MutS as a tool for mutation detection

Acta Biochimica Polonica

Volumn 52, Issue 3, 2005, Pages 575-583

  Stanisławska Sachadyn, Anna ^a   Sachadyn, Paweł ^a  

^a GDANSK UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

Chimeric protein; Fusion; Mutation detection; MutS; SNP

Indexed keywords

THERMUS THERMOPHILUS;

EID: 27644484910     PISSN: 0001527X     EISSN: None     Source Type: Journal    
DOI: 10.18388/abp.2005_3417     Document Type: Conference Paper

References (52)

1. Allen DJ, Makhov A, Grilley M, Taylor J, Thresher R, Modrich P, Griffith JD (1997) MutS mediates heteroduplex loop formation by a translocation mechanism. EMBO J 16: 4467-4476.
2. Au KG, Welsh K, Modrich P (1992) Initiation of methyl-directed mismatch repair. J Biol Chem 267: 12142-12148.
3. Behrensdorf HA, Pignot M, Windhab N, Kappel A (2000) Rapid parallel mutation scanning of gene fragments using a microelectronic protein-DNA chip format. Nucleic Acids Res 30: E64.
4. Bi LJ, Zhou YF, Zhang XE, Deng JY, Zhang ZP, Xie B, Zhang CG (2003) A MutS-based protein chip for detection of DNA mutations. Anal Chem 75: 4113-4119.
5. Biswas I, Hsieh P (1997) Interaction of MutS protein with the major and minor grooves of a heteroduplex DNA. J Biol Chem 272: 13355-13364.
6. Biswas I, Fleming KG, Qin J, Lary JW, Yphantis DA, Yang W, Hsieh P (1999) Oligomerization of a MutS mismatch repair protein from Thermus aquaticus. J Biol Chem 274: 23673-23678.
7. Biswas I, Obmolova G, Takahashi M, Herr A, Newman MA, Yang W, Hsieh P (2001) Disruption of helix-u-turn-helix motif of MutS protein: loss of subunit dimerization, mismatch binding and ATP hydrolysis. J Mol Biol 305: 805-816.
8. Bjornson KP, Blackwell LJ, Sage H, Baitinger C, Allen D, Modrich P (2003) Assembly and molecular activities of the MutS tetramer. J Biol Chem 278: 34667-34673.
9. Blackwell LJ, Bjornson KP, Allen DJ, Modrich P (2001) Distinct MutS DNA-binding modes that are differentially modulated by binding and hydrolysis. J Biol Chem 276: 34339-34347.
10. Bronstein I, Martin CS, Fortin JJ, Olesen CE, Voyta JC (1996) Chemiluminescence: sensitive detection technology for reporter gene assays. Clin Chem 42: 1542-1546.
11. Brown J, Brown T, Fox KR (2001) Affinity of mismatch-binding protein MutS for heteroduplexes containing different mismatches. Biochem J 354: 627-633.
12. Buermeyer AB, Dêschenes SM, Baker SM, Liskay RM (1999) Mammalian DNA mismatch repair. Annu Rev Genet 33: 533-564.
13. Connor M, Ferguson-Smith M (1997) Essential Medical Genetics, 5th edn, Table 21.1, Blackwell Science, Oxford.
14. Corchero JL, Villaverde A (1999) Tolerance of Escherichia coli β-galactosidase C-terminus to different-sized fusions. Biotechnol Bioeng 64: 644-649.
15. 4-methylthymine, or the cisplatin-d (GpG) adduct. Proc Natl Acad Sci USA 93: 6443-6447.
16. Ellis LA, Taylor GR, Banks R, Baumberg S (1994) MutS binding protects heteroduplex DNA from exonuclease digestion in vitro: a simple method for detecting mutations. Nucleic Acids Res 22: 2710-2711.
17. 6-MutS repair proteins of Escherichia coli K12. Biotechniques 19: 956-965.
18. Fries JR, Brand L, Eggeling C, Köllner M, Seidel CAM (1998) Quantitative identification of different single molecules by selective time-resolved confocal fluorescence spectroscopy. J Phys Chem A 102: 6601-6613.
19. Geschwind DH, Rhee R, Nelson SF (1996) A biotinylated MutS fusion protein and its use in a rapid mutation screening technique. Genet Anal 13: 105-111.
20. Gotoh M, Hasebe M, Ohira T, Hasegawa Y, Shinohara Y, Sota H, Nakao J, Tosu M (1997) Rapid method for detection of point mutation using mismatch binding protein (MutS) and an optical biosensor. Genet Anal 14: 47-50.
21. Gotoh K, Hata M, Miyajima M, Yokota H (2000) Genome wide detection of unknown subtle mutations in bacteria by combination of MutS and RDA. Biochem Biophys Res Commun 268: 535-540.
22. Iwane AH, Funatsu T, Harada Y, Tokunaga M, Ohara O, Morimoto S, Yanagida T (1997) Single molecular assay of individual ATP turnover by a myosin-GFP fusion protein expressed in vitro. FEBS Lett 407: 235-238.
23. Jain VK, Magrath, IT (1991) A chemiluminescent assay for quantitation of β-galactosidase in the femtogram range: application to quantitation of β-galactosidase in lacZ-transfected cells. Anal Biochem 199: 119-124.
24. Johnson KA, Mierzwa ML, Fink SP, Marnett LJ, Hancock AB Jr (1999) MutS recognition of exocyclic DNA adducts that are endogenous products of lipid oxidation. J Biol Chem 274: 27112-27118.
25. Joshi A, Rao BJ (2001) MutS recognition: multiple mismatches and sequence context effects. J Biosci 26: 595-606.
26. Kemper B (1997) In DNA Damage and Repair. Biochemistry, Genetics and Cell Biology. Nickoloff JA, Hoekstra M, eds, pp 179-204. Humana Press, Totowa, NJ.
27. Kubitscheck U, Kückmann O, Kues T, Peters R (2000) Imaging and Tracking of Single GFP Molecules in Solution. Biophys J 78: 2170-2179.
28. Lamers MH, Perrakis A, Enzlin JH, Winterwerp HH, de Wind N, Sixma TK (2000) The crystal structure of mismatch repair protein MutS binding to a GxT mismatch. Nature 407: 711-717.
29. Lishanski A, Ostrander EA, Rine J (1994) Mutation detection by mismatch binding protein, MutS, in amplified DNA: application to the cystic fibrosis gene. Proc Natl Acad Sci USA 91: 2674-2678.
30. McKusick VA (1994). Mendelian Inheritance in Man: A Catalog of Human Genetics and Genetic Disorders, 11th edn. The Johns Hopkins University Press, Baltimore.
31. Modrich, P (1991) Mechanisms and biological effects of mismatch repair. Annu Rev Genet 25: 229-253.
32. Nakahara T, Zhang, QM, Hashiguchi K, Yonei S (2000) Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. Nucleic Acids Res 28: 2551-2556.
33. Obmolova G, Ban C, Hsieh P, Yang W (2000) Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 407: 703-710.
34. Parker BO, Marinus MG (1992) Repair of DNA heteroduplexes containing small heterologous sequences in Escherichia coli. Proc Natl Acad Sci USA 89: 1730-1734.
35. Parsons BL, Heflich RH (1997) Evaluation of MutS as a tool for direct measurement of point mutations in genomic DNA. Mutat Res 374: 277-285.
36. -7 by combining two genotypic selection methods, MutEx enrichment and allele-specific competitive blocker PCR. Environ Mol Mutagen 32: 200-211.
37. Roses AD (2001) Pharmacogenetics. Hum Mol Genet 10: 2261-2267.
38. Sachadyn P, Stanisławska A, Kur J (2000) One tube mutation detection using sensitive fluorescent dyeing of MutS protected DNA. Nucleic Acids Res 28: E36.
39. Smith J, Modrich P (1997) Removal of polymerase-produced mutant sequences from PCR products. Proc Natl Acad Sci USA 94: 6847-6850.
40. 6-Thermus thermophilus MutS protein. Protein Expr Purif 28: 69-77.
41. Stanisławska-Sachadyn A, Paszko Z, Kluska A, Skasko E, Sromek M, Balabas A, Janiec-Jankowska A, Wiśniewska A, Kur J, Sachadyn P (2005) Preliminary studies on DNA retardation by MutS applied to the detection of point mutations in clinical samples. Mutat Res 570: 97-103.
42. Su S, Lahue RS, Au KG, Modrich P (1988) Mispair specificity of methyl-directed DNA mismatch correction in vitro. J Biol Chem 263: 6829-6835.
43. Sun HB, Yokota H (2000) MutS-mediated detection of DNA mismatches using atomic force microscopy. Anal Chem 72: 3138-3141.
44. Takamatsu S, Kato R, Kuramitsu S (1996) Mismatch DNA recognition protein from an extremely thermophilic bacterium, Thermus thermophilus HB8. Nucleic Acids Res 4: 640-647.
45. Viaplana E, Feliu JX, Corchero JL, Villaverde, A (1997) Reversible activation of a cryptic cleavage site within E. coli β-galactosidase in β-galactosidase fusion proteins. Biochim Biophys Acta 1343: 221-226.
46. Vijayvargia R, Biswas I (2002) MutS2 family protein from Pyrococcus furiosus. Curr Microbiol 44: 224-228.
47. Wagner R, Debbie P, Radman M (1995) Mutation detection using immobilized mismatch binding protein (MutS). Nucleic Acids Res 23: 3944-3948.
48. Wang J, Liu J (2004) Directly fishing out subtle mutations in genomic DNA with histidine-tagged Thermus thermophilus MutS. Mutat Res 547: 41-47.
49. Wabuyele MB, Ford SM, Stryjewski W, Barrow J, Soper SA (2001) Single molecule detection of double-stranded DNA in poly (methylmethacrylate) and polycarbonate microfluidic devices. Electrophoresis 22: 3939-3948.
50. Whitehouse A, Deeble J, Parmar R, Taylor GR, Markham AF, Meredith DM (1997) Analysis of the mismatch and insertion/deletion binding properties of Thermus thermophilus, HB8, MutS. Biochem Biophys Res Commun 233: 834-837.
51. Worth L Jr, Bader T, Yang J, Clark S (1998) Role of MutS ATPase activity in MutS,L-dependent block of in vitro strand transfer. J Biol Chem 273: 23176-23182.
52. Wu TH, Marinus MG (1999) Deletion mutation analysis of the mutS Gene in Escherichia coli. J Biol Chem 274: 5948-5952.