265-285
-
-
Proust, J.1
Prudhommeau, C.2
Ladeveze, V.3
Gotteland, M.4
Fontyne-Branchard, M.C.5
-
111
-
-
0031451224
-
A simulation of P element horizontal transfer in Drosophila
-
Quesneville H, Anxolabehere D. 1997. A simulation of P element horizontal transfer in Drosophila. Genetica 100: 295-307.
-
(1997)
Genetica
, vol.100
, pp. 295-307
-
-
Quesneville, H.1
Anxolabehere, D.2
-
112
-
-
0344936621
-
Dynamics of transposable elements in metapopulations: A model of P element invasion in Drosophila
-
Quesneville H, Anxolabehere D. 1998. Dynamics of transposable elements in metapopulations: A model of P element invasion in Drosophila. Theor Popul Biol 54: 175-193.
-
(1998)
Theor Popul Biol
, vol.54
, pp. 175-193
-
-
Quesneville, H.1
Anxolabehere, D.2
-
113
-
-
28844444029
-
Combined evidence annotation of transposable elements in genome sequences
-
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D. 2005. Combined evidence annotation of transposable elements in genome sequences. PLoS Comput Biol 1: 166-175.
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 166-175
-
-
Quesneville, H.1
Bergman, C.M.2
Andrieu, O.3
Autard, D.4
Nouaud, D.5
Ashburner, M.6
Anxolabehere, D.7
-
114
-
-
0033990048
-
Primer3 on theWWWfor general users and for biologist programmers
-
Rozen S, Skaletsky H. 2000. Primer3 on theWWWfor general users and for biologist programmers. Methods Mol Biol 132: 365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
115
-
-
75649094779
-
Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster
-
doi: 10.1093/gbe/ evp048
-
Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman ER, Carneiro M, Marth GT, Hartl DL, Clark AG. 2009. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biol Evol 1: 439-455. doi: 10.1093/gbe/ evp048.
-
(2009)
Genome Biol E
, vol.1
, pp. 439-455
-
-
Sackton, T.B.1
Kulathinal, R.J.2
Bergman, C.M.3
Quinlan, A.R.4
Dopman, E.R.5
Carneiro, M.6
Marth, G.T.7
Hartl, D.L.8
Clark, A.G.9
-
116
-
-
1942453393
-
Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene
-
Sarot E, Payen-Groschene G, Bucheton A, Pelisson A. 2004. Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene. Genetics 166: 1313-1321.
-
(2004)
Genetics
, vol.166
, pp. 1313-1321
-
-
Sarot, E.1
Payen-Groschene, G.2
Bucheton, A.3
Pelisson, A.4
-
117
-
-
1242274636
-
Strong selective sweep associated with a transposon insertion in Drosophila simulans
-
Schlenke TA, Begun DJ. 2004. Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci 101: 1626-1631.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 1626-1631
-
-
Schlenke, T.A.1
Begun, D.J.2
-
118
-
-
0031797308
-
The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster
-
Schug MD, Hutter CM,Wetterstrand KA, Gaudette MS, Mackay TF, Aquadro CF. 1998. The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster. Mol Biol Evol 15: 1751-1760.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1751-1760
-
-
Schug, M.D.1
Hutter, C.M.2
Wetterstrand, K.A.3
Gaudette, M.S.4
Mackay, T.F.5
Aquadro, C.F.6
-
119
-
-
44349122539
-
Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution
-
Siomi H, Siomi MC. 2008. Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution. Curr Opin Genet Dev 18: 181-187.
-
(2008)
Curr Opin Genet Dev
, vol.18
, pp. 181-187
-
-
Siomi, H.1
Siomi, M.C.2
-
120
-
-
35549001303
-
Mutational interference and the progression of Muller's ratchet when mutations have a broad range of deleterious effects
-
Soderberg RJ, Berg OG. 2007. Mutational interference and the progression of Muller's ratchet when mutations have a broad range of deleterious effects. Genetics 177: 971-986.
-
(2007)
Genetics
, vol.177
, pp. 971-986
-
-
Soderberg, R.J.1
Berg, O.G.2
-
121
-
-
0029095623
-
Studies on the transposition rates of mobile genetic elements in a natural population of Drosophila melanogaster
-
Suh DS, Choi EH, Yamazaki T, Harada K. 1995. Studies on the transposition rates of mobile genetic elements in a natural population of Drosophila melanogaster. Mol Biol Evol 12: 748-758.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 748-758
-
-
Suh, D.S.1
Choi, E.H.2
Yamazaki, T.3
Harada, K.4
-
122
-
-
70350238350
-
The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect
-
Thomson T, Lin H. 2009. The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect. Annu Rev Cell Dev Biol 25: 355-376.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 355-376
-
-
Thomson, T.1
Lin, H.2
-
123
-
-
33746502166
-
A distinct small RNA pathway silences selfish genetic elements in the germline
-
Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324.
-
(2006)
Science
, vol.313
, pp. 320-324
-
-
Vagin, V.V.1
Sigova, A.2
Li, C.3
Seitz, H.4
Gvozdev, V.5
Zamore, P.D.6
-
124
-
-
43549088103
-
Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
-
doi: 10.1186/gb-2008-9-2-r39
-
Yang HP, Barbash DA. 2008. Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol 9: R39. doi: 10.1186/gb-2008-9-2-r39.
-
(2008)
Genome Biol
, vol.9
-
-
Yang, H.P.1
Barbash, D.A.2
-
125
-
-
38949119483
-
Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS
-
doi: 10.1371/journal.pgen.0040003
-
Yang S, Arguello JR, Li X, Ding Y, Zhou Q, Chen Y, Zhang Y, Zhao R, Brunet F, Peng L, et al. 2008. Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 4: e3. doi: 10.1371/journal.pgen.0040003.
-
(2008)
Genet
, vol.4
-
-
Yang, S.1
Arguello, J.R.2
Li, X.3
Ding, Y.4
Zhou, Q.5
Chen, Y.6
Zhang, Y.7
Zhao, R.8
Brunet, F.9
Peng, L.10
-
126
-
-
36048937264
-
An epigenetic activation role of Piwi and a Piwiassociated piRNA in Drosophila melanogaster
-
Yin H, Lin H. 2007. An epigenetic activation role of Piwi and a Piwiassociated piRNA in Drosophila melanogaster. Nature 450: 304-308.
-
(2007)
Nature
, vol.450
, pp. 304-308
-
-
Yin, H.1
Lin, H.2
|