-
1
-
-
25444482839
-
PathwayVoyager: Pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database
-
Altermann, E., and Klaenhammer, T.R. (2005) PathwayVoyager: Pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. BMC Genomics 6, 60.
-
(2005)
BMC Genomics
, vol.6
, pp. 60
-
-
Altermann, E.1
Klaenhammer, T.R.2
-
2
-
-
17644389315
-
Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM
-
Altermann, E., Russell, W.M., Azcarate-Peril, M.A., Barrangou, R., Buck, B.L., McAuliffe, O., Souther, N., Dobson, A., Duong, T., Callanan, M., Lick, S., Hamrick, A., Cano, R., and Klaenhammer, T.R. (2005) Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc Natl Acad Sci USA 102, 3906-3912.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3906-3912
-
-
Altermann, E.1
Russell, W.M.2
Azcarate-Peril, M.A.3
Barrangou, R.4
Buck, B.L.5
McAuliffe, O.6
Souther, N.7
Dobson, A.8
Duong, T.9
Callanan, M.10
Lick, S.11
Hamrick, A.12
Cano, R.13
Klaenhammer, T.R.14
-
3
-
-
46949106897
-
Insights into the role of quorum sensing in food spoilage
-
Ammor, M.S., Michaelidis, C., and Nychas, G.J. (2008) Insights into the role of quorum sensing in food spoilage. J Food Prot 71, 1510-1525.
-
(2008)
J Food Prot
, vol.71
, pp. 1510-1525
-
-
Ammor, M.S.1
Michaelidis, C.2
Nychas, G.J.3
-
4
-
-
0037073419
-
The arginine deiminase pathway in the wine lactic acid bacterium Lactobacillus hilgardii X1B: Structural and functional study of the arcABC genes
-
Arena, M.E., Manca de Nadra, M.C., and Munoz, R. (2002) The arginine deiminase pathway in the wine lactic acid bacterium Lactobacillus hilgardii X1B: Structural and functional study of the arcABC genes. Gene 301, 61-66.
-
(2002)
Gene
, vol.301
, pp. 61-66
-
-
Arena, M.E.1
Manca de Nadra, M.C.2
Munoz, R.3
-
5
-
-
0001780077
-
Lactic acid bacteria: Classification and physiology
-
ed. S. Salminen and A. von Wright. New York: Marcel Dekker, Inc
-
Axelsson, L. (1998) Lactic acid bacteria: Classification and physiology. In Lactic Acid Bacteria: Microbiology and Functional Aspects, ed. S. Salminen and A. von Wright, 1-12. New York: Marcel Dekker, Inc.
-
(1998)
In Lactic Acid Bacteria: Microbiology and Functional Aspects
, pp. 1-12
-
-
Axelsson, L.1
-
6
-
-
4644303983
-
Identification and inactivation of genetic loci involved with Lactobacillus acidophilus acid tolerance
-
Azcarate-Peril, M.A., Altermann, E., Hoover-Fitzula, R.L., Cano, R.J., and Klaenhammer, T.R. (2004) Identification and inactivation of genetic loci involved with Lactobacillus acidophilus acid tolerance. Appl Environ Microbiol 70, 5315-5322.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5315-5322
-
-
Azcarate-Peril, M.A.1
Altermann, E.2
Hoover-Fitzula, R.L.3
Cano, R.J.4
Klaenhammer, T.R.5
-
7
-
-
23944443724
-
Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus
-
Azcarate-Peril, M.A., McAuliffe, O., Altermann, E., Lick, S., Russell, W.M., and Klaenhammer, T.R. (2005) Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus. Appl Environ Microbiol 71, 5794-5804.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5794-5804
-
-
Azcarate-Peril, M.A.1
McAuliffe, O.2
Altermann, E.3
Lick, S.4
Russell, W.M.5
Klaenhammer, T.R.6
-
8
-
-
49449090704
-
Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism
-
Azcarate-Peril, M.A., Altermann, E., Goh, Y.J., Tallon, R., Sanozky-Dawes, R.B., Pfeiler, E.A., O'Flaherty, S., Buck, B.L., Dobson, A., Duong, T., Miller, M.J., Barrangou, R., and Klaenhammer, T.R. (2008) Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism. Appl Environ Microbiol 74, 4610-4625.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4610-4625
-
-
Azcarate-Peril, M.A.1
Altermann, E.2
Goh, Y.J.3
Tallon, R.4
Sanozky-Dawes, R.B.5
Pfeiler, E.A.6
O'Flaherty, S.7
Buck, B.L.8
Dobson, A.9
Duong, T.10
Miller, M.J.11
Barrangou, R.12
Klaenhammer, T.R.13
-
9
-
-
61449236351
-
Temporal gene expression and probiotic attributes of Lactobacillus acidophilus during growth in milk
-
Azcarate-Peril, M.A., Tallon, R., and Klaenhammer, T.R. (2009) Temporal gene expression and probiotic attributes of Lactobacillus acidophilus during growth in milk. J Dairy Sci 92, 870-886.
-
(2009)
J Dairy Sci
, vol.92
, pp. 870-886
-
-
Azcarate-Peril, M.A.1
Tallon, R.2
Klaenhammer, T.R.3
-
10
-
-
33645125101
-
Lactic acid bacteria associated with wine grapes from several Australian vineyards
-
Bae, S., Fleet, G.H., and Heard, G.M. (2006) Lactic acid bacteria associated with wine grapes from several Australian vineyards. J Appl Microbiol 100, 712-727.
-
(2006)
J Appl Microbiol
, vol.100
, pp. 712-727
-
-
Bae, S.1
Fleet, G.H.2
Heard, G.M.3
-
11
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D.A., and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
12
-
-
49249087430
-
Clinical aspects of Helicobacter pylori infection
-
Bartnik, W. (2008) Clinical aspects of Helicobacter pylori infection. Pol Arch Med Wewn 118, 426-430.
-
(2008)
Pol Arch Med Wewn
, vol.118
, pp. 426-430
-
-
Bartnik, W.1
-
13
-
-
0028202974
-
Lactobacillus acidophilus LA 1 binds to cultured human intestinal cell lines and inhibits cell attachment and cell invasion by enterovirulent bacteria
-
Bernet, M.F., Brassart, D., Neeser, J.R., and Servin, A.L. (1994) Lactobacillus acidophilus LA 1 binds to cultured human intestinal cell lines and inhibits cell attachment and cell invasion by enterovirulent bacteria. Gut 35, 483-489.
-
(1994)
Gut
, vol.35
, pp. 483-489
-
-
Bernet, M.F.1
Brassart, D.2
Neeser, J.R.3
Servin, A.L.4
-
14
-
-
0028363150
-
Cloning, characterization and insertional inactivation of the Lactobacillus helveticus D(-) lactate dehydrogenase gene
-
Bhowmik, T., and Steele, J.L. (1994) Cloning, characterization and insertional inactivation of the Lactobacillus helveticus D(-) lactate dehydrogenase gene. Appl Microbiol Biotechnol 41, 432-439.
-
(1994)
Appl Microbiol Biotechnol
, vol.41
, pp. 432-439
-
-
Bhowmik, T.1
Steele, J.L.2
-
15
-
-
31444449652
-
Molecular analysis of the bacterial microbiota in the human stomach
-
Bik, E.M., Eckburg, P.B., Gill, S.R., Nelson, K.E., Purdom, E.A., Francois, F., Perez-Perez, G., Blaser, M.J., and Relman, D.A. (2006) Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A 103, 732-737.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 732-737
-
-
Bik, E.M.1
Eckburg, P.B.2
Gill, S.R.3
Nelson, K.E.4
Purdom, E.A.5
Francois, F.6
Perez-Perez, G.7
Blaser, M.J.8
Relman, D.A.9
-
16
-
-
0035021812
-
The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403
-
Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S.D., and Sorokin, A. (2001) The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res 11, 731-753.
-
(2001)
Genome Res
, vol.11
, pp. 731-753
-
-
Bolotin, A.1
Wincker, P.2
Mauger, S.3
Jaillon, O.4
Malarme, K.5
Weissenbach, J.6
Ehrlich, S.D.7
Sorokin, A.8
-
17
-
-
19944414611
-
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
-
Bolotin, A., Quinquis, B., Renault, P., Sorokin, A., Ehrlich, S.D., Kulakauskas, S., Lapidus, A., Goltsman, E., Mazur, M., Pusch, G.D., Fonstein, M., Overbeek, R., Kyprides, N., Purnelle, B., Prozzi, D., Ngui, K., Masuy, D., Hancy, F., Burteau, S., Boutry, M., Delcour, J., Goffeau, A., and Hols, P. (2004) Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat Biotechnol 22, 1554-1558.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1554-1558
-
-
Bolotin, A.1
Quinquis, B.2
Renault, P.3
Sorokin, A.4
Ehrlich, S.D.5
Kulakauskas, S.6
Lapidus, A.7
Goltsman, E.8
Mazur, M.9
Pusch, G.D.10
Fonstein, M.11
Overbeek, R.12
Kyprides, N.13
Purnelle, B.14
Prozzi, D.15
Ngui, K.16
Masuy, D.17
Hancy, F.18
Burteau, S.19
Boutry, M.20
Delcour, J.21
Goffeau, A.22
Hols, P.23
more..
-
18
-
-
33744933432
-
A phase I trial with transgenic bacteria expressing interleukin-10 in Crohn' s disease
-
Braat, H., Rottiers, P., Hommes, D.W., Huyghebaert, N., Remaut, E., Remon, J.P., van Deventer, S.J., Neirynck, S., Peppelenbosch, M.P., and Steidler, L. (2006) A phase I trial with transgenic bacteria expressing interleukin-10 in Crohn' s disease. Clin Gastroenterol Hepatol 4, 754-759.
-
(2006)
Clin Gastroenterol Hepatol
, vol.4
, pp. 754-759
-
-
Braat, H.1
Rottiers, P.2
Hommes, D.W.3
Huyghebaert, N.4
Remaut, E.5
Remon, J.P.6
van Deventer, S.J.7
Neirynck, S.8
Peppelenbosch, M.P.9
Steidler, L.10
-
19
-
-
4143080620
-
Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity
-
Bruno-Barcena, J.M., Andrus, J.M., Libby, S.L., Klaenhammer, T.R., and Hassan, H.M. (2004) Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity. Appl Environ Microbiol 70, 4702-4710.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4702-4710
-
-
Bruno-Barcena, J.M.1
Andrus, J.M.2
Libby, S.L.3
Klaenhammer, T.R.4
Hassan, H.M.5
-
20
-
-
18144405758
-
Marker-free chromosomal integration of the manganese superoxide dismutase gene (sodA) from Streptococcus thermophilus into Lactobacillus gasseri
-
Bruno-Barcena, J.M., Azcarate-Peril, M.A., Klaenhammer, T.R., and Hassan, H.M. (2005) Marker-free chromosomal integration of the manganese superoxide dismutase gene (sodA) from Streptococcus thermophilus into Lactobacillus gasseri. FEMS Microbiol Lett 246, 91-101.
-
(2005)
FEMS Microbiol Lett
, vol.246
, pp. 91-101
-
-
Bruno-Barcena, J.M.1
Azcarate-Peril, M.A.2
Klaenhammer, T.R.3
Hassan, H.M.4
-
21
-
-
85153273974
-
-
J Appl Microbiol, in press
-
Buck, B.L., Azcarate-Peril, M.A., and Klaenhammer, T.R. (2009) Role of autoinducer-2 on the adhesion ability of Lactobacillus acidophilus. J Appl Microbiol, in press.
-
(2009)
Role of autoinducer-2 on the adhesion ability of Lactobacillus acidophilus
-
-
Buck, B.L.1
Azcarate-Peril, M.A.2
Klaenhammer, T.R.3
-
22
-
-
46749095142
-
Evaluation of biodiversity of lactic acid bacteria microbiota in the calf intestinal tracts
-
Busconi, M., Reggi, S., and Fogher, C. (2008) Evaluation of biodiversity of lactic acid bacteria microbiota in the calf intestinal tracts. Antonie Van Leeuwenhoek 94, 145-155.
-
(2008)
Antonie Van Leeuwenhoek
, vol.94
, pp. 145-155
-
-
Busconi, M.1
Reggi, S.2
Fogher, C.3
-
23
-
-
2442483942
-
Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation
-
Cabezon, E., Sastre, J.I., and de la Cruz, F. (1997) Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation. Mol Gen Genet 254, 400-406.
-
(1997)
Mol Gen Genet
, vol.254
, pp. 400-406
-
-
Cabezon, E.1
Sastre, J.I.2
de la Cruz, F.3
-
24
-
-
38749115890
-
Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion
-
Callanan, M., Kaleta, P., O'Callaghan, J., O'Sullivan, O., Jordan, K., McAuliffe, O., Sangrador-Vegas, A., Slattery, L., Fitzgerald, G.F., Beresford, T., and Ross, R.P. (2008) Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol 190, 727-735.
-
(2008)
J Bacteriol
, vol.190
, pp. 727-735
-
-
Callanan, M.1
Kaleta, P.2
O'Callaghan, J.3
O'Sullivan, O.4
Jordan, K.5
McAuliffe, O.6
Sangrador-Vegas, A.7
Slattery, L.8
Fitzgerald, G.F.9
Beresford, T.10
Ross, R.P.11
-
25
-
-
0036964826
-
The lactic acid bacteria: A literature survey
-
Carr, F.J., Chill, D., and Maida, N. (2002) The lactic acid bacteria: A literature survey. Crit Rev Microbiol 28, 281-370.
-
(2002)
Crit Rev Microbiol
, vol.28
, pp. 281-370
-
-
Carr, F.J.1
Chill, D.2
Maida, N.3
-
26
-
-
35348948953
-
Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis
-
Carroll, I.M., Andrus, J.M., Bruno-Barcena, J.M., Klaenhammer, T.R., Hassan, H.M., and Threadgill, D.S. (2007) Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis. Am J Physiol Gastrointest Liver Physiol 293, G729-738.
-
(2007)
Am J Physiol Gastrointest Liver Physiol
, vol.293
-
-
Carroll, I.M.1
Andrus, J.M.2
Bruno-Barcena, J.M.3
Klaenhammer, T.R.4
Hassan, H.M.5
Threadgill, D.S.6
-
27
-
-
33847673288
-
The genus Lactobacillus a genomic basis for understanding its diversity
-
Claesson, M.J., van Sinderen, D., and O'Toole, P.W. (2007) The genus Lactobacillus a genomic basis for understanding its diversity. FEMS Microbiol Lett 269, 22-28.
-
(2007)
FEMS Microbiol Lett
, vol.269
, pp. 22-28
-
-
Claesson, M.J.1
van Sinderen, D.2
O'Toole, P.W.3
-
28
-
-
33846116721
-
Horizontal transfer of virulence genes encoded on the Enterococcus faecalis pathogenicity island
-
Coburn, P.S., Baghdayan, A.S., Dolan, G.T., and Shankar, N. (2007) Horizontal transfer of virulence genes encoded on the Enterococcus faecalis pathogenicity island. Mol Microbiol 63, 530-544.
-
(2007)
Mol Microbiol
, vol.63
, pp. 530-544
-
-
Coburn, P.S.1
Baghdayan, A.S.2
Dolan, G.T.3
Shankar, N.4
-
29
-
-
34848816602
-
Invited review: Advances in starter cultures and cultured foods
-
Cogan, T.M., Beresford, T.P., Steele, J., Broadbent, J., Shah, N.P., and Ustunol, Z. (2007) Invited review: Advances in starter cultures and cultured foods. J Dairy Sci 90, 4005-4021.
-
(2007)
J Dairy Sci
, vol.90
, pp. 4005-4021
-
-
Cogan, T.M.1
Beresford, T.P.2
Steele, J.3
Broadbent, J.4
Shah, N.P.5
Ustunol, Z.6
-
30
-
-
0141789637
-
Surviving the acid test: Responses of gram-positive bacteria to low pH
-
Cotter, P.D., and Hill, C. (2003) Surviving the acid test: Responses of gram-positive bacteria to low pH. Microbiol Mol Biol Rev 67, 429-453.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 429-453
-
-
Cotter, P.D.1
Hill, C.2
-
31
-
-
3042569657
-
Bacterial genomes as new gene homes: The genealogy of ORFans in Escherichia coli
-
Daubin, V., and Ochman, H. (2004) Bacterial genomes as new gene homes: The genealogy of ORFans in Escherichia coli. Genome Res 14, 1036-1042.
-
(2004)
Genome Res
, vol.14
, pp. 1036-1042
-
-
Daubin, V.1
Ochman, H.2
-
32
-
-
10444271036
-
Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes
-
de Las Rivas, B., Marcobal, A., and Munoz, R. (2004) Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl Environ Microbiol 70, 7210-7219.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7210-7219
-
-
de Las Rivas, B.1
Marcobal, A.2
Munoz, R.3
-
33
-
-
58149527706
-
A genomic distance based on MUM indicates discontinuity between most bacterial species and genera
-
Deloger, M., El Karoui, M., and Petit, M.A. (2009) A genomic distance based on MUM indicates discontinuity between most bacterial species and genera. J Bacteriol 191, 91-99.
-
(2009)
J Bacteriol
, vol.191
, pp. 91-99
-
-
Deloger, M.1
El Karoui, M.2
Petit, M.A.3
-
34
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
Dethlefsen, L., McFall-Ngai, M., and Relman, D.A. (2007) An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449, 811-818.
-
(2007)
Nature
, vol.449
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
35
-
-
52949138730
-
Selection and use of autochthonous mixed starter for lactic acid fermentation of carrots, French beans or marrows
-
Di Cagno, R., Surico, R.F., Siragusa, S., De Angelis, M., Paradiso, A., Minervini, F., De Gara, L., and Gobbetti, M. (2008) Selection and use of autochthonous mixed starter for lactic acid fermentation of carrots, French beans or marrows. Int J Food Microbiol 127, 220-228.
-
(2008)
Int J Food Microbiol
, vol.127
, pp. 220-228
-
-
Di Cagno, R.1
Surico, R.F.2
Siragusa, S.3
De Angelis, M.4
Paradiso, A.5
Minervini, F.6
De Gara, L.7
Gobbetti, M.8
-
36
-
-
0025356864
-
Analysis of the genetic determinant for production of the peptide antibiotic nisin
-
Dodd, H.M., Horn, N., and Gasson, M.J. (1990) Analysis of the genetic determinant for production of the peptide antibiotic nisin. J Gen Microbiol 136, 555-566.
-
(1990)
J Gen Microbiol
, vol.136
, pp. 555-566
-
-
Dodd, H.M.1
Horn, N.2
Gasson, M.J.3
-
37
-
-
0026473125
-
A lactococcal expression system for engineered nisins
-
Dodd, H.M., Horn, N., Hao, Z., and Gasson, M.J. (1992) A lactococcal expression system for engineered nisins. Appl Environ Microbiol 58, 3683-3693.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3683-3693
-
-
Dodd, H.M.1
Horn, N.2
Hao, Z.3
Gasson, M.J.4
-
38
-
-
1142273332
-
Identification of lactic acid bacteria isolated from South African brandy base wines
-
du Plessis, H.W., Dicks, L.M., Pretorius, I.S., Lambrechts, M.G., and du Toit, M. (2004) Identification of lactic acid bacteria isolated from South African brandy base wines. Int J Food Microbiol 91, 19-29.
-
(2004)
Int J Food Microbiol
, vol.91
, pp. 19-29
-
-
du Plessis, H.W.1
Dicks, L.M.2
Pretorius, I.S.3
Lambrechts, M.G.4
du Toit, M.5
-
39
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg, P.B., Bik, E.M., Bernstein, C.N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S.R., Nelson, K.E., and Relman, D.A. (2005) Diversity of the human intestinal microbial flora. Science 308, 1635-1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
40
-
-
33748872127
-
Two-component signal transduction systems as key players in stress responses of lactic acid bacteria
-
El-Sharoud, W.M. (2005) Two-component signal transduction systems as key players in stress responses of lactic acid bacteria. Sci Prog 88, 203-228.
-
(2005)
Sci Prog
, vol.88
, pp. 203-228
-
-
El-Sharoud, W.M.1
-
42
-
-
0035836659
-
Complete genome sequence of an M1 strain of Streptococcus pyogenes
-
Ferretti, J.J., McShan, W.M., Ajdic, D., Savic, D.J., Savic, G., Lyon, K., Primeaux, C., Sezate, S., Suvorov, A.N., Kenton, S., Lai, H.S., Lin, S.P., Qian, Y., Jia, H.G., Najar, F.Z., Ren, Q., Zhu, H., Song, L., White, J., Yuan, X., Clifton, S.W., Roe, B.A., and McLaughlin, R. (2001) Complete genome sequence of an M1 strain of Streptococcus pyogenes. Proc Natl Acad Sci USA 98, 4658-4663.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4658-4663
-
-
Ferretti, J.J.1
McShan, W.M.2
Ajdic, D.3
Savic, D.J.4
Savic, G.5
Lyon, K.6
Primeaux, C.7
Sezate, S.8
Suvorov, A.N.9
Kenton, S.10
Lai, H.S.11
Lin, S.P.12
Qian, Y.13
Jia, H.G.14
Najar, F.Z.15
Ren, Q.16
Zhu, H.17
Song, L.18
White, J.19
Yuan, X.20
Clifton, S.W.21
Roe, B.A.22
McLaughlin, R.23
more..
-
43
-
-
28044472548
-
Pediocin-like antimicrobial peptides (class IIa bacteriocins) and their immunity proteins: Biosynthesis, structure, and mode of action
-
Fimland, G., Johnsen, L., Dalhus, B., and Nissen-Meyer, J. (2005) Pediocin-like antimicrobial peptides (class IIa bacteriocins) and their immunity proteins: Biosynthesis, structure, and mode of action. J Pept Sci 11, 688-696.
-
(2005)
J Pept Sci
, vol.11
, pp. 688-696
-
-
Fimland, G.1
Johnsen, L.2
Dalhus, B.3
Nissen-Meyer, J.4
-
44
-
-
0023991930
-
In vivo gene transfer systems and transposons
-
Fitzgerald, G.F., and Gasson, M.J. (1988) In vivo gene transfer systems and transposons. Biochimie 70, 489-502.
-
(1988)
Biochimie
, vol.70
, pp. 489-502
-
-
Fitzgerald, G.F.1
Gasson, M.J.2
-
45
-
-
0041870476
-
Yeast interactions and wine flavour
-
Fleet, G.H. (2003) Yeast interactions and wine flavour. Int J Food Microbiol 86, 11-22.
-
(2003)
Int J Food Microbiol
, vol.86
, pp. 11-22
-
-
Fleet, G.H.1
-
46
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.F., Dougherty, B.A., Merrick, J.M., et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
-
47
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank, D.N., St Amand, A.L., Feldman, R.A., Boedeker, E.C., Harpaz, N., and Pace, N.R. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 104, 13780-13785.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
48
-
-
45849150414
-
Application of bacteriocins in the control of foodborne pathogenic and spoilage bacteria
-
Galvez, A., Lopez, R.L., Abriouel, H., Valdivia, E., and Omar, N.B. (2008) Application of bacteriocins in the control of foodborne pathogenic and spoilage bacteria. Crit Rev Biotechnol 28, 125-152.
-
(2008)
Crit Rev Biotechnol
, vol.28
, pp. 125-152
-
-
Galvez, A.1
Lopez, R.L.2
Abriouel, H.3
Valdivia, E.4
Omar, N.B.5
-
49
-
-
0016754009
-
Detection of Lactobacillus acidophilus in feces of humans, pigs, and chickens
-
Gilliland, S.E., Speck, M.L., and Morgan, C.G. (1975) Detection of Lactobacillus acidophilus in feces of humans, pigs, and chickens. A ppl Microbiol 30, 541-545.
-
(1975)
A ppl Microbiol
, vol.30
, pp. 541-545
-
-
Gilliland, S.E.1
Speck, M.L.2
Morgan, C.G.3
-
50
-
-
33846415458
-
New methods for selecting and evaluating probiotics
-
Gueimonde, M., and Salminen, S. (2006) New methods for selecting and evaluating probiotics. Dig Liver Dis 38, S242-247.
-
(2006)
Dig Liver Dis
, vol.38
-
-
Gueimonde, M.1
Salminen, S.2
-
51
-
-
55849144695
-
Functional analysis of the Salmonella pathogenicity island 2-mediated inhibition of antigen presentation in dendritic cells
-
Halici, S., Zenk, S.F., Jantsch, J., and Hensel, M. (2008) Functional analysis of the Salmonella pathogenicity island 2-mediated inhibition of antigen presentation in dendritic cells. Infect Immun 76, 4924-4933.
-
(2008)
Infect Immun
, vol.76
, pp. 4924-4933
-
-
Halici, S.1
Zenk, S.F.2
Jantsch, J.3
Hensel, M.4
-
52
-
-
0040883743
-
The microbiology of vegetable fermentations
-
ed. B.J. Wood. London: Blackie Academic and Professional
-
Harris, L. (1998) The microbiology of vegetable fermentations. In Microbiology of Fermented Foods (2nd ed), ed. B.J. Wood, 46-72. London: Blackie Academic and Professional.
-
(1998)
In Microbiology of Fermented Foods (2nd ed)
, pp. 46-72
-
-
Harris, L.1
-
53
-
-
0036917143
-
Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation
-
Hayashi, H., Sakamoto, M., and Benno, Y. (2002a) Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol Immunol 46, 819-831.
-
(2002)
Microbiol Immunol
, vol.46
, pp. 819-831
-
-
Hayashi, H.1
Sakamoto, M.2
Benno, Y.3
-
54
-
-
0036024611
-
Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
-
Hayashi, H., Sakamoto, M., and Benno, Y. (2002b) Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 46, 535-548.
-
(2002)
Microbiol Immunol
, vol.46
, pp. 535-548
-
-
Hayashi, H.1
Sakamoto, M.2
Benno, Y.3
-
55
-
-
27644574002
-
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
-
Hayashi, H., Takahashi, R., Nishi, T., Sakamoto, M., and Benno, Y. (2005) Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J Med Microbiol 54, 1093-1101.
-
(2005)
J Med Microbiol
, vol.54
, pp. 1093-1101
-
-
Hayashi, H.1
Takahashi, R.2
Nishi, T.3
Sakamoto, M.4
Benno, Y.5
-
56
-
-
0035154517
-
Taxonomy and important features of probiotic microorganisms in food and nutrition
-
Holzapfel, W.H., Haberer, P., Geisen, R., Bjorkroth, J., and Schillinger, U. (2001) Taxonomy and important features of probiotic microorganisms in food and nutrition. Am J Clin Nutr 73, 365S-373S.
-
(2001)
Am J Clin Nutr
, vol.73
-
-
Holzapfel, W.H.1
Haberer, P.2
Geisen, R.3
Bjorkroth, J.4
Schillinger, U.5
-
57
-
-
0034806849
-
Genome of the bacterium Streptococcus pneumoniae strain R6
-
Hoskins, J., Alborn, W.E. Jr., Arnold, J., Blaszczak, L.C., Burgett, S., DeHoff, B.S., Estrem, S.T., Fritz, L., Fu, D.J., Fuller, W., Geringer, C., Gilmour, R., Glass, J.S., Khoja, H., Kraft, A.R., Lagace, R.E., LeBlanc, D.J., Lee, L.N., Lefkowitz, E.J., Lu, J., Matsushima, P., McAhren, S.M., McHenney, M., McLeaster, K., Mundy, C.W., Nicas, T.I., Norris, F.H., O'Gara, M., Peery, R.B., Robertson, G.T., Rockey, P., Sun, P.M., Winkler, M.E., Yang, Y., Young-Bellido, M., Zhao, G., Zook, C.A., Baltz, R.H., Jaskunas, S.R., Rosteck, P.R. Jr., Skatrud, P.L., and Glass, J.I. (2001) Genome of the bacterium Streptococcus pneumoniae strain R6. J Bacteriol 183, 5709-5717.
-
(2001)
J Bacteriol
, vol.183
, pp. 5709-5717
-
-
Hoskins, J.1
Alborn Jr., W.E.2
Arnold, J.3
Blaszczak, L.C.4
Burgett, S.5
DeHoff, B.S.6
Estrem, S.T.7
Fritz, L.8
Fu, D.J.9
Fuller, W.10
Geringer, C.11
Gilmour, R.12
Glass, J.S.13
Khoja, H.14
Kraft, A.R.15
Lagace, R.E.16
LeBlanc, D.J.17
Lee, L.N.18
Lefkowitz, E.J.19
Lu, J.20
Matsushima, P.21
McAhren, S.M.22
McHenney, M.23
McLeaster, K.24
Mundy, C.W.25
Nicas, T.I.26
Norris, F.H.27
O'Gara, M.28
Peery, R.B.29
Robertson, G.T.30
Rockey, P.31
Sun, P.M.32
Winkler, M.E.33
Yang, Y.34
Young-Bellido, M.35
Zhao, G.36
Zook, C.A.37
Baltz, R.H.38
Jaskunas, S.R.39
Rosteck Jr., P.R.40
Skatrud, P.L.41
Glass, J.I.42
more..
-
58
-
-
0142258688
-
Functionality of enterococci in meat products
-
Hugas, M., Garriga, M., and Aymerich, M.T. (2003) Functionality of enterococci in meat products. Int J Food Microbiol 88, 223-233.
-
(2003)
Int J Food Microbiol
, vol.88
, pp. 223-233
-
-
Hugas, M.1
Garriga, M.2
Aymerich, M.T.3
-
59
-
-
0019255393
-
New incompatibility groups of Staphylococcus aureus plasmids
-
Iordanescu, S., and Surdeanu, M. (1980) New incompatibility groups of Staphylococcus aureus plasmids. Plasmid 4, 256-260.
-
(1980)
Plasmid
, vol.4
, pp. 256-260
-
-
Iordanescu, S.1
Surdeanu, M.2
-
60
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen, R., Embden, J.D., Gaastra, W., and Schouls, L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43, 1565-1575.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
61
-
-
50249153550
-
Bacterial quorum sensing: Signals, circuits, and implications for biofilms and disease
-
Jayaraman, A., and Wood, T.K. (2008) Bacterial quorum sensing: Signals, circuits, and implications for biofilms and disease. Annu Rev Biomed Eng 10, 145-167.
-
(2008)
Annu Rev Biomed Eng
, vol.10
, pp. 145-167
-
-
Jayaraman, A.1
Wood, T.K.2
-
62
-
-
0025219582
-
Purification and characterization of acid urease from Lactobacillus fermentum
-
Kakimoto, S., Sumino, Y., Kawahara, K., Yamazaki, E., and Nakatsui, I. (1990) Purification and characterization of acid urease from Lactobacillus fermentum. Appl Microbiol Biotechnol 32, 538-543.
-
(1990)
Appl Microbiol Biotechnol
, vol.32
, pp. 538-543
-
-
Kakimoto, S.1
Sumino, Y.2
Kawahara, K.3
Yamazaki, E.4
Nakatsui, I.5
-
63
-
-
19744374524
-
Bacterial cell-to-cell signaling in the gastrointestinal tract
-
Kaper, J.B., and Sperandio, V. (2005) Bacterial cell-to-cell signaling in the gastrointestinal tract. Infect Immun 73, 3197-3209.
-
(2005)
Infect Immun
, vol.73
, pp. 3197-3209
-
-
Kaper, J.B.1
Sperandio, V.2
-
64
-
-
58149193233
-
-
Nucleic Acids Res, in press
-
Kiefer, F., Arnold, K., Kunzli, M., Bordoli, L., and Schwede, T. (2008) The SWISS-MODEL repository and associated resources. Nucleic Acids Res, in press.
-
(2008)
The SWISS-MODEL repository and associated resources
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
65
-
-
34250201129
-
Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy
-
Kim, J.B., Porreca, G.J., Song, L., Greenway, S.C., Gorham, J.M., Church, G.M., Seidman, C.E., and Seidman, J.G. (2007a) Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. Science 316, 1481-1484.
-
(2007)
Science
, vol.316
, pp. 1481-1484
-
-
Kim, J.B.1
Porreca, G.J.2
Song, L.3
Greenway, S.C.4
Gorham, J.M.5
Church, G.M.6
Seidman, C.E.7
Seidman, J.G.8
-
66
-
-
35348837342
-
Anti-inflammatory effects of recombinant arginine deiminase originating from Lactococcus lactis ssp. lactis ATCC 7962
-
Kim, J.E., Hur, H.J., Lee, K.W., and Lee, H.J. (2007b) Anti-inflammatory effects of recombinant arginine deiminase originating from Lactococcus lactis ssp. lactis ATCC 7962. J Microbiol Biotechnol 17, 1491-1497.
-
(2007)
J Microbiol Biotechnol
, vol.17
, pp. 1491-1497
-
-
Kim, J.E.1
Hur, H.J.2
Lee, K.W.3
Lee, H.J.4
-
67
-
-
0023926266
-
Bacteriocins of lactic acid bacteria
-
Klaenhammer, T.R. (1988) Bacteriocins of lactic acid bacteria. Biochimie 70, 337-349.
-
(1988)
Biochimie
, vol.70
, pp. 337-349
-
-
Klaenhammer, T.R.1
-
68
-
-
23944518601
-
Genomic features of lactic acid bacteria effecting bioprocessing and health
-
Klaenhammer, T.R., Barrangou, R., Buck, B.L., Azcarate-Peril, M.A., and Altermann, E. (2005) Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiol Rev 29, 393-409.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 393-409
-
-
Klaenhammer, T.R.1
Barrangou, R.2
Buck, B.L.3
Azcarate-Peril, M.A.4
Altermann, E.5
-
69
-
-
0037452621
-
Complete genome sequence of Lactobacillus plantarum WCFS1
-
Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O.P., Leer, R., Tarchini, R., Peters, S.A., Sandbrink, H.M., Fiers, M.W., Stiekema, W., Lankhorst, R.M., Bron, P.A., Hoffer, S.M., Groot, M.N., Kerkhoven, R., de Vries, M., Ursing, B., de Vos, W.M., and Siezen, R.J. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A 100, 1990-1995.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 1990-1995
-
-
Kleerebezem, M.1
Boekhorst, J.2
van Kranenburg, R.3
Molenaar, D.4
Kuipers, O.P.5
Leer, R.6
Tarchini, R.7
Peters, S.A.8
Sandbrink, H.M.9
Fiers, M.W.10
Stiekema, W.11
Lankhorst, R.M.12
Bron, P.A.13
Hoffer, S.M.14
Groot, M.N.15
Kerkhoven, R.16
de Vries, M.17
Ursing, B.18
de Vos, W.M.19
Siezen, R.J.20
more..
-
70
-
-
0032568570
-
Taxonomy and physiology of probiotic lactic acid bacteria
-
Klein, G., Pack, A., Bonaparte, C., and Reuter, G. (1998) Taxonomy and physiology of probiotic lactic acid bacteria. Int J Food Microbiol 41, 103-125.
-
(1998)
Int J Food Microbiol
, vol.41
, pp. 103-125
-
-
Klein, G.1
Pack, A.2
Bonaparte, C.3
Reuter, G.4
-
71
-
-
23944444998
-
Comparative and functional genomics of lactococci
-
Kok, J., Buist, G., Zomer, A.L., van Hijum, S.A., and Kuipers, O.P. (2005) Comparative and functional genomics of lactococci. FEMS Microbiol Rev 29, 411-433.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 411-433
-
-
Kok, J.1
Buist, G.2
Zomer, A.L.3
van Hijum, S.A.4
Kuipers, O.P.5
-
72
-
-
33751217150
-
The bacterial species definition in the genomic era
-
Konstantinidis, K.T., Ramette, A., and Tiedje, J.M. (2006) The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci 361, 1929-1940.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 1929-1940
-
-
Konstantinidis, K.T.1
Ramette, A.2
Tiedje, J.M.3
-
73
-
-
0032825378
-
Identification of the pH-inducible, proton-translocating F1F0-ATPase (atpBEFHAGDC) operon of Lactobacillus acidophilus by differential display: gene structure, cloning and characterization
-
Kullen, M.J., and Klaenhammer, T.R. (1999) Identification of the pH-inducible, proton-translocating F1F0-ATPase (atpBEFHAGDC) operon of Lactobacillus acidophilus by differential display: gene structure, cloning and characterization. Mol Microbiol 33, 1152-1161.
-
(1999)
Mol Microbiol
, vol.33
, pp. 1152-1161
-
-
Kullen, M.J.1
Klaenhammer, T.R.2
-
74
-
-
33847202223
-
Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum
-
Lambert, J.M., Bongers, R.S., and Kleerebezem, M. (2007) Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum. Appl Environ Microbiol 73, 1126-1135.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1126-1135
-
-
Lambert, J.M.1
Bongers, R.S.2
Kleerebezem, M.3
-
75
-
-
54549099330
-
Species of Enterococcus faecalis associated with free-living rodents
-
Laukova, A., Strompfova, V., Simonova, M., Styriak, I., and Swiecicka, I. (2008) Species of Enterococcus faecalis associated with free-living rodents. Folia Microbiol 53, 173-178.
-
(2008)
Folia Microbiol
, vol.53
, pp. 173-178
-
-
Laukova, A.1
Strompfova, V.2
Simonova, M.3
Styriak, I.4
Swiecicka, I.5
-
76
-
-
14344264950
-
Carnobacterium divergens and Carnobacterium maltaromaticum as spoilers or protective cultures in meat and seafood: Phenotypic and genotypic characterization
-
Laursen, B.G., Bay, L., Cleenwerck, I., Vancanneyt, M., Swings, J., Dalgaard, P., and Leisner, J.J. (2005) Carnobacterium divergens and Carnobacterium maltaromaticum as spoilers or protective cultures in meat and seafood: Phenotypic and genotypic characterization. Syst Appl Microbiol 28, 151-164.
-
(2005)
Syst Appl Microbiol
, vol.28
, pp. 151-164
-
-
Laursen, B.G.1
Bay, L.2
Cleenwerck, I.3
Vancanneyt, M.4
Swings, J.5
Dalgaard, P.6
Leisner, J.J.7
-
77
-
-
33846632778
-
Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation
-
Lebeer, S., De Keersmaecker, S.C., Verhoeven, T.L., Fadda, A.A., Marchal, K., and Vanderleyden, J. (2007) Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation. J Bacteriol 189, 860-871.
-
(2007)
J Bacteriol
, vol.189
, pp. 860-871
-
-
Lebeer, S.1
De Keersmaecker, S.C.2
Verhoeven, T.L.3
Fadda, A.A.4
Marchal, K.5
Vanderleyden, J.6
-
78
-
-
34547882462
-
Carnobacterium: Positive and negative effects in the environment and in foods
-
Leisner, J.J., Laursen, B.G., Prevost, H., Drider, D., and Dalgaard, P. (2007) Carnobacterium: Positive and negative effects in the environment and in foods. FEMS Microbiol Rev 31, 592-613.
-
(2007)
FEMS Microbiol Rev
, vol.31
, pp. 592-613
-
-
Leisner, J.J.1
Laursen, B.G.2
Prevost, H.3
Drider, D.4
Dalgaard, P.5
-
79
-
-
22144436672
-
Genomic organization and molecular analysis of virulent bacteriophage 2972 infecting an exopolysaccharide-producing Streptococcus thermophilus strain
-
Levesque, C., Duplessis, M., Labonte, J., Labrie, S., Fremaux, C., Tremblay, D., and Moineau, S. (2005) Genomic organization and molecular analysis of virulent bacteriophage 2972 infecting an exopolysaccharide-producing Streptococcus thermophilus strain. Appl Environ Microbiol 71, 4057-4068.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4057-4068
-
-
Levesque, C.1
Duplessis, M.2
Labonte, J.3
Labrie, S.4
Fremaux, C.5
Tremblay, D.6
Moineau, S.7
-
80
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley, R.E., Turnbaugh, P.J., Klein, S., and Gordon, J.I. (2006) Microbial ecology: Human gut microbes associated with obesity. Nature 444, 1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
81
-
-
10344264959
-
Increased oxidative stress and decreased antioxidant defenses in mucosa of inflammatory bowel disease
-
Lih-Brody, L., Powell, S.R., Collier, K.P., Reddy, G.M., Cerchia, R., Kahn, E., Weissman, G.S., Katz, S., Floyd, R.A., McKinley, M.J., Fisher, S.E., and Mullin, G.E. (1996) Increased oxidative stress and decreased antioxidant defenses in mucosa of inflammatory bowel disease. Dig Dis Sci 41, 2078-2086.
-
(1996)
Dig Dis Sci
, vol.41
, pp. 2078-2086
-
-
Lih-Brody, L.1
Powell, S.R.2
Collier, K.P.3
Reddy, G.M.4
Cerchia, R.5
Kahn, E.6
Weissman, G.S.7
Katz, S.8
Floyd, R.A.9
McKinley, M.J.10
Fisher, S.E.11
Mullin, G.E.12
-
82
-
-
28844441314
-
A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality
-
Loo, V.G., Poirier, L., Miller, M.A., Oughton, M., Libman, M.D., Michaud, S., Bourgault, A.M., Nguyen, T., Frenette, C., Kelly, M., Vibien, A., Brassard, P., Fenn, S., Dewar, K., Hudson, T.J., Horn, R., Rene, P., Monczak, Y., and Dascal, A. (2005) A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality. N Engl J Med 353, 2442-2449.
-
(2005)
N Engl J Med
, vol.353
, pp. 2442-2449
-
-
Loo, V.G.1
Poirier, L.2
Miller, M.A.3
Oughton, M.4
Libman, M.D.5
Michaud, S.6
Bourgault, A.M.7
Nguyen, T.8
Frenette, C.9
Kelly, M.10
Vibien, A.11
Brassard, P.12
Fenn, S.13
Dewar, K.14
Hudson, T.J.15
Horn, R.16
Rene, P.17
Monczak, Y.18
Dascal, A.19
-
83
-
-
0027998116
-
Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
-
Ludwig, W., and Schleifer, K.H. (1994) Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 15, 155-173.
-
(1994)
FEMS Microbiol Rev
, vol.15
, pp. 155-173
-
-
Ludwig, W.1
Schleifer, K.H.2
-
84
-
-
33846075967
-
Evolutionary genomics of lactic acid bacteria
-
Makarova, K.S., and Koonin, E.V. (2007) Evolutionary genomics of lactic acid bacteria. J Bacteriol 189, 1199-1208.
-
(2007)
J Bacteriol
, vol.189
, pp. 1199-1208
-
-
Makarova, K.S.1
Koonin, E.V.2
-
85
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., Shakhova, V., Grigoriev, I., Lou, Y., Rohksar, D., Lucas, S., Huang, K., Goodstein, D.M., Hawkins, T., Plengvidhya, V., Welker, D., Hughes, J., Goh, Y., Benson, A., Baldwin, K., Lee, J.H., Diaz-Muniz, I., Dosti, B., Smeianov, V., Wechter, W., Barabote, R., Lorca, G., Altermann, E., Barrangou, R., Ganesan, B., Xie, Y., Rawsthorne, H., Tamir, D., Parker, C., Breidt, F., Broadbent, J., Hutkins, R., O'Sullivan, D., Steele, J., Unlu, G., Saier, M., Klaenhammer, T., Richardson, P., Kozyavkin, S., Weimer, B., and Mills, D. (2006) Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A 103, 15611-15616.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.6
Pavlov, A.7
Pavlova, N.8
Karamychev, V.9
Polouchine, N.10
Shakhova, V.11
Grigoriev, I.12
Lou, Y.13
Rohksar, D.14
Lucas, S.15
Huang, K.16
Goodstein, D.M.17
Hawkins, T.18
Plengvidhya, V.19
Welker, D.20
Hughes, J.21
Goh, Y.22
Benson, A.23
Baldwin, K.24
Lee, J.H.25
Diaz-Muniz, I.26
Dosti, B.27
Smeianov, V.28
Wechter, W.29
Barabote, R.30
Lorca, G.31
Altermann, E.32
Barrangou, R.33
Ganesan, B.34
Xie, Y.35
Rawsthorne, H.36
Tamir, D.37
Parker, C.38
Breidt, F.39
Broadbent, J.40
Hutkins, R.41
O'Sullivan, D.42
Steele, J.43
Unlu, G.44
Saier, M.45
Klaenhammer, T.46
Richardson, P.47
Kozyavkin, S.48
Weimer, B.49
Mills, D.50
more..
-
86
-
-
38749153289
-
Role of hypermutability in the evolution of the genus Oenococcus
-
Marcobal, A.M., Sela, D.A., Wolf, Y.I., Makarova, K.S., and Mills, D.A. (2008) Role of hypermutability in the evolution of the genus Oenococcus. J Bacteriol 190, 564-570.
-
(2008)
J Bacteriol
, vol.190
, pp. 564-570
-
-
Marcobal, A.M.1
Sela, D.A.2
Wolf, Y.I.3
Makarova, K.S.4
Mills, D.A.5
-
87
-
-
23944514505
-
Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemaking
-
Mills, D.A., Rawsthorne, H., Parker, C., Tamir, D., and Makarova, K. (2005) Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemaking. FEMS Microbiol Rev 29, 465-475.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 465-475
-
-
Mills, D.A.1
Rawsthorne, H.2
Parker, C.3
Tamir, D.4
Makarova, K.5
-
88
-
-
2542454740
-
Oxidative stress in Lactococcus lactis
-
Miyoshi, A., Rochat, T., Gratadoux, J.J., Le Loir, Y., Oliveira, S.C., Langella, P., and Azevedo, V. (2003) Oxidative stress in Lactococcus lactis. Genet Mol Res 2, 348-359.
-
(2003)
Genet Mol Res
, vol.2
, pp. 348-359
-
-
Miyoshi, A.1
Rochat, T.2
Gratadoux, J.J.3
Le Loir, Y.4
Oliveira, S.C.5
Langella, P.6
Azevedo, V.7
-
89
-
-
0029163026
-
Molecular biology of microbial ureases
-
Mobley, H.L., Island, M.D., and Hausinger, R.P. (1995) Molecular biology of microbial ureases. Microbiol Rev 59, 451-480.
-
(1995)
Microbiol Rev
, vol.59
, pp. 451-480
-
-
Mobley, H.L.1
Island, M.D.2
Hausinger, R.P.3
-
90
-
-
35648958112
-
Lactococcus lactis, an efficient cell factory for recombinant protein production and secretion
-
Morello, E., Bermudez-Humaran, L.G., Llull, D., Sole, V., Miraglio, N., Langella, P., and Poquet, I. (2008) Lactococcus lactis, an efficient cell factory for recombinant protein production and secretion. J Mol Microbiol Biotechnol 14, 48-58.
-
(2008)
J Mol Microbiol Biotechnol
, vol.14
, pp. 48-58
-
-
Morello, E.1
Bermudez-Humaran, L.G.2
Llull, D.3
Sole, V.4
Miraglio, N.5
Langella, P.6
Poquet, I.7
-
91
-
-
26944480828
-
Winemaking biochemistry and microbiology: Current knowledge and future trends
-
Moreno-Arribas, M.V., and Polo, M.C. (2005) Winemaking biochemistry and microbiology: Current knowledge and future trends. Crit Rev Food Sci Nutr 45, 265-286.
-
(2005)
Crit Rev Food Sci Nutr
, vol.45
, pp. 265-286
-
-
Moreno-Arribas, M.V.1
Polo, M.C.2
-
92
-
-
0016377968
-
Genetic basis of nutritional requirements in Lactobacillus casei
-
Morishita, T., Fukada, T., Shirota, M., and Yura, T. (1974) Genetic basis of nutritional requirements in Lactobacillus casei. J Bacteriol 120, 1078-1084.
-
(1974)
J Bacteriol
, vol.120
, pp. 1078-1084
-
-
Morishita, T.1
Fukada, T.2
Shirota, M.3
Yura, T.4
-
93
-
-
56049119880
-
Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production
-
Morita, H., Toh, H., Fukuda, S., Horikawa, H., Oshima, K., Suzuki, T., Murakami, M., Hisamatsu, S., Kato, Y., Takizawa, T., Fukuoka, H., Yoshimura, T., Itoh, K., O'Sullivan, D.J., McKay, L.L., Ohno, H., Kikuchi, J., Masaoka, T., and Hattori, M. (2008) Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. DNA Res 15, 151-161.
-
(2008)
DNA Res
, vol.15
, pp. 151-161
-
-
Morita, H.1
Toh, H.2
Fukuda, S.3
Horikawa, H.4
Oshima, K.5
Suzuki, T.6
Murakami, M.7
Hisamatsu, S.8
Kato, Y.9
Takizawa, T.10
Fukuoka, H.11
Yoshimura, T.12
Itoh, K.13
O'Sullivan, D.J.14
McKay, L.L.15
Ohno, H.16
Kikuchi, J.17
Masaoka, T.18
Hattori, M.19
-
94
-
-
0036364263
-
The molecular mechanism of ATP synthesis by F1F0-ATP synthase: A scrutiny of the major possibilities
-
Nath, S. (2002) The molecular mechanism of ATP synthesis by F1F0-ATP synthase: A scrutiny of the major possibilities. Adv Biochem Eng Biotechnol 74, 65-98.
-
(2002)
Adv Biochem Eng Biotechnol
, vol.74
, pp. 65-98
-
-
Nath, S.1
-
95
-
-
55549107132
-
Comparative study of the pln locus of the quorum-sensing regulated bacteriocin-producing Lactobacillus plantarum J51 strain
-
Navarro, L., Rojo-Bezares, B., Saenz, Y., Diez, L., Zarazaga, M., Ruiz-Larrea, F., and Torres, C. (2008) Comparative study of the pln locus of the quorum-sensing regulated bacteriocin-producing Lactobacillus plantarum J51 strain. Int J Food Microbiol 128, 390-394.
-
(2008)
Int J Food Microbiol
, vol.128
, pp. 390-394
-
-
Navarro, L.1
Rojo-Bezares, B.2
Saenz, Y.3
Diez, L.4
Zarazaga, M.5
Ruiz-Larrea, F.6
Torres, C.7
-
96
-
-
38849152309
-
Identification of lactic acid bacteria from poultry feces: Evidence on anti-campylobacter and anti-listeria activities
-
Nazef, L., Belguesmia, Y., Tani, A., Prevost, H., and Drider, D. (2008) Identification of lactic acid bacteria from poultry feces: Evidence on anti-campylobacter and anti-listeria activities. Poult Sci 87, 329-334.
-
(2008)
Poult Sci
, vol.87
, pp. 329-334
-
-
Nazef, L.1
Belguesmia, Y.2
Tani, A.3
Prevost, H.4
Drider, D.5
-
97
-
-
33745594044
-
The gut flora as a forgotten organ
-
O'Hara, A.M., and Shanahan, F. (2006) The gut flora as a forgotten organ. EMBO Rep 7, 688-693.
-
(2006)
EMBO Rep
, vol.7
, pp. 688-693
-
-
O'Hara, A.M.1
Shanahan, F.2
-
98
-
-
0027855511
-
High-and low-copy-number Lactococcus shuttle cloning vectors with features for clone screening
-
O'Sullivan, D.J., and Klaenhammer, T.R. (1993) High-and low-copy-number Lactococcus shuttle cloning vectors with features for clone screening. Gene 137, 227-231.
-
(1993)
Gene
, vol.137
, pp. 227-231
-
-
O'Sullivan, D.J.1
Klaenhammer, T.R.2
-
99
-
-
1842453218
-
Defensin-mediated innate immunity in the small intestine
-
Ouellette, A.J. (2004) Defensin-mediated innate immunity in the small intestine. Best Pract Res Clin Gastroenterol 18, 405-419.
-
(2004)
Best Pract Res Clin Gastroenterol
, vol.18
, pp. 405-419
-
-
Ouellette, A.J.1
-
100
-
-
0037470983
-
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
-
Paulsen, I.T., Banerjei, L., Myers, G.S., Nelson, K.E., Seshadri, R., Read, T.D., Fouts, D.E., Eisen, J.A., Gill, S.R., Heidelberg, J.F., Tettelin, H., Dodson, R.J., Umayam, L., Brinkac, L., Beanan, M., Daugherty, S., DeBoy, R.T., Durkin, S., Kolonay, J., Madupu, R., Nelson, W., Vamathevan, J., Tran, B., Upton, J., Hansen, T., Shetty, J., Khouri, H., Utterback, T., Radune, D., Ketchum, K.A., Dougherty, B.A., and Fraser, C.M. (2003) Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299, 2071-2074.
-
(2003)
Science
, vol.299
, pp. 2071-2074
-
-
Paulsen, I.T.1
Banerjei, L.2
Myers, G.S.3
Nelson, K.E.4
Seshadri, R.5
Read, T.D.6
Fouts, D.E.7
Eisen, J.A.8
Gill, S.R.9
Heidelberg, J.F.10
Tettelin, H.11
Dodson, R.J.12
Umayam, L.13
Brinkac, L.14
Beanan, M.15
Daugherty, S.16
DeBoy, R.T.17
Durkin, S.18
Kolonay, J.19
Madupu, R.20
Nelson, W.21
Vamathevan, J.22
Tran, B.23
Upton, J.24
Hansen, T.25
Shetty, J.26
Khouri, H.27
Utterback, T.28
Radune, D.29
Ketchum, K.A.30
Dougherty, B.A.31
Fraser, C.M.32
more..
-
101
-
-
33747034144
-
Purification and functional studies of a potent modified quorum-sensing peptide and a two-peptide bacteriocin in Streptococcus mutans
-
Petersen, F.C., Fimland, G., and Scheie, A.A. (2006) Purification and functional studies of a potent modified quorum-sensing peptide and a two-peptide bacteriocin in Streptococcus mutans. Mol Microbiol 61, 1322-1334.
-
(2006)
Mol Microbiol
, vol.61
, pp. 1322-1334
-
-
Petersen, F.C.1
Fimland, G.2
Scheie, A.A.3
-
102
-
-
0035166979
-
The comprehensive microbial resource
-
Peterson, J.D., Umayam, L.A., Dickinson, T., Hickey, E.K., and White, O. (2001) The comprehensive microbial resource. Nucleic Acids Res 29, 123-125.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
103
-
-
0013923601
-
Chemical characterization of wines fermented with various malo-lactic bacteria
-
Pilone, G.J., Kunkee, R.E., and Webb, A.D. (1966) Chemical characterization of wines fermented with various malo-lactic bacteria. Appl Microbiol 14, 608-615.
-
(1966)
Appl Microbiol
, vol.14
, pp. 608-615
-
-
Pilone, G.J.1
Kunkee, R.E.2
Webb, A.D.3
-
104
-
-
35648996383
-
Development of software facilities to characterize regulatory binding motifs and application to streptococcaceae
-
Pons, N., Batto, J.M., Ehrlich, S.D., and Renault, P. (2008) Development of software facilities to characterize regulatory binding motifs and application to streptococcaceae. J Mol Microbiol Biotechnol 14, 67-73.
-
(2008)
J Mol Microbiol Biotechnol
, vol.14
, pp. 67-73
-
-
Pons, N.1
Batto, J.M.2
Ehrlich, S.D.3
Renault, P.4
-
105
-
-
10744220291
-
The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
-
Pridmore, R.D., Berger, B., Desiere, F., Vilanova, D., Barretto, C., Pittet, A.C., Zwahlen, M.C., Rouvet, M., Altermann, E., Barrangou, R., Mollet, B., Mercenier, A., Klaenhammer, T., Arigoni, F., and Schell, M.A. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc Natl Acad Sci U S A 101, 2512-2517.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2512-2517
-
-
Pridmore, R.D.1
Berger, B.2
Desiere, F.3
Vilanova, D.4
Barretto, C.5
Pittet, A.C.6
Zwahlen, M.C.7
Rouvet, M.8
Altermann, E.9
Barrangou, R.10
Mollet, B.11
Mercenier, A.12
Klaenhammer, T.13
Arigoni, F.14
Schell, M.A.15
-
106
-
-
49649089054
-
Molecular eco-systems biology: Towards an understanding of community function
-
Raes, J., and Bork, P. (2008) Molecular eco-systems biology: Towards an understanding of community function. Nat Rev Microbiol 6, 693-699.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 693-699
-
-
Raes, J.1
Bork, P.2
-
107
-
-
33645876449
-
New developments in the study of the microbiota of naturally fermented sausages as determined by molecular methods: A review
-
Rantsiou, K., and Cocolin, L. (2006) New developments in the study of the microbiota of naturally fermented sausages as determined by molecular methods: A review. Int J Food Microbiol 108, 255-267.
-
(2006)
Int J Food Microbiol
, vol.108
, pp. 255-267
-
-
Rantsiou, K.1
Cocolin, L.2
-
108
-
-
33750736714
-
Use of molecular tools to characterize Lactobacillus spp. isolated from Greek traditional fermented sausages
-
Rantsiou, K., Drosinos, E.H., Gialitaki, M., Metaxopoulos, I., Comi, G., and Cocolin, L. (2006) Use of molecular tools to characterize Lactobacillus spp. isolated from Greek traditional fermented sausages. Int J Food Microbiol 112, 215-222.
-
(2006)
Int J Food Microbiol
, vol.112
, pp. 215-222
-
-
Rantsiou, K.1
Drosinos, E.H.2
Gialitaki, M.3
Metaxopoulos, I.4
Comi, G.5
Cocolin, L.6
-
109
-
-
49449098862
-
Streptococcus thermophilus core genome: Comparative genome hybridization study of 47 strains
-
Rasmussen, T.B., Danielsen, M., Valina, O., Garrigues, C., Johansen, E., and Pedersen, M.B. (2008) Streptococcus thermophilus core genome: Comparative genome hybridization study of 47 strains. Appl Environ Microbiol 74, 4703-4710.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4703-4710
-
-
Rasmussen, T.B.1
Danielsen, M.2
Valina, O.3
Garrigues, C.4
Johansen, E.5
Pedersen, M.B.6
-
110
-
-
0035156787
-
The Lactobacillus and Bifidobacterium microflora of the human intestine: Composition and succession
-
Reuter, G. (2001) The Lactobacillus and Bifidobacterium microflora of the human intestine: Composition and succession. Curr Issues Intest Microbiol 2, 43-53.
-
(2001)
Curr Issues Intest Microbiol
, vol.2
, pp. 43-53
-
-
Reuter, G.1
-
111
-
-
58149305826
-
Divercin V41 from gene characterization to food applications: 1998-2008, a decade of solved and unsolved questions
-
Rihakova, J., Belguesmia, Y., Petit, V.W., Pilet, M.F., Prevost, H., Dousset, X., and Drider, D. (2008) Divercin V41 from gene characterization to food applications: 1998-2008, a decade of solved and unsolved questions. Lett Appl Microbiol 48, 1-7.
-
(2008)
Lett Appl Microbiol
, vol.48
, pp. 1-7
-
-
Rihakova, J.1
Belguesmia, Y.2
Petit, V.W.3
Pilet, M.F.4
Prevost, H.5
Dousset, X.6
Drider, D.7
-
112
-
-
33747342672
-
Production of a heterologous nonheme catalase by Lactobacillus casei: An efficient tool for removal of H 2 O 2 and protection of Lactobacillus bulgaricus from oxidative stress in milk
-
Rochat, T., Gratadoux, J.J., Gruss, A., Corthier, G., Maguin, E., Langella, P., and van de Guchte, M. (2006) Production of a heterologous nonheme catalase by Lactobacillus casei: An efficient tool for removal of H 2 O 2 and protection of Lactobacillus bulgaricus from oxidative stress in milk. Appl Environ Microbiol 72, 5143-5149.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5143-5149
-
-
Rochat, T.1
Gratadoux, J.J.2
Gruss, A.3
Corthier, G.4
Maguin, E.5
Langella, P.6
van de Guchte, M.7
-
113
-
-
0035174578
-
The species concept for prokaryotes
-
Rossello-Mora, R., and Amann, R. (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 39-67
-
-
Rossello-Mora, R.1
Amann, R.2
-
114
-
-
0035462342
-
Efficient system for directed integration into the Lactobacillus acidophilus and Lactobacillus gasseri chromosomes via homologous recombination
-
Russell, W.M., and Klaenhammer, T.R. (2001) Efficient system for directed integration into the Lactobacillus acidophilus and Lactobacillus gasseri chromosomes via homologous recombination. Appl Environ Microbiol 67, 4361-4364.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4361-4364
-
-
Russell, W.M.1
Klaenhammer, T.R.2
-
115
-
-
0026484643
-
Lactic acid bacteria in the gut in normal and disordered states
-
Salminen, S., and Deighton, M. (1992) Lactic acid bacteria in the gut in normal and disordered states. Dig Dis 10, 227-238.
-
(1992)
Dig Dis
, vol.10
, pp. 227-238
-
-
Salminen, S.1
Deighton, M.2
-
116
-
-
0031984335
-
A chloride-inducible acid resistance mechanism in Lactococcus lactis and its regulation
-
Sanders, J.W., Leenhouts, K., Burghoorn, J., Brands, J.R., Venema, G., and Kok, J. (1998) A chloride-inducible acid resistance mechanism in Lactococcus lactis and its regulation. Mol Microbiol 27, 299-310.
-
(1998)
Mol Microbiol
, vol.27
, pp. 299-310
-
-
Sanders, J.W.1
Leenhouts, K.2
Burghoorn, J.3
Brands, J.R.4
Venema, G.5
Kok, J.6
-
117
-
-
0032940751
-
The physicochemical environment of the neonatal intestine
-
Sanderson, I.R. (1999) The physicochemical environment of the neonatal intestine. Am J Clin Nutr 69, 1028S-1034S.
-
(1999)
Am J Clin Nutr
, vol.69
-
-
Sanderson, I.R.1
-
118
-
-
2442453484
-
Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: Antibiotics, probiotics, and prebiotics
-
Sartor, R.B. (2004) Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: Antibiotics, probiotics, and prebiotics. Gastroenterology 126, 1620-1633.
-
(2004)
Gastroenterology
, vol.126
, pp. 1620-1633
-
-
Sartor, R.B.1
-
119
-
-
38049047599
-
Application of bacteriocins in vegetable food biopreservation
-
Settanni, L., and Corsetti, A. (2008) Application of bacteriocins in vegetable food biopreservation. Int J Food Microbiol 121, 123-138.
-
(2008)
Int J Food Microbiol
, vol.121
, pp. 123-138
-
-
Settanni, L.1
Corsetti, A.2
-
120
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J., and Ji, H. (2008) Next-generation DNA sequencing. Nat Biotechnol 26, 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
121
-
-
50049090651
-
Unraveling microbial interactions in food fermentations: From classical to genomics approaches
-
Sieuwerts, S., de Bok, F.A., Hugenholtz, J., and van Hylckama Vlieg, J.E. (2008) Unraveling microbial interactions in food fermentations: From classical to genomics approaches. Appl Environ Microbiol 74, 4997-5007.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4997-5007
-
-
Sieuwerts, S.1
de Bok, F.A.2
Hugenholtz, J.3
van Hylckama Vlieg, J.E.4
-
122
-
-
53349099745
-
Healthcare epidemiology quorum sensing: Bacteria talk sense
-
Sifri, C.D. (2008) Healthcare epidemiology quorum sensing: Bacteria talk sense. Clin Infect Dis 47, 1070-1076.
-
(2008)
Clin Infect Dis
, vol.47
, pp. 1070-1076
-
-
Sifri, C.D.1
-
123
-
-
0023628787
-
Antimicrobial substance from a human Lactobacillus strain
-
Silva, M., Jacobus, N.V., Deneke, C., and Gorbach, S.L. (1987) Antimicrobial substance from a human Lactobacillus strain. Antimicrob Agents Chemother 31, 1231-1233.
-
(1987)
Antimicrob Agents Chemother
, vol.31
, pp. 1231-1233
-
-
Silva, M.1
Jacobus, N.V.2
Deneke, C.3
Gorbach, S.L.4
-
124
-
-
0027998681
-
Transposition in Lactobacillus sake and its abolition of lactocin S production by insertion of IS1163, a new member of the IS3 family
-
Skaugen, M., and Nes, I.F. (1994) Transposition in Lactobacillus sake and its abolition of lactocin S production by insertion of IS1163, a new member of the IS3 family. Appl Environ Microbiol 60, 2818-2825.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2818-2825
-
-
Skaugen, M.1
Nes, I.F.2
-
125
-
-
34247597932
-
Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium
-
Smeianov, V.V., Wechter, P., Broadbent, J.R., Hughes, J.E., Rodriguez, B.T., Christensen, T.K., Ardo, Y., and Steele, J.L. (2007) Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium. Appl Environ Microbiol 73, 2661-2672.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2661-2672
-
-
Smeianov, V.V.1
Wechter, P.2
Broadbent, J.R.3
Hughes, J.E.4
Rodriguez, B.T.5
Christensen, T.K.6
Ardo, Y.7
Steele, J.L.8
-
127
-
-
0034714188
-
Treatment of murine colitis by Lactococcus lactis secreting interleukin-10
-
Steidler, L., Hans, W., Schotte, L., Neirynck, S., Obermeier, F., Falk, W., Fiers, W., and Remaut, E. (2000) Treatment of murine colitis by Lactococcus lactis secreting interleukin-10. Science 289, 1352-1355.
-
(2000)
Science
, vol.289
, pp. 1352-1355
-
-
Steidler, L.1
Hans, W.2
Schotte, L.3
Neirynck, S.4
Obermeier, F.5
Falk, W.6
Fiers, W.7
Remaut, E.8
-
128
-
-
34547842488
-
Quorum-sensing based bacteriocin production is down-regulated by N-terminally truncated species of gene activators
-
Straume, D., Kjos, M., Nes, I.F., and Diep, D.B. (2007) Quorum-sensing based bacteriocin production is down-regulated by N-terminally truncated species of gene activators. Mol Genet Genomics 278, 283-293.
-
(2007)
Mol Genet Genomics
, vol.278
, pp. 283-293
-
-
Straume, D.1
Kjos, M.2
Nes, I.F.3
Diep, D.B.4
-
129
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J.J., Gibson, G.R., Collins, M.D., and Dore, J. (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65, 4799-4807.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
Collins, M.D.6
Dore, J.7
-
130
-
-
37549043523
-
Autoinducer-2 regulated genes in Streptococcus mutans UA159 and global metabolic effect of the luxS mutation
-
Sztajer, H., Lemme, A., Vilchez, R., Schulz, S., Geffers, R., Yip, C., Levesque, C.M., Cvitkovitch, D.G., and Wagner-Dobler, I. (2007) Autoinducer-2 regulated genes in Streptococcus mutans UA159 and global metabolic effect of the luxS mutation. J Bacteriol 190, 401-415.
-
(2007)
J Bacteriol
, vol.190
, pp. 401-415
-
-
Sztajer, H.1
Lemme, A.2
Vilchez, R.3
Schulz, S.4
Geffers, R.5
Yip, C.6
Levesque, C.M.7
Cvitkovitch, D.G.8
Wagner-Dobler, I.9
-
131
-
-
0024514585
-
Chemical characterization of an antimicrobial substance produced by Lactobacillus reuteri
-
Talarico, T.L., and Dobrogosz, W.J. (1989) Chemical characterization of an antimicrobial substance produced by Lactobacillus reuteri. Antimicrob Agents Chemother 33, 674-679.
-
(1989)
Antimicrob Agents Chemother
, vol.33
, pp. 674-679
-
-
Talarico, T.L.1
Dobrogosz, W.J.2
-
132
-
-
52449089350
-
Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand
-
Tanasupawat, S., Sukontasing, S., and Lee, J.S. (2008) Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand. Int J Syst Evol Microbiol 58, 1630-1634.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1630-1634
-
-
Tanasupawat, S.1
Sukontasing, S.2
Lee, J.S.3
-
133
-
-
0042838040
-
Lactobacillus reuteri CRL1098 produces cobalamin
-
Taranto, M.P., Vera, J.L., Hugenholtz, J., De Valdez, G.F., and Sesma, F. (2003) Lactobacillus reuteri CRL1098 produces cobalamin. J Bacteriol 185, 5643-5647.
-
(2003)
J Bacteriol
, vol.185
, pp. 5643-5647
-
-
Taranto, M.P.1
Vera, J.L.2
Hugenholtz, J.3
De Valdez, G.F.4
Sesma, F.5
-
134
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
Tettelin, H., Nelson, K.E., Paulsen, I.T., Eisen, J.A., Read, T.D., Peterson, S., Heidelberg, J., DeBoy, R.T., Haft, D.H., Dodson, R.J., Durkin, A.S., Gwinn, M., Kolonay, J.F., Nelson, W.C., Peterson, J.D., Umayam, L.A., White, O., Salzberg, S.L., Lewis, M.R., Radune, D., Holtzapple, E., Khouri, H., Wolf, A.M., Utterback, T.R., Hansen, C.L., McDonald, L.A., Feldblyum, T.V., Angiuoli, S., Dickinson, T., Hickey, E.K., Holt, I.E., Loftus, B.J., Yang, F., Smith, H.O., Venter, J.C., Dougherty, B.A., Morrison, D.A., Hollingshead, S.K., and Fraser, C.M. (2001) Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293, 498-506.
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
DeBoy, R.T.8
Haft, D.H.9
Dodson, R.J.10
Durkin, A.S.11
Gwinn, M.12
Kolonay, J.F.13
Nelson, W.C.14
Peterson, J.D.15
Umayam, L.A.16
White, O.17
Salzberg, S.L.18
Lewis, M.R.19
Radune, D.20
Holtzapple, E.21
Khouri, H.22
Wolf, A.M.23
Utterback, T.R.24
Hansen, C.L.25
McDonald, L.A.26
Feldblyum, T.V.27
Angiuoli, S.28
Dickinson, T.29
Hickey, E.K.30
Holt, I.E.31
Loftus, B.J.32
Yang, F.33
Smith, H.O.34
Venter, J.C.35
Dougherty, B.A.36
Morrison, D.A.37
Hollingshead, S.K.38
Fraser, C.M.39
more..
-
135
-
-
29244461323
-
In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: Comparing predictions of nutrient requirements with those from growth experiments
-
Teusink, B., van Enckevort, F.H., Francke, C., Wiersma, A., Wegkamp, A., Smid, E.J., and Siezen, R.J. (2005) In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: Comparing predictions of nutrient requirements with those from growth experiments. Appl Environ Microbiol 71, 7253-7262.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7253-7262
-
-
Teusink, B.1
van Enckevort, F.H.2
Francke, C.3
Wiersma, A.4
Wegkamp, A.5
Smid, E.J.6
Siezen, R.J.7
-
136
-
-
33751555223
-
Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli
-
Tramonti, A., De Canio, M., Delany, I., Scarlato, V., and De Biase, D. (2006) Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli. J Bacteriol 188, 8118-8127.
-
(2006)
J Bacteriol
, vol.188
, pp. 8118-8127
-
-
Tramonti, A.1
De Canio, M.2
Delany, I.3
Scarlato, V.4
De Biase, D.5
-
137
-
-
20444454268
-
Regulation of bacteriocin production in Streptococcus mutans by the quorum-sensing system required for development of genetic competence
-
van der Ploeg, J.R. (2005) Regulation of bacteriocin production in Streptococcus mutans by the quorum-sensing system required for development of genetic competence. J Bacteriol 187, 3980-3989.
-
(2005)
J Bacteriol
, vol.187
, pp. 3980-3989
-
-
van der Ploeg, J.R.1
-
138
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K., and Swings, J. (1996) Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 60, 407-438.
-
(1996)
Microbiol Rev
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
de Vos, P.4
Kersters, K.5
Swings, J.6
-
139
-
-
55849149011
-
Type IV pili and the CcpA protein are needed for maximal biofilm formation by the Gram-positive anaerobic pathogen Clostridium perfringens
-
Varga, J.J., Therit, B., and Melville, S.B. (2008) Type IV pili and the CcpA protein are needed for maximal biofilm formation by the Gram-positive anaerobic pathogen Clostridium perfringens. Infect Immun 76, 4944-4951.
-
(2008)
Infect Immun
, vol.76
, pp. 4944-4951
-
-
Varga, J.J.1
Therit, B.2
Melville, S.B.3
-
140
-
-
17844389564
-
Making 'sense' of metabolism: Autoinducer-2, LuxS and pathogenic bacteria
-
Vendeville, A., Winzer, K., Heurlier, K., Tang, C.M., and Hardie, K.R. (2005) Making 'sense' of metabolism: Autoinducer-2, LuxS and pathogenic bacteria. Nat Rev Microbiol 3, 383-396.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 383-396
-
-
Vendeville, A.1
Winzer, K.2
Heurlier, K.3
Tang, C.M.4
Hardie, K.R.5
-
141
-
-
70349819484
-
The role of bioinformatics in pathway curation
-
Waagmeester, A.S., Kelder, T., and Evelo, C.T. (2008) The role of bioinformatics in pathway curation. Genes Nutr 3, 139-142.
-
(2008)
Genes Nutr
, vol.3
, pp. 139-142
-
-
Waagmeester, A.S.1
Kelder, T.2
Evelo, C.T.3
-
142
-
-
50049098340
-
Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research
-
Walter, J. (2008) Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research. Appl Environ Microbiol 74, 4985-4996.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4985-4996
-
-
Walter, J.1
-
143
-
-
24944540682
-
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
-
Wang, M., Ahrne, S., Jeppsson, B., and Molin, G. (2005) Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol Ecol 54, 219-231.
-
(2005)
FEMS Microbiol Ecol
, vol.54
, pp. 219-231
-
-
Wang, M.1
Ahrne, S.2
Jeppsson, B.3
Molin, G.4
-
144
-
-
0042882421
-
Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis
-
Wang, X., Heazlewood, S.P., Krause, D.O., and Florin, T.H. (2003) Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis. J Appl Microbiol 95, 508-520.
-
(2003)
J Appl Microbiol
, vol.95
, pp. 508-520
-
-
Wang, X.1
Heazlewood, S.P.2
Krause, D.O.3
Florin, T.H.4
-
145
-
-
0142075183
-
Identification of the promoter regions and sigma(s)-dependent regulation of the gadA and gadBC genes associated with glutamate-dependent acid resistance in Shigella flexneri
-
Waterman, S.R., and Small, P.L. (2003) Identification of the promoter regions and sigma(s)-dependent regulation of the gadA and gadBC genes associated with glutamate-dependent acid resistance in Shigella flexneri. FEMS Microbiol Lett 225, 155-160.
-
(2003)
FEMS Microbiol Lett
, vol.225
, pp. 155-160
-
-
Waterman, S.R.1
Small, P.L.2
-
146
-
-
34247854960
-
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363
-
Wegmann, U., O'Connell-Motherway, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., Goesmann, A., Gasson, M.J., Kuipers, O.P., van Sinderen, D., and Kok, J. (2007) Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 189, 3256-3270.
-
(2007)
J Bacteriol
, vol.189
, pp. 3256-3270
-
-
Wegmann, U.1
O'Connell-Motherway, M.2
Zomer, A.3
Buist, G.4
Shearman, C.5
Canchaya, C.6
Ventura, M.7
Goesmann, A.8
Gasson, M.J.9
Kuipers, O.P.10
van Sinderen, D.11
Kok, J.12
-
147
-
-
42349105761
-
Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria
-
Wells, J.M., and Mercenier, A. (2008) Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria. Nat Rev Microbiol 6, 349-362.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 349-362
-
-
Wells, J.M.1
Mercenier, A.2
-
148
-
-
51149109323
-
Role of quorum sensing by Pseudomonas aeruginosa in microbial keratitis and cystic fibrosis
-
Willcox, M.D., Zhu, H., Conibear, T.C., Hume, E.B., Givskov, M., Kjelleberg, S., and Rice, S.A. (2008) Role of quorum sensing by Pseudomonas aeruginosa in microbial keratitis and cystic fibrosis. Microbiology 154, 2184-2194.
-
(2008)
Microbiology
, vol.154
, pp. 2184-2194
-
-
Willcox, M.D.1
Zhu, H.2
Conibear, T.C.3
Hume, E.B.4
Givskov, M.5
Kjelleberg, S.6
Rice, S.A.7
-
149
-
-
0037676088
-
LuxS quorum sensing: More than just a numbers game
-
Xavier, K.B., and Bassler, B.L. (2003) LuxS quorum sensing: More than just a numbers game. Curr Opin Microbiol 6, 191-197.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 191-197
-
-
Xavier, K.B.1
Bassler, B.L.2
|