SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis

EMBO Journal

Volumn 20, Issue 8, 2001, Pages 2069-2077

  Dalmay, Tamas ^a   Horsefield, Rob ^a   Braunstein, Thomas Hartig ^b   Baulcombe, David C ^a  

^a SAINSBURY LABORATORY   (United Kingdom)

^b DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

Author keywords

Double stranded RNA; Nonsense mediated decay; RNA degradation; RNAi; Virus resistance

Indexed keywords

RNA HELICASE; RNA POLYMERASE; SDE3 PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; CAENORHABDITIS ELEGANS; DROSOPHILA; GENE LOCUS; GENE SILENCING; HUMAN; NUCLEOTIDE SEQUENCE; PLANT VIRUS; PRIORITY JOURNAL; RNA DEGRADATION; TOBACCO RATTLE VIRUS; TRANSGENE;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMOSOME MAPPING; CUCUMOVIRUS; GENE SILENCING; MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLANT PROTEINS; PLANT VIRUSES; PLANTS, GENETICALLY MODIFIED; RNA HELICASES; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA VIRUSES; RNA, DOUBLE-STRANDED; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; CAENORHABDITIS ELEGANS; EMBRYOPHYTA; NICOTIANA TABACUM; TOBACCO RATTLE VIRUS;

EID: 0035901497     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/20.8.2069     Document Type: Article

References (52)

1. Basic local alignment search tool
2. Transcriptional and post-transcriptional silencing of rodent α1(I) collagen by a homologous transcriptionally self-silenced transgene
3. Fast forward genetics based on virus-induced gene silencing
4. Infectious in vitro transcripts from amplified cDNAs of the Y and Kin strains of cucumber mosaic virus
5. Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana
6. Virus-induced silencing of a plant cellulose synthase gene
7. Gene silencing in worms and fungi
8. Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana
9. Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase
10. Post-transcriptional gene silencing in Neurospora by a RecQ DNA helicase
11. Transgene silencing of the Al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation
12. Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing
13. An RNA-dependent RNA polymerase gene in Arabidopsis is required for post-transcriptional gene silencing mediated by a transgene but not by a virus
14. A link between RNA interference and nonsense-mediated decay in Caenorhabditis elegans
15. AGO1, QDE-2 and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi and RNA interference in animals
16. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
17. Consecutive inactivation of both alleles of the gb110 gene has no effect on the proliferation and differentiation of mouse embryonic stem cells
18. A novel species of small antisense RNA in post-transcriptional gene silencing
19. Infectious RNA produced by in vitro transcription of a full-length tobacco rattle virus RNA-1 cDNA
20. An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cell extracts
21. Upf1p, Nmd2p and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
22. pGreen: A versatile and flexible binary Ti Vector for Agrobacterium-mediated plant transformation
23. Taming of transposable elements by homology-dependent gene silencing
24. RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing
25. A genetic link between co-suppression and RNA interference in C. elegans
26. mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD
27. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers
28. A new group of putative RNA helicases
29. Listening to the silent genes: Transgene silencing, gene regulation and pathogen control
30. Gene products that promote mRNA turnover in Saccharomyces cerevisiae
31. Are DEAD-box proteins becoming respectable helicases?
32. Structure and expression of a gene encoding a putative GTP-binding protein identified by provirus integration in a transgenic mouse strain
33. Arabidopsis SGS2 and SGS3 genes are required for post-transcriptional gene silencing and natural virus resistance
34. Homology-dependent resistance: Transgenic virus resistance in plants related to homology-dependent gene silencing
35. SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
36. Transgenes are dispensable for the RNA degradation step of cosuppression
37. Cosuppression in Drosophila: Gene silencing of alcohol dehydrogenase by white-ADH transgenes is Polycomb dependent
38. The silence of the genes
39. A similarity between viral defense and gene silencing in plants
40. Gene silencing without DNA: RNA-mediated cross protection between viruses
41. Tobacco rattle virus as a vector for analysis of gene function by silencing
42. Initiation and maintenance of virus-induced gene silencing
43. EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans
44. Gene expression - Total silencing by intronspliced hairpin RNAs
45. The rde-1 gene, RNA interference and transposon silencing in C. elegans
46. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
47. Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses
48. A viral movement protein prevents systemic spread of the gene silencing signal in Nicotiana benthamiana
49. Specific interference with gene function by double-stranded RNA in early mouse development
50. Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH-box RNA helicase
51. RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals